Citrus Sinensis ID: 008939
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | 2.2.26 [Sep-21-2011] | |||||||
| A1DMI8 | 603 | Probable catabolite repre | N/A | no | 0.644 | 0.585 | 0.334 | 3e-59 | |
| A2QVV2 | 591 | Probable catabolite repre | yes | no | 0.740 | 0.686 | 0.319 | 2e-58 | |
| A1CTE6 | 573 | Probable catabolite repre | N/A | no | 0.642 | 0.614 | 0.326 | 1e-57 | |
| Q2UM42 | 572 | Probable catabolite repre | yes | no | 0.702 | 0.673 | 0.325 | 2e-57 | |
| B8N4F5 | 572 | Probable catabolite repre | N/A | no | 0.702 | 0.673 | 0.325 | 2e-57 | |
| Q4WN25 | 566 | Probable catabolite repre | yes | no | 0.631 | 0.611 | 0.342 | 3e-57 | |
| B0Y7H6 | 566 | Probable catabolite repre | N/A | no | 0.631 | 0.611 | 0.342 | 3e-57 | |
| Q0CKB1 | 588 | Probable catabolite repre | N/A | no | 0.693 | 0.646 | 0.324 | 2e-56 | |
| Q9P4R5 | 592 | Catabolite repression pro | yes | no | 0.689 | 0.638 | 0.313 | 2e-55 | |
| Q8TBZ3 | 569 | WD repeat-containing prot | yes | no | 0.552 | 0.532 | 0.373 | 6e-53 |
| >sp|A1DMI8|CREC_NEOFI Probable catabolite repression protein creC OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=creC PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 210/412 (50%), Gaps = 59/412 (14%)
Query: 141 KGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGH--DLLIGLNS 197
+G + N+ A DL+S Q ++P+ I F+ ++ +CH ++ K D+++G ++
Sbjct: 174 EGLFAFANINRAFQWLDLSSKQKEEPLAKILFTKAHMLCHDINEVTKSPSHIDMVMGSSA 233
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V+NS T + W+PG + F+ HA+G L V
Sbjct: 234 GDII------WYEPISQKYA---RINKNGVVSNSPVTHIKWIPGSENLFMASHANGQLVV 284
Query: 258 YEKSKDGAGDSSF-PVIKDQTQFSV-------------AHPRYSKSNPIARWHICQGSIN 303
Y+K K+ D+ F P I+DQ+ ++ + R K+NP+A W + I+
Sbjct: 285 YDKEKE---DALFTPEIQDQSAEALKASSRQPLQVLKSVNSRNQKTNPVALWKLANQRIS 341
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363
AFS D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+DD
Sbjct: 342 HFAFSPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDD 401
Query: 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423
L+ +WS +RK+VA +GHNSWVS VAFD + + YRFGSVG D RLLLW
Sbjct: 402 LLTIWSFPERKIVARCQGHNSWVSAVAFDPW--------QCDERTYRFGSVGDDCRLLLW 453
Query: 424 DLEMDEIVVP----------------------LRRGPLGGSPTFSTGSQSAHWDNVCPVG 461
D + + P R G+ S ++A+ C
Sbjct: 454 DFSVGMLHRPKVHQASARQRTSMVAGSSQYGNRHRADSAGNRMRSDSQRTANTYESCDQA 513
Query: 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V T+P+ L F ++ ++T EGHI+ W RP
Sbjct: 514 VRHPVEPRARTALLPPIMSKVVGTDPICWLGFQEDCIMTSSLEGHIRTWDRP 565
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Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) |
| >sp|A2QVV2|CREC_ASPNC Probable catabolite repression protein creC OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=creC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/467 (31%), Positives = 223/467 (47%), Gaps = 61/467 (13%)
Query: 90 AAKLLGTGNGSRTL-----GFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTY 144
AA L G GN + G + I SS S + + + + + G +
Sbjct: 112 AASLFGDGNPALAAPPVKEGLKRRKPKNNIIKSSSSFVSRVITHETATKRLNDRNPDGLF 171
Query: 145 IIFNVGDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGH--DLLIGLNSGDV- 200
N+ A DL++ Q ++P+ I F+ ++ + H ++ K D+++G ++GD+
Sbjct: 172 AFANINRAFQWLDLSAKQKEEPVTKILFTKAHMISHDINELTKSTSHIDVVMGSSAGDII 231
Query: 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEK 260
+ + Q+ + NK+G VNNS T + W+PG + F+ HA+G L VY+K
Sbjct: 232 WYEPMSQKYARI----------NKNGVVNNSPVTHIKWIPGSENLFMAAHANGQLVVYDK 281
Query: 261 SKDGA------GDSSFPVIKDQT------QFSVAHPRYSKSNPIARWHICQGSINSIAFS 308
K+ A G S +K + + R K+NP+A W + I AFS
Sbjct: 282 EKEDALFAPELGSPSAETMKSSSGRSPLQILKSVNSRNQKTNPVALWKLANQKITQFAFS 341
Query: 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368
D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+DDLV +W
Sbjct: 342 PDRRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDDLVTIW 401
Query: 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428
S+ +RK+VA +GHNSWVS VAFD + + YRFGSVG D RLLLWD +
Sbjct: 402 SLPERKIVARCQGHNSWVSAVAFDPW--------RCDDRTYRFGSVGDDCRLLLWDFSVG 453
Query: 429 EIVVP----------------------LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466
+ P R GG+ T S ++A N P
Sbjct: 454 MLHRPRVHQANARQRTSMIVSNTQHLNRHRADSGGNRTRSDSQETADTYNSYDPTVRHPV 513
Query: 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
L P+++ V +P+ L F ++S++T EGHI+ W RP
Sbjct: 514 EPRARTALLPPIMSKIVGEDPICWLGFQEDSIMTSSLEGHIRTWDRP 560
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Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|A1CTE6|CREC_ASPCL Probable catabolite repression protein creC OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=creC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 211/413 (51%), Gaps = 61/413 (14%)
Query: 141 KGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGH--DLLIGLNS 197
+G + N+ A DL+S Q ++P+ I F+ ++ +CH ++ K D+++G ++
Sbjct: 144 EGLFAFANINRAFQWLDLSSKQKEEPLTKILFTKAHMLCHDTNELTKSSSHIDIVMGSSA 203
Query: 198 GDV-YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 256
GD+ + + Q+ + NK+G V+NS T + W+PG + F+ HA+G L
Sbjct: 204 GDIIWYEPMSQKYARI----------NKNGVVSNSPVTHIKWIPGSENLFMAAHANGQLA 253
Query: 257 VYEKSKDGAGDSSF-PVIKDQTQFSV-------------AHPRYSKSNPIARWHICQGSI 302
VY+K K+ D+ F P I++Q+ ++ + R K+NP+A W + I
Sbjct: 254 VYDKEKE---DALFTPEIQNQSAEALKASGRQPLQVLKSVNSRNQKTNPVALWKLANQRI 310
Query: 303 NSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362
+ AFS D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+D
Sbjct: 311 SHFAFSPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQD 370
Query: 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422
DL+ +WS+ +RK+VA +GHNSWVS VAFD + + YRFGSVG D RLLL
Sbjct: 371 DLLTIWSLPERKIVARCQGHNSWVSAVAFDPW--------RCDERTYRFGSVGDDCRLLL 422
Query: 423 WDLEMDEIVVP----------------------LRRGPLGGSPTFSTGSQSAHWDNVCPV 460
WD + + P R + S ++A+ C
Sbjct: 423 WDFSVGMLHRPKVYQASARQRTSMITSNTQYGNRHRADSASNRMRSDSQKTANTYESCDQ 482
Query: 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V ++P+ L F ++ ++T EGHI+ W RP
Sbjct: 483 AVRHPVEPRARTALLPPIMSKVVGSDPICWLGFQEDCIMTSSLEGHIRTWDRP 535
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Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) |
| >sp|Q2UM42|CREC_ASPOR Probable catabolite repression protein creC OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=creC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 223/443 (50%), Gaps = 58/443 (13%)
Query: 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAK 186
+SS + + N DG + N+ A DL+S++K+ P+ I F+ ++ + H ++ K
Sbjct: 134 ASSKRLNDRNPDG--LFAFANINRAFQWLDLSSKNKEEPLAKILFTKAHMLTHDINELTK 191
Query: 187 DGH--DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244
D+ +G ++GD+ + + +K NK+G V+NS T + W+PG +
Sbjct: 192 SSSHIDIAMGSSAGDII------WYEPISQKYA---RINKNGVVSNSPVTHIKWIPGSEN 242
Query: 245 AFVVGHADGNLYVYEKSKDGA------GDSSFPVIKDQTQFSV-----AHPRYSKSNPIA 293
F+ HA+G L VY+K K+ A + S +K ++ + + R K+NP+A
Sbjct: 243 MFMAAHANGQLVVYDKEKEDALFTPEISNHSAEAMKASSRLPLQVLKSVNSRNQKTNPVA 302
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
W + I+ AFS D +LA V DG LRV DY KE+++ +SYYG L+C WS DG
Sbjct: 303 LWKLANQKISQFAFSPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDG 362
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
KYI+TGG+DDLV +WS +RK+VA +GHNSWVS VAFD + + YRFGS
Sbjct: 363 KYIVTGGQDDLVTIWSFPERKIVARCQGHNSWVSTVAFDPW--------RCDERTYRFGS 414
Query: 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD------------------ 455
VG D RLLLWD + + P T S + H++
Sbjct: 415 VGDDCRLLLWDFSVGMLHRPRAHQASARQRTSMIASNTQHFNRHRADSASNRMRSDSQRT 474
Query: 456 ----NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 511
N P L P+++ V +P+ L F ++S++T EGHI+ W
Sbjct: 475 ADTYNDYDSAVRHPVEPRARTALLPPIMSKIVGDDPICWLGFQEDSIMTSSLEGHIRTWD 534
Query: 512 RP--GVAESQS-SSSETVLSTSS 531
RP G+ +S + ++S +STS+
Sbjct: 535 RPREGINDSYNGNTSSPAISTSA 557
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Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
| >sp|B8N4F5|CREC_ASPFN Probable catabolite repression protein creC OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=creC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 223/443 (50%), Gaps = 58/443 (13%)
Query: 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAK 186
+SS + + N DG + N+ A DL+S++K+ P+ I F+ ++ + H ++ K
Sbjct: 134 ASSKRLNDRNPDG--LFAFANINRAFQWLDLSSKNKEEPLAKILFTKAHMLTHDINELTK 191
Query: 187 DGH--DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244
D+ +G ++GD+ + + +K NK+G V+NS T + W+PG +
Sbjct: 192 SSSHIDIAMGSSAGDII------WYEPISQKYA---RINKNGVVSNSPVTHIKWIPGSEN 242
Query: 245 AFVVGHADGNLYVYEKSKDGA------GDSSFPVIKDQTQFSV-----AHPRYSKSNPIA 293
F+ HA+G L VY+K K+ A + S +K ++ + + R K+NP+A
Sbjct: 243 MFMAAHANGQLVVYDKEKEDALFTPEISNHSAEAMKASSRLPLQVLKSVNSRNQKTNPVA 302
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
W + I+ AFS D +LA V DG LRV DY KE+++ +SYYG L+C WS DG
Sbjct: 303 LWKLANQKISQFAFSPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDG 362
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
KYI+TGG+DDLV +WS +RK+VA +GHNSWVS VAFD + + YRFGS
Sbjct: 363 KYIVTGGQDDLVTIWSFPERKIVARCQGHNSWVSTVAFDPW--------RCDERTYRFGS 414
Query: 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD------------------ 455
VG D RLLLWD + + P T S + H++
Sbjct: 415 VGDDCRLLLWDFSVGMLHRPRAHQASARQRTSMIASNTQHFNRHRADSASNRMRSDSQRT 474
Query: 456 ----NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 511
N P L P+++ V +P+ L F ++S++T EGHI+ W
Sbjct: 475 ADTYNDYDSAVRHPVEPRARTALLPPIMSKIVGDDPICWLGFQEDSIMTSSLEGHIRTWD 534
Query: 512 RP--GVAESQS-SSSETVLSTSS 531
RP G+ +S + ++S +STS+
Sbjct: 535 RPREGINDSYNGNTSSPAISTSA 557
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Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952) |
| >sp|Q4WN25|CREC_ASPFU Probable catabolite repression protein creC OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=creC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 206/412 (50%), Gaps = 66/412 (16%)
Query: 141 KGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGH--DLLIGLNS 197
+G + N+ A DL+S Q +DP+ I F+ ++ +CH ++ K D+++G ++
Sbjct: 144 EGLFAFANINRAFQWLDLSSKQKEDPLAKILFTKAHMLCHDINEVTKSPSHIDVVMGSSA 203
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V NS T + W+PG + F+ HA+G L V
Sbjct: 204 GDII------WYEPISQKYA---RINKNGVVCNSPVTHIKWIPGSENLFMASHANGQLVV 254
Query: 258 YEKSKDGAGDSSF-PVIKDQTQFSV-------------AHPRYSKSNPIARWHICQGSIN 303
Y+K K+ D+ F P I+DQ+ +V + R K+NP+A W + I+
Sbjct: 255 YDKEKE---DALFTPEIQDQSAEAVKASSTQPLQVLKSVNSRNQKTNPVALWKLANQRIS 311
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363
AFS D +LA V DG LRV DY KE YYG L+C WS DGKYI+TGG+DD
Sbjct: 312 HFAFSPDQRHLAVVLEDGSLRVMDYLKE-------DYYGGLICVCWSPDGKYIVTGGQDD 364
Query: 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423
LV +WS +RK+VA +GHNSWVS VAFD + + YRFGSVG D RLLLW
Sbjct: 365 LVTIWSFPERKIVARCQGHNSWVSAVAFDPW--------QCDERTYRFGSVGDDCRLLLW 416
Query: 424 DLEMDEIVVP--------LRRGPLGGSPTF--------------STGSQSAHWDNVCPVG 461
D + + P R + GS + S ++A+ C
Sbjct: 417 DFSVGMLHRPKVHQTSARQRTSMVAGSSQYGNRHRADSVGNRMRSDSQRTANTYESCDQA 476
Query: 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V T+P+ L F ++ ++T EGHI+ W RP
Sbjct: 477 VRHPVEPRARTALLPPIMSKVVGTDPICWLGFQEDCIMTSSLEGHIRTWDRP 528
|
Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|B0Y7H6|CREC_ASPFC Probable catabolite repression protein creC OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=creC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 206/412 (50%), Gaps = 66/412 (16%)
Query: 141 KGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGH--DLLIGLNS 197
+G + N+ A DL+S Q +DP+ I F+ ++ +CH ++ K D+++G ++
Sbjct: 144 EGLFAFANINRAFQWLDLSSKQKEDPLAKILFTKAHMLCHDINEVTKSPSHIDVVMGSSA 203
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V NS T + W+PG + F+ HA+G L V
Sbjct: 204 GDII------WYEPISQKYA---RINKNGVVCNSPVTHIKWIPGSENLFMASHANGQLVV 254
Query: 258 YEKSKDGAGDSSF-PVIKDQTQFSV-------------AHPRYSKSNPIARWHICQGSIN 303
Y+K K+ D+ F P I+DQ+ +V + R K+NP+A W + I+
Sbjct: 255 YDKEKE---DALFTPEIQDQSAEAVKASSTQPLQVLKSVNSRNQKTNPVALWKLANQRIS 311
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363
AFS D +LA V DG LRV DY KE YYG L+C WS DGKYI+TGG+DD
Sbjct: 312 HFAFSPDQRHLAVVLEDGSLRVMDYLKE-------DYYGGLICVCWSPDGKYIVTGGQDD 364
Query: 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423
LV +WS +RK+VA +GHNSWVS VAFD + + YRFGSVG D RLLLW
Sbjct: 365 LVTIWSFPERKIVARCQGHNSWVSAVAFDPW--------QCDERTYRFGSVGDDCRLLLW 416
Query: 424 DLEMDEIVVP--------LRRGPLGGSPTF--------------STGSQSAHWDNVCPVG 461
D + + P R + GS + S ++A+ C
Sbjct: 417 DFSVGMLHRPKVHQTSARQRTSMVAGSSQYGNRHRADSVGNRMRSDSQRTANTYESCDQA 476
Query: 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V T+P+ L F ++ ++T EGHI+ W RP
Sbjct: 477 VRHPVEPRARTALLPPIMSKVVGTDPICWLGFQEDCIMTSSLEGHIRTWDRP 528
|
Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804) |
| >sp|Q0CKB1|CREC_ASPTN Probable catabolite repression protein creC OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=creC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 211/428 (49%), Gaps = 48/428 (11%)
Query: 116 SGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFSNS 174
S SS + + +ST N + + +G + N+ A DL S Q ++P+ I F+ +
Sbjct: 144 SSSSFVSRVITHEASTKRLN-DRNPEGLFAFANINRAFQWLDLGSKQKEEPLAKILFTKA 202
Query: 175 NPVCHAFDQDAKDGH--DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 232
+ + H ++ K D+++G ++GD+ + + +K NK+G V NS
Sbjct: 203 HMLSHDINELTKSASHIDVVMGSSAGDII------WYEPISQKYA---RINKNGVVCNSP 253
Query: 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ-----FSVAHPRYS 287
T + WVPG + F+ HA+G L VY+K K+ A + +K Q + R
Sbjct: 254 VTHIKWVPGSENLFMAAHANGQLVVYDKEKEDALFTPEEPVKSSGQQPLQVLKSVNSRNQ 313
Query: 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347
K+NP+A W + I AFS D +LA V DG LRV DY +E+++ +SYYG L+C
Sbjct: 314 KTNPVALWKLANQKITQFAFSPDQRHLAVVLEDGSLRVMDYLEEEVLDIFRSYYGGLICV 373
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407
WS DGKYI+TGG+DDLV +WS +RK+VA +GHNSWVS VAFD + +
Sbjct: 374 CWSPDGKYIVTGGQDDLVTIWSFPERKIVARCQGHNSWVSTVAFDPW--------RCDER 425
Query: 408 MYRFGSVGQDTRLLLWDLEMDEIVVP----------------------LRRGPLGGSPTF 445
YRFGSVG D RLLLWD + + P R G+
Sbjct: 426 TYRFGSVGDDCRLLLWDFSVGMLHRPRAHQASTRQRTSMITSNSQHASRHRADSAGNRAR 485
Query: 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREG 505
S ++A + P L P+++ + ++P+ L F ++S++T EG
Sbjct: 486 SDSQRTADGYDEYDQAVRHPVEPRARTALLPPIMSKEIGSDPICWLGFQEDSIMTSSLEG 545
Query: 506 HIKIWMRP 513
HI+ W RP
Sbjct: 546 HIRTWDRP 553
|
Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) |
| >sp|Q9P4R5|CREC_EMENI Catabolite repression protein creC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=creC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 216/437 (49%), Gaps = 59/437 (13%)
Query: 116 SGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNS 174
S SS + + ++T N + D +G + N+ A DL+S+ KD P+ I F+ +
Sbjct: 143 SSSSFVSRVIIHEATTKRLN-DRDPEGLFAFANINRAFQWLDLSSKHKDEPLSKILFTKA 201
Query: 175 NPVCHAFDQDAKDGH--DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 232
+ + H ++ K D+++G ++GD++ + + +K NK+G +N+S
Sbjct: 202 HMISHDVNEITKSSAHIDVIMGSSAGDIF------WYEPISQKYA---RINKNGIINSSP 252
Query: 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS----- 287
T + W+PG + F+ H +G L VY+K K+ A P + +Q+ SV R+S
Sbjct: 253 VTHIKWIPGSENFFIAAHENGQLVVYDKEKEDA--LFIPELPEQSAESVKPSRWSLQVLK 310
Query: 288 -------KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY 340
K+NP+A W + I AFS D +LA V DG LR+ DY +E+++ +SY
Sbjct: 311 SVNSKNQKANPVAVWRLANQKITQFAFSPDHRHLAVVLEDGTLRLMDYLQEEVLDVFRSY 370
Query: 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNS 400
YG C WS DGKYI+TGG+DDLV +WS+ +RK++A +GH+SWVS VAFD +
Sbjct: 371 YGGFTCVCWSPDGKYIVTGGQDDLVTIWSLPERKIIARCQGHDSWVSAVAFDPW------ 424
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP-----------------------LRRG 437
+ YR GSVG D LLLWD + + P R
Sbjct: 425 --RCDERTYRIGSVGDDCNLLLWDFSVGMLHRPKVHHQTSARHRTSLIAPSSQQPNRHRA 482
Query: 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQ-PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE 496
G+ S ++A P +Q P S L P+++ V +P+ L F ++
Sbjct: 483 DSSGNRMRSDSQRTAADSESAPDQPVQHPVESRARTALLPPIMSKAVGEDPICWLGFQED 542
Query: 497 SVLTVCREGHIKIWMRP 513
+++T EGHI+ W RP
Sbjct: 543 TIMTSSLEGHIRTWDRP 559
|
Component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Required to prevent the proteolysis of the CreB deubiquitinating enzyme in the absence of carbon catabolite repression. CreB deubiquitinating enzyme stabilized in a complex with the CreC leads to the expression of genes such as those in the proline and quinate pathways. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|Q8TBZ3|WDR20_HUMAN WD repeat-containing protein 20 OS=Homo sapiens GN=WDR20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 183/361 (50%), Gaps = 58/361 (16%)
Query: 121 IGSLGASSSSTSMTNTNFD-GKGTYIIFNVGDAIFISDLNSQDK-----DPIKSIHFSNS 174
S G++ S N N G G + FNVG ++ K PI + +
Sbjct: 40 FNSQGSNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGT 99
Query: 175 NPVCHAFDQ--DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 232
P CH F+ + LL+G ++G V QL D KK + +N++ ++ SR
Sbjct: 100 QPTCHDFNHLTATAESVSLLVGFSAGQV-------QLIDPIKKET-SKLFNEERLIDKSR 151
Query: 233 CTSVTWVPGGDGAFVVGHADGNLYVYE-KSKDGAGDSSFPVIKDQTQFSVAHPRYSKS-- 289
T V WVPG + F+V H+ GN+Y+Y + G + ++K F+V H SKS
Sbjct: 152 VTCVKWVPGSESLFLVAHSSGNMYLYNVEHTCGTTAPHYQLLKQGESFAV-HTCKSKSTR 210
Query: 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 349
NP+ +W + +G++N AFS DG +LA V +DG+LRVF++ +L KSY+G LLC W
Sbjct: 211 NPLLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSVELHGTMKSYFGGLLCVCW 270
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY--------------- 394
S DGKYI+TGGEDDLV VWS D +V+A G GH SWVS VAFD Y
Sbjct: 271 SPDGKYIVTGGEDDLVTVWSFVDCRVIARGHGHKSWVSVVAFDPYTTSVEEGDPMEFSGS 330
Query: 395 ---------------------WSQPNS-DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432
S+ NS D +V YRFGSVGQDT+L LWDL D I+
Sbjct: 331 DEDFQDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLTED-ILF 389
Query: 433 P 433
P
Sbjct: 390 P 390
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| 224138674 | 560 | predicted protein [Populus trichocarpa] | 0.998 | 0.976 | 0.839 | 0.0 | |
| 225439966 | 554 | PREDICTED: WD repeat-containing protein | 0.996 | 0.985 | 0.833 | 0.0 | |
| 356572432 | 550 | PREDICTED: WD repeat-containing protein | 0.974 | 0.970 | 0.865 | 0.0 | |
| 356537537 | 552 | PREDICTED: WD repeat-containing protein | 0.996 | 0.989 | 0.810 | 0.0 | |
| 224068693 | 548 | predicted protein [Populus trichocarpa] | 0.998 | 0.998 | 0.865 | 0.0 | |
| 356548238 | 546 | PREDICTED: probable catabolite repressio | 0.994 | 0.998 | 0.815 | 0.0 | |
| 356505212 | 550 | PREDICTED: WD repeat-containing protein | 0.974 | 0.970 | 0.865 | 0.0 | |
| 255557026 | 539 | nucleotide binding protein, putative [Ri | 0.979 | 0.996 | 0.850 | 0.0 | |
| 42565893 | 558 | transducin/WD40 domain-containing protei | 0.994 | 0.976 | 0.784 | 0.0 | |
| 356548240 | 567 | PREDICTED: probable catabolite repressio | 0.994 | 0.961 | 0.785 | 0.0 |
| >gi|224138674|ref|XP_002322873.1| predicted protein [Populus trichocarpa] gi|222867503|gb|EEF04634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/561 (83%), Positives = 501/561 (89%), Gaps = 14/561 (2%)
Query: 1 MINTANGMISQSSSSANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATL 60
MIN++NGMIS SS+SAN QSPGLKTYFKTPEGRYKLHYEKT+PSGLLHYAHGKTVTQ TL
Sbjct: 1 MINSSNGMISTSSTSANTQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTL 60
Query: 61 AHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGF-------GGGNGGSK 113
A +K+KPAPSTP APPS FS SGV RSAAA+LLG NGSR L F + S
Sbjct: 61 AIIKDKPAPSTPMAPPSGFSTGSGV-RSAAARLLGASNGSRALSFVGGNGGSKSISSSSS 119
Query: 114 SISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN 173
S S SSRIGSLG S SS SM N+NFDGKGTY+IFNVGDAIFI+DLNSQDKDPIKSIHFSN
Sbjct: 120 SSSSSSRIGSLGTSCSSNSMINSNFDGKGTYLIFNVGDAIFITDLNSQDKDPIKSIHFSN 179
Query: 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS-- 231
SNPVCHAFDQDAKDGHDLLIGL+SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN
Sbjct: 180 SNPVCHAFDQDAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNRQE 239
Query: 232 ---RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288
RC S+ WVPGGDGAFVV HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV+H RYSK
Sbjct: 240 YLYRCMSIAWVPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVSHARYSK 299
Query: 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 348
SNPIARWHICQGSIN IAFS +G YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA
Sbjct: 300 SNPIARWHICQGSINGIAFSNEGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 359
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
WSMD KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PNSDGT E V+
Sbjct: 360 WSMDAKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSDGTGENVV 419
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467
YRFGSVGQDT+LLLWDLEMDEIVVPLRR P GGSPTFSTGSQS+HWD+V PVGTLQPAP
Sbjct: 420 YRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPPGGSPTFSTGSQSSHWDSVIPVGTLQPAP 479
Query: 468 SMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVL 527
SMRDVPKLSP+VAHRVHTEPLSGL+FTQE VLTVCREGH+KIWMRPG +SQS +SET+
Sbjct: 480 SMRDVPKLSPVVAHRVHTEPLSGLVFTQECVLTVCREGHVKIWMRPGALDSQSGNSETIP 539
Query: 528 STSSKDKPLLSSKVVTSSYRQ 548
STS K+KPLLSSK+ +S+Y+Q
Sbjct: 540 STSLKEKPLLSSKIGSSTYKQ 560
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439966|ref|XP_002280841.1| PREDICTED: WD repeat-containing protein 20-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/551 (83%), Positives = 494/551 (89%), Gaps = 5/551 (0%)
Query: 1 MINTANGMISQSSSSA--NAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQA 58
MINT NGM+S SSSSA NAQSPGLKTYFKTPEGRYKLHYEKT+P+GLLHY HGKTVTQ
Sbjct: 1 MINTTNGMMSPSSSSATNNAQSPGLKTYFKTPEGRYKLHYEKTHPAGLLHYGHGKTVTQV 60
Query: 59 TLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGS 118
TLAHLK+KP ++P APPSS+S GV RSAAA+ LG NGSR L F GGNGGSKS+SG+
Sbjct: 61 TLAHLKDKPVSASPPAPPSSYSTGGGV-RSAAARFLGGSNGSRALSFVGGNGGSKSVSGN 119
Query: 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC 178
RIGS+G SS S +NFDGKGTY+IFNVGDAIFI DLN+QDKDPIKSIHFSNSNPVC
Sbjct: 120 GRIGSIGVSSLSNPTGTSNFDGKGTYLIFNVGDAIFICDLNTQDKDPIKSIHFSNSNPVC 179
Query: 179 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW 238
HAFD DAKDGHDLLIGLNSGDVYSVSLRQQL D+GKKLVGA HYNKDG VN+SRCTS+ W
Sbjct: 180 HAFDPDAKDGHDLLIGLNSGDVYSVSLRQQLLDLGKKLVGAQHYNKDGCVNSSRCTSIAW 239
Query: 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 298
VP GDGAFVV HADGNLYVYEKSK+GAGDSSFPVIKDQTQFSVAH RYSKSNPIARWHIC
Sbjct: 240 VPDGDGAFVVAHADGNLYVYEKSKEGAGDSSFPVIKDQTQFSVAHARYSKSNPIARWHIC 299
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
GSIN + FSTDG Y+ATVGRDGYLRVFD+S+EQLICGGKSYYGALLCCAWS+DGKYILT
Sbjct: 300 PGSINGVTFSTDGAYIATVGRDGYLRVFDFSREQLICGGKSYYGALLCCAWSVDGKYILT 359
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD +WS PNSDGT E ++YRFGSVGQDT
Sbjct: 360 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDPFWSPPNSDGTGENIVYRFGSVGQDT 419
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478
+LLLWDLEMDEIVVPLRR P GGSPTFSTGSQS+HWDN CPVGTLQPAPS+RDVPKLSPL
Sbjct: 420 QLLLWDLEMDEIVVPLRRCP-GGSPTFSTGSQSSHWDNACPVGTLQPAPSIRDVPKLSPL 478
Query: 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKP-LL 537
VAHRVHT+PLSGL+FTQESVLT CREGHIKIW RPGVAE QSS+SE +LSTSSKDK LL
Sbjct: 479 VAHRVHTDPLSGLMFTQESVLTACREGHIKIWTRPGVAEIQSSNSEALLSTSSKDKQLLL 538
Query: 538 SSKVVTSSYRQ 548
S KV + Y+Q
Sbjct: 539 SGKVGGNGYKQ 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572432|ref|XP_003554372.1| PREDICTED: WD repeat-containing protein 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/537 (86%), Positives = 497/537 (92%), Gaps = 3/537 (0%)
Query: 1 MINTANG-MISQSSSSANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQAT 59
M+NTANG M+S SSSS AQSPGLKTYFKTPEGRYKLHYEKT+PSGLLHYAHGKTVTQ T
Sbjct: 1 MMNTANGTMMSPSSSSVTAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVT 60
Query: 60 LAHLKEKPAPSTPTAPPSSFSASSGV-VRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGS 118
LAHLK+KPAPSTPTA SS S S+ VRSAAA+LLG NGSR L F GGNGGSKS G+
Sbjct: 61 LAHLKDKPAPSTPTASSSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGN 120
Query: 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC 178
+RIGS+GASS+S++M N NFDGKGTY+IFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC
Sbjct: 121 TRIGSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC 180
Query: 179 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW 238
HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK VGA HYN+DGSVNNSRCT + W
Sbjct: 181 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKPVGALHYNRDGSVNNSRCTCIAW 240
Query: 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 298
VPGGDG+FVV HADGNLYVYEK+KDGAGDSSFPV+KDQTQFSVAH RYSKSNPIARWHIC
Sbjct: 241 VPGGDGSFVVSHADGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHIC 300
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
QGSINSI+FS DG +LATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT
Sbjct: 301 QGSINSISFSMDGAFLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 360
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PNS+ ET+MYRFGSVGQDT
Sbjct: 361 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDT 420
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478
+LLLWDLEMDEIVVPLRR P GGSPT+STGSQS+HWDNV P+GTLQPAPSM DVPK+SPL
Sbjct: 421 QLLLWDLEMDEIVVPLRRPP-GGSPTYSTGSQSSHWDNVVPLGTLQPAPSMLDVPKISPL 479
Query: 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKP 535
VAHRVHTEPLSGLIFTQESVLT CREGHIKIWMRPGVAESQSS+SE +L+T+ K+KP
Sbjct: 480 VAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSTSENLLATNLKEKP 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537537|ref|XP_003537283.1| PREDICTED: WD repeat-containing protein 20-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/554 (81%), Positives = 494/554 (89%), Gaps = 8/554 (1%)
Query: 1 MINTANGMISQSSSSAN------AQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKT 54
M+N +NGMIS++SSS+N +QS GLK +FKTPEGRYKLH +KTYPS LLHYAHGKT
Sbjct: 1 MMNNSNGMISKTSSSSNTAQSQQSQSTGLKMHFKTPEGRYKLHCDKTYPSTLLHYAHGKT 60
Query: 55 VTQATLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKS 114
V+Q TLAHLK+KP P TPT S+FSA+SGV RSAAA+L G NG R+L F GGNG SK+
Sbjct: 61 VSQVTLAHLKDKPVPLTPTGQSSTFSATSGV-RSAAARLWGGSNGGRSLSFVGGNGTSKN 119
Query: 115 ISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS 174
+ G+SRIGS+GASSSS S TN+NFDG GTY+IFNVGDAIFISDLNSQDKDP+KSIHFSNS
Sbjct: 120 LGGNSRIGSIGASSSSNSTTNSNFDGNGTYLIFNVGDAIFISDLNSQDKDPVKSIHFSNS 179
Query: 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT 234
NP CHAFDQD+KDGHDL+IGLN+GDVYSVSLRQQLQDVGKKLVGA HYNKDGSVNNSRCT
Sbjct: 180 NPTCHAFDQDSKDGHDLIIGLNTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCT 239
Query: 235 SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294
+ WVPGGD AFVV HADGNLYVYEK+KD AGDSSF V+KDQTQFSV+H R SKSNPIAR
Sbjct: 240 CIAWVPGGDAAFVVAHADGNLYVYEKNKDSAGDSSFAVVKDQTQFSVSHARNSKSNPIAR 299
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354
WHICQGSINSI+FSTDGTY+ATVGRDGYLRVFDY KEQLICGGKSYYGALLCCAWSMDGK
Sbjct: 300 WHICQGSINSISFSTDGTYIATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGK 359
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PNS+ ET+ YRFGSV
Sbjct: 360 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDDEETIRYRFGSV 419
Query: 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474
GQDT+LLLWDLEMDEIVVPLRR P GGSPT+S GSQS+ WD+V P+GTLQPAPSM DVPK
Sbjct: 420 GQDTQLLLWDLEMDEIVVPLRR-PSGGSPTYSAGSQSSQWDSVVPLGTLQPAPSMLDVPK 478
Query: 475 LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDK 534
+SPLV HRVHTEPLSGLIFTQESVLT CREGHIKIW+RP AESQSS+SET+LST K+K
Sbjct: 479 ISPLVTHRVHTEPLSGLIFTQESVLTACREGHIKIWIRPAAAESQSSNSETLLSTGLKEK 538
Query: 535 PLLSSKVVTSSYRQ 548
PL+ SK+ SS+RQ
Sbjct: 539 PLILSKIGNSSHRQ 552
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068693|ref|XP_002326176.1| predicted protein [Populus trichocarpa] gi|222833369|gb|EEE71846.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/549 (86%), Positives = 503/549 (91%), Gaps = 2/549 (0%)
Query: 1 MINTANGMISQSSSSANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATL 60
MINT+NGMIS SS+SAN QSPGLKTYFKTPEGRYKLHYEKT+PSGLLHYAHGKT TQ TL
Sbjct: 1 MINTSNGMISTSSTSANPQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTATQVTL 60
Query: 61 AHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGF-GGGNGGSKSISGSS 119
A+LK+KPAPSTPTAPPSSFSASSGV RSAAA+LLG NGSR L F GG G S SS
Sbjct: 61 ANLKDKPAPSTPTAPPSSFSASSGV-RSAAARLLGGSNGSRALSFVGGNGGSKSISSSSS 119
Query: 120 RIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCH 179
RIGSLGASSSS SM NTNFDGKGTY+IFNVGDAIFISDLNS DKDPIKSIHFSNSNPVCH
Sbjct: 120 RIGSLGASSSSNSMINTNFDGKGTYLIFNVGDAIFISDLNSPDKDPIKSIHFSNSNPVCH 179
Query: 180 AFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV 239
AFDQDAKDGHD L+GL+SGDVYSVSLRQQLQDVGKKLVGA HYNKDGS+ RC S+ WV
Sbjct: 180 AFDQDAKDGHDFLVGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSLKRHRCMSIAWV 239
Query: 240 PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299
PGGDGAFVV HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV+H RYSKSNPIARWH+ Q
Sbjct: 240 PGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVSHARYSKSNPIARWHVSQ 299
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
GSIN IAFSTDGTYLATVGRDGYLRVFDY KEQLICGGKSYYGALLCCAWSMD KYILTG
Sbjct: 300 GSINGIAFSTDGTYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDVKYILTG 359
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
GEDDLVQVWSMEDRKVVAWGEGH+SWVSGVAFDSYWS PNSDGT E V+YRFGSVGQDT+
Sbjct: 360 GEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDSYWSSPNSDGTGENVVYRFGSVGQDTQ 419
Query: 420 LLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479
LLLWDLEMDEIVVPLRR P GGSPTFSTGSQS+HWD+V PVGTLQPAPSMRDVPKLSP++
Sbjct: 420 LLLWDLEMDEIVVPLRRCPPGGSPTFSTGSQSSHWDSVIPVGTLQPAPSMRDVPKLSPVL 479
Query: 480 AHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSS 539
AHRVHTEPLSGL+F QESVLTVCREGHIKIWMRPG +ESQS +SET+LSTS K+KPLLSS
Sbjct: 480 AHRVHTEPLSGLVFRQESVLTVCREGHIKIWMRPGTSESQSGNSETILSTSLKEKPLLSS 539
Query: 540 KVVTSSYRQ 548
K +S+Y+Q
Sbjct: 540 KTGSSAYKQ 548
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548238|ref|XP_003542510.1| PREDICTED: probable catabolite repression protein creC-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/548 (81%), Positives = 495/548 (90%), Gaps = 3/548 (0%)
Query: 2 INTANGMISQSSS-SANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATL 60
+ ANG+IS +SS +A +QS GLKTYFKT EGRYKL+Y+KTYPS LLHYAHGKTV+Q TL
Sbjct: 1 MKNANGLISTTSSNTAQSQSTGLKTYFKTHEGRYKLYYDKTYPSTLLHYAHGKTVSQVTL 60
Query: 61 AHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSR 120
AHLK+KP PSTPT S+FSA+SG VRSAA +L G NG R+L F GGNG SK++ G+SR
Sbjct: 61 AHLKDKPVPSTPTGQSSTFSATSG-VRSAAVRLWGGSNGGRSLSFVGGNGTSKNLGGNSR 119
Query: 121 IGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA 180
IGS+GASSSS + +N+NFDGKGTY+IFNVGDAIFISDLNSQDKDP+KSIHFSNSNP+CHA
Sbjct: 120 IGSIGASSSSNATSNSNFDGKGTYLIFNVGDAIFISDLNSQDKDPVKSIHFSNSNPMCHA 179
Query: 181 FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP 240
FDQD+KDGHDL+IGLN+GDVYSVSLRQQLQDVGKKLVGA HYNKDGSVNNS CT + WVP
Sbjct: 180 FDQDSKDGHDLIIGLNTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSHCTCIAWVP 239
Query: 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300
GGDGAFVVGHADGNLYVYEK++DGAGDSSF V+KDQTQFSV+H RYSKSNPIARWHICQG
Sbjct: 240 GGDGAFVVGHADGNLYVYEKNRDGAGDSSFTVVKDQTQFSVSHARYSKSNPIARWHICQG 299
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
SI+SI+FSTDGTY+ATVGRDGYLRVFDY KEQLICGGKSYYGALLCCAWSMDGKYILTGG
Sbjct: 300 SIDSISFSTDGTYIATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGG 359
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PNS+ ETV YRFGSVGQDT+L
Sbjct: 360 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNEETVRYRFGSVGQDTQL 419
Query: 421 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480
LLWDLEMDEIVVPLRR P GGSPT+S GSQS+ WD+V P+GTLQPAPSM DV K+SPLV
Sbjct: 420 LLWDLEMDEIVVPLRR-PSGGSPTYSAGSQSSQWDSVVPLGTLQPAPSMLDVLKISPLVT 478
Query: 481 HRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSSK 540
HRVHTEPLSGLIFTQESVLT CREGHIKIW+RP AESQSS++ET+LSTS K+KP + SK
Sbjct: 479 HRVHTEPLSGLIFTQESVLTACREGHIKIWIRPAAAESQSSNAETLLSTSLKEKPSILSK 538
Query: 541 VVTSSYRQ 548
V SS+RQ
Sbjct: 539 VGNSSHRQ 546
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505212|ref|XP_003521386.1| PREDICTED: WD repeat-containing protein 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/537 (86%), Positives = 494/537 (91%), Gaps = 3/537 (0%)
Query: 1 MINTANG-MISQSSSSANA-QSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQA 58
M+NTANG MIS SSSS A QSPGLKTYFKTPEGRYKL YEKT+PSGLLHYAHGKTVTQ
Sbjct: 1 MMNTANGTMISPSSSSGTAAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQV 60
Query: 59 TLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGS 118
TLAHLK+KPAPSTPTA SS ++S VRSAAA+LLG NGSR L F GGNGGSKS G+
Sbjct: 61 TLAHLKDKPAPSTPTASSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGN 120
Query: 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC 178
+RI S+GASS+S++M N NFDGKGTY+IFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC
Sbjct: 121 TRISSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVC 180
Query: 179 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW 238
H FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA HYNKDGSVNNSRCT + W
Sbjct: 181 HTFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAW 240
Query: 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 298
VPGGDG+FVV H DGNLYVYEK+KDGAGDSSFPV+KDQTQFSVAH RYSKSNPIARWHIC
Sbjct: 241 VPGGDGSFVVSHTDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHIC 300
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
QGSINSI+FS DG YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT
Sbjct: 301 QGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 360
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW+ PNS+ ETV YRFGSVGQDT
Sbjct: 361 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSNDNGETVTYRFGSVGQDT 420
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478
+LLLWDLEMDEIVVPLRR P GGSPT+STGSQS+HWDNV P+GTLQPAPSMRDVPK+SPL
Sbjct: 421 QLLLWDLEMDEIVVPLRRPP-GGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPL 479
Query: 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKP 535
VAHRVHTEPLSGLIFTQESVLT CREGHIKIWMRPGVAESQSS+SE +L+TS K+KP
Sbjct: 480 VAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSNSENLLATSLKEKP 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557026|ref|XP_002519546.1| nucleotide binding protein, putative [Ricinus communis] gi|223541409|gb|EEF42960.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/550 (85%), Positives = 489/550 (88%), Gaps = 13/550 (2%)
Query: 1 MINTANGMISQSSSSANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATL 60
MINT NGMIS SS+S N QSPGLKTYFKTPEGRYKLHYEKT+PSGLLHYAHGKTVTQ TL
Sbjct: 1 MINTTNGMISTSSASGNTQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTL 60
Query: 61 AHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSR 120
A+LK+KPAPSTPT SSFSASSGV RSAAA+LLG GNGSR L F GGNGGSKS+SGSSR
Sbjct: 61 ANLKDKPAPSTPTGSASSFSASSGV-RSAAARLLGAGNGSRALSFVGGNGGSKSVSGSSR 119
Query: 121 IGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA 180
IGSLGASSSS SM N NFDGKGTY+IFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA
Sbjct: 120 IGSLGASSSSNSMINPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA 179
Query: 181 FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN--SRCTSVTW 238
FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA HYNKDGSVNN RCTS+TW
Sbjct: 180 FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNRQDRCTSITW 239
Query: 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC 298
VPGGDGAFVV HADGNLYVYEKSKDGAGDSSFPVIKD TQFSVAH RYSK +
Sbjct: 240 VPGGDGAFVVAHADGNLYVYEKSKDGAGDSSFPVIKDLTQFSVAHARYSKVQDLI----- 294
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
S+N I V GYLRVFDY KEQLICGGKSYYGALLCCAWSMDGKYILT
Sbjct: 295 -SSLNKITL----VMFFRVNNAGYLRVFDYIKEQLICGGKSYYGALLCCAWSMDGKYILT 349
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PNSDGT ET+MYRFGSVGQDT
Sbjct: 350 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSDGTGETIMYRFGSVGQDT 409
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478
+LLLWDLEMDEIVVPLRR P GGSPTFSTGSQS+HWDNV PVGTLQPAPSMRDVPKLSP+
Sbjct: 410 QLLLWDLEMDEIVVPLRRCPPGGSPTFSTGSQSSHWDNVVPVGTLQPAPSMRDVPKLSPV 469
Query: 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLS 538
V+HRVHTEPL GL+FTQESVLTVCREGHIKIWMRPG AESQ+ +SETVLS+S KDKPLLS
Sbjct: 470 VSHRVHTEPLFGLLFTQESVLTVCREGHIKIWMRPGTAESQTGNSETVLSSSLKDKPLLS 529
Query: 539 SKVVTSSYRQ 548
SK +SSY+Q
Sbjct: 530 SKTGSSSYKQ 539
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42565893|ref|NP_190907.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332645558|gb|AEE79079.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/561 (78%), Positives = 494/561 (88%), Gaps = 16/561 (2%)
Query: 1 MINTANGMISQSSSSA----NAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVT 56
M+NT+NGMIS SSS+ N QSPG+KTYFKTPEG+YKLHYEKT+ SGLLHYAHGKTVT
Sbjct: 1 MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVT 60
Query: 57 QATLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSIS 116
Q T+A LKE+ APSTPT S +SASSG RSA A+LLGTGNGSR L F GGNGG KS+S
Sbjct: 61 QVTIAQLKERAAPSTPTGTSSGYSASSGF-RSATARLLGTGNGSRALSFVGGNGGGKSVS 119
Query: 117 GSSRI-GSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSN 175
SSRI GS AS+S+TSMTNTNFDGKGTY++FNV DAIFI DLNSQ+KDP+KSIHFSNSN
Sbjct: 120 TSSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSN 179
Query: 176 PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS 235
P+CHAFD DAKDGHDLLIGLNSGDVY+VSLRQQLQDV KKLVGA HYNKDGSVNNSRCTS
Sbjct: 180 PMCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTS 239
Query: 236 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW 295
++WVPGGDGAFVV HADGNLYVYEK+KDGA +S+FP I+D TQFSV +YSKSNP+ARW
Sbjct: 240 ISWVPGGDGAFVVAHADGNLYVYEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARW 299
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
HICQGSINSIAFS DG +LATVGRDGYLR+FD+ ++L+CGGKSYYGALLCC+WSMDGKY
Sbjct: 300 HICQGSINSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKY 359
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS WS PNSDG+ E VMYRFGSVG
Sbjct: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVG 419
Query: 416 QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475
QDT+LLLWDLEMDEIVVPLRR P GGSPT+STGS SAHWDNV P+GTLQPAP RDVPKL
Sbjct: 420 QDTQLLLWDLEMDEIVVPLRRAP-GGSPTYSTGS-SAHWDNVIPMGTLQPAPCKRDVPKL 477
Query: 476 SPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSE-----TVLSTS 530
SP++AHRVHTEPLSGL+FTQESV+T CREGHIKIW RP +E+Q++SSE +LSTS
Sbjct: 478 SPIIAHRVHTEPLSGLMFTQESVVTACREGHIKIWTRPSESETQTNSSEANPTTALLSTS 537
Query: 531 -SKD-KPLLSSKVVT-SSYRQ 548
+KD K LSSK+++ S+++Q
Sbjct: 538 FTKDNKASLSSKIISGSTFKQ 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548240|ref|XP_003542511.1| PREDICTED: probable catabolite repression protein creC-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/569 (78%), Positives = 495/569 (86%), Gaps = 24/569 (4%)
Query: 2 INTANGMISQSSS-SANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQA-- 58
+ ANG+IS +SS +A +QS GLKTYFKT EGRYKL+Y+KTYPS LLHYAHGKTV+Q
Sbjct: 1 MKNANGLISTTSSNTAQSQSTGLKTYFKTHEGRYKLYYDKTYPSTLLHYAHGKTVSQVAL 60
Query: 59 -------------------TLAHLKEKPAPSTPTAPPSSFSASSGVVRSAAAKLLGTGNG 99
TLAHLK+KP PSTPT S+FSA+SGV RSAA +L G NG
Sbjct: 61 LFFFSPLSYSAFAILFCIVTLAHLKDKPVPSTPTGQSSTFSATSGV-RSAAVRLWGGSNG 119
Query: 100 SRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLN 159
R+L F GGNG SK++ G+SRIGS+GASSSS + +N+NFDGKGTY+IFNVGDAIFISDLN
Sbjct: 120 GRSLSFVGGNGTSKNLGGNSRIGSIGASSSSNATSNSNFDGKGTYLIFNVGDAIFISDLN 179
Query: 160 SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA 219
SQDKDP+KSIHFSNSNP+CHAFDQD+KDGHDL+IGLN+GDVYSVSLRQQLQDVGKKLVGA
Sbjct: 180 SQDKDPVKSIHFSNSNPMCHAFDQDSKDGHDLIIGLNTGDVYSVSLRQQLQDVGKKLVGA 239
Query: 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279
HYNKDGSVNNS CT + WVPGGDGAFVVGHADGNLYVYEK++DGAGDSSF V+KDQTQF
Sbjct: 240 QHYNKDGSVNNSHCTCIAWVPGGDGAFVVGHADGNLYVYEKNRDGAGDSSFTVVKDQTQF 299
Query: 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS 339
SV+H RYSKSNPIARWHICQGSI+SI+FSTDGTY+ATVGRDGYLRVFDY KEQLICGGKS
Sbjct: 300 SVSHARYSKSNPIARWHICQGSIDSISFSTDGTYIATVGRDGYLRVFDYLKEQLICGGKS 359
Query: 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399
YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS PN
Sbjct: 360 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPN 419
Query: 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCP 459
S+ ETV YRFGSVGQDT+LLLWDLEMDEIVVPLRR P GGSPT+S GSQS+ WD+V P
Sbjct: 420 SNDNEETVRYRFGSVGQDTQLLLWDLEMDEIVVPLRR-PSGGSPTYSAGSQSSQWDSVVP 478
Query: 460 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQ 519
+GTLQPAPSM DV K+SPLV HRVHTEPLSGLIFTQESVLT CREGHIKIW+RP AESQ
Sbjct: 479 LGTLQPAPSMLDVLKISPLVTHRVHTEPLSGLIFTQESVLTACREGHIKIWIRPAAAESQ 538
Query: 520 SSSSETVLSTSSKDKPLLSSKVVTSSYRQ 548
SS++ET+LSTS K+KP + SKV SS+RQ
Sbjct: 539 SSNAETLLSTSLKEKPSILSKVGNSSHRQ 567
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 548 | ||||||
| TAIR|locus:2083996 | 558 | AT3G53390 "AT3G53390" [Arabido | 0.996 | 0.978 | 0.676 | 5.2e-207 | |
| MGI|MGI:1918198 | 567 | Wdr20b "WD repeat domain 20b" | 0.448 | 0.433 | 0.403 | 2.3e-60 | |
| MGI|MGI:94907 | 665 | Dmwd "dystrophia myotonica-con | 0.531 | 0.437 | 0.351 | 1.2e-54 | |
| UNIPROTKB|Q09019 | 674 | DMWD "Dystrophia myotonica WD | 0.427 | 0.347 | 0.389 | 6e-54 | |
| UNIPROTKB|A2QVV2 | 591 | creC "Probable catabolite repr | 0.647 | 0.600 | 0.349 | 7e-54 | |
| UNIPROTKB|B0Y7H6 | 566 | creC "Probable catabolite repr | 0.636 | 0.616 | 0.354 | 4.9e-53 | |
| UNIPROTKB|Q4WN25 | 566 | creC "Probable catabolite repr | 0.636 | 0.616 | 0.354 | 4.9e-53 | |
| UNIPROTKB|Q0CKB1 | 588 | creC "Probable catabolite repr | 0.649 | 0.605 | 0.342 | 2.7e-52 | |
| UNIPROTKB|B8N4F5 | 572 | creC "Probable catabolite repr | 0.647 | 0.620 | 0.338 | 4.4e-52 | |
| UNIPROTKB|Q2UM42 | 572 | creC "Probable catabolite repr | 0.647 | 0.620 | 0.338 | 4.4e-52 |
| TAIR|locus:2083996 AT3G53390 "AT3G53390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2002 (709.8 bits), Expect = 5.2e-207, P = 5.2e-207
Identities = 379/560 (67%), Positives = 422/560 (75%)
Query: 1 MINTANGMIXXXXXXXXXXX----PGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVT 56
M+NT+NGMI PG+KTYFKTPEG+YKLHYEKT+ SGLLHYAHGKTVT
Sbjct: 1 MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVT 60
Query: 57 QATLAHLKEKXXXXXXXXXXXXXXXXXXXXXXXXXKLLXXXXXXXXXXXXXXXXXXXXXX 116
Q T+A LKE+ L
Sbjct: 61 QVTIAQLKERAAPSTPTGTSSGYSASSGFRSATARLLGTGNGSRALSFVGGNGGGKSVST 120
Query: 117 XXXXXXXXXXXXXXXXMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNP 176
MTNTNFDGKGTY++FNV DAIFI DLNSQ+KDP+KSIHFSNSNP
Sbjct: 121 SSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSNP 180
Query: 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSV 236
+CHAFD DAKDGHDLLIGLNSGDVY+VSLRQQLQDV KKLVGA HYNKDGSVNNSRCTS+
Sbjct: 181 MCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTSI 240
Query: 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296
+WVPGGDGAFVV HADGNLYVYEK+KDGA +S+FP I+D TQFSV +YSKSNP+ARWH
Sbjct: 241 SWVPGGDGAFVVAHADGNLYVYEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARWH 300
Query: 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356
ICQGSINSIAFS DG +LATVGRDGYLR+FD+ ++L+CGGKSYYGALLCC+WSMDGKYI
Sbjct: 301 ICQGSINSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYI 360
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS WS PNSDG+ E VMYRFGSVGQ
Sbjct: 361 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVGQ 420
Query: 417 DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476
DT+LLLWDLEMDEIVVPLRR P GGSPT+STGS SAHWDNV P+GTLQPAP RDVPKLS
Sbjct: 421 DTQLLLWDLEMDEIVVPLRRAP-GGSPTYSTGS-SAHWDNVIPMGTLQPAPCKRDVPKLS 478
Query: 477 PLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAXXXXXXXXXX------XXXX 530
P++AHRVHTEPLSGL+FTQESV+T CREGHIKIW RP +
Sbjct: 479 PIIAHRVHTEPLSGLMFTQESVVTACREGHIKIWTRPSESETQTNSSEANPTTALLSTSF 538
Query: 531 XKD-KPLLSSKVVT-SSYRQ 548
KD K LSSK+++ S+++Q
Sbjct: 539 TKDNKASLSSKIISGSTFKQ 558
|
|
| MGI|MGI:1918198 Wdr20b "WD repeat domain 20b" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
Identities = 106/263 (40%), Positives = 146/263 (55%)
Query: 140 GKGTYIIFNVGDAIFISDLNSQDK--D---PIKSIHFSNSNPVCHAFDQ--DAKDGHDLL 192
G G + F+VG +++ K D PI + + P CH F+ + LL
Sbjct: 60 GNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLL 119
Query: 193 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252
+G ++G V QL D KK + +N++ ++ SR T V WVPG D F+V H+
Sbjct: 120 VGFSAGQV-------QLIDPIKKET-SKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSS 171
Query: 253 GNLYVYEKSKD-GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311
GN+Y Y G + ++K F+V H SKS +W + +G++N AFS DG
Sbjct: 172 GNMYSYNVEHTYGTTAPHYQLLKQGESFAV-HNCKSKSTRDLKWTVGEGALNEFAFSPDG 230
Query: 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371
+LA V +DG+LRVF++ +L KSY+G LLC WS DGKYI+TGGEDDLV VWS
Sbjct: 231 KFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFL 290
Query: 372 DRKVVAWGEGHNSWVSGVAFDSY 394
D +V+A G GH SWVS VAFD Y
Sbjct: 291 DCRVIARGRGHKSWVSVVAFDPY 313
|
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| MGI|MGI:94907 Dmwd "dystrophia myotonica-containing WD repeat motif" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 114/324 (35%), Positives = 168/324 (51%)
Query: 157 DLNSQDKDPIKSIHFSNSNPVCHAFDQ--DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214
DLN PI + + P CH F+Q A + LL+G ++G V + L ++ D K
Sbjct: 147 DLNK----PIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKK--DTSK 200
Query: 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS-SFPVI 273
+N++ ++ ++ T + W+P + F+ HA G+LY+Y S + ++
Sbjct: 201 L------FNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCTSTPPQYSLL 254
Query: 274 KDQTQFSVAHPRYSKS--NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331
K F+V + SK+ NP+A+W + +G +N AFS DG +LA V +DG LRVF +
Sbjct: 255 KQGEGFAV-YAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDS- 312
Query: 332 QLICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
L+ G KSY+G LLC WS DG+Y++TGGEDDLV VWS + +VVA G GH SWV+ VA
Sbjct: 313 MLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVA 372
Query: 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS- 449
FD Y ++ +A G++ + + V PL P GS T+ GS
Sbjct: 373 FDPYTTRAEEAASASA---DGDPSGEEEEPEVTSSDTGAPVSPL---PKAGSITYRFGSA 426
Query: 450 ----QSAHWDNVCPVGTLQPAPSM 469
Q WD V L P PS+
Sbjct: 427 GQDTQFCLWDLTEDV--LSPHPSL 448
|
|
| UNIPROTKB|Q09019 DMWD "Dystrophia myotonica WD repeat-containing protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 6.0e-54, Sum P(3) = 6.0e-54
Identities = 99/254 (38%), Positives = 145/254 (57%)
Query: 157 DLNSQDKDPIKSIHFSNSNPVCHAFDQ--DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214
DLN PI + + P CH F+Q A + LL+G ++G V + L ++ D K
Sbjct: 150 DLNK----PIDKRIYKGTQPTCHDFNQFTAATETISLLVGFSAGQVQYLDLIKK--DTSK 203
Query: 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG-DSSFPVI 273
+N++ ++ ++ T + W+P + F+ HA G+LY+Y S A + ++
Sbjct: 204 L------FNEERLIDKTKVTYLKWLPESESLFLASHASGHLYLYNVSHPCASAPPQYSLL 257
Query: 274 KDQTQFSVAHPRYSKS--NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331
K FSV + SK+ NP+A+W + +G +N AFS DG +LA V +DG LRVF +
Sbjct: 258 KQGEGFSV-YAAKSKAPRNPLAKWAVGEGPLNEFAFSPDGRHLACVSQDGCLRVFHFDS- 315
Query: 332 QLICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390
L+ G KSY+G LLC WS DG+Y++TGGEDDLV VWS + +VVA G GH SWV+ VA
Sbjct: 316 MLLRGLMKSYFGGLLCVCWSPDGRYVVTGGEDDLVTVWSFTEGRVVARGHGHKSWVNAVA 375
Query: 391 FDSYWSQPNSDGTA 404
FD Y ++ TA
Sbjct: 376 FDPYTTRAEEAATA 389
|
|
| UNIPROTKB|A2QVV2 creC "Probable catabolite repression protein creC" [Aspergillus niger CBS 513.88 (taxid:425011)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 143/409 (34%), Positives = 207/409 (50%)
Query: 142 GTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKD-GH-DLLIGLNSG 198
G + N+ A DL+++ K+ P+ I F+ ++ + H ++ K H D+++G ++G
Sbjct: 169 GLFAFANINRAFQWLDLSAKQKEEPVTKILFTKAHMISHDINELTKSTSHIDVVMGSSAG 228
Query: 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258
D+ + + +K NK+G VNNS T + W+PG + F+ HA+G L VY
Sbjct: 229 DII------WYEPMSQKYA---RINKNGVVNNSPVTHIKWIPGSENLFMAAHANGQLVVY 279
Query: 259 EKSKDGA------GDSSFPVIKDQTQFSV------AHPRYSKSNPIARWHICQGSINSIA 306
+K K+ A G S +K + S + R K+NP+A W + I A
Sbjct: 280 DKEKEDALFAPELGSPSAETMKSSSGRSPLQILKSVNSRNQKTNPVALWKLANQKITQFA 339
Query: 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366
FS D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+DDLV
Sbjct: 340 FSPDRRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDDLVT 399
Query: 367 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+WS+ +RK+VA +GHNSWVS VAFD W D T YRFGSVG D RLLLWD
Sbjct: 400 IWSLPERKIVARCQGHNSWVSAVAFDP-WRC--DDRT-----YRFGSVGDDCRLLLWDFS 451
Query: 427 MDEIVVPL----------------------RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ 464
+ + P R GG+ T S ++A N
Sbjct: 452 VGMLHRPRVHQANARQRTSMIVSNTQHLNRHRADSGGNRTRSDSQETADTYNSYDPTVRH 511
Query: 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V +P+ L F ++S++T EGHI+ W RP
Sbjct: 512 PVEPRARTALLPPIMSKIVGEDPICWLGFQEDSIMTSSLEGHIRTWDRP 560
|
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| UNIPROTKB|B0Y7H6 creC "Probable catabolite repression protein creC" [Aspergillus fumigatus A1163 (taxid:451804)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 145/409 (35%), Positives = 203/409 (49%)
Query: 141 KGTYIIFNVGDAIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKD-GH-DLLIGLNS 197
+G + N+ A DL+S+ K DP+ I F+ ++ +CH ++ K H D+++G ++
Sbjct: 144 EGLFAFANINRAFQWLDLSSKQKEDPLAKILFTKAHMLCHDINEVTKSPSHIDVVMGSSA 203
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V NS T + W+PG + F+ HA+G L V
Sbjct: 204 GDII------WYEPISQKYA---RINKNGVVCNSPVTHIKWIPGSENLFMASHANGQLVV 254
Query: 258 YEKSKDGA------GDSSFPVIK-DQTQ----FSVAHPRYSKSNPIARWHICQGSINSIA 306
Y+K K+ A D S +K TQ + R K+NP+A W + I+ A
Sbjct: 255 YDKEKEDALFTPEIQDQSAEAVKASSTQPLQVLKSVNSRNQKTNPVALWKLANQRISHFA 314
Query: 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366
FS D +LA V DG LRV DY KE YYG L+C WS DGKYI+TGG+DDLV
Sbjct: 315 FSPDQRHLAVVLEDGSLRVMDYLKED-------YYGGLICVCWSPDGKYIVTGGQDDLVT 367
Query: 367 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+WS +RK+VA +GHNSWVS VAFD W + YRFGSVG D RLLLWD
Sbjct: 368 IWSFPERKIVARCQGHNSWVSAVAFDP-WQ-------CDERTYRFGSVGDDCRLLLWDFS 419
Query: 427 MDEIVVPL--------RRGPLGGSPTF-------STG----SQSAHWDNV---CPVGTLQ 464
+ + P R + GS + S G S S N C
Sbjct: 420 VGMLHRPKVHQTSARQRTSMVAGSSQYGNRHRADSVGNRMRSDSQRTANTYESCDQAVRH 479
Query: 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V T+P+ L F ++ ++T EGHI+ W RP
Sbjct: 480 PVEPRARTALLPPIMSKVVGTDPICWLGFQEDCIMTSSLEGHIRTWDRP 528
|
|
| UNIPROTKB|Q4WN25 creC "Probable catabolite repression protein creC" [Aspergillus fumigatus Af293 (taxid:330879)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 145/409 (35%), Positives = 203/409 (49%)
Query: 141 KGTYIIFNVGDAIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKD-GH-DLLIGLNS 197
+G + N+ A DL+S+ K DP+ I F+ ++ +CH ++ K H D+++G ++
Sbjct: 144 EGLFAFANINRAFQWLDLSSKQKEDPLAKILFTKAHMLCHDINEVTKSPSHIDVVMGSSA 203
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V NS T + W+PG + F+ HA+G L V
Sbjct: 204 GDII------WYEPISQKYA---RINKNGVVCNSPVTHIKWIPGSENLFMASHANGQLVV 254
Query: 258 YEKSKDGA------GDSSFPVIK-DQTQ----FSVAHPRYSKSNPIARWHICQGSINSIA 306
Y+K K+ A D S +K TQ + R K+NP+A W + I+ A
Sbjct: 255 YDKEKEDALFTPEIQDQSAEAVKASSTQPLQVLKSVNSRNQKTNPVALWKLANQRISHFA 314
Query: 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366
FS D +LA V DG LRV DY KE YYG L+C WS DGKYI+TGG+DDLV
Sbjct: 315 FSPDQRHLAVVLEDGSLRVMDYLKED-------YYGGLICVCWSPDGKYIVTGGQDDLVT 367
Query: 367 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+WS +RK+VA +GHNSWVS VAFD W + YRFGSVG D RLLLWD
Sbjct: 368 IWSFPERKIVARCQGHNSWVSAVAFDP-WQ-------CDERTYRFGSVGDDCRLLLWDFS 419
Query: 427 MDEIVVPL--------RRGPLGGSPTF-------STG----SQSAHWDNV---CPVGTLQ 464
+ + P R + GS + S G S S N C
Sbjct: 420 VGMLHRPKVHQTSARQRTSMVAGSSQYGNRHRADSVGNRMRSDSQRTANTYESCDQAVRH 479
Query: 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P L P+++ V T+P+ L F ++ ++T EGHI+ W RP
Sbjct: 480 PVEPRARTALLPPIMSKVVGTDPICWLGFQEDCIMTSSLEGHIRTWDRP 528
|
|
| UNIPROTKB|Q0CKB1 creC "Probable catabolite repression protein creC" [Aspergillus terreus NIH2624 (taxid:341663)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 138/403 (34%), Positives = 204/403 (50%)
Query: 141 KGTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKDG-H-DLLIGLNS 197
+G + N+ A DL S+ K+ P+ I F+ ++ + H ++ K H D+++G ++
Sbjct: 168 EGLFAFANINRAFQWLDLGSKQKEEPLAKILFTKAHMLSHDINELTKSASHIDVVMGSSA 227
Query: 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257
GD+ + + +K NK+G V NS T + WVPG + F+ HA+G L V
Sbjct: 228 GDII------WYEPISQKYA---RINKNGVVCNSPVTHIKWVPGSENLFMAAHANGQLVV 278
Query: 258 YEKSKDGAGDSSFPVIKDQTQ-----FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312
Y+K K+ A + +K Q + R K+NP+A W + I AFS D
Sbjct: 279 YDKEKEDALFTPEEPVKSSGQQPLQVLKSVNSRNQKTNPVALWKLANQKITQFAFSPDQR 338
Query: 313 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372
+LA V DG LRV DY +E+++ +SYYG L+C WS DGKYI+TGG+DDLV +WS +
Sbjct: 339 HLAVVLEDGSLRVMDYLEEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDDLVTIWSFPE 398
Query: 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432
RK+VA +GHNSWVS VAFD W + YRFGSVG D RLLLWD + +
Sbjct: 399 RKIVARCQGHNSWVSTVAFDP-WR-------CDERTYRFGSVGDDCRLLLWDFSVGMLHR 450
Query: 433 PLRRGPLGGSPT--FSTGSQSAHWDNVCPVGTLQPAPSMRDV---------------PK- 474
P T ++ SQ A G + S R P+
Sbjct: 451 PRAHQASTRQRTSMITSNSQHASRHRADSAGNRARSDSQRTADGYDEYDQAVRHPVEPRA 510
Query: 475 ----LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
L P+++ + ++P+ L F ++S++T EGHI+ W RP
Sbjct: 511 RTALLPPIMSKEIGSDPICWLGFQEDSIMTSSLEGHIRTWDRP 553
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| UNIPROTKB|B8N4F5 creC "Probable catabolite repression protein creC" [Aspergillus flavus NRRL3357 (taxid:332952)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 138/408 (33%), Positives = 210/408 (51%)
Query: 142 GTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKDG-H-DLLIGLNSG 198
G + N+ A DL+S++K+ P+ I F+ ++ + H ++ K H D+ +G ++G
Sbjct: 146 GLFAFANINRAFQWLDLSSKNKEEPLAKILFTKAHMLTHDINELTKSSSHIDIAMGSSAG 205
Query: 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258
D+ + + +K NK+G V+NS T + W+PG + F+ HA+G L VY
Sbjct: 206 DII------WYEPISQKYA---RINKNGVVSNSPVTHIKWIPGSENMFMAAHANGQLVVY 256
Query: 259 EKSKDGA------GDSSFPVIKDQTQFSV-----AHPRYSKSNPIARWHICQGSINSIAF 307
+K K+ A + S +K ++ + + R K+NP+A W + I+ AF
Sbjct: 257 DKEKEDALFTPEISNHSAEAMKASSRLPLQVLKSVNSRNQKTNPVALWKLANQKISQFAF 316
Query: 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367
S D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+DDLV +
Sbjct: 317 SPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDDLVTI 376
Query: 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427
WS +RK+VA +GHNSWVS VAFD W + YRFGSVG D RLLLWD +
Sbjct: 377 WSFPERKIVARCQGHNSWVSTVAFDP-WR-------CDERTYRFGSVGDDCRLLLWDFSV 428
Query: 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWD--------NVCPVGTLQPAPSMRDV------- 472
+ P T S + H++ N + + A + D
Sbjct: 429 GMLHRPRAHQASARQRTSMIASNTQHFNRHRADSASNRMRSDSQRTADTYNDYDSAVRHP 488
Query: 473 --PK-----LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P+ L P+++ V +P+ L F ++S++T EGHI+ W RP
Sbjct: 489 VEPRARTALLPPIMSKIVGDDPICWLGFQEDSIMTSSLEGHIRTWDRP 536
|
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| UNIPROTKB|Q2UM42 creC "Probable catabolite repression protein creC" [Aspergillus oryzae RIB40 (taxid:510516)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 138/408 (33%), Positives = 210/408 (51%)
Query: 142 GTYIIFNVGDAIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKDG-H-DLLIGLNSG 198
G + N+ A DL+S++K+ P+ I F+ ++ + H ++ K H D+ +G ++G
Sbjct: 146 GLFAFANINRAFQWLDLSSKNKEEPLAKILFTKAHMLTHDINELTKSSSHIDIAMGSSAG 205
Query: 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258
D+ + + +K NK+G V+NS T + W+PG + F+ HA+G L VY
Sbjct: 206 DII------WYEPISQKYA---RINKNGVVSNSPVTHIKWIPGSENMFMAAHANGQLVVY 256
Query: 259 EKSKDGA------GDSSFPVIKDQTQFSV-----AHPRYSKSNPIARWHICQGSINSIAF 307
+K K+ A + S +K ++ + + R K+NP+A W + I+ AF
Sbjct: 257 DKEKEDALFTPEISNHSAEAMKASSRLPLQVLKSVNSRNQKTNPVALWKLANQKISQFAF 316
Query: 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367
S D +LA V DG LRV DY KE+++ +SYYG L+C WS DGKYI+TGG+DDLV +
Sbjct: 317 SPDQRHLAVVLEDGSLRVMDYLKEEVLDIFRSYYGGLICVCWSPDGKYIVTGGQDDLVTI 376
Query: 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427
WS +RK+VA +GHNSWVS VAFD W + YRFGSVG D RLLLWD +
Sbjct: 377 WSFPERKIVARCQGHNSWVSTVAFDP-WR-------CDERTYRFGSVGDDCRLLLWDFSV 428
Query: 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWD--------NVCPVGTLQPAPSMRDV------- 472
+ P T S + H++ N + + A + D
Sbjct: 429 GMLHRPRAHQASARQRTSMIASNTQHFNRHRADSASNRMRSDSQRTADTYNDYDSAVRHP 488
Query: 473 --PK-----LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513
P+ L P+++ V +P+ L F ++S++T EGHI+ W RP
Sbjct: 489 VEPRARTALLPPIMSKIVGDDPICWLGFQEDSIMTSSLEGHIRTWDRP 536
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.XVI.2799.1 | hypothetical protein (557 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 548 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 34/220 (15%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
G + +AFS DG LAT DG ++V+D +L+ K + G + A S DG Y+ +G
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG 69
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
D +++W +E + V GH S+VS VAF + DG S +D
Sbjct: 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAF-------SPDGR-----ILSSS-SRDKT 116
Query: 420 LLLWDLEMDEIVVPLRRGPLGG--SPTFSTGSQ---SAHWDNVCPVGTLQPAPSMR--DV 472
+ +WD+E + + L RG S FS S+ D +++ D+
Sbjct: 117 IKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDG-----------TIKLWDL 164
Query: 473 PKLSPLVAHRVHTEPLSGLIF--TQESVLTVCREGHIKIW 510
+ HT ++ + F E +L+ +G IK+W
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+NS+AFS DGT++A+ +DG ++++D + + + G + A+S DG+ +L+
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSVGQ 416
D +++W + K + GH + V+ VAF D Y S +
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL---------------LASGSE 239
Query: 417 DTRLLLWDLEMDEIV 431
D + +WDL E V
Sbjct: 240 DGTIRVWDLRTGECV 254
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G +NS+AFS DG L + DG ++++D S + + + + + A+S DG + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G ED ++VW + + V GH + V+ +A+ DG R S D
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-------PDGK------RLASGSADG 283
Query: 419 RLLLWD 424
+ +WD
Sbjct: 284 TIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G + +A S DGTYLA+ D +R++D + + + + A+S DG+ + +
Sbjct: 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QD 417
D ++VW +E K + GH WV+ VAF P+ F + QD
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS-----PDG---------TFVASSSQD 156
Query: 418 TRLLLWDLE 426
+ LWDL
Sbjct: 157 GTIKLWDLR 165
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (149), Expect = 3e-10
Identities = 81/413 (19%), Positives = 145/413 (35%), Gaps = 56/413 (13%)
Query: 137 NFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195
F G ++ D I + DL++ +K IKS+ + + V + DG+ +L+
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGLHDSSV-SKLALSSPDGNSILLAS 129
Query: 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 255
+S D + + H + TS+ + P G DG +
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGH---------SESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YL 314
++ D + T ++S+AFS DG +
Sbjct: 181 KLW----DLRTGKPLSTLAGHT----------------------DPVSSLAFSPDGGLLI 214
Query: 315 ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DR 373
A+ DG +R++D S +L+ S + + ++S DG + +G D +++W +
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274
Query: 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433
++ GH+S V VAF S D + LWDLE +++
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKL-------------LASGSSDGTVRLWDLETGKLLSS 321
Query: 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493
L G S+ S S + G+ + D+ PL H+ LS
Sbjct: 322 LTL--KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS 379
Query: 494 TQESVLTVCRE-GHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSSKVVTSS 545
V++ G +++W + ++ T TS P S SS
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (125), Expect = 3e-07
Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 33/254 (12%)
Query: 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI 193
++ F G +I + I + ++S +S+ V +F DG L
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---PDGSLLAS 258
Query: 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253
G + G + LR + + S ++S SV + P G G +DG
Sbjct: 259 GSSDGTIRLWDLRSSSSLL-----------RTLSGHSSSVLSVAFSPDGK-LLASGSSDG 306
Query: 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR--------YSKSNPIARW---------- 295
+ +++ S + S++ S I W
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
++ S++FS DG +++ DG +R++D S L+ + + +S DGK
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426
Query: 356 ILTGGEDDLVQVWS 369
+ +G D+ +++W
Sbjct: 427 LASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 4e-05
Identities = 49/304 (16%), Positives = 92/304 (30%), Gaps = 57/304 (18%)
Query: 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309
N + + S+ + SI SIAFS
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------EDSITSIAFSP 75
Query: 310 DGTYLATVGRDGYLRVFDYSKEQLICG--GKSYYGALLCCAWSM-DGKYILTGGEDD--L 364
DG L + DG ++++D + + + ++ A S DG IL
Sbjct: 76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135
Query: 365 VQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-------------- 409
V++W + K++ EGH+ V+ +AF S + + +
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195
Query: 410 -----------------RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT-FSTGSQ- 450
S D + LWDL +++ G + FS
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255
Query: 451 --SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH 506
S D + L+ S L H+ + + F+ + + + +G
Sbjct: 256 LASGSSDGTIRLWDLR--------SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307
Query: 507 IKIW 510
+++W
Sbjct: 308 VRLW 311
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327
+ G + S+AFS DG YLA+ DG ++++D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 3e-04
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327
+ G + S+AFS DG LA+ DG +RV+D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.003
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 342 GALLCCAWSMDGKYILTGGEDDLVQVWS 369
G + A+S DG + +G +D V+VW
Sbjct: 12 GPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.78 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.71 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.71 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.71 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.71 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.6 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.57 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.49 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.49 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.46 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.44 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.42 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.35 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.29 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.28 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.28 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.24 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.23 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.22 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.15 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.14 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.12 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.12 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.1 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.09 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.08 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.04 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.03 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.99 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.94 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.9 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.9 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.81 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.8 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.73 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.69 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.68 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.65 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.63 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.59 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.59 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.58 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.58 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.53 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.51 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.49 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.49 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.46 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.43 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.42 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.38 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.38 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.31 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.27 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.26 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.25 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.23 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.2 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.17 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.11 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.09 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.05 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.99 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.98 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.98 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.95 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.91 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.84 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.73 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.72 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.67 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.59 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.52 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.51 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.5 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.47 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.41 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.38 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.38 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.35 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.33 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.33 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.32 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.31 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.23 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.23 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.21 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.21 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.2 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.08 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.08 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.06 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.04 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.01 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.95 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.84 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.82 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.77 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.66 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.65 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.65 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.58 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.48 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.19 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.17 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.15 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.92 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.91 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.78 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.78 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.76 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.73 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.72 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.68 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.67 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.51 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.32 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.21 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.16 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.09 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.94 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.79 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.63 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.62 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.56 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.52 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.51 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.5 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.38 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 94.36 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.25 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.91 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.62 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.4 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.27 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.25 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.22 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.14 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.11 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.92 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.81 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.72 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.59 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.52 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.43 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.17 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.05 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.86 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.77 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 91.54 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.43 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.73 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.64 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.41 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.31 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.01 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.92 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.9 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.84 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.38 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.72 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.45 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.32 | |
| PRK10115 | 686 | protease 2; Provisional | 86.95 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.84 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.96 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.96 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 85.63 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 85.48 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.48 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.46 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.42 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.34 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.04 | |
| PLN02153 | 341 | epithiospecifier protein | 84.62 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 84.34 | |
| PLN02153 | 341 | epithiospecifier protein | 84.12 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.58 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 83.58 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.49 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 82.52 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 82.34 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 81.92 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 81.66 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 81.64 | |
| PRK10115 | 686 | protease 2; Provisional | 81.41 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 81.12 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.01 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 80.51 |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-57 Score=431.78 Aligned_cols=495 Identities=49% Similarity=0.827 Sum_probs=404.1
Q ss_pred CccCCCCCcccCCCC----CCCCCcCccceeecCcceEEEEEeecCCCCCcccccCeeeeEEEeccccCCCCCCCCCCCC
Q 008939 1 MINTANGMISQSSSS----ANAQSPGLKTYFKTPEGRYKLHYEKTYPSGLLHYAHGKTVTQATLAHLKEKPAPSTPTAPP 76 (548)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (548)
|++.+++|+++++++ ++||++++|++|+|||++|++++|++|+.+++||-+|+.+.++++|.++..|++.+++.+.
T Consensus 3 ~~~~s~~~~~~~~~~Ss~qsspqs~g~~l~~~tP~~~~~l~~~~t~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ts 82 (636)
T KOG2394|consen 3 MMNLSNGMISGPSSSSSSQSSPQSPGSKLYFKTPEGKYKLHYEKTHQSGLLHYPHGKTVTQVTLAQLGVHPGGATPAGTS 82 (636)
T ss_pred eecCCCccccCCccCcccccCCCCCcccccCCCcchheeeeeecccccccccccCCceeeeccccccCCCCCCCCCcccc
Confidence 788999998887744 6999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcccCCcchhhhhhhhccCCCCceeeecCCCCCCCcccCCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEE
Q 008939 77 SSFSASSGVVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFIS 156 (548)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vw 156 (548)
++...++| .++......+.+...+++++.+++++.+....+. .+....++..|++|+++.++.+++|
T Consensus 83 i~~~~s~g-~~s~~n~~~~s~~~~~~~~~~g~~~~~~s~~~sg------------~~~~~~~~~~gd~lcFnvg~~lyv~ 149 (636)
T KOG2394|consen 83 ISETGSSG-FRSALNHSSGSGPNNRALAPVGSNGAPHSNANSG------------IVTNTNQSGKGDRLCFNVGRELYVY 149 (636)
T ss_pred cccccccc-chhhccccccCCCCcceeccccCCCccccccccc------------ceeeccccCCCCEEEEecCCeEEEE
Confidence 88888899 7888999999999999999999998764443322 4456777889999999999999999
Q ss_pred EccC--CCCCCeEEEecCCCCceEEEecCC--CCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcc
Q 008939 157 DLNS--QDKDPIKSIHFSNSNPVCHAFDQD--AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSR 232 (548)
Q Consensus 157 d~~~--~~~~~i~~~~~~~~~~~~~~~~p~--~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (548)
+++. ...++|.+..|....++|++|+.. ..++..|++|...|+|++.|... .+ .. ..++.+..+.+..
T Consensus 150 ~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~--~~-~s-----klfne~r~i~kts 221 (636)
T KOG2394|consen 150 SYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN--FE-VS-----KLFNEERLINKSS 221 (636)
T ss_pred EccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh--hH-HH-----Hhhhhcccccccc
Confidence 9984 445789999999999999999654 34588899999999999998764 11 11 2255666678899
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCC-CCCCCCCcccccccceeeeecCCCCCC-CCeeEeeecCCCeEEEEECCC
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSK-DGAGDSSFPVIKDQTQFSVAHPRYSKS-NPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~ 310 (548)
|+|++|.|.++.+|+++..+|.+++||... .+.....++.+++...|.+...++... +|+..|...++.|+.++|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 999999999998999999999999999754 345556778888899999888777544 999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA 390 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~ 390 (548)
|++||+.+.||.+||||+.+.+++..++.+.+.++|++|||||++|++|++|..|.||.+..++.+++-++|.+||+.|+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va 381 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA 381 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC------------------------CCCCCccc-----------eeEEEEEEeCCCeEEEEECCCCeEEee--
Q 008939 391 FDSYWSQP------------------------NSDGTAET-----------VMYRFGSVGQDTRLLLWDLEMDEIVVP-- 433 (548)
Q Consensus 391 ~~p~~~~~------------------------~~dg~~~~-----------~~~~l~s~~~Dg~i~lwd~~~~~~~~~-- 433 (548)
|+||.... ++++..+. +.|+|.++++|.+++|||+....+...
T Consensus 382 FDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~~~p 461 (636)
T KOG2394|consen 382 FDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVPHPP 461 (636)
T ss_pred ecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcccCCc
Confidence 99873110 11222222 779999999999999999987766541
Q ss_pred ---eecCCCCCCcee-------------------cC----------------------------------------CCC-
Q 008939 434 ---LRRGPLGGSPTF-------------------ST----------------------------------------GSQ- 450 (548)
Q Consensus 434 ---~~~~~~~~~~~~-------------------~~----------------------------------------~~~- 450 (548)
++.++.....+. .+ ...
T Consensus 462 ~~~~R~~~n~~~pats~~a~s~a~gg~~~pg~~~~P~~~~r~~slp~s~i~~~ag~~~~~~~~~~~~s~~fs~lt~~~r~ 541 (636)
T KOG2394|consen 462 LYRLRRHPNNSSPATSPGAQSSAHGGEIGPGNTSVPGPCTRSASLPSSAISNRAGTPSVAGDGATASSSGFSFLTSACRK 541 (636)
T ss_pred hhhhhcCCCCCCCccCcccchhcccCcccCCCccCCCCcccCCCCccccccccCCCCCccccccccccccceeechhHhc
Confidence 111111000000 00 000
Q ss_pred ------ccccCCeeeeccc---------------------CCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEEC
Q 008939 451 ------SAHWDNVCPVGTL---------------------QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCR 503 (548)
Q Consensus 451 ------~~~~d~~~~~g~~---------------------~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~ 503 (548)
..+-...+..|.. ..+.++.|++..+|+.+.+.-.+.++.+.|..|+|+|+|.
T Consensus 542 ~~~~e~~hhs~Ghi~~~~s~~~k~~~~~~s~~dp~~~lgT~~cPri~~vpllepl~ckkiaherlTvl~F~edcivtacq 621 (636)
T KOG2394|consen 542 TRGNEKTHHSEGHISIWQSPNKKLNISTISSTDPAKTLGTPLCPRIRDVPLLEPLVCKKIAHERLTVLIFREDCIVTACQ 621 (636)
T ss_pred ccccccccccccccccccCCccccCCcccccCChhHhcCCccCCcccccccccccccchhchhheeeeeehhhhhhhhcc
Confidence 0000111111111 2245777778888888888777899999999999999999
Q ss_pred CCeEEEEeCCCCC
Q 008939 504 EGHIKIWMRPGVA 516 (548)
Q Consensus 504 Dg~I~iW~~~~~~ 516 (548)
||.|+-|-+++..
T Consensus 622 eg~ictw~rpg~~ 634 (636)
T KOG2394|consen 622 EGFICTWGRPGKA 634 (636)
T ss_pred cceEEecCCCCCC
Confidence 9999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=356.04 Aligned_cols=332 Identities=17% Similarity=0.283 Sum_probs=293.7
Q ss_pred CCCccc--ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE
Q 008939 117 GSSRIG--SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 117 ~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
...+++ +..+.||.++|.+++|+|+|..|+++++| ++|+||+.++. |+..+..|..-+.|++|+|+ +..|++
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPD---gk~iAS 174 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPD---GKKIAS 174 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCC---cchhhc
Confidence 333444 67888999999999999999999999999 99999999966 99999999999999999999 778999
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-----CCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-----GGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-----~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
|+.||+|++||..+ ++.+...+ ..|+..|++++|.| ... +|++++.||.|+|||+..
T Consensus 175 G~~dg~I~lwdpkt-----g~~~g~~l------~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~------ 236 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKT-----GQQIGRAL------RGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL------ 236 (480)
T ss_pred cccCCeEEEecCCC-----CCcccccc------cCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC------
Confidence 99999999999776 22222211 25999999999977 344 899999999999999975
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 348 (548)
...+..+.+|+.+|+|+.|--+| +|++++.|++|++|+...|.+...+++|..+|+.++
T Consensus 237 --------------------~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 237 --------------------GTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred --------------------ceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 35678889999999999997654 899999999999999999999999999999999998
Q ss_pred Ec-----------cC-------------------------CCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEE
Q 008939 349 WS-----------MD-------------------------GKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 349 ~s-----------pd-------------------------g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~ 391 (548)
++ |. ++.|++|++|.++.+|+-.. .+++.++.+|...|..+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 77 22 34599999999999999765 4588899999999999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
+| |+ ++|++++.|..|++||.++|+.+..++.+ ..+..++++.++ ..+..++.|..+++|
T Consensus 376 SP-------d~------r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs------RLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 376 SP-------DG------RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS------RLLVSGSKDSTLKVW 436 (480)
T ss_pred CC-------Cc------cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc------cEEEEcCCCceEEEE
Confidence 99 99 89999999999999999999999999854 677888888776 566788999999999
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
|+++.+....+.+|.+.|.++.|+||+ +++++.|..+++|.
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999995 99999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=331.28 Aligned_cols=331 Identities=18% Similarity=0.287 Sum_probs=277.3
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.-.++..|...|.|++|+|+ +..|++|+-|.++++||+.+. .++... +.|...|.|++|+||+.
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~---g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~-------KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT---GSRLVTGSGDTTVRLWDLDTE-----TPLFTC-------KGHKNWVLCVAWSPDGK 170 (480)
T ss_pred eeccccCCCCCcEEEEEecCC---CceEEecCCCceEEeeccCCC-----Ccceee-------cCCccEEEEEEECCCcc
Confidence 345567789999999999998 888999999999999999873 122111 24999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-----CCCEEEEEE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-----DGTYLATVG 318 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~~ 318 (548)
.|++|+.||.|++||..+++. ....+.+|...|++++|.| ..++||+++
T Consensus 171 -~iASG~~dg~I~lwdpktg~~-------------------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 171 -KIASGSKDGSIRLWDPKTGQQ-------------------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred -hhhccccCCeEEEecCCCCCc-------------------------ccccccCcccceeEEeecccccCCCccceeccc
Confidence 999999999999999887433 3455678889999999976 467999999
Q ss_pred CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCC---
Q 008939 319 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW--- 395 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~--- 395 (548)
.||.++|||+.-++++..+.+|..+|+|+.|--+| +|++|+.|++|++|+..+|.+...+++|..+|+.++.+-..
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 99999999999999999999999999999998776 89999999999999999999999999999999999887210
Q ss_pred --------CCCCCCCC------------ccceeEEEEEEeCCCeEEEEECCCCe-EEeeee-cCCCCCCceecCCCCccc
Q 008939 396 --------SQPNSDGT------------AETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLR-RGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 396 --------~~~~~dg~------------~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 453 (548)
..|++..+ ......+|++|+.|.++.+|+-...+ ++..+. +...++.+.|+|++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~---- 379 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG---- 379 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc----
Confidence 00110000 00001479999999999999976543 444443 33567889999997
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL-- 527 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~-- 527 (548)
..++.+++|..+++|+.++++.+..|++|.+.|+.++|+.| .|++++.|.+|++|++.+.+ ....+|...|+
T Consensus 380 --r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 380 --RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred --cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence 77889999999999999999999999999999999999998 59999999999999999887 45567999998
Q ss_pred EecCCCCceEeeecc
Q 008939 528 STSSKDKPLLSSKVV 542 (548)
Q Consensus 528 ~~s~d~~~l~s~~~~ 542 (548)
.++|||+.+++|+..
T Consensus 458 DwspDG~rV~sggkd 472 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKD 472 (480)
T ss_pred EecCCCceeecCCCc
Confidence 679999999999776
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=318.28 Aligned_cols=282 Identities=19% Similarity=0.240 Sum_probs=251.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++..+.|+.+++.|++++=+ .++||+..+. ..+..+..|...+.++.|+|.. ++..|++|+.||.|++|++++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence 35667789999999999998765 9999999985 4899999999999999999984 256899999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ..+. +...|..+|..++|+|+|+ +|++++.|.+-++||+++.
T Consensus 251 e-----~~l~-------~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk------------------------ 293 (459)
T KOG0272|consen 251 E-----TPLQ-------DLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETK------------------------ 293 (459)
T ss_pred C-----cchh-------hhhcchhhheeeeecCCCc-eeeecccccchhhcccccc------------------------
Confidence 2 1111 1224899999999999999 9999999999999999972
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
..+....+|...|.+++|.|||.++++|+.|..-||||+++++++..+.+|...|..++|+|+|..||+|+.|++++|
T Consensus 294 --~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 294 --SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred --hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 345556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
||++..+++..+.+|.+-|+.|+|.| +++ ++|+|++.|++++||.-++..++
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p-------~~g-----~fL~TasyD~t~kiWs~~~~~~~---------------- 423 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSP-------QEG-----YFLVTASYDNTVKIWSTRTWSPL---------------- 423 (459)
T ss_pred eeecccccceecccccchhhheEecc-------cCC-----eEEEEcccCcceeeecCCCcccc----------------
Confidence 99999999999999999999999998 432 89999999999999998776554
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
..+.||++.|.+++.++|+ |+|++.|.+||+|.
T Consensus 424 -------------------------------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 -------------------------------KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------------hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4556799999999999985 99999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=305.03 Aligned_cols=269 Identities=22% Similarity=0.358 Sum_probs=239.1
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC-CcEEEEEeC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG-DGAFVVGHA 251 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~-~~~l~s~~~ 251 (548)
..++..+.|+.+ +..|++|+.+|.+++|+..+ . .....+. .|...|.++.|+|.. ...|++|+.
T Consensus 175 ~rPis~~~fS~d---s~~laT~swsG~~kvW~~~~-----~-~~~~~l~------gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 175 TRPISGCSFSRD---SKHLATGSWSGLVKVWSVPQ-----C-NLLQTLR------GHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred CCcceeeEeecC---CCeEEEeecCCceeEeecCC-----c-ceeEEEe------ccccceeeEEEccCCCccceeeecc
Confidence 346777888888 78999999999999999876 2 2222222 599999999999983 448999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
||++++|+++. ..++..+.+|...|..++|+|+|++|++++.|.+-++||++++
T Consensus 240 Dgtvklw~~~~--------------------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 240 DGTVKLWKLSQ--------------------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCceeeeccCC--------------------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 99999999986 3678888999999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
+.+....+|...|.+|+|.|||.++++|+.|..-+|||+++++++..|.+|...|..|+|+| +| +.|
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-------NG------y~l 360 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-------NG------YHL 360 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-------Cc------eEE
Confidence 99888999999999999999999999999999999999999999999999999999999999 99 999
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
+||+.|++++|||++...++.. +.+|.+-|+.|
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~-----------------------------------------------ipAH~nlVS~V 393 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYT-----------------------------------------------IPAHSNLVSQV 393 (459)
T ss_pred eecCCCCcEEEeeeccccccee-----------------------------------------------cccccchhhhe
Confidence 9999999999999998765433 34699999999
Q ss_pred EEeCC---eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 492 IFTQE---SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 492 ~fspd---~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.|+|+ +|+|++.|++++||.-++-. ....+|...|+ .+++|+++|+++...
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 99994 49999999999999977755 45568999998 789999999998655
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=305.66 Aligned_cols=370 Identities=19% Similarity=0.251 Sum_probs=307.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|-..++++.|+.|.+++++++.| .++||+++..+.-....+..|.+.|...-|..+ ...|++-+.||.|.+|
T Consensus 140 ~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---SLDLYTVSKDGALFVW 216 (893)
T ss_pred eecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---cceEEEEecCceEEEE
Confidence 456788999999999999999999999 999999998554346677778999999899888 6679999999999999
Q ss_pred Eeeeccccc------------------ccc-e---e---eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 204 SLRQQLQDV------------------GKK-L---V---GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 204 dl~~~~~~~------------------~~~-~---~---~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
.......+. ++. . . ....|..+ ....|++.+|++... +|++|-..|...+|
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~---~~~kvtaa~fH~~t~-~lvvgFssG~f~Ly 292 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQ---NSSKVTAAAFHKGTN-LLVVGFSSGEFGLY 292 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecc---cccceeeeeccCCce-EEEEEecCCeeEEE
Confidence 887210000 011 0 0 00111111 237899999999888 99999999999999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-CeEEEEeCCCCeEEEee
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GYLRVFDYSKEQLICGG 337 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~v~vwd~~~~~~~~~~ 337 (548)
++.. .+.++.+...+.+|..++|+..|.+||.++.. |.+-||+..+...+...
T Consensus 293 elP~--------------------------f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ 346 (893)
T KOG0291|consen 293 ELPD--------------------------FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ 346 (893)
T ss_pred ecCC--------------------------ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec
Confidence 9875 46788888888999999999999999998754 89999999999999999
Q ss_pred eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 338 KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 338 ~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
++|...+.+++++|||+++|+|++|+.|+|||...+-|..+|..|++.|+.+.|+. .| +.+++.+.|
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-------~g------~~llssSLD 413 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-------RG------NVLLSSSLD 413 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------cC------CEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999998 88 799999999
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccC-CCCceeecCCCCceEEeecCCCCeeEEEEeCC
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ-PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~-~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd 496 (548)
|+|+.||+...+.-+++..+.+....+.+.+-. ...+..|..+ ..+.+|++++++.+..+.||++||.++.|+|+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~QfscvavD~s----GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS----GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEEcCC----CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999988766665555443310 1344555555 47899999999999999999999999999997
Q ss_pred e--EEEEECCCeEEEEeCCCC--CccccCCCCcEE--EecCCCCceEeeecccc
Q 008939 497 S--VLTVCREGHIKIWMRPGV--AESQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 497 ~--l~t~s~Dg~I~iW~~~~~--~~~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
+ |++++.|.+||+|++-.. ..+.......++ ++.|||+.||+++..|.
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 4 999999999999997655 444555555555 78899999999998854
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=273.59 Aligned_cols=289 Identities=15% Similarity=0.185 Sum_probs=255.1
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-...+|.+.|.++.|++|.++|++++.| .+.|||.-+.. .++.+.....-|...+|+|. ++.++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ceeEEecCceeEEEEEECCC---CCeEEecCcCceeEE
Confidence 4567899999999999999999999988 99999998854 88888888889999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++.....+...+ ..+....|.+.+.|+.|.+|+ .|++++.|.++.+||+++.
T Consensus 124 y~ls~~d~~g~~~------v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g------------------- 176 (343)
T KOG0286|consen 124 YPLSTRDAEGNVR------VSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETG------------------- 176 (343)
T ss_pred Eecccccccccce------eeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccc-------------------
Confidence 9998622121112 222334699999999999976 5999999999999999973
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
..+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+.+++.+.+|...|+++.|.|+|.-+++|++
T Consensus 177 -------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 177 -------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred -------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC
Confidence 45788999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
|++.++||++..+.+..+.. -...|++++|+- .| ++|.+|..|..+.+||.-.++.+.
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-------SG------RlLfagy~d~~c~vWDtlk~e~vg------- 309 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDSIICGITSVAFSK-------SG------RLLFAGYDDFTCNVWDTLKGERVG------- 309 (343)
T ss_pred CceeEEEeecCCcEEeeeccCcccCCceeEEEcc-------cc------cEEEeeecCCceeEeeccccceEE-------
Confidence 99999999999988888872 246899999998 88 899999999999999987766543
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.+.+|..+|++|..+||+ ++||+.|.+||||.
T Consensus 310 ----------------------------------------~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 310 ----------------------------------------VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------------------------EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 345799999999999996 89999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=262.01 Aligned_cols=292 Identities=16% Similarity=0.203 Sum_probs=246.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+.+|++.|+.++..+.. ...|+.++.|..|.+|++.......+.... ...+|...|..+..+++++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~--~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-------~~~GHsH~v~dv~~s~dg~- 76 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKN--SDILVSASRDKTIIVWKLTSDDIKYGVPVR-------RLTGHSHFVSDVVLSSDGN- 76 (315)
T ss_pred eeeeecCCCceEEEEEeecCC--CceEEEcccceEEEEEEeccCccccCceee-------eeeccceEecceEEccCCc-
Confidence 445678899999999998883 458999999999999999874333333222 2235899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++++++.|+.+++||+.. ..+.+.|.+|...|.+++|++|.+.+++|+.|.+|+
T Consensus 77 ~alS~swD~~lrlWDl~~--------------------------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLAT--------------------------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred eEEeccccceEEEEEecC--------------------------CcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 999999999999999987 356788999999999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeec--CCceEEEEEccC--CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSY--YGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~--~~~v~~l~~spd--g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+||...+ +..++..+ .+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.|+.++++|
T Consensus 131 lwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp------- 202 (315)
T KOG0279|consen 131 LWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP------- 202 (315)
T ss_pred eeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-------
Confidence 9999744 44444433 789999999998 67999999999999999999999999999999999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
|| .++++|+.||.+.+||++.++.+..+.....+.+++|+|.. ..........+++||+.....+..
T Consensus 203 DG------slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-------ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 203 DG------SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-------YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CC------CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc-------eeEeeccCCceEEEeccchhhhhh
Confidence 99 89999999999999999999999999998899999999885 222333455688888887777666
Q ss_pred eecC---------CCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 481 HRVH---------TEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 481 ~~~h---------~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+... .-...+++|++|+ |+.+-.|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6532 2234678899986 9999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=283.37 Aligned_cols=285 Identities=13% Similarity=0.229 Sum_probs=243.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..+|..+.|.|+|+.|++++.. .+.+|+...-. --..++.|.+.|.++.|+++ +..+++|..+|.|++|+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~---g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHN---GTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccC---CCEEEEcCCCceEEecccchh
Confidence 5678899999999999998877 99999986532 22234458899999999999 889999999999999997752
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
. .+ .. . ..|...|++++|+|++. .|++++.||+|+|||....
T Consensus 171 n---Vk-~~--~------ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~------------------------- 212 (464)
T KOG0284|consen 171 N---VK-II--Q------AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP------------------------- 212 (464)
T ss_pred h---hH-Hh--h------HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCC-------------------------
Confidence 1 11 11 1 12568999999999888 9999999999999998862
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
++-..+.+|.-.|.+++|+|...+|++++.|..|++||.++++++.++..|...|..+.|+|++++|++++.|..++++
T Consensus 213 -kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 213 -KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred -chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 3345568888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
|+++.+.+..+++|+..|+++.|+|. .. .+|.+++.||.|..|.+...+.+..+.
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~------~~------~lftsgg~Dgsvvh~~v~~~~p~~~i~------------- 346 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPL------NE------SLFTSGGSDGSVVHWVVGLEEPLGEIP------------- 346 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccc------cc------cceeeccCCCceEEEeccccccccCCC-------------
Confidence 99999999999999999999999993 22 589999999999999988444433322
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+|...|++|+|+|= .|++|+.|.++|+|......
T Consensus 347 ---------------------------------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 347 ---------------------------------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ---------------------------------cccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 268999999999995 48999999999999965443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=276.10 Aligned_cols=319 Identities=16% Similarity=0.231 Sum_probs=257.9
Q ss_pred CCCCCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCCCeE------------EEecCCCCceEEEecCCCCCCceEEE
Q 008939 128 SSSTSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKDPIK------------SIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~~i~------------~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
.|..+|++++|+|-.. +++++.++ ..++|++......... .-.+....+++++|+.+ |.+|++
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~---G~~Lat 252 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND---GTLLAT 252 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC---CCeEEE
Confidence 4999999999999877 78888888 9999998852211111 11123458999999998 889999
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
|+.+|.+++|+.... .+.... .|+++|.+++|+..|. +|++++.|+++.+||..++
T Consensus 253 G~~~G~~riw~~~G~------l~~tl~-------~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g---------- 308 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGN------LISTLG-------QHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTG---------- 308 (524)
T ss_pred eecCcEEEEEecCch------hhhhhh-------ccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCc----------
Confidence 999999999998752 221111 2899999999999999 9999999999999998762
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
...+.+..|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|.|.|
T Consensus 309 ----------------~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 309 ----------------TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred ----------------eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC
Confidence 234455556666567888654 468999999999999999889999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCC---CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW---SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~---~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.+|++++.|++++||++........+++|...|..+.|+|.- +.|+ ++ ..+++++.|+.|++||+..+.+
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~-~~------~~l~sas~dstV~lwdv~~gv~ 444 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPN-MN------LMLASASFDSTVKLWDVESGVP 444 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCc-CC------ceEEEeecCCeEEEEEccCCce
Confidence 999999999999999999999999999999999999999931 1111 12 5899999999999999998876
Q ss_pred EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEE
Q 008939 431 VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIK 508 (548)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~ 508 (548)
+.. |..|+++|++|+|+|+ ++++|+.||.|.
T Consensus 445 i~~-----------------------------------------------f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 445 IHT-----------------------------------------------LMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred eEe-----------------------------------------------eccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 654 4459999999999998 499999999999
Q ss_pred EEeCCCCCccccC-CCCcEE--EecCCCCceEeeecccc
Q 008939 509 IWMRPGVAESQSS-SSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 509 iW~~~~~~~~~~~-~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
||+.+.++.-... ....|. .|+.+|..|+.+-..|+
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCC
Confidence 9999988754443 333344 78888888776655444
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=263.47 Aligned_cols=330 Identities=13% Similarity=0.136 Sum_probs=283.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
-+.|..|..++++++.+|+.++++++++| .-+||++.++. .+..+..|++.|+|+.|+.+ +.+|++|..+|.|.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshd---gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHD---GTLLATGDMSGKVL 131 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccC---ceEEEecCCCccEE
Confidence 45788999999999999999999998887 88999999976 88899999999999999999 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||+..+. .....+. .....+.-+.|+|.+. +|++|+.||.+.+|.+.+.
T Consensus 132 v~~~stg------~~~~~~~------~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~------------------ 180 (399)
T KOG0296|consen 132 VFKVSTG------GEQWKLD------QEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ------------------ 180 (399)
T ss_pred EEEcccC------ceEEEee------cccCceEEEEeccccc-EEEeecCCCcEEEEECCCc------------------
Confidence 9998862 1111111 1356778899999888 9999999999999999862
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs 360 (548)
...+.+.+|+.++++=.|.|+|+.++++..||+|++||+.++++++.+... .....++.++..+..++.|+
T Consensus 181 --------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 181 --------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred --------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 456788899999999999999999999999999999999999998877633 34678899999999999999
Q ss_pred CCCeEEEEECCCceeEEecc--------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 361 EDDLVQVWSMEDRKVVAWGE--------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~--------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.++.+++.+..+++.+.... .++..+.+|.|.| -. ....++++|+.||+|.|||+.....+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~-------~s---s~lpL~A~G~vdG~i~iyD~a~~~~R~ 322 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP-------SS---SKLPLAACGSVDGTIAIYDLAASTLRH 322 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc-------cc---cccchhhcccccceEEEEecccchhhe
Confidence 99999999999998887766 4677788888877 22 122578999999999999999998888
Q ss_pred eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEE
Q 008939 433 PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIW 510 (548)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW 510 (548)
..+++..+..+.|.. +.++.++..++.++.||.++++.+..+.+|..+|.+++.+|+ .++|+|.|++.+|+
T Consensus 323 ~c~he~~V~~l~w~~-------t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 323 ICEHEDGVTKLKWLN-------TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred eccCCCceEEEEEcC-------cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 888876666666543 245678889999999999999999999999999999999997 59999999999999
Q ss_pred eCC
Q 008939 511 MRP 513 (548)
Q Consensus 511 ~~~ 513 (548)
+.+
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 876
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=267.23 Aligned_cols=287 Identities=21% Similarity=0.305 Sum_probs=256.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.....+|..+|+.+-|.|+-.++++++.| +|++||+.+++ ....++.|.+.+..++|+.. |.+|++++.|=.+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~---Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE--LERSLRGHTDSVFDISFDAS---GKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh--hhhhhhccccceeEEEEecC---ccEEEecCCccchh
Confidence 45666799999999999999999999888 99999999966 78899999999999999988 78999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||..+.. +..+.. ..|...|.+++|-|.+. .+++++.|.+|+.|++.++
T Consensus 176 LWd~~~~~-~c~ks~----------~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg------------------ 225 (406)
T KOG0295|consen 176 LWDFDTFF-RCIKSL----------IGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTG------------------ 225 (406)
T ss_pred heeHHHHH-HHHHHh----------cCcccceeeEEEEecCC-eeeecccccceeEEecccc------------------
Confidence 99988631 111111 13788999999999998 9999999999999999972
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC---------
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD--------- 352 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd--------- 352 (548)
-.+..+.+|...|.-++.+.||.++++++.|.+|++|-+.++++...++.|.-+|.|++|-|.
T Consensus 226 --------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 226 --------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred --------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 457778888899999999999999999999999999999999998899999999999999873
Q ss_pred ------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 353 ------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 353 ------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
++++.+++.|++|++||+.++.++.++.+|..+|..++|+| .| ++|+++..|++|++||++
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-------~G------kyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-------GG------KYILSCADDKTLRVWDLK 364 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-------CC------eEEEEEecCCcEEEEEec
Confidence 35899999999999999999999999999999999999999 89 899999999999999999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECC
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCRE 504 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~D 504 (548)
+.+|+..++ .|..-|++++|+.+ +++||+-|
T Consensus 365 ~~~cmk~~~-----------------------------------------------ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 365 NLQCMKTLE-----------------------------------------------AHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred cceeeeccC-----------------------------------------------CCcceeEEEecCCCCceEEecccc
Confidence 999886554 37888999999886 69999999
Q ss_pred CeEEEEeC
Q 008939 505 GHIKIWMR 512 (548)
Q Consensus 505 g~I~iW~~ 512 (548)
.++++|..
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=268.59 Aligned_cols=367 Identities=14% Similarity=0.176 Sum_probs=276.0
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---- 197 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---- 197 (548)
......|..+++.+.|+|.|.+++++-.. +|||||......-.-..++.-...+..++|+.+ +.+|++.+..
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d---s~RI~avGEGrerf 128 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD---SKRIAAVGEGRERF 128 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC---CcEEEEEecCccce
Confidence 34566789999999999999999887655 999999876331222333334568999999999 5566666544
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.+.+||-.+.. + +..+|...|++++|-|..+..+++|++|+.|.+|+=.-
T Consensus 129 g~~F~~DSG~Sv---G-----------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--------------- 179 (603)
T KOG0318|consen 129 GHVFLWDSGNSV---G-----------EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--------------- 179 (603)
T ss_pred eEEEEecCCCcc---c-----------eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---------------
Confidence 458888866521 1 11258999999999999998999999999999997321
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg~ 354 (548)
.+.-..++.|..-|+|+.|+|||.++++++.||.+.+||=.+++.+..+. +|.+.|.+++|+||++
T Consensus 180 -----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 180 -----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST 248 (603)
T ss_pred -----------eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc
Confidence 12223456678899999999999999999999999999999999998887 8999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEec-------------------------------------------cCCCCCeEEEEE
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWG-------------------------------------------EGHNSWVSGVAF 391 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~-------------------------------------------~~h~~~V~~v~~ 391 (548)
.+++++.|.+++|||+.+.+++.++ .||...|+++..
T Consensus 249 ~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 249 QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV 328 (603)
T ss_pred eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE
Confidence 9999999999999999876544433 589999999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee-----------ecC-----------------------
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL-----------RRG----------------------- 437 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~-----------~~~----------------------- 437 (548)
+| |+ .+|.+++.||.|.-||..++..-+.. ...
T Consensus 329 ~~-------d~------~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 329 SP-------DG------KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cC-------CC------CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 99 88 79999999999999998766542111 000
Q ss_pred ----------CCCCCceecCCCC-------------------------------ccc-cCCeeeecccCCCCceeecCCC
Q 008939 438 ----------PLGGSPTFSTGSQ-------------------------------SAH-WDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 438 ----------~~~~~~~~~~~~~-------------------------------~~~-~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
.+...++...++. ... -...+.+|..|..++++.+...
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 0000111111110 001 1233467777888888887654
Q ss_pred C--ceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc---CCCCcEE--EecCCCCceEeeeccccc
Q 008939 476 S--PLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---SSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 476 ~--~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
. +...+..|..+|++|+|+||+ |+++...+.+.+||+...+.... -|...|. +++|+.+++|+|...-++
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 3 444566799999999999984 88888889999999887765322 2666666 888999999999776443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=282.57 Aligned_cols=382 Identities=18% Similarity=0.190 Sum_probs=298.6
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|..++..++|+|.|..+++++.| .++|||+..+. .++.++.+++-+..+.|.|+.. ...|++|..|+.|++||++
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~--~th~fkG~gGvVssl~F~~~~~-~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY--CTHSFKGHGGVVSSLLFHPHWN-RWLLASGATDGTVRVWNLN 179 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE--EEEEecCCCceEEEEEeCCccc-hhheeecCCCceEEEEEcc
Confidence 489999999999999999998877 99999999865 9999999999999999999854 3678999999999999998
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc---------
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT--------- 277 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--------- 277 (548)
.. +.+.... ..|.+.|++++|.+++. .+++++.|..+.|||+.+ .+.....+.....+
T Consensus 180 ~~-----~tcl~~~------~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 180 DK-----RTCLHTM------ILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred cC-----chHHHHH------HhhhhheeeeeeccCCc-eEEEeccCcEEEEeehhh-hhhhheechhhheeeEEEechhc
Confidence 62 2211111 13899999999999988 899999999999999954 22222222111000
Q ss_pred -----eeeeecC---------C----------C-------------------------------CCCCCeeEeeecCCCe
Q 008939 278 -----QFSVAHP---------R----------Y-------------------------------SKSNPIARWHICQGSI 302 (548)
Q Consensus 278 -----~~~~~~~---------~----------~-------------------------------~~~~~~~~~~~h~~~v 302 (548)
.+..... . . ....++..+-+..+.|
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence 0000000 0 0 0011111222345788
Q ss_pred EEEEEC-CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce----eEE
Q 008939 303 NSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK----VVA 377 (548)
Q Consensus 303 ~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~----~~~ 377 (548)
.+|+|- |+.++|+++++.+.+|+|++.+..+. .+.+|...|.+++...+|-+|++|+.|..+++|.++++. +++
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 889875 57789999999999999999887766 789999999999976788899999999999999885542 556
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe----------eeecCCCCCCceecC
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV----------PLRRGPLGGSPTFST 447 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~----------~~~~~~~~~~~~~~~ 447 (548)
...+|...|.+|+++. .+. ..|++++.|++|++|++...+... ...++..++++.+++
T Consensus 406 ~~~gH~~svgava~~~-------~~a-----sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSK-------LGA-----SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred hhcccccccceeeecc-------cCc-----cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 6779999999999975 442 589999999999999998722111 111335677777776
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSS 523 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~ 523 (548)
+ |..+++|+.|...++|+++....+.++.+|...|.+|.|+|. .++|+|.|++|+||.+.+... ...+|.
T Consensus 474 n------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 474 N------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred C------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 6 578899999999999999999999999999999999999995 699999999999999998774 344788
Q ss_pred CcEE--EecCCCCceEeeecccc
Q 008939 524 ETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 524 ~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
..|+ +|-.+|+.|+|+...|-
T Consensus 548 ~aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCc
Confidence 9998 77799999999987764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=247.39 Aligned_cols=252 Identities=23% Similarity=0.371 Sum_probs=218.1
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
...|..+...|+++.|++++...||+||+++....|+.++..+..+|+.+.|..+ |+.+++|+.||.++|||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---grWMyTgseDgt~kIWdlR~~- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---GRWMYTGSEDGTVKIWDLRSL- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeec---CeEEEecCCCceEEEEeccCc-
Confidence 5678899999999999999999999999999887799999999999999999998 899999999999999999972
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
.-.+.. -+..+|+++..+|+.. .|++|..+|.|++||+..+.......+.
T Consensus 116 -~~qR~~-----------~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe----------------- 165 (311)
T KOG0315|consen 116 -SCQRNY-----------QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPE----------------- 165 (311)
T ss_pred -ccchhc-----------cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCC-----------------
Confidence 111111 1679999999999988 8999999999999999864222211111
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC------eEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE------QLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+|.++...|||++|+.+...|.+.+|++-.. +++..++.|.+.++.+.+|||+++||+++.|.
T Consensus 166 --------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 166 --------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred --------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 1267899999999999999999999999999654 35667889999999999999999999999999
Q ss_pred eEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 LVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+++||+.++. +....+++|..+|+..+|+. || .+|++++.|+.+++||+..++.++....
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-------dg------~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-------DG------EYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeecc-------Cc------cEEEecCCCCceeecccccCceeeecCC
Confidence 9999999987 66677889999999999999 99 8999999999999999999987766544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=290.27 Aligned_cols=254 Identities=20% Similarity=0.286 Sum_probs=226.9
Q ss_pred cccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC-----------------------------CCCeEEEec
Q 008939 122 GSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD-----------------------------KDPIKSIHF 171 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~-----------------------------~~~i~~~~~ 171 (548)
--..+.+....++|+.|++|+..+|.+..| .|++|.+.... ......+..
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 356777778899999999999999999988 99999987311 112345677
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
|...|..+.|+|+ .++|++++.|+.|++|++++. .-++. ..+|..+|+++.|+|.|- +||+++.
T Consensus 450 H~GPVyg~sFsPd---~rfLlScSED~svRLWsl~t~-----s~~V~-------y~GH~~PVwdV~F~P~Gy-YFatas~ 513 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD---RRFLLSCSEDSSVRLWSLDTW-----SCLVI-------YKGHLAPVWDVQFAPRGY-YFATASH 513 (707)
T ss_pred CCCceeeeeeccc---ccceeeccCCcceeeeecccc-----eeEEE-------ecCCCcceeeEEecCCce-EEEecCC
Confidence 8899999999999 889999999999999999872 11221 125899999999999998 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|++.++|..+. ..|.+.+.+|...|.|+.|+|+..|+++|+.|.+||+||+.+|
T Consensus 514 D~tArLWs~d~--------------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 514 DQTARLWSTDH--------------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred Cceeeeeeccc--------------------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC
Confidence 99999999876 4678889999999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
..+..+.+|.++|.+++|||+|++|++|++|+.|.+||+.+++.+..+.+|.+.|.+|.|+. || ..|
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-------dg------~vL 634 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-------DG------NVL 634 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-------CC------CEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 99 799
Q ss_pred EEEeCCCeEEEEECCCCeE
Q 008939 412 GSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~ 430 (548)
++++.|.+|++||+.....
T Consensus 635 asgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EecCCCCeEEEEEchhhcc
Confidence 9999999999999876543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=251.50 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=240.7
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
..+.++.|...|.++.|+++ .++|++++.||.+.|||.-+. .+..... .....|..++|+|.++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~D---sr~ivSaSqDGklIvWDs~Tt-----nK~haip-------l~s~WVMtCA~sPSg~- 110 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTD---SRRIVSASQDGKLIVWDSFTT-----NKVHAIP-------LPSSWVMTCAYSPSGN- 110 (343)
T ss_pred eEEEecccccceeeeEecCC---cCeEEeeccCCeEEEEEcccc-----cceeEEe-------cCceeEEEEEECCCCC-
Confidence 34678889999999999999 778999999999999998762 2222111 2478899999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++++|+-|+...||++....... .....+.+.+|++-+.|+.|-+|+ .|++++.|.++.
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g--------------------~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCa 169 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEG--------------------NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCA 169 (343)
T ss_pred eEEecCcCceeEEEecccccccc--------------------cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEE
Confidence 99999999999999998521100 013345678899999999998864 689999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+||+++++.+..+.+|.+.|.+++++| +++.+++|+-|...+|||++.+.+++.|.+|++-|++|.|.| +|
T Consensus 170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-------~G- 241 (343)
T KOG0286|consen 170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-------SG- 241 (343)
T ss_pred EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-------CC-
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999 99
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.-|++|+.|+..++||++.++.+..+.. ..
T Consensus 242 -----~afatGSDD~tcRlyDlRaD~~~a~ys~---------------------------------------------~~ 271 (343)
T KOG0286|consen 242 -----DAFATGSDDATCRLYDLRADQELAVYSH---------------------------------------------DS 271 (343)
T ss_pred -----CeeeecCCCceeEEEeecCCcEEeeecc---------------------------------------------Cc
Confidence 7899999999999999999988876654 11
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
-..+|++++|+-.+ |++|..|..+.+||.-.++ ..+.+|+..|. .++|||--|++|...
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 24679999999964 8888999999999955444 45568888887 778999999998654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=268.22 Aligned_cols=278 Identities=17% Similarity=0.299 Sum_probs=246.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
....|++++|+.+|..|+++..+ .++||+... ..+.++..|...|..+.|+.. |.+|++++.|+++.+||..+
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccC
Confidence 45789999999999999999988 999999884 478889999999999999998 89999999999999999865
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ...+... .|..+-.+|.|..+.. |++++.|+.|+|+.+..
T Consensus 308 g------~~~q~f~------~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~------------------------- 348 (524)
T KOG0273|consen 308 G------TVKQQFE------FHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGE------------------------- 348 (524)
T ss_pred c------eEEEeee------eccCCccceEEecCce--EeecCCCceEEEEEecC-------------------------
Confidence 2 1111111 2566668899988775 99999999999999975
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC---------EEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK---------YILT 358 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~---------~l~s 358 (548)
..|+..+.+|.+.|.++.|+|.+.+|++++.|++++||+.........+++|...|..+.|+|.|. .|++
T Consensus 349 -~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 349 -DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred -CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 578999999999999999999999999999999999999988888999999999999999999764 6899
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
++.|.+|++||+..+.+++.|..|..+|++|+|+| +| +++++|+.||.|.+|+++++++.+....
T Consensus 428 as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-------~g------~ylAsGs~dg~V~iws~~~~~l~~s~~~-- 492 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-------NG------RYLASGSLDGCVHIWSTKTGKLVKSYQG-- 492 (524)
T ss_pred eecCCeEEEEEccCCceeEeeccCCCceEEEEecC-------CC------cEEEecCCCCeeEeccccchheeEeecC--
Confidence 99999999999999999999999999999999999 99 8999999999999999999998876654
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
.+.|..|.|+-+ .|..+-.|+.+++-|+.
T Consensus 493 ----------------------------------------------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 ----------------------------------------------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------------------------------------------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 456899999986 47788899999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=291.65 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=220.3
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc----cc--cccce--------eeeee-----eccCCcccCcc
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL----QD--VGKKL--------VGAHH-----YNKDGSVNNSR 232 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~----~~--~~~~~--------~~~~~-----~~~~~~~~~~~ 232 (548)
....++|..|+++ +.+|+.|..|-.|++|.+.... ++ ...++ ..... ..+...+|.++
T Consensus 377 t~~~v~ca~fSdd---ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 377 TYQGVTCAEFSDD---SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred cCCcceeEeecCC---cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 4568899999999 7799999999999999998411 00 00000 00000 00112359999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
|+.+.|+|+.+ +|+++++|+++++|.+++ ...+..+++|..+|.++.|+|-|-
T Consensus 454 Vyg~sFsPd~r-fLlScSED~svRLWsl~t--------------------------~s~~V~y~GH~~PVwdV~F~P~Gy 506 (707)
T KOG0263|consen 454 VYGCSFSPDRR-FLLSCSEDSSVRLWSLDT--------------------------WSCLVIYKGHLAPVWDVQFAPRGY 506 (707)
T ss_pred eeeeeeccccc-ceeeccCCcceeeeeccc--------------------------ceeEEEecCCCcceeeEEecCCce
Confidence 99999999999 999999999999999997 345677889999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 313 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
|+|+++.|++.++|.....+.+..+.+|.+.|.|+.|+|+..++++|+.|.+|++||+.++..+..|.||.++|.+|+|+
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| +| ++|++|+.|+.|++||+..+..+.
T Consensus 587 p-------~G------r~LaSg~ed~~I~iWDl~~~~~v~---------------------------------------- 613 (707)
T KOG0263|consen 587 P-------CG------RYLASGDEDGLIKIWDLANGSLVK---------------------------------------- 613 (707)
T ss_pred C-------CC------ceEeecccCCcEEEEEcCCCcchh----------------------------------------
Confidence 9 99 899999999999999999887654
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+|++.|.+|.|+.|+ |++++.|.+|++||+....
T Consensus 614 -------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 614 -------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 345689999999999986 9999999999999976543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=248.09 Aligned_cols=285 Identities=18% Similarity=0.212 Sum_probs=228.4
Q ss_pred ccCCCCCCceeEEeCCCCCE-EEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGKGTY-IIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~-l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
...+|...|+.++..+.+.- +..++.| .+.+|++...+. .+++.+..|...+..++.+++ +++.++++.|+.
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d---g~~alS~swD~~ 86 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD---GNFALSASWDGT 86 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC---CceEEeccccce
Confidence 34578999999999887554 4445666 999999986543 468889999999999999999 999999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+++||+.+ ++...... +|...|.+++|+++.. .+++|+.|.+|++|++-.+..
T Consensus 87 lrlWDl~~-----g~~t~~f~-------GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-------------- 139 (315)
T KOG0279|consen 87 LRLWDLAT-----GESTRRFV-------GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-------------- 139 (315)
T ss_pred EEEEEecC-----CcEEEEEE-------ecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE--------------
Confidence 99999987 22222211 4899999999999999 999999999999999864210
Q ss_pred eeecCCCCCCCCeeEee-ecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 280 SVAHPRYSKSNPIARWH-ICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
...-. .|.+.|.|+.|+|+ ..+|++++.|++|++||+++.++...+.+|.+.++.+++||||.++
T Consensus 140 ------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 140 ------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred ------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 11111 12478999999997 6799999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++|+.||.+.+||++.++.+..+. |...|.+++|+| +. +.| ....+..|+|||+.++.++..+..
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-------nr------ywL-~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-------NR------YWL-CAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-------Cc------eeE-eeccCCceEEEeccchhhhhhccc
Confidence 999999999999999999988887 899999999999 65 444 445566799999999999888765
Q ss_pred CCCC----------CCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 437 GPLG----------GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 437 ~~~~----------~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
+... .+++++.++ ..+..|..++.+++|.+
T Consensus 273 d~~g~s~~~~~~~clslaws~dG------~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADG------QTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccccccCCcEEEEEEEcCCC------cEEEeeecCCcEEEEEe
Confidence 4222 223444444 34455556666666654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=257.30 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=254.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.++|.+=|.+++++|.+.++++++.| ++.|||+.++. ...++..|...+..+++++- ..+|++++.|++|+.||
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEe
Confidence 45899999999999999999999998 99999999966 77888889999999999998 66899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
|+. .+++ ++..+|-..|+|++.+|.-+ +|++|+.|..++|||+++
T Consensus 222 Le~------nkvI------R~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt---------------------- 266 (460)
T KOG0285|consen 222 LEY------NKVI------RHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT---------------------- 266 (460)
T ss_pred chh------hhhH------HHhccccceeEEEeccccce-eEEecCCcceEEEeeecc----------------------
Confidence 987 2332 23346899999999999998 999999999999999997
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++....+..|...+.+++.+|....+|+++.| .
T Consensus 267 ----r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 267 ----RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ----cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence 46789999999999999999966789999999999999999999999999999999999999999888888876 7
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|+-|++..+..++.+.+|+..|.+++... || ++++|+..|.|.+||.+++...+..+.-..
T Consensus 342 ik~w~~p~g~f~~nlsgh~~iintl~~ns-------D~-------v~~~G~dng~~~fwdwksg~nyQ~~~t~vq----- 402 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNAIINTLSVNS-------DG-------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ----- 402 (460)
T ss_pred ceeccCCccchhhccccccceeeeeeecc-------Cc-------eEEEcCCceEEEEEecCcCccccccccccc-----
Confidence 99999999999999999999999999987 88 899999999999999999877655433111
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
-|++ ..+..|++.+|... .|+||..|.+|++|.-..
T Consensus 403 ---------------pGSl-------------------~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 403 ---------------PGSL-------------------ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ---------------CCcc-------------------ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 1111 12567999999886 499999999999998544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=240.71 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=225.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
-+|++++.| +||+|...++. ...++......+..+...|+ +.+|++++. -.|++||+++..+.+ +.. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~--C~rTiqh~dsqVNrLeiTpd---k~~LAaa~~-qhvRlyD~~S~np~P---v~t-~- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI--CSRTIQHPDSQVNRLEITPD---KKDLAAAGN-QHVRLYDLNSNNPNP---VAT-F- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCe--EEEEEecCccceeeEEEcCC---cchhhhccC-CeeEEEEccCCCCCc---eeE-E-
Confidence 467777878 99999999966 99999999999999999999 556776654 589999999842221 211 1
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
..|...|+.+.|..+|+ .+++|++||+++|||++... .++.-.|..+
T Consensus 80 -----e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~---------------------------~qR~~~~~sp 126 (311)
T KOG0315|consen 80 -----EGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLS---------------------------CQRNYQHNSP 126 (311)
T ss_pred -----eccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcc---------------------------cchhccCCCC
Confidence 14889999999999999 99999999999999999621 1222334589
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc------e
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------K 374 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~------~ 374 (548)
|+++..+|+...|+++..+|.|+|||+.+..+.+.+. ...-.|.++...|||..|+.+...|..++|++-.. +
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 9999999999999999999999999999876655543 34467999999999999999999999999999654 4
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcccc
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW 454 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (548)
++..++.|+..+....++| |+ ++|++++.|.+++||+.+.- ...
T Consensus 207 P~~k~~ah~~~il~C~lSP-------d~------k~lat~ssdktv~iwn~~~~-~kl---------------------- 250 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSP-------DV------KYLATCSSDKTVKIWNTDDF-FKL---------------------- 250 (311)
T ss_pred EhhheecccceEEEEEECC-------CC------cEEEeecCCceEEEEecCCc-eee----------------------
Confidence 6778889999999999999 99 89999999999999998865 211
Q ss_pred CCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc
Q 008939 455 DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE 517 (548)
Q Consensus 455 d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~ 517 (548)
-..+++|+..+.+.+|+-| +|+||+.|+.+|+|+++.+++
T Consensus 251 -----------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 251 -----------------------ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred -----------------------EEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 1234678999999999998 599999999999999988763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=272.62 Aligned_cols=324 Identities=19% Similarity=0.297 Sum_probs=272.8
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~ 207 (548)
...+++++|++.-..|+++-.. ...+|++.. ...|+.+......+..++|+.. |..|+.|+.. |++.+|+...
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~--f~lih~LSis~~~I~t~~~N~t---GDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD--FNLIHSLSISDQKILTVSFNST---GDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCC--ceEEEEeecccceeeEEEeccc---CCEEEEcCCccceEEEEEeec
Confidence 4788999999999999998777 788999998 5599999999999999999998 8899999876 9999999876
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ..+. ....|...+++++++|||+ ++++|+.||.|+|||...
T Consensus 340 E------sYVl------KQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S------------------------- 381 (893)
T KOG0291|consen 340 E------SYVL------KQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS------------------------- 381 (893)
T ss_pred c------ceee------eccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC-------------------------
Confidence 1 1111 1124899999999999999 999999999999999986
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCC-eE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDD-LV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg-~I 365 (548)
.-.+..+..|+..|+.+.|+..++.|++.+.||+||.||+...+.-.++.... -...|++..|.|.++++|+.|. .|
T Consensus 382 -gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 382 -GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred -ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 34578889999999999999999999999999999999999888887776533 3578899999999999999886 69
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-eEEeeeecCCCCCCce
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~ 444 (548)
.||++++|+.+..+.||+++|.+++|+| +| ..|++++.|.+|++||+-.. ..+.+++..+....+.
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~-------~~------~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs 527 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSP-------DG------SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS 527 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEcc-------cc------CeEEeccccceEEEEEeeccCceeeeEeeccceeEEE
Confidence 9999999999999999999999999999 88 79999999999999998654 4556677767888899
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEee--------------------cCCCCeeEEEEeCCe--EEEEE
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR--------------------VHTEPLSGLIFTQES--VLTVC 502 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~--------------------~h~~~V~~l~fspd~--l~t~s 502 (548)
|.|++ ..+.+.++++.+.+||......+.... ......+.|++++|+ |++|+
T Consensus 528 frPdG------~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 528 FRPDG------KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred EcCCC------CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 99998 556677777777777765544332222 123578999999985 99999
Q ss_pred CCCeEEEEeCCCCC
Q 008939 503 REGHIKIWMRPGVA 516 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~ 516 (548)
....|||++++.+.
T Consensus 602 ~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 602 ESNSICIYDVPEGV 615 (893)
T ss_pred CcccEEEEECchhh
Confidence 99999999987753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=262.49 Aligned_cols=282 Identities=23% Similarity=0.392 Sum_probs=240.9
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|..++.+++|+|+++++++++.+ .+++|++.... .+..+..+...+.++.|.|+ +..|++++.+|.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD---GTYLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC---CCEEEEEcCCCeEEEEE
Confidence 34788999999999999999998866 99999999744 77777778778889999998 67899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... +.+.... .|...+.++.|+|++. ++++++.|+.|++||++.
T Consensus 80 ~~~~-----~~~~~~~-------~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~---------------------- 124 (289)
T cd00200 80 LETG-----ECVRTLT-------GHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVET---------------------- 124 (289)
T ss_pred cCcc-----cceEEEe-------ccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCC----------------------
Confidence 9862 1221111 2677899999999977 888888899999999984
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..++..+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.
T Consensus 125 ----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 125 ----GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred ----cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 2334555677789999999999999998888999999999989888888889889999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|++||+++++.+..+..|...|.++.|+| ++ .++++++.|+.|++||+.+++.+..+
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------~~~~~~~~~~~i~i~~~~~~~~~~~~---------- 257 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSP-------DG------YLLASGSEDGTIRVWDLRTGECVQTL---------- 257 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcC-------CC------cEEEEEcCCCcEEEEEcCCceeEEEc----------
Confidence 99999999999998888999999999999 77 68888888999999999876654432
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..|...|.++.|+|+ .|++++.||.|++|+
T Consensus 258 -------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 -------------------------------------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------------------------------------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 247788999999996 599999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=265.53 Aligned_cols=283 Identities=18% Similarity=0.279 Sum_probs=236.6
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...|+|+.|+. ..++++..| +|+|||.++ ...+..+..|.+.+.|+.|+. ..|++|++|.+|++||+.+
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~-----rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDE-----RVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccc-----eEEEecCCCceEEEEeccC-
Confidence 56788888864 567888877 999999998 458889999999999999974 4899999999999999987
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
++.+...++ |...|..+.|+.. ++++++.|.++.|||+.... .
T Consensus 267 ----ge~l~tlih-------HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-----------------------~ 309 (499)
T KOG0281|consen 267 ----GEPLNTLIH-------HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-----------------------D 309 (499)
T ss_pred ----CchhhHHhh-------hcceeEEEEEeCC---EEEEecCCceeEEEeccCch-----------------------H
Confidence 333333333 8899999999743 89999999999999998622 1
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
....+.+.+|..+|+.+.|+ .+++++++.|.+|++|++.+++.+.++.+|...|-|+.+ .++++++|+.|.+|++|
T Consensus 310 it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence 22345677888999999995 469999999999999999999999999999999999887 58899999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
|++.|.++..++||+.-|.++.|+. ..|++|+.||+|++||+..+...+... .
T Consensus 386 di~~G~cLRvLeGHEeLvRciRFd~---------------krIVSGaYDGkikvWdl~aaldpra~~-----~------- 438 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEELVRCIRFDN---------------KRIVSGAYDGKIKVWDLQAALDPRAPA-----S------- 438 (499)
T ss_pred eccccHHHHHHhchHHhhhheeecC---------------ceeeeccccceEEEEecccccCCcccc-----c-------
Confidence 9999999999999999999999953 689999999999999998765322111 0
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.-++..+..|.+.|..+.|..-.|++++.|.+|.|||+..+.
T Consensus 439 --------------------------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 439 --------------------------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred --------------------------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 012334456899999999998889999999999999976543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=267.52 Aligned_cols=266 Identities=17% Similarity=0.264 Sum_probs=229.1
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..|..+.|.|+ |+.|++|+..|.+.+|+.... .|..-...|..+|+++.|++++. .+++|+.+|
T Consensus 97 c~V~~v~WtPe---GRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG 160 (464)
T KOG0284|consen 97 CPVNVVRWTPE---GRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDSPVRTMKWSHNGT-WMISGDKGG 160 (464)
T ss_pred cceeeEEEcCC---CceeEeecccccEEEecCcee------------eHHHHhhhhcccceeEEEccCCC-EEEEcCCCc
Confidence 46788899998 889999999999999987441 11111124899999999999999 999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
.|++|+... +-++.++.|. ..|++++|+|+...+++++.||.|+|||....+
T Consensus 161 ~iKyWqpnm---------------------------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 161 MIKYWQPNM---------------------------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred eEEecccch---------------------------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 999999875 3355555555 899999999988899999999999999999888
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
....+.+|.-.|.+++|+|...+|++|+.|..|++||.++++++.++.+|...|.++.|.| ++ ++|+
T Consensus 214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-------n~------N~Ll 280 (464)
T KOG0284|consen 214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-------NG------NWLL 280 (464)
T ss_pred hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-------CC------CeeE
Confidence 8778899999999999999999999999999999999999999999999999999999999 88 7999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
+++.|..++++|+++-+ .++++++|...|+++.
T Consensus 281 t~skD~~~kv~DiR~mk-----------------------------------------------El~~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTMK-----------------------------------------------ELFTYRGHKKDVTSLT 313 (464)
T ss_pred EccCCceEEEEehhHhH-----------------------------------------------HHHHhhcchhhheeec
Confidence 99999999999998533 3445678999999999
Q ss_pred EeC---CeEEEEECCCeEEEEeCCCCC---ccccCCCCcEE--EecCCCCceEeeecc
Q 008939 493 FTQ---ESVLTVCREGHIKIWMRPGVA---ESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 493 fsp---d~l~t~s~Dg~I~iW~~~~~~---~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
|+| +.|.+|+.||.|..|.+...+ +....|...|+ ++.|=|..|++|...
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 999 358999999999999988443 34446777887 556999999998665
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=237.45 Aligned_cols=292 Identities=14% Similarity=0.176 Sum_probs=233.4
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCC-CCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDK-DPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|.+.+-.++|+|. |.+|++++.| .|+||+...+.. .....+ .+|+..|..++|+|. +++|++|+.|.++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~---g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH---GRYLASASFDATV 85 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC---CcEEEEeeccceE
Confidence 45678889999999998 8889998888 999999986331 122222 357889999999999 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.||.-.... -+.+. ..++|...|.|++|+++|. +||++++|..|.||.+..+..
T Consensus 86 ~Iw~k~~~e----fecv~------~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddE--------------- 139 (312)
T KOG0645|consen 86 VIWKKEDGE----FECVA------TLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDE--------------- 139 (312)
T ss_pred EEeecCCCc----eeEEe------eeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCc---------------
Confidence 999755311 11111 2235999999999999999 999999999999999885321
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC---CCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS---KEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+..++.|...|..+.|+|...+|++++.|.+|++|+-. ..++++++.+|...|.+++|++.|..|+
T Consensus 140 --------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 140 --------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred --------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 34577889999999999999999999999999999999876 3468899999999999999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
++++|++|+||...+.- -..|...++.+.|. +| .|++++.|+.|+|+.-...-.-
T Consensus 212 s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--------~~-------~IaS~ggD~~i~lf~~s~~~d~------ 266 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--------NG-------VIASGGGDDAIRLFKESDSPDE------ 266 (312)
T ss_pred EecCCcceEeeeeccCc----chhcccceEeeeec--------cc-------ceEeccCCCEEEEEEecCCCCC------
Confidence 99999999999865221 12388899999995 34 7999999999999975521100
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce-EEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL-VAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~-~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~ 513 (548)
+..+.+ .....|...|++|+|.|. .|++++.||.|++|.+.
T Consensus 267 -----------------------------------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 -----------------------------------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -----------------------------------chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 011111 122468889999999993 59999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=250.63 Aligned_cols=337 Identities=16% Similarity=0.265 Sum_probs=274.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....+..+|.|+.|++..++.+.+.+++.+. .+.....|...++...|+|. |.++++|...|.|+|||..+.
T Consensus 20 ~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~--~~~iYtEH~~~vtVAkySPs---G~yiASGD~sG~vRIWdtt~~--- 91 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKSVIIRNIDNPA--SVDIYTEHAHQVTVAKYSPS---GFYIASGDVSGKVRIWDTTQK--- 91 (603)
T ss_pred cceEeccCCCCCeEEEeCCCEEEEEECCCcc--ceeeeccccceeEEEEeCCC---ceEEeecCCcCcEEEEeccCc---
Confidence 3456788999999999999999999999855 56666668888999999999 889999999999999998752
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC---CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
..++ ..+.....++|.+|+|+.++.++.++|... |.+.+||..+
T Consensus 92 --~hiL-----Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~-------------------------- 138 (603)
T KOG0318|consen 92 --EHIL-----KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN-------------------------- 138 (603)
T ss_pred --ceee-----eeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC--------------------------
Confidence 1111 112224588999999999999666666432 5677777543
Q ss_pred CCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
.+-.+.+|...|++++|-|... .+++++.|+.|.+|+=---+...+++.|..-|+|+.|+|||+++++.+.|+.|.+
T Consensus 139 --SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 139 --SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred --ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 3567788999999999999655 6899999999999987666777788889999999999999999999999999999
Q ss_pred EECCCceeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 368 WSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 368 wd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
||-.+++.+..+. +|.+.|.+|.|+| |+ ..|++++.|.+++|||+.+..+++++.....+....
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsP-------Ds------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSP-------DS------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECC-------CC------ceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 9999999999998 8999999999999 99 799999999999999999999999887644322211
Q ss_pred ecCCCCccccC-CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccc--
Q 008939 445 FSTGSQSAHWD-NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ-- 519 (548)
Q Consensus 445 ~~~~~~~~~~d-~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~-- 519 (548)
. ...|. ..+..-++.+.+.+++.....++..+.+|...|+++..+||. |++|+.||.|.-|+...+....
T Consensus 284 v-----G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 284 V-----GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred E-----EEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence 1 22332 334556677788888888888999999999999999999974 9999999999999987765332
Q ss_pred -cCCCCcEEEe
Q 008939 520 -SSSSETVLST 529 (548)
Q Consensus 520 -~~~~~~v~~~ 529 (548)
..|...|..+
T Consensus 359 g~~h~nqI~~~ 369 (603)
T KOG0318|consen 359 GKGHTNQIKGM 369 (603)
T ss_pred cccccceEEEE
Confidence 3455666544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=274.92 Aligned_cols=285 Identities=22% Similarity=0.349 Sum_probs=239.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+..++.++.|+++|+.++++..+ .+++|++..........+..|...|.+++|+|+ +.++++++.|++|+|||++
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d---~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD---GSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC---CcEEEEecCCceEEEeecc
Confidence 347899999999999999998766 999999965332255566778889999999999 7799999999999999994
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. ........ ..|...|++++|+|+++ ++++|+.|++|+|||++.
T Consensus 234 ~-----~~~~~~~l------~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~------------------------ 277 (456)
T KOG0266|consen 234 D-----DGRNLKTL------KGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT------------------------ 277 (456)
T ss_pred C-----CCeEEEEe------cCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC------------------------
Confidence 3 11222222 24999999999999996 999999999999999986
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecCCc--eEEEEEccCCCEEEEEeCC
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGA--LLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~--v~~l~~spdg~~l~sgs~d 362 (548)
..++..+.+|.+.|++++|++++++|++++.|+.|++||+.+++ ++..+..+... +.++.|+|++++|+++..|
T Consensus 278 --~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 278 --GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred --CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 35688899999999999999999999999999999999999998 55666666555 9999999999999999999
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEE---EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGV---AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v---~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.+++||+..+.++..+.+|...+.++ .+.+ ++ .++++++.|+.|.+||+.++..+..+
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~i~sg~~d~~v~~~~~~s~~~~~~l----- 417 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST-------GG------KLIYSGSEDGSVYVWDSSSGGILQRL----- 417 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccC-------CC------CeEEEEeCCceEEEEeCCccchhhhh-----
Confidence 999999999999999999998764332 3333 66 79999999999999999986655433
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCC--eEEEEE--CCCeEEEEeCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQE--SVLTVC--REGHIKIWMRP 513 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd--~l~t~s--~Dg~I~iW~~~ 513 (548)
.+| ...|..+.++|. .+++++ .|+.|++|..+
T Consensus 418 ------------------------------------------~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 ------------------------------------------EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ------------------------------------------cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 357 788899999985 477777 79999999865
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=268.09 Aligned_cols=294 Identities=18% Similarity=0.237 Sum_probs=243.5
Q ss_pred CCCCCceeEEeC-CCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 128 SSSTSMTNTNFD-GKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 128 ~h~~~v~~~~~~-~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
|..+.|+.+.|- |+..+++.+++. .+|+|++.+.. -.-+..|.+.+.++.-..+ |.+|++|+.|..+++|-+
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---c~ii~GH~e~vlSL~~~~~---g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---CQIIPGHTEAVLSLDVWSS---GDLLATGSKDKSVILWRL 394 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---eEEEeCchhheeeeeeccc---CcEEEEecCCceEEEEEe
Confidence 456777788775 567788888777 99999888743 2367789999999884333 679999999999999988
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
+.. ..+.. .......|...|.+++++..+...|++++.|+++++|++........ +..
T Consensus 395 ~~~---~~~~~-----~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~------------ 452 (775)
T KOG0319|consen 395 NNN---CSKSL-----CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIV------------ 452 (775)
T ss_pred cCC---cchhh-----hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cce------------
Confidence 431 01111 11223469999999999988887999999999999999986221111 100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
.+.-..-..|...|+|++++|+.+++|+|+.|.+.+||+++..+++..+.+|...|.|+.|+|..+.++++|.|.+|
T Consensus 453 ---~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 453 ---LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred ---ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence 01111335688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 445 (548)
+||.+.+..++++|.||+..|..+.|-. +| ..|+|++.||.|+||++++++|+.++.
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F~~-------~~------~qliS~~adGliKlWnikt~eC~~tlD---------- 586 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASFIR-------NG------KQLISAGADGLIKLWNIKTNECEMTLD---------- 586 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeeeee-------CC------cEEEeccCCCcEEEEeccchhhhhhhh----------
Confidence 9999999999999999999999999987 77 799999999999999999999876554
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
.|.+.|++++-++. .++||+.||.|.+|.=
T Consensus 587 -------------------------------------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 587 -------------------------------------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -------------------------------------hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 59999999999995 5899999999999983
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=264.21 Aligned_cols=305 Identities=18% Similarity=0.255 Sum_probs=254.8
Q ss_pred CCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 116 SGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 116 ~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
....++..+...+|.+.|..++++.+...+++++++.+.||+..+.+ .++++... .+.|..|-|. ++++++|.
T Consensus 359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k--ciRTi~~~--y~l~~~Fvpg---d~~Iv~G~ 431 (888)
T KOG0306|consen 359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK--CIRTITCG--YILASKFVPG---DRYIVLGT 431 (888)
T ss_pred ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc--eeEEeccc--cEEEEEecCC---CceEEEec
Confidence 34446668899999999999999999999999999999999999855 88888743 8999999998 88999999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.+|.+.+||+... . +... ...|.+.|.+++.+|++. .+++|+.|.+|++||....... +...
T Consensus 432 k~Gel~vfdlaS~-----~-l~Et------i~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~----~gt~- 493 (888)
T KOG0306|consen 432 KNGELQVFDLASA-----S-LVET------IRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSV----PGTQ- 493 (888)
T ss_pred cCCceEEEEeehh-----h-hhhh------hhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEecc----Cccc-
Confidence 9999999999872 1 1111 114899999999999999 8999999999999998541110 0000
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
.....+ ...+.++. +..|.|+.+|||+++|+++--|.+|+||-+.+-+....+.+|.-+|.|+..+||++.
T Consensus 494 ~k~lsl--------~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 494 KKVLSL--------KHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred ceeeee--------ccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe
Confidence 000000 00111111 378999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+++|+.|..|+||-++-|.|-..+.+|.+.|.+|.|.| .. ..+.++|.|+.|+-||-..-+++
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-------~~------~~FFt~gKD~kvKqWDg~kFe~i---- 627 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-------KT------HLFFTCGKDGKVKQWDGEKFEEI---- 627 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-------cc------eeEEEecCcceEEeechhhhhhh----
Confidence 99999999999999999999999999999999999999 66 79999999999999997765544
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
..+.+|...|++++..|+ ++++++.|..||+|+..
T Consensus 628 -------------------------------------------q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 628 -------------------------------------------QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred -------------------------------------------eeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 345579999999999998 49999999999999976
Q ss_pred C
Q 008939 514 G 514 (548)
Q Consensus 514 ~ 514 (548)
.
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 5
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=284.41 Aligned_cols=296 Identities=14% Similarity=0.189 Sum_probs=230.3
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC------CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK------DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~------~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
..+|.+.|.+++|+++|+++++++.| .|+||++..... .++..+. +...+.+++|+|.. +.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~--~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYI--KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCC--CCEEEEEeCCC
Confidence 34589999999999999999998888 999999864210 1333333 34578999998862 56899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.|++||+.+. +.+.. . ..|...|++++|+| ++. +|++|+.||.|++||++..
T Consensus 556 ~v~lWd~~~~-----~~~~~-~------~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~-------------- 608 (793)
T PLN00181 556 VVQVWDVARS-----QLVTE-M------KEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQG-------------- 608 (793)
T ss_pred eEEEEECCCC-----eEEEE-e------cCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCC--------------
Confidence 9999998751 22211 1 23889999999997 455 9999999999999999762
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
..+..+..+ ..|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+
T Consensus 609 ------------~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 609 ------------VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred ------------cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence 223333333 578999995 479999999999999999998765 466778899999999997 7789
Q ss_pred EEEEeCCCeEEEEECCCc------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 356 ILTGGEDDLVQVWSMEDR------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|++++.|+.|++||++.. .++..+.+|...+..+.|+| ++ .+|++++.|+.|++|+.....
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-------~~------~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-------SD------GYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-------CC------CEEEEEeCCCEEEEEECCCCC
Confidence 999999999999999743 56788999999999999999 87 699999999999999987665
Q ss_pred EEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeE
Q 008939 430 IVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHI 507 (548)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I 507 (548)
.+..+..... + . ..-.....|...|.+++|+|+ .|++|+.||.|
T Consensus 742 ~~~s~~~~~~---------------~---------~----------~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 742 PVLSYKFKTI---------------D---------P----------VSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred ceEEEecccC---------------C---------c----------ccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 4433221000 0 0 000012346678999999997 49999999999
Q ss_pred EEEeC
Q 008939 508 KIWMR 512 (548)
Q Consensus 508 ~iW~~ 512 (548)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=244.73 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=238.3
Q ss_pred CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
++..+.+..|..-|.|+++.|. ...+++|+.|+.|.|||+.+. ++.... .+|...|..+++++-.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~---n~wf~tgs~DrtikIwDlatg------~Lkltl------tGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG---NEWFATGSADRTIKIWDLATG------QLKLTL------TGHIETVRGVAVSKRH 205 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC---ceeEEecCCCceeEEEEcccC------eEEEee------cchhheeeeeeecccC
Confidence 3455667778899999999998 889999999999999999982 222222 2488999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
. +|++++.|+.|+.||+.. .+.++.+++|-..|.|++.+|.-..|++++.|..
T Consensus 206 p-YlFs~gedk~VKCwDLe~--------------------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst 258 (460)
T KOG0285|consen 206 P-YLFSAGEDKQVKCWDLEY--------------------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST 258 (460)
T ss_pred c-eEEEecCCCeeEEEechh--------------------------hhhHHHhccccceeEEEeccccceeEEecCCcce
Confidence 9 999999999999999986 3567888999999999999998899999999999
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+||||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++....+..|...|.+++.+| ..
T Consensus 259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-------~e 331 (460)
T KOG0285|consen 259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-------KE 331 (460)
T ss_pred EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-------ch
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999 65
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
+.+++++.| .|+-|++..++.++. +.
T Consensus 332 ------~~fASas~d-nik~w~~p~g~f~~n-----------------------------------------------ls 357 (460)
T KOG0285|consen 332 ------NLFASASPD-NIKQWKLPEGEFLQN-----------------------------------------------LS 357 (460)
T ss_pred ------hhhhccCCc-cceeccCCccchhhc-----------------------------------------------cc
Confidence 688888877 588898887765533 34
Q ss_pred cCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcccc----------CCCCcEE--EecCCCCceEeeecc--ccccc
Q 008939 483 VHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQS----------SSSETVL--STSSKDKPLLSSKVV--TSSYR 547 (548)
Q Consensus 483 ~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~----------~~~~~v~--~~s~d~~~l~s~~~~--g~~~~ 547 (548)
+|..-|+.++...|. +++|++.|.|.+||...+---+. ..+..|+ +|--.+..|+++... .-+||
T Consensus 358 gh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred cccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 689999999998875 89999999999999876542222 1233455 444566788888544 66666
Q ss_pred C
Q 008939 548 Q 548 (548)
Q Consensus 548 ~ 548 (548)
|
T Consensus 438 e 438 (460)
T KOG0285|consen 438 E 438 (460)
T ss_pred c
Confidence 4
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=257.59 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=224.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+...|-++.|+|...+++.+--+ .|.||+.+++. .+++++.....+....|-+. .+.+++|+.|.+|++|+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaR---knWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIAR---KNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeec---cceEEEecCCceEEEEecc
Confidence 366778899999999999998766 99999999966 89999999889999999887 7899999999999999998
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
+ ++++.... .|.+-|+||+.+|..+ ++++++.|-.|++||.+..
T Consensus 86 t-----~ekV~~Fe-------AH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~----------------------- 129 (794)
T KOG0276|consen 86 T-----GEKVKTFE-------AHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE----------------------- 129 (794)
T ss_pred c-----ceeeEEee-------ccccceeeeeecCCCC-eEEecCCccEEEEeeccCc-----------------------
Confidence 7 55555443 3999999999999999 9999999999999999863
Q ss_pred CCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC--CEEEEEeCCC
Q 008939 287 SKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG--KYILTGGEDD 363 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg 363 (548)
-...+.+.+|+.-|++++|.| |.+.+++++-|++|+||.+....+..++++|...|+|+.|-+-| .+|++|++|.
T Consensus 130 --wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 130 --WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred --eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 345678899999999999999 78899999999999999999999999999999999999998755 6999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+|+|||.++..|+++++||...|+.+.|+| .= ..|++|++||+++||+-.+-++..++
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-------~l------piiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-------EL------PIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecC-------CC------cEEEEecCCccEEEecCcceehhhhh
Confidence 999999999999999999999999999999 44 68999999999999998876655444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=246.29 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=236.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+..|...|-.+.|+++|+++|+++.| +..||++.. .+.+..+++..|...|..+.|+|+ .++|++++.+..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD---dryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD---DRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---CCeEEecCchHhe
Confidence 44667899999999999999999999998 899998654 334567788889999999999999 7899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.+||+.+. ....... . .+...+.+++|.||+. .|++|+.|+.+..||++.+
T Consensus 294 ~lwDv~tg-----d~~~~y~----~--~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn----------------- 344 (519)
T KOG0293|consen 294 SLWDVDTG-----DLRHLYP----S--GLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN----------------- 344 (519)
T ss_pred eeccCCcc-----hhhhhcc----c--CcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-----------------
Confidence 99999872 2221111 1 1467899999999999 8999999999999999742
Q ss_pred eecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+..|++- ...|.+++..+||+++++.+.|..|++++.++...+..+. ...+|+++..|.|++++++-
T Consensus 345 ----------~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 345 ----------ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVN 413 (519)
T ss_pred ----------hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEE
Confidence 22233322 1468999999999999999999999999998766554433 45789999999999999999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
-.+..|++||+++.+.+..+.||...-. .-+|--. +. ..+++|++|+.|+||+..++.++.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~------~~------~fiaSGSED~kvyIWhr~sgkll~----- 476 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG------ND------KFIASGSEDSKVYIWHRISGKLLA----- 476 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCC------Cc------ceEEecCCCceEEEEEccCCceeE-----
Confidence 9999999999999999999999976433 3345210 21 589999999999999998877654
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~ 514 (548)
.+.||...|++|+|+|. .+++|++||+||||....
T Consensus 477 ------------------------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 477 ------------------------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ------------------------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 45679999999999994 599999999999998654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-30 Score=225.56 Aligned_cols=280 Identities=19% Similarity=0.253 Sum_probs=227.9
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.++.+..|++.+..++|+|.. |..|++++.|..|++|++.. +.... ......+ .|+..|+.++|+|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~-----~~s~~-ck~vld~--~hkrsVRsvAwsp~g~- 74 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSS-----GDSWT-CKTVLDD--GHKRSVRSVAWSPHGR- 74 (312)
T ss_pred eEEeecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCC-----CCcEE-EEEeccc--cchheeeeeeecCCCc-
Confidence 566777888899999999973 56899999999999999874 11111 1111112 4899999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|.++.||.-..+ ..+.+..+.+|+..|.|++|+++|.+||+++.|+.|-
T Consensus 75 ~La~aSFD~t~~Iw~k~~~------------------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVW 130 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDG------------------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVW 130 (312)
T ss_pred EEEEeeccceEEEeecCCC------------------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEE
Confidence 9999999999999986531 2456889999999999999999999999999999999
Q ss_pred EEeCCCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC---CceeEEeccCCCCCeEEEEEecCCCCC
Q 008939 325 VFDYSKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---DRKVVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 325 vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
||.+..+ +++..++.|...|.-+.|+|...+|++++.|++|++|+-. +.++++++.+|...|.+++|+|
T Consensus 131 iWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~----- 205 (312)
T KOG0645|consen 131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN----- 205 (312)
T ss_pred EEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-----
Confidence 9999744 5677899999999999999999999999999999999876 3468999999999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~ 478 (548)
.| .+|++++.|+.++||-+.+.- .
T Consensus 206 --~G------~rl~s~sdD~tv~Iw~~~~~~-----~------------------------------------------- 229 (312)
T KOG0645|consen 206 --IG------SRLVSCSDDGTVSIWRLYTDL-----S------------------------------------------- 229 (312)
T ss_pred --CC------ceEEEecCCcceEeeeeccCc-----c-------------------------------------------
Confidence 88 799999999999999865211 1
Q ss_pred EEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC-c--------cccCCCCcEE--EecCC-CCceEeeeccc
Q 008939 479 VAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA-E--------SQSSSSETVL--STSSK-DKPLLSSKVVT 543 (548)
Q Consensus 479 ~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~-~--------~~~~~~~~v~--~~s~d-~~~l~s~~~~g 543 (548)
..|...++.+.|..+.|++++.|+.|+++...... + ....|.-.|. .+.|. ..+|+++...|
T Consensus 230 ---~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 230 ---GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ---hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 13778899999995569999999999999865431 1 1123444443 77884 56688877665
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=243.19 Aligned_cols=290 Identities=12% Similarity=0.149 Sum_probs=238.1
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+..+...++.+.|.|+ -..+++++.|+.|++||..+. .+.. ..++|...+.+|+|+..|.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~---~~~v~~as~d~tikv~D~~tg------~~e~------~LrGHt~sv~di~~~a~Gk- 163 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPS---EALVVSASEDATIKVFDTETG------ELER------SLRGHTDSVFDISFDASGK- 163 (406)
T ss_pred chhhhhccccceeeeeeccC---ceEEEEecCCceEEEEEccch------hhhh------hhhccccceeEEEEecCcc-
Confidence 45555667778899999998 567888889999999999872 1221 1235888999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|-.+++||..+. ...++.+.+|+..|.+++|-|.|.+|++++.|.+|+
T Consensus 164 ~l~tcSsDl~~~LWd~~~~-------------------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTF-------------------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred EEEecCCccchhheeHHHH-------------------------HHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 9999999999999999762 233556677889999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC--
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG-- 402 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg-- 402 (548)
.|++.++.++.++.+|...|.-++.+.||.++++++.|.+|++|-+.++++...++.|+-+|.+++|.|.-..|+...
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998644332110
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
........+++++.|+.|++||+.++.|+.++ .
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----------------------------------------------~ 331 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----------------------------------------------V 331 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEE-----------------------------------------------e
Confidence 00112368999999999999999999877544 4
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc--CCCCcEE--EecCCCCceEeeecc
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS--SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~--~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+|.+.|.+++|+|. +|+++.+|+++++||+........ .|..-+. .|--+--++++|.+.
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence 69999999999996 599999999999999988763322 4444444 455555578888664
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=231.40 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=237.8
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+-..+|.+.|..+.|+|+|.++++++.| .|.+|++... .+....+..|...|..+.|.++ ++.|++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d---~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRD---GSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccC---CCEEEEecCCceEEE
Confidence 4567899999999999999999999988 9999996643 3567777899999999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++ ++..... +.|...|+.+.-+.-|..++.+++.|++++|||+++... ...++
T Consensus 117 wD~~t-----G~~~rk~-------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~----------- 172 (338)
T KOG0265|consen 117 WDAET-----GKRIRKH-------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE----------- 172 (338)
T ss_pred Eeccc-----ceeeehh-------ccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-----------
Confidence 99988 3333221 248888999886666666888899999999999996321 11110
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+..++++.|..++..+.+|+-|+.|++||++.+.....+.+|.+.|+.+..+|+|.++.+-+.|
T Consensus 173 ---------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd 237 (338)
T KOG0265|consen 173 ---------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD 237 (338)
T ss_pred ---------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccccc
Confidence 12568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCC----ceeEEeccCCC----CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 363 DLVQVWSMED----RKVVAWGEGHN----SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 363 g~I~vwd~~~----~~~~~~~~~h~----~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.++++||++. .+++..+++|. ......+|+| ++ ..+.+++.|..+.+||.....++.
T Consensus 238 ~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-------~~------~~i~ags~dr~vyvwd~~~r~~ly-- 302 (338)
T KOG0265|consen 238 NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-------NG------TKITAGSADRFVYVWDTTSRRILY-- 302 (338)
T ss_pred ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-------CC------CccccccccceEEEeecccccEEE--
Confidence 9999999975 35677887754 3345677888 88 688999999999999987755543
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+.||.+.|+.++|+|. .|.+++.|.+|.+=+
T Consensus 303 ---------------------------------------------klpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 303 ---------------------------------------------KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ---------------------------------------------EcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 34579999999999996 589999999998744
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-30 Score=234.99 Aligned_cols=321 Identities=13% Similarity=0.148 Sum_probs=260.9
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...+.+++.+|+ .+++++|+.|..-++|++.+. ..+.. ...|+..|+++.|+.++.
T Consensus 55 dS~~tF~~H~~svFavsl~P~---~~l~aTGGgDD~AflW~~~~g-----e~~~e-------ltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN---NNLVATGGGDDLAFLWDISTG-----EFAGE-------LTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cceeehhhcCCceEEEEeCCC---CceEEecCCCceEEEEEccCC-----cceeE-------ecCCCCceEEEEEccCce
Confidence 356777889999999999997 889999999999999999872 22111 124999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+||+|..+|.|+||+..+.+.. ..+...-..|.=+.|+|-+..|+.|+.||.+
T Consensus 120 -lLATGdmsG~v~v~~~stg~~~--------------------------~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 120 -LLATGDMSGKVLVFKVSTGGEQ--------------------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred -EEEecCCCccEEEEEcccCceE--------------------------EEeecccCceEEEEecccccEEEeecCCCcE
Confidence 9999999999999999873221 1111122567889999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEEEecCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg 402 (548)
.+|.+.++.....+.+|..++++=.|.|||+.++++..|++|++||+.+++++..+... .....++.++. ++
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-------~~ 245 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-------AG 245 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-------cc
Confidence 99999988888889999999999999999999999999999999999999999888742 34556777766 66
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---------CCCCCceecCCCCccccCCeeeecccCCCCceeecC
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP 473 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~ 473 (548)
..+++|..++.+++-+..+++.+...... ....++.+.+.+. --...+.|.+++.+-+||+.
T Consensus 246 ------~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss---~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 246 ------STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS---KLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred ------ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc---ccchhhcccccceEEEEecc
Confidence 78999999999999999999888766531 2223333333321 11234789999999999998
Q ss_pred CCCceEEeecCCCCeeEEEEeC-CeEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 474 KLSPLVAHRVHTEPLSGLIFTQ-ESVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 474 ~~~~~~~~~~h~~~V~~l~fsp-d~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
...+-... .|..+|+.+.|-+ ++|++++.||.|++||.+++. ....+|...|+ +++||.+++++....+
T Consensus 317 ~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 317 ASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred cchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 87766655 4899999999999 579999999999999988876 45568999999 7789999999987663
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=254.84 Aligned_cols=286 Identities=19% Similarity=0.298 Sum_probs=242.6
Q ss_pred ccccCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+++|...|.++.|.| .+.++++++.| .|+||++-. ..+.++++..|...|..++|+++ +..+++++.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~---g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNC---GTSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhcccc---CCeeeeeecceee
Confidence 567899999999999999 88888888888 999999886 24699999999999999999999 8889999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+++ ++ +....+ ....++|+.|+|++.++|++|..|+.|+.||++.+
T Consensus 283 KlwDtET-----G~-~~~~f~-------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------- 332 (503)
T KOG0282|consen 283 KLWDTET-----GQ-VLSRFH-------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------- 332 (503)
T ss_pred eeecccc-----ce-EEEEEe-------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-----------------
Confidence 9999998 33 332232 35678999999999779999999999999999972
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sg 359 (548)
+.++.+..|-++|..+.|-++++++++.+.|+.++||+.+....+..+. .+.-...||..+|++++++.-
T Consensus 333 ---------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 333 ---------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred ---------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 4466677788999999999999999999999999999999876654322 223356789999999999999
Q ss_pred eCCCeEEEEECCCc---eeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 360 GEDDLVQVWSMEDR---KVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 360 s~dg~I~vwd~~~~---~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+.|+.|.++.+... .....+++|. +.-..+.|+| || .+|++|..||.+.+||.++-+++..
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-------DG------~~l~SGdsdG~v~~wdwkt~kl~~~- 469 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-------DG------RTLCSGDSDGKVNFWDWKTTKLVSK- 469 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-------CC------CeEEeecCCccEEEeechhhhhhhc-
Confidence 99999999987643 3445677885 4566889999 99 7999999999999999998665443
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~ 511 (548)
++.|.+++..+.|+|. .++|++.||.|++|+
T Consensus 470 ----------------------------------------------lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 ----------------------------------------------LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ----------------------------------------------cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4468999999999995 499999999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-30 Score=236.97 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=238.7
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
|..=|..+... ++.|++++.| .++|||... +.+..+..|.+.+..++|--.......+++++.|..+++|..+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 44444444444 6788888877 999999984 47788888999998777755433345799999999999998876
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc-cceeeeecCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD-QTQFSVAHPRY 286 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 286 (548)
. ....... +...+|+..|-++...+++. .+++|+.|.+|.||+...+. ...+..... ...........
T Consensus 179 ~-----~~~~~~~---~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~--~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 179 G-----ENKVKAL---KVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDE--EDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred c-----hhhhhHH---hHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCc--cccccccchhhhhhhhhhhcc
Confidence 2 1111111 11125999999999999999 99999999999999943211 111111110 00000111123
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
..+.|+..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+.. ...++|+.++|..++|++|+.|..|+
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCcee
Confidence 45789999999999999999988 66899999999999999999999888775 46799999999999999999999999
Q ss_pred EEECCCce---eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 367 VWSMEDRK---VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 367 vwd~~~~~---~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
+||.+++. ..+.|.+|.++|.++.|+| ... ++|++++.|+++++||+++..
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp-------~~~-----~~~~S~S~D~t~klWDvRS~k-------------- 379 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSP-------TNE-----FQLVSGSYDNTVKLWDVRSTK-------------- 379 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCC-------CCc-----eEEEEEecCCeEEEEEeccCC--------------
Confidence 99998863 5678889999999999999 331 799999999999999998744
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMR 512 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~ 512 (548)
.|+..+.+|.+.|.++.|... +|++|+.|.+|+|+.-
T Consensus 380 --------------------------------~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 --------------------------------APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred --------------------------------CcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 244455679999999999986 7999999999999874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-29 Score=242.77 Aligned_cols=277 Identities=22% Similarity=0.350 Sum_probs=228.3
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..|...+.+++|+|+ +.+|++++.+|.|++|++... +..... ..|...+..+.|+|+++ .|
T Consensus 3 ~~~~~h~~~i~~~~~~~~---~~~l~~~~~~g~i~i~~~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~-~l 66 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD---GKLLATGSGDGTIKVWDLETG-----ELLRTL-------KGHTGPVRDVAASADGT-YL 66 (289)
T ss_pred hHhcccCCCEEEEEEcCC---CCEEEEeecCcEEEEEEeeCC-----CcEEEE-------ecCCcceeEEEECCCCC-EE
Confidence 345568889999999998 789999999999999998862 111111 13677889999999997 89
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++++.||.|++||+... ..+..+..|...|.++.|+++++++++++.|+.|++|
T Consensus 67 ~~~~~~~~i~i~~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 67 ASGSSDKTIRLWDLETG--------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred EEEcCCCeEEEEEcCcc--------------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999999999999852 3355566777899999999998888888889999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
|+++++.+..+..|...+.+++|+|+++++++++.|+.|++||+++++.+..+..|...|.++.|+| ++
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~---- 189 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-------DG---- 189 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-------Cc----
Confidence 9998988888888999999999999999999888899999999999988888889999999999999 87
Q ss_pred eeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE 486 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~ 486 (548)
..+++++.|+.|++||++.++.+..+ ..|..
T Consensus 190 --~~l~~~~~~~~i~i~d~~~~~~~~~~-----------------------------------------------~~~~~ 220 (289)
T cd00200 190 --EKLLSSSSDGTIKLWDLSTGKCLGTL-----------------------------------------------RGHEN 220 (289)
T ss_pred --CEEEEecCCCcEEEEECCCCceecch-----------------------------------------------hhcCC
Confidence 68888989999999999876554332 24677
Q ss_pred CeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 487 PLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 487 ~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|.++.|+|+. +++++.||.|++|++..... ....+...+. ++++++++|+++...|.+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 89999999963 66666699999999885442 2224555565 788999999998877543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=250.90 Aligned_cols=380 Identities=15% Similarity=0.177 Sum_probs=300.2
Q ss_pred cccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 122 GSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+.+.+|...|+.+.|+..|.++++++.| .|.|||+-.+. -...++.|++.++..-|... ...|++.+.|+.|
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~--Gl~rL~GHkd~iT~~~F~~~---~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE--GLFRLRGHKDSITQALFLNG---DSFLVSVSKDSMI 173 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce--eeEEeecchHHHhHHhccCC---CeEEEEeccCceE
Confidence 356788999999999999999999999999 99999998744 78889999999999888875 6789999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC-----------
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS----------- 269 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----------- 269 (548)
++||++++ .+..... .|...|+.+++.+ . +++++..|+.+++|++..+......
T Consensus 174 K~WdL~tq------hCf~Thv------d~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 174 KFWDLETQ------HCFETHV------DHRGEIWALVLDE--K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred EEEecccc------eeeeEEe------cccceEEEEEEec--c-eEEEEecCCceEEEEeecccccccccccceeeccce
Confidence 99999973 2222111 3899999999998 3 8999999999999999221100000
Q ss_pred ---------cccccc-cceeeeec--------------------------------------------------------
Q 008939 270 ---------FPVIKD-QTQFSVAH-------------------------------------------------------- 283 (548)
Q Consensus 270 ---------~~~~~~-~~~~~~~~-------------------------------------------------------- 283 (548)
.....+ ...|.+.+
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 000000 00000000
Q ss_pred ------------CCCCC------------------CCC---------eeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 284 ------------PRYSK------------------SNP---------IARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 284 ------------~~~~~------------------~~~---------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
..... ... -..+.+|...|.+++||.+...+++++ .+.++
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Sik 397 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIK 397 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEE
Confidence 00000 000 133456889999999999987777775 56899
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+|+..+.+++.++.. +.+.+..|.|.++++++|...|.+.+||+.....+.+.++|++.|+.++..| |+
T Consensus 398 iWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-------D~-- 466 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-------DN-- 466 (888)
T ss_pred EEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-------CC--
Confidence 999999999999875 4899999999999999999999999999999999999999999999999999 98
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeE-------------EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEI-------------VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
..+++++.|.+|++||..--.. .+.++....+.++.++|++ ..+.++-++..+++|-
T Consensus 467 ----~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg------k~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 467 ----KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG------KLLAVSLLDNTVKVYF 536 (888)
T ss_pred ----CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC------cEEEEEeccCeEEEEE
Confidence 7899999999999999752111 1334444667777888886 6678888899999999
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
+.+.+....+.||.-||.+|..+||. |+|||.|..|+||-+.-+. ...+.|...|+ .|-|+.....++++.+
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 99999999999999999999999985 9999999999999998776 45568888887 6779888888877664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.37 Aligned_cols=275 Identities=18% Similarity=0.249 Sum_probs=238.8
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
+..+|.++.|+|..+ .++++-.+|.|.||+.++ ...++.++..+-+|++..|-
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyet--------------------------qtmVksfeV~~~PvRa~kfi 64 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYET--------------------------QTMVKSFEVSEVPVRAAKFI 64 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEeccc--------------------------ceeeeeeeecccchhhheee
Confidence 688999999999999 899999999999999987 35677778888999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVS 387 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~ 387 (548)
+-.+++++|+.|..||||++.+++.+..+.+|.+.|+|++.+|...+++++++|-.|++||.+.. .+.++++||+..|.
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 98999999999999999999999999999999999999999999999999999999999999874 78899999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
+|+|.|. |. +.+++++.|++|++|.+....+..+++.+ ..++++.+-+.+. ...+..|..|..
T Consensus 145 qv~fnPk------D~------ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd----kpylIsgaDD~t 208 (794)
T KOG0276|consen 145 QVAFNPK------DP------NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD----KPYLISGADDLT 208 (794)
T ss_pred EEEecCC------Cc------cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC----cceEEecCCCce
Confidence 9999993 44 68999999999999999999999999865 4567777766652 234577888999
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc--CCCCcEEEec--CCCCceEeee
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS--SSSETVLSTS--SKDKPLLSSK 540 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~--~~~~~v~~~s--~d~~~l~s~~ 540 (548)
+++||.++..+++++.||...|..+.|+|.. |+||++||++|||+-.+-..+.. -.-+.++++. ..++.++.|-
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 9999999999999999999999999999985 99999999999999766553322 2346677665 6666677777
Q ss_pred cccccc
Q 008939 541 VVTSSY 546 (548)
Q Consensus 541 ~~g~~~ 546 (548)
..|+++
T Consensus 289 Deg~i~ 294 (794)
T KOG0276|consen 289 DEGSVT 294 (794)
T ss_pred cCCcEE
Confidence 666653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=261.44 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=226.7
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
....+..++|+|. .-.++++..+|.|++||.+-. ..+... ..|.++|..++|+|.++ +|++|+.
T Consensus 8 kSsRvKglsFHP~---rPwILtslHsG~IQlWDYRM~-----tli~rF-------deHdGpVRgv~FH~~qp-lFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPK---RPWILTSLHSGVIQLWDYRMG-----TLIDRF-------DEHDGPVRGVDFHPTQP-LFVSGGD 71 (1202)
T ss_pred ccccccceecCCC---CCEEEEeecCceeeeehhhhh-----hHHhhh-------hccCCccceeeecCCCC-eEEecCC
Confidence 3446667777777 557999999999999998762 111111 13899999999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|-.|+||+... ...+..+.+|-.-|..+.|++.-.+|++++.|.+|+||+..++
T Consensus 72 DykIkVWnYk~--------------------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 72 DYKIKVWNYKT--------------------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred ccEEEEEeccc--------------------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 99999999986 4567788899999999999999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC--------c---------------------eeEEeccCC
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED--------R---------------------KVVAWGEGH 382 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~--------~---------------------~~~~~~~~h 382 (548)
+++..+.+|...|.|..|+|...+++++|-|.+|+|||+.- + -..+.++||
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 99999999999999999999999999999999999999841 0 123456799
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
+..|+-++|+| .- .+|+||+.|..|++|.+..-+
T Consensus 206 DRGVNwaAfhp-------Tl------pliVSG~DDRqVKlWrmnetK--------------------------------- 239 (1202)
T KOG0292|consen 206 DRGVNWAAFHP-------TL------PLIVSGADDRQVKLWRMNETK--------------------------------- 239 (1202)
T ss_pred ccccceEEecC-------Cc------ceEEecCCcceeeEEEecccc---------------------------------
Confidence 99999999999 44 699999999999999986532
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCcccc-C-CCCcEE--EecCCCCce
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQS-S-SSETVL--STSSKDKPL 536 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~-~-~~~~v~--~~s~d~~~l 536 (548)
.|+ +.+.++|.+.|+++.|+| +.|++.++|++||+||+..+...+. . ..+..+ +..|..+++
T Consensus 240 ------aWE------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 240 ------AWE------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF 307 (1202)
T ss_pred ------cee------ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCccee
Confidence 122 334579999999999999 5799999999999999987763333 2 233333 667999999
Q ss_pred Eeeecccc
Q 008939 537 LSSKVVTS 544 (548)
Q Consensus 537 ~s~~~~g~ 544 (548)
+.|+..|-
T Consensus 308 AAgHDsGm 315 (1202)
T KOG0292|consen 308 AAGHDSGM 315 (1202)
T ss_pred eeecCCce
Confidence 99988864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=259.43 Aligned_cols=270 Identities=21% Similarity=0.334 Sum_probs=224.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.|+.|+++ +..|+.++.++.|++|++... +. ........|...|++++|+|++. ++++++.|
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~~~~~i~~~~~~~~-----~~-----~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D 224 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAASSDGLIRIWKLEGI-----KS-----NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDD 224 (456)
T ss_pred cCceEEEEEcCC---CCeEEEccCCCcEEEeecccc-----cc-----hhhccccccccceeeeEECCCCc-EEEEecCC
Confidence 568899999999 888999999999999998441 10 01111134899999999999999 99999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
++|++||+... ...++.+.+|...|++++|+|+++++++|+.|++|+|||+++++
T Consensus 225 ~tiriwd~~~~-------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 225 KTLRIWDLKDD-------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ceEEEeeccCC-------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 99999999442 35578889999999999999999999999999999999999999
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCC--eEEEEEecCCCCCCCCCCcccee
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~--V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++..+.+|.+.|.+++|++++.+|++++.|+.|+|||+.++. ++..+.++... ++.+.|+| ++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-------~~------ 346 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-------NG------ 346 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-------CC------
Confidence 999999999999999999999999999999999999999998 66778777665 99999999 99
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC-
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP- 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~- 487 (548)
.+|+++..|+.+++||+..+.++..+.. |...
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~~~~~~~~-----------------------------------------------~~~~~ 379 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGKSVGTYTG-----------------------------------------------HSNLV 379 (456)
T ss_pred cEEEEecCCCeEEEEEccCCcceeeecc-----------------------------------------------cCCcc
Confidence 7999999999999999999887765543 3222
Q ss_pred --eeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCC-CCcEE--EecCCCCceEeeec
Q 008939 488 --LSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSS-SETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 488 --V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~-~~~v~--~~s~d~~~l~s~~~ 541 (548)
+.+..+++. .+++++.|+.|++|++.+... ....| ...+. ++.+...+++++..
T Consensus 380 ~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 380 RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred eeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 223333443 499999999999999987553 33355 44444 77788888888864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=224.67 Aligned_cols=277 Identities=16% Similarity=0.273 Sum_probs=219.4
Q ss_pred CceEEEecCCCCCCceEEEEE-------cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGL-------NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~-------~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
.-..+.|+|-.. ++|+++. -.|.++|.++.. .+.+.....+. -.+.+.+++|++..++.++
T Consensus 10 ~GysvqfSPf~~--nrLavAt~q~yGl~G~G~L~ile~~~-----~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~ 77 (311)
T KOG0277|consen 10 HGYSVQFSPFVE--NRLAVATAQHYGLAGNGRLFILEVTD-----PKGIQECQSYD-----TEDGLFDVAWSENHENQVI 77 (311)
T ss_pred ccceeEeccccc--chhheeehhhcccccCceEEEEecCC-----CCCeEEEEeee-----cccceeEeeecCCCcceEE
Confidence 346788888754 3455543 347799988752 12222222221 4678999999999998999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vw 326 (548)
+++.||.+++||+.. ..+|++.|+.|+..|.++.|++ +.+.+++++.|++|++|
T Consensus 78 ~a~GDGSLrl~d~~~-------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 78 AASGDGSLRLFDLTM-------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred EEecCceEEEeccCC-------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 999999999999654 2578999999999999999998 67778888999999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccC-CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~ 405 (548)
+....+-++++.+|...|...+|+|. .+++++++.|+.+++||++.......+..|...|.++.|+.+ +-
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky------~~--- 203 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY------NH--- 203 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc------CC---
Confidence 99999999999999999999999994 568999999999999999875444448889999999999863 44
Q ss_pred ceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 406 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 406 ~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
+++++++.|+.|+.||+++-+ .|+..+.+|.
T Consensus 204 ---~vl~Tg~vd~~vr~wDir~~r----------------------------------------------~pl~eL~gh~ 234 (311)
T KOG0277|consen 204 ---NVLATGGVDNLVRGWDIRNLR----------------------------------------------TPLFELNGHG 234 (311)
T ss_pred ---cEEEecCCCceEEEEehhhcc----------------------------------------------ccceeecCCc
Confidence 799999999999999998632 3566777999
Q ss_pred CCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC---ccccCCCCcEE--EecC-CCCceEeeecccccc
Q 008939 486 EPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA---ESQSSSSETVL--STSS-KDKPLLSSKVVTSSY 546 (548)
Q Consensus 486 ~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~---~~~~~~~~~v~--~~s~-d~~~l~s~~~~g~~~ 546 (548)
-.|+.|.|+|. .|++++.|-++||||...+. +....|.+-+. .+|+ +..++|+....+.+|
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 99999999996 39999999999999977544 33345666665 5563 455677666655443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=240.55 Aligned_cols=256 Identities=18% Similarity=0.258 Sum_probs=216.5
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....|+|+.+. ++ .+++|..|.+|+|||... ...+..+.+|++.|.|+.|.
T Consensus 196 ~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~--------------------------~~c~~~L~GHtGSVLCLqyd 246 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNS--------------------------LECLKILTGHTGSVLCLQYD 246 (499)
T ss_pred cCCceEEEEec--ch-hhhcccccCceEEecccc--------------------------HHHHHhhhcCCCcEEeeecc
Confidence 56789999985 33 799999999999999876 34567788999999999985
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce---eEEeccCCCCC
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNSW 385 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~---~~~~~~~h~~~ 385 (548)
.+.|++|+.|.+|+|||.++++++.++..|...|..+.|+ ..++++++.|..|.+||+.... +...+.||...
T Consensus 247 --~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 247 --ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred --ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 5699999999999999999999999999999999999997 3489999999999999998754 44567899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|+.+.|+. ++|++++.|.+|++|++.++++++.+..+.. +.++.+ .+..+..|+.|
T Consensus 323 VNvVdfd~---------------kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--------r~rlvVSGSSD 379 (499)
T KOG0281|consen 323 VNVVDFDD---------------KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--------RDRLVVSGSSD 379 (499)
T ss_pred eeeecccc---------------ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--------cCeEEEecCCC
Confidence 99999964 6999999999999999999999999876422 222221 24566889999
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEEEecCCC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAES-----------QSSSSETVLSTSSKD 533 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~~~s~d~ 533 (548)
..+++||+..+.++..++||++-|.++.|....|++|+.||+|++||+...... ...|...|..+-.|.
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 999999999999999999999999999999999999999999999998776533 225666777666776
Q ss_pred CceEeee
Q 008939 534 KPLLSSK 540 (548)
Q Consensus 534 ~~l~s~~ 540 (548)
..|++++
T Consensus 460 fqIvsss 466 (499)
T KOG0281|consen 460 FQIISSS 466 (499)
T ss_pred eEEEecc
Confidence 6666653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=221.35 Aligned_cols=265 Identities=20% Similarity=0.340 Sum_probs=213.3
Q ss_pred CCeEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 150 GDAIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 150 ~d~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
+..+.|-++..+. ......+. ..+....++|++.. .+.++++.-||.+++||+.. +.+++.... .
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~--e~~~~~a~GDGSLrl~d~~~----~s~Pi~~~k-------E 102 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENH--ENQVIAASGDGSLRLFDLTM----PSKPIHKFK-------E 102 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCC--cceEEEEecCceEEEeccCC----CCcchhHHH-------h
Confidence 3488899986432 12233333 35688999999985 45899999999999999653 222332222 3
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|+.+|.++.|++.....+++++.|++|++|+... .+.+..+.+|...|...+|+
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r--------------------------~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR--------------------------PNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCC--------------------------CcceEeecCCccEEEEEecC
Confidence 8999999999998877899999999999999875 36688899999999999999
Q ss_pred C-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCC
Q 008939 309 T-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSW 385 (548)
Q Consensus 309 p-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~ 385 (548)
| .++++++++.|+.+++||++..-....+..|...|.|+.|+. +...|++|+.|+.|++||++.- .++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 9 788999999999999999985443344888999999999997 4567899999999999999984 578889999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|+.|+|+|. .. .+|++++.|-+++|||...+...
T Consensus 237 VRkvk~Sph------~~------~lLaSasYDmT~riw~~~~~ds~---------------------------------- 270 (311)
T KOG0277|consen 237 VRKVKFSPH------HA------SLLASASYDMTVRIWDPERQDSA---------------------------------- 270 (311)
T ss_pred EEEEecCcc------hh------hHhhhccccceEEecccccchhh----------------------------------
Confidence 999999992 22 58999999999999998754322
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeC
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMR 512 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~ 512 (548)
+.+...|++-|..+.|++- .+++++.|+.++||+.
T Consensus 271 ------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 ------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 1122358888999999873 5999999999999983
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=269.44 Aligned_cols=284 Identities=18% Similarity=0.209 Sum_probs=222.3
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc--ceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK--KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
..|...+.+++|+|+ +.+|++|+.|+.|++||+......... ...... .+...+.+++|+|....+|+
T Consensus 480 ~~~~~~V~~i~fs~d---g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDRD---GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-------ASRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred cCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEECCcccccccccccceEEe-------cccCceeeEEeccCCCCEEE
Confidence 336778999999998 889999999999999998642111000 000001 13567999999986544899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vw 326 (548)
+++.||.|++||+.+ ...+..+..|.+.|++++|+| ++.+|++++.|+.|++|
T Consensus 550 s~~~Dg~v~lWd~~~--------------------------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 550 SSNFEGVVQVWDVAR--------------------------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred EEeCCCeEEEEECCC--------------------------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 999999999999875 234667788999999999997 78999999999999999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
|+++++.+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. ++
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--------~~-- 672 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--------DS-- 672 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--------CC--
Confidence 99999888888754 679999995 578999999999999999998765 567788999999999996 44
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
..|++++.|+.|++||++.+... ....++..+.+|
T Consensus 673 ----~~lvs~s~D~~ikiWd~~~~~~~-----------------------------------------~~~~~l~~~~gh 707 (793)
T PLN00181 673 ----STLVSSSTDNTLKLWDLSMSISG-----------------------------------------INETPLHSFMGH 707 (793)
T ss_pred ----CEEEEEECCCEEEEEeCCCCccc-----------------------------------------cCCcceEEEcCC
Confidence 47999999999999998753200 011345567789
Q ss_pred CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc---------------ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 485 TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES---------------QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 485 ~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~---------------~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...+..+.|+|+ .|++|+.|+.|++|+....... ...+...|. +|+|+++.|+++...|.+
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 999999999996 5999999999999996543210 012223344 788999999999887654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=214.00 Aligned_cols=254 Identities=15% Similarity=0.168 Sum_probs=214.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
...+.++|..+.|+.+|+|.++++.| +|++|+...+. .|++...|..++..++.+.+ ...+++|+.|..|++||
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--liktYsghG~EVlD~~~s~D---nskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--LIKTYSGHGHEVLDAALSSD---NSKFASCGGDKAVQVWD 87 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--eeeeecCCCceeeecccccc---ccccccCCCCceEEEEE
Confidence 35678899999999999999998887 99999998866 99999999999999999888 67899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++.+. ....|...|+.++|+.+.. ++++|+.|..+++||-+..
T Consensus 88 V~T-----Gkv~R-------r~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--------------------- 133 (307)
T KOG0316|consen 88 VNT-----GKVDR-------RFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--------------------- 133 (307)
T ss_pred ccc-----Ceeee-------ecccccceeeEEEecCcce-EEEeccccceeEEEEcccC---------------------
Confidence 998 23222 1235999999999999988 9999999999999999863
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+|++.+..-...|.++... +..|++|+.||++|.||++.|++...+-+ .+|+|+.|++|++.+++++-|.+
T Consensus 134 ---s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 134 ---SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred ---CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccce
Confidence 246788887778899999875 56899999999999999999988766554 58999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
|++.|-++++.++.+++|...=..+..+- .+ .. ..+++|++||.|.+||+.....+..+..
T Consensus 207 lrLlDk~tGklL~sYkGhkn~eykldc~l----~q-sd------thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 207 LRLLDKETGKLLKSYKGHKNMEYKLDCCL----NQ-SD------THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeecccchhHHHHHhcccccceeeeeeee----cc-cc------eeEEeccCCceEEEEEeccceeeeeecc
Confidence 99999999999999999987555444322 00 11 5899999999999999998877655543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=249.38 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=219.3
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
..+-.++|+|.-.+|+++-.. .|++||.+-+. .+..+..|...|..++|+|. +.++++|+.|-.|++|+..+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~---qplFVSGGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPT---QPLFVSGGDDYKIKVWNYKT-- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCC---CCeEEecCCccEEEEEeccc--
Confidence 344578999999999998876 99999999866 89999999999999999999 77999999999999999886
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+++.... .+|-+-|..+.|++.-+ ++++++.|-+|+||+..+ +
T Consensus 83 ----rrclftL------~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs--------------------------r 125 (1202)
T KOG0292|consen 83 ----RRCLFTL------LGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS--------------------------R 125 (1202)
T ss_pred ----ceehhhh------ccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC--------------------------C
Confidence 3333222 25899999999999999 999999999999999987 5
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--------C-------------------e--EEEeeeec
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--------E-------------------Q--LICGGKSY 340 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--------~-------------------~--~~~~~~~~ 340 (548)
+.+..+.+|..-|+|..|+|...++++++-|.+|||||+.- + . ....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 78999999999999999999999999999999999999841 1 0 12346789
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
...|+-++|+|.-.+|++|++|+.|++|.+...+ .+.+.++|...|+++-|+| .. .+|+|.++|+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-------~q------~lIlSnsEDk 272 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-------HQ------DLILSNSEDK 272 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-------cc------ceeEecCCCc
Confidence 9999999999999999999999999999998755 4677889999999999999 55 6999999999
Q ss_pred eEEEEECCCCeEEeeeec
Q 008939 419 RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~ 436 (548)
.|++||+.....+++++.
T Consensus 273 sirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 273 SIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred cEEEEecccccceeeeec
Confidence 999999999999998876
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=243.17 Aligned_cols=362 Identities=17% Similarity=0.202 Sum_probs=273.3
Q ss_pred EEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeec
Q 008939 144 YIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYN 223 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~ 223 (548)
+++......++||+++++. .+..+....+.|+++.-+|- -..+++|..+|+|.+++++. ++.+. ..+
T Consensus 175 IvvGs~~G~lql~Nvrt~K--~v~~f~~~~s~IT~ieqsPa---LDVVaiG~~~G~ViifNlK~-----dkil~-sFk-- 241 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGK--VVYTFQEFFSRITAIEQSPA---LDVVAIGLENGTVIIFNLKF-----DKILM-SFK-- 241 (910)
T ss_pred EEEeecCCcEEEEEeccCc--EEEEecccccceeEeccCCc---ceEEEEeccCceEEEEEccc-----CcEEE-EEE--
Confidence 3333444599999999954 99999988899999999998 67899999999999999987 33333 333
Q ss_pred cCCccc-CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc-cccceeeeecC-----CCCCCCCeeEe-
Q 008939 224 KDGSVN-NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI-KDQTQFSVAHP-----RYSKSNPIARW- 295 (548)
Q Consensus 224 ~~~~~~-~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~- 295 (548)
| .++|+.++|..||+-+|++|+..|.+.+||++............ .........++ ....++.++.|
T Consensus 242 -----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 242 -----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred -----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 3 48999999999999889999999999999998633222222111 10011111100 01122333322
Q ss_pred --------------eecCCCeEEEEEC-CCCCEEEEEECCCeEEEEeCCCC-------e---------------------
Q 008939 296 --------------HICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKE-------Q--------------------- 332 (548)
Q Consensus 296 --------------~~h~~~v~~~~~s-p~g~~l~s~~~dg~v~vwd~~~~-------~--------------------- 332 (548)
.+|..+..|+.|. .+|..+.+++.|++++.+++... +
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 3588899999998 58889999999998888765310 0
Q ss_pred EEEeee-------------------------------------ec------CCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 333 LICGGK-------------------------------------SY------YGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 333 ~~~~~~-------------------------------------~~------~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
.+..+. .+ ...+++++.+++|++.+.|...|.|.+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000000 01 24578899999999999999999999999
Q ss_pred CCCceeEEec---cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 370 MEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 370 ~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
+++|-....+ ..|..+|++++.+- -+ +.+++++.||.+++||+.+..++..++....+..+...
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~-------~n------~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDG-------TN------RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred cccCeeecccccCccccCceeEEEecC-------CC------ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence 9999888888 48999999999954 33 68999999999999999999988888776655555543
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc---C
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS---S 521 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~---~ 521 (548)
-.. ..+.+...+..+.++|..+.+.++.+.+|.+.|+++.|+||+ |++++.|++||+||+++...... +
T Consensus 544 r~s------~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 544 RVS------DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred ehh------hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 332 333556667889999999999999999999999999999996 99999999999999999875433 3
Q ss_pred CCCcEEEecCCCCceEeeecc
Q 008939 522 SSETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 522 ~~~~v~~~s~d~~~l~s~~~~ 542 (548)
....-+++||+|.+||+.+.+
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CcceeeEECCCCCEEEEEEec
Confidence 333445899999999999888
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=220.65 Aligned_cols=282 Identities=14% Similarity=0.166 Sum_probs=228.5
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.|+..+..|+..|.+..|+|+ +.+|++|+.|..|.+|++...... ... .++|+++|..+.|.+++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~---gs~~aSgG~Dr~I~LWnv~gdceN---~~~--------lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD---GSCFASGGSDRAIVLWNVYGDCEN---FWV--------LKGHSGAVMELHGMRDGS 103 (338)
T ss_pred chhhhcCCCcceEEEEEECCC---CCeEeecCCcceEEEEeccccccc---eee--------eccccceeEeeeeccCCC
Confidence 467777889999999999998 889999999999999997652111 110 115999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCe
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGY 322 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~ 322 (548)
.+++++.|.+|+.||.+++ +.++.+++|...|+.+.-+. ...++.+++.|++
T Consensus 104 -~i~S~gtDk~v~~wD~~tG--------------------------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 104 -HILSCGTDKTVRGWDAETG--------------------------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred -EEEEecCCceEEEEecccc--------------------------eeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 9999999999999999983 45777888989999988443 3457888999999
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+++||+++.+.+.++. ..-.++++.|..++..+.+|+-|+.|++||++.....+.+.||.+.|+.|..+| +|
T Consensus 157 ~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-------~g 228 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR-------YG 228 (338)
T ss_pred EEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc-------CC
Confidence 9999999988887765 345699999999999999999999999999999999999999999999999999 88
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..+.+-+.|.++++||++--..- ..++..++
T Consensus 229 ------s~llsnsMd~tvrvwd~rp~~p~-------------------------------------------~R~v~if~ 259 (338)
T KOG0265|consen 229 ------SFLLSNSMDNTVRVWDVRPFAPS-------------------------------------------QRCVKIFQ 259 (338)
T ss_pred ------CccccccccceEEEEEecccCCC-------------------------------------------CceEEEee
Confidence 79999999999999998742211 11122233
Q ss_pred cC----CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 483 VH----TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 483 ~h----~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
+| +.......|+|+ .+..++.|..+.+||..... ....+|...|. .|.|....|.++...-
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 32 234567789997 48899999999999977655 34557777776 7888888887776543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=222.93 Aligned_cols=308 Identities=17% Similarity=0.261 Sum_probs=229.1
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceee----ee-eeccCCcccCcceEEEEE
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVG----AH-HYNKDGSVNNSRCTSVTW 238 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~v~~l~~ 238 (548)
....+..|+..+.+.+|+|+ |.++++|+.|..|+|+|++.-+... -+.+.. .. ...+...-|.++|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~D---G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD---GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCC---CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 45566779999999999999 9999999999999999998422111 000000 00 001111238899999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|... +|++|+.|++|++||+.+.. ....+..+. ...+|.++.|+|.|.+|+.|.
T Consensus 181 HPre~-ILiS~srD~tvKlFDfsK~s-aKrA~K~~q-----------------------d~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 181 HPRET-ILISGSRDNTVKLFDFSKTS-AKRAFKVFQ-----------------------DTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred cchhh-eEEeccCCCeEEEEecccHH-HHHHHHHhh-----------------------ccceeeeEeecCCCceEEEec
Confidence 99998 99999999999999998621 111111111 126799999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCC-CCeEEEEEec
Q 008939 319 RDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHN-SWVSGVAFDS 393 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~-~~V~~v~~~p 393 (548)
.--.+++||+++-++...- ..|.+.|+++.+++.+++.++++.||.|++||--+++|+.++. .|. +.|.+..|..
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 9999999999998876542 4588999999999999999999999999999999999998875 465 5789999998
Q ss_pred CCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee-eecccCCCCceeec
Q 008939 394 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDV 472 (548)
Q Consensus 394 ~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~ 472 (548)
|| +++++.|.|..+++|.+.+++++..+..-...+...+.......+....+ ..-.....+.-||.
T Consensus 316 -------n~------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 316 -------NG------KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred -------CC------eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccc
Confidence 88 89999999999999999999999887653211111111111111111111 11122345677888
Q ss_pred CCCCceEEe-ecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 473 PKLSPLVAH-RVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 473 ~~~~~~~~~-~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
++...+..+ .+|.+.+..+.-+|. .++||+.|-.+|+|-..
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 776655444 379999999999996 49999999999999754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=243.27 Aligned_cols=275 Identities=17% Similarity=0.280 Sum_probs=229.8
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
-+.|+. .+.|++|. ...|++|+..+ ..+..... .+...|+++.|+++|. +|++|..+|.|.|
T Consensus 182 lldWss----~n~laVal-g~~vylW~~~s------~~v~~l~~------~~~~~vtSv~ws~~G~-~LavG~~~g~v~i 243 (484)
T KOG0305|consen 182 LLDWSS----ANVLAVAL-GQSVYLWSASS------GSVTELCS------FGEELVTSVKWSPDGS-HLAVGTSDGTVQI 243 (484)
T ss_pred Hhhccc----CCeEEEEe-cceEEEEecCC------CceEEeEe------cCCCceEEEEECCCCC-EEEEeecCCeEEE
Confidence 345553 33455554 44899999765 12222222 1378899999999999 9999999999999
Q ss_pred EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 258 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
||.... +.+..+.+ |...|.+++|. ...+.+|+.|+.|.++|++..+....
T Consensus 244 wD~~~~--------------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 244 WDVKEQ--------------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred Eehhhc--------------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 998762 33445555 78999999998 56899999999999999998776555
Q ss_pred -eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 337 -GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 337 -~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
+.+|...|..+.|++|+.+||+|+.|+.+.|||....+++..+..|...|.+++|+|+ .. .+||+|+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------q~------~lLAsGG 363 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------QS------GLLATGG 363 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC------cc------CceEEcC
Confidence 8899999999999999999999999999999999888899999999999999999994 22 3788876
Q ss_pred --CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee-eecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 416 --QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 416 --~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
.|++|++||..++..+..+....++..+.+++... ..+ ..|..+..+.+|+.++.+++..+.+|..+|..++
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k-----Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK-----ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC-----EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 59999999999999999999989999999987752 222 5667778999999999999999999999999999
Q ss_pred EeCCe--EEEEECCCeEEEEeCCCC
Q 008939 493 FTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 493 fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
++||+ |++|+.|.++++|++-..
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccCC
Confidence 99985 999999999999997653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=233.44 Aligned_cols=278 Identities=18% Similarity=0.279 Sum_probs=216.8
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
.-+|+..|..+.+-|.. ...+++.+..+.|+|||...+.... +........-...+|...-+.|+|++.....|++
T Consensus 120 ~i~h~gEVnRaRymPQn--p~iVAt~t~~~dv~Vfd~tk~~s~~--~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQN--PNIVATKTSSGDVYVFDYTKHPSKP--KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred eccCCccchhhhhCCCC--CcEEEecCCCCCEEEEEeccCCCcc--cccccCCCceEEEeecccccccccccccceeEee
Confidence 34577888888888873 4577888899999999988742111 1110111111122477778899999999889999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEe
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd 327 (548)
++.|+.|.+||+....... ....+...+++|+..|..++|++ +..+|++++.|+.+.|||
T Consensus 196 ~~~d~~i~lwdi~~~~~~~-------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKED-------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred ccCCCcEEEEeccccccCC-------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 9999999999998643211 11356788899999999999999 677899999999999999
Q ss_pred CC--CCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 328 YS--KEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 328 ~~--~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++ +.++.....+|.+.|+|++|+|-+ .+||+|+.|++|++||+++- ++++.+.+|+..|.+|.|+| +-.
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP-------h~e 329 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP-------HNE 329 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC-------CCC
Confidence 99 566677788999999999999955 57889999999999999984 57899999999999999999 431
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
..|++.+.|+.+.+||+..-...+.-+. ..+ ...++++.+.|
T Consensus 330 -----tvLASSg~D~rl~vWDls~ig~eq~~ed---------a~d------------------------gppEllF~HgG 371 (422)
T KOG0264|consen 330 -----TVLASSGTDRRLNVWDLSRIGEEQSPED---------AED------------------------GPPELLFIHGG 371 (422)
T ss_pred -----ceeEecccCCcEEEEeccccccccChhh---------hcc------------------------CCcceeEEecC
Confidence 6899999999999999976433222111 000 12346788899
Q ss_pred CCCCeeEEEEeCC---eEEEEECCCeEEEEeCCC
Q 008939 484 HTEPLSGLIFTQE---SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 484 h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~ 514 (548)
|...|..+.|+|. .|+++++|+.+.||.+..
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999997 399999999999999763
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=208.72 Aligned_cols=285 Identities=15% Similarity=0.234 Sum_probs=232.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...+-.++|+.+|..++.++-| ++.||+++......-.....|.+.+-.++|+|.. ..++++++.|..|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~--~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH--PDLFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC--CcceEEecCCceEEEE
Confidence 345678889999999999999998877 9999999976422223334567788889999885 4589999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++. ++...... .+..-.-+.|+|+++ +++++..|..|.+.|.++... ....+
T Consensus 93 d~r~-----~k~~~~i~--------~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~-~~~~~------------ 145 (313)
T KOG1407|consen 93 DIRS-----GKCTARIE--------TKGENINITWSPDGE-YIAVGNKDDRITFIDARTYKI-VNEEQ------------ 145 (313)
T ss_pred Eecc-----CcEEEEee--------ccCcceEEEEcCCCC-EEEEecCcccEEEEEecccce-eehhc------------
Confidence 9997 34333221 244456789999999 999999999999999986211 11110
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
....++.++|+.++.+++.....|.|.|..+..-+.+..+++|.....||.|+|+|++||+|+.|-
T Consensus 146 --------------~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 146 --------------FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred --------------ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 114577899998888888777789999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
.+.+||++.--++..+..++-+|+.|.|+- || ++|+++++|..|-|=++++|..+..++
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~-------dg------~~lASaSEDh~IDIA~vetGd~~~eI~-------- 270 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSH-------DG------RMLASASEDHFIDIAEVETGDRVWEIP-------- 270 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEecc-------Cc------ceeeccCccceEEeEecccCCeEEEee--------
Confidence 999999999999999999999999999998 99 899999999999999999998776554
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECC---------CeEEEEeC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE---------GHIKIWMR 512 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~D---------g~I~iW~~ 512 (548)
+.++...|+|+|.. |+-++.| |.++++-+
T Consensus 271 ----------------------------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 271 ----------------------------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ----------------------------------------ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 47788999999974 6766655 56666655
Q ss_pred C
Q 008939 513 P 513 (548)
Q Consensus 513 ~ 513 (548)
+
T Consensus 311 ~ 311 (313)
T KOG1407|consen 311 S 311 (313)
T ss_pred C
Confidence 4
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=245.20 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=238.7
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+...+++..|. +.++.++..+ +|++||...+. .+.. +..|...+.+++|... +..|++|+.|.++++||+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~--~i~~~l~GH~g~V~~l~~~~~---~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY--LILTRLVGHFGGVWGLAFPSG---GDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccce--EEEeeccCCCCCceeEEEecC---CCEEEEEecCCcEEeEec
Confidence 356667777777 4566676666 89999999854 6666 8999999999999874 668999999999999998
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.+ ........ .|...|.++...+. ++++|+.|.+|++|++..
T Consensus 279 ~s------g~C~~~l~------gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n----------------------- 320 (537)
T KOG0274|consen 279 ST------GECTHSLQ------GHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTN----------------------- 320 (537)
T ss_pred CC------CcEEEEec------CCCceEEEEEccCc---eEeeccCCceEEEEeccC-----------------------
Confidence 76 22222222 48899999988654 788899999999999985
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
...+..+.+|.++|+++..+ +.++++|+.|++|+|||+.+++++..+.+|..+|.++.+.+. +.+++|+.|+.|
T Consensus 321 ---~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 321 ---GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred ---cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence 34577778899999999997 779999999999999999999999999999999999988765 789999999999
Q ss_pred EEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 366 QVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
++||+++. +++..+.+|.+-|..+.+.. +.|++++.|+.|++||..+++++..++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~~---------------~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-------- 451 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLLRD---------------NFLVSSSADGTIKLWDAEEGECLRTLEG-------- 451 (537)
T ss_pred EeecCCchhhhhhhhcCCccccccccccc---------------ceeEeccccccEEEeecccCceeeeecc--------
Confidence 99999999 99999999999998888843 6899999999999999999999877655
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccc
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQ 519 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~ 519 (548)
.|...|+.+++..+.+++++.||.+++||++.+....
T Consensus 452 --------------------------------------~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 452 --------------------------------------RHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred --------------------------------------CCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 1567788888886779999999999999999877433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=210.31 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=229.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
++++|..+.|+-+|+ +.++++.|.+|++|+... ...++.+.+|...|..++.+
T Consensus 16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r--------------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR--------------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred cccceEEEEEccCCC-EEEEcCCCceEEeecccc--------------------------cceeeeecCCCceeeecccc
Confidence 789999999999999 999999999999999875 35678888999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc--eeEEeccCCCCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~--~~~~~~~~h~~~V 386 (548)
.|...|++++.|..+.+||+++|+.+..+++|.+.|+.++|+.+...+++|+-|..+++||.++. ++++.+......|
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999875 6888888888999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+|.... ..|++|+.||+++.||++.|+.....-. .+++++.|++++ +-...+.++..
T Consensus 149 ~Si~v~~---------------heIvaGS~DGtvRtydiR~G~l~sDy~g-~pit~vs~s~d~------nc~La~~l~st 206 (307)
T KOG0316|consen 149 SSIDVAE---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFG-HPITSVSFSKDG------NCSLASSLDST 206 (307)
T ss_pred eEEEecc---------------cEEEeeccCCcEEEEEeecceeehhhcC-CcceeEEecCCC------CEEEEeeccce
Confidence 9999964 5899999999999999999998766655 889999999987 33467888999
Q ss_pred CceeecCCCCceEEeecCCCCeeEEE--EeC--CeEEEEECCCeEEEEeCCCCCc-cccCCCCcE--E--EecCCCCceE
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLI--FTQ--ESVLTVCREGHIKIWMRPGVAE-SQSSSSETV--L--STSSKDKPLL 537 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~--fsp--d~l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v--~--~~s~d~~~l~ 537 (548)
+++.|..+++.+..+++|...=+.+. +.. ..+++|++||.|.+||+..... ....+...+ . +..|....++
T Consensus 207 lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 207 LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcccee
Confidence 99999999999999999987655554 333 2499999999999999876553 333444444 2 3447777777
Q ss_pred eeecccccc
Q 008939 538 SSKVVTSSY 546 (548)
Q Consensus 538 s~~~~g~~~ 546 (548)
++...+..+
T Consensus 287 ~A~~~~~~~ 295 (307)
T KOG0316|consen 287 TATGHGDLF 295 (307)
T ss_pred EecCCceec
Confidence 776655444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=212.16 Aligned_cols=306 Identities=14% Similarity=0.179 Sum_probs=243.7
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+..-+|..+++.+.|+.+|++|++++.| ...||=-..+. .+-+...|...|+|++.+.+ ...|++|+.|..+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~---s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWD---SKHLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCC---cceeeeccccceeEE
Confidence 4566899999999999999999999998 88999876644 89999999999999999998 668999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-----CCcEEEEEcCCCCCCCCCcccccccc
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-----DGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
||+++ ++.+... . ...+|..+.|++++. +++.+.. .+.|.++|++.....
T Consensus 79 WDv~t-----Gk~la~~-k-------~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~----------- 133 (327)
T KOG0643|consen 79 WDVET-----GKQLATW-K-------TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSD----------- 133 (327)
T ss_pred EEcCC-----CcEEEEe-e-------cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhh-----------
Confidence 99998 4444332 2 478899999999998 5555433 367999999853210
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
.....|+..+..+...++.+-|.|-+++|++|..||.|.+||++++ +.+...+.|...|+.+++++|..++
T Consensus 134 --------~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 134 --------IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred --------hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceE
Confidence 1224667777788899999999999999999999999999999997 4566668899999999999999999
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++++.|.+-++||+++-++++++. -+.+|++.+++| .-. ..++-|+++.. |+.+-.-
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP-------~~d-----~VilgGGqeA~----dVTTT~~------ 262 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISP-------LLD-----HVILGGGQEAM----DVTTTST------ 262 (327)
T ss_pred EecccCccceeeeccceeeEEEee-ecccccceeccc-------ccc-----eEEecCCceee----eeeeecc------
Confidence 999999999999999999999988 778999999998 320 34555554421 2111000
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.| ....+++++...+.+..+++|-++|++|+|+|++ .++|++||.||+..+..
T Consensus 263 ----------------------r~G--KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 263 ----------------------RAG--KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ----------------------ccc--chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 001 0122445555556777888999999999999996 89999999999987654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=249.88 Aligned_cols=312 Identities=16% Similarity=0.205 Sum_probs=242.3
Q ss_pred CCCCceeEEeCCCCCEEEEec--CC-eEEEEEccCCC----------CCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV--GD-AIFISDLNSQD----------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~--~d-~v~vwd~~~~~----------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
+..+|+.+..+|+|..+++++ .| .++||+.+.-- .+.+..+.-|...+.|+.|+|+ |.+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d---G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD---GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC---CCeEeecc
Confidence 455789999999999999988 56 77799865311 2456677778899999999999 88999999
Q ss_pred cCCcEEEEEeeec-----ccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 196 NSGDVYSVSLRQQ-----LQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 196 ~dg~I~iwdl~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|+.|.||+.... ... .+.+.+..-+...-...|...|.+++|+|++. +|++++.|++|.+|+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t------- 160 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT------- 160 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccc-------
Confidence 9999999998730 000 00000000000011224999999999999999 999999999999999987
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC------Cc
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------GA 343 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~ 343 (548)
...+.++++|++.|..+.|.|-|+|||+-+.|++|+||++.+..+.+.+..+. ..
T Consensus 161 -------------------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 161 -------------------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred -------------------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 35688899999999999999999999999999999999987766666655443 35
Q ss_pred eEEEEEccCCCEEEEEeC----CCeEEEEECCCceeEEeccCCCCCeEEEEEecC-CCCCCCCCCccc---eeEEEEEEe
Q 008939 344 LLCCAWSMDGKYILTGGE----DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY-WSQPNSDGTAET---VMYRFGSVG 415 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~~~dg~~~~---~~~~l~s~~ 415 (548)
++.+.|||||++|++... -..+.|.+-.+.+.-..|-||.+++.+++|+|. +..++.+|.... ....+++|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 788999999999998542 347899988888888899999999999999997 344444442211 123788999
Q ss_pred CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC
Q 008939 416 QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 495 (548)
Q Consensus 416 ~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp 495 (548)
+|++|.||.....+++..+.. .....|.+|.|+|
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~----------------------------------------------lf~~SI~DmsWsp 335 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHN----------------------------------------------LFNKSIVDMSWSP 335 (942)
T ss_pred CCccEEEEecCCCCchhhhhh----------------------------------------------hhcCceeeeeEcC
Confidence 999999999866555433221 2357899999999
Q ss_pred Ce--EEEEECCCeEEEEeCCCCC
Q 008939 496 ES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 496 d~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|+ |+.+|.||+|.+..+...+
T Consensus 336 dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 336 DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCeEEEEecCCeEEEEEcchHH
Confidence 96 9999999999999987654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=231.15 Aligned_cols=306 Identities=14% Similarity=0.185 Sum_probs=225.1
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.+-+.+|...|..++++|.|.++++++-| .|++||++.... +..+.+. .....+..+.|++. +..|++.+..-
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T---g~~iLvvsg~a 236 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT---GDQILVVSGSA 236 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC---CCeEEEEecCc
Confidence 56788899999999999999999999999 999999987441 1122221 12347899999998 78899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+.+|+|-.....-.--+--+.+.-...-++|...++|.+|+|.....|++++.||++++||++........+.+...
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~--- 313 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA--- 313 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC---
Confidence 99999966421100000000011111234589999999999999889999999999999999863322222211110
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe---EEEeeeecCC--ceEEEEEccCC
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ---LICGGKSYYG--ALLCCAWSMDG 353 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~--~v~~l~~spdg 353 (548)
.+..-+++.++|++||++||+|..||.|.+|+..... ..+.-.+|.. .|+||.||+||
T Consensus 314 -----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 314 -----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred -----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 1123578899999999999999999999999985432 2334467776 89999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEeccCC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEE
Q 008939 354 KYILTGGEDDLVQVWSMEDR-KVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWD 424 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd 424 (548)
++|++-+.|+.+++||+++. +++....+- .-+-+.++|+| |. .+|++|.. .+.+.+||
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-------d~------kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-------DD------KLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-------Cc------eEEEecccccCCCCCceEEEEe
Confidence 99999999999999999985 455555443 23557889999 87 78888753 45677777
Q ss_pred CCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEE
Q 008939 425 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVC 502 (548)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s 502 (548)
..+-+.+..+.. ....|..+.|+|. .|+.++
T Consensus 444 ~~t~d~v~ki~i-----------------------------------------------~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 444 RMTLDTVYKIDI-----------------------------------------------STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccceeeEEEecC-----------------------------------------------CCceEEEEeecchhhheeeec
Confidence 766555544432 3567889999995 599999
Q ss_pred CCCeEEEEe
Q 008939 503 REGHIKIWM 511 (548)
Q Consensus 503 ~Dg~I~iW~ 511 (548)
.||.++++=
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 999999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=213.90 Aligned_cols=288 Identities=20% Similarity=0.242 Sum_probs=242.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
....|...+..++|+|-.++|-.|++++.||.-.+-+=++ +. .+. ...+|++.|.......+.. ..+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-----gd-wig------tfeghkgavw~~~l~~na~-~aa 75 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-----GD-WIG------TFEGHKGAVWSATLNKNAT-RAA 75 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC-----CC-cEE------eeeccCcceeeeecCchhh-hhh
Confidence 4556777889999999888899999999998865443322 22 222 2235999999999988876 788
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
++..|=+-+|||.-+ +.....+ .|+.-|..++|+.|.++|++|+.+..+||||
T Consensus 76 saaadftakvw~a~t-gdelhsf--------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVT-GDELHSF--------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred hhcccchhhhhhhhh-hhhhhhh--------------------------hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 899999999999876 3222222 2456799999999999999999999999999
Q ss_pred CCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 328 YSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 328 ~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
++..+ ....+.+|.+.|..+.|....+.|++...|+.||+||.+++..++.++ -..+|+++.+++ ||
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-------dG---- 196 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-------DG---- 196 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-------CC----
Confidence 98654 456788999999999999999999999999999999999999999998 778899999999 99
Q ss_pred eeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe-ecCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH-RVHT 485 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~-~~h~ 485 (548)
.+++....+.|++||..+-.++..++.+..+.+....|.. ..+..|..+..++.+|..+.+.+..+ ++|-
T Consensus 197 ---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 ---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred ---CEEEEecCceeEEeccccccceeeccCccccccccccCCC------ceEEecCcceEEEEEeccCCceeeecccCCC
Confidence 6778888899999999999999999887778877777765 55678888999999999999999996 8999
Q ss_pred CCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 486 EPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 486 ~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++|.+|.|+||+ .++|++||+||||.....+
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999986 7899999999999975544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=203.67 Aligned_cols=280 Identities=17% Similarity=0.221 Sum_probs=224.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc--CCcEEEEEe
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN--SGDVYSVSL 205 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~--dg~I~iwdl 205 (548)
....|.++.|+.+|.++++++.| .++|||..++. .++.+.-.+-.+..+.|... .+.++.++. |.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--~~~ti~skkyG~~~~~Fth~---~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--QVKTINSKKYGVDLACFTHH---SNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--eeeEeecccccccEEEEecC---CceEEEccCCCCCceEEEEe
Confidence 35678899999999999997776 99999999966 88888888778888888877 556777776 778999998
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.. .+.+.. ..+|...|+.|+.+|-++ .|++++.|++|++||++...
T Consensus 88 ~d------NkylRY------F~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~--------------------- 133 (311)
T KOG1446|consen 88 HD------NKYLRY------FPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK--------------------- 133 (311)
T ss_pred ec------CceEEE------cCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC---------------------
Confidence 86 333332 336999999999999998 99999999999999999521
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eEEEee--e-ecCCceEEEEEccCCCEEEEEe
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGG--K-SYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~~--~-~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+.. ..-..++|+|+|-++|++.....|++||++.- .+..++ . ........+.|||||++|+.+.
T Consensus 134 -----cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 134 -----CQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred -----CceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 1111111 23345789999999999988889999999853 222222 2 3456789999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCe---EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWV---SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V---~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
..+.+++.|--+|..+..+.++...- -...|.| || +.+++++.||+|.+|+++++..+..++.
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-------ds------~Fvl~gs~dg~i~vw~~~tg~~v~~~~~- 272 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-------DS------KFVLSGSDDGTIHVWNLETGKKVAVLRG- 272 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-------CC------cEEEEecCCCcEEEEEcCCCcEeeEecC-
Confidence 99999999999999988888765432 4678899 99 7999999999999999999988766554
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~ 513 (548)
.+..++.++.|.|.+..-++.|..+-+|-..
T Consensus 273 ---------------------------------------------~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 273 ---------------------------------------------PNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ---------------------------------------------CCCCCccccccCCceeeeeecCceEEEEecc
Confidence 2577889999999987777788899999654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=234.06 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=172.4
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc--ccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ--DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
.+..|...|.+++|+|. ++.+|++|+.||.|++||+..... .....+. ....|...|.+++|+|++.++
T Consensus 70 ~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-------~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-------HLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred eEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceE-------EecCCCCcEEEEEeCcCCCCE
Confidence 35678889999999993 167899999999999999975210 0001111 112488999999999987559
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++++.|+.|+|||+... ..+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 141 LaSgs~DgtVrIWDl~tg--------------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 141 LASAGADMVVNVWDVERG--------------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EEEEeCCCEEEEEECCCC--------------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 999999999999999862 345567778899999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCc-eEEEEEccCCCEEEEEe----CCCeEEEEECCCce-eEEeccCC-CCCeEEEEEecCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGA-LLCCAWSMDGKYILTGG----EDDLVQVWSMEDRK-VVAWGEGH-NSWVSGVAFDSYWSQP 398 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~sgs----~dg~I~vwd~~~~~-~~~~~~~h-~~~V~~v~~~p~~~~~ 398 (548)
||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++.. ++.....+ ...+....|++
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~----- 269 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE----- 269 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC-----
Confidence 999999999888888764 45678999888777654 47899999998754 44444333 34566677888
Q ss_pred CCCCCccceeEEEEEEe-CCCeEEEEECCCCeEEeeee
Q 008939 399 NSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~ 435 (548)
|+ .+|++++ .|+.|++||+..++.+....
T Consensus 270 --d~------~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 270 --DT------NLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred --CC------CEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 88 6777777 59999999999988766543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=221.68 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=234.6
Q ss_pred eEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEecCC
Q 008939 166 IKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 166 i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p~~ 242 (548)
.+.+.| .++.+-|..|+|+ +++|++|+.||-|.+|+.-+.. +.....+.. ...-+..+|.|+.|+.|.
T Consensus 205 ~r~IKFg~KSh~EcA~FSPD---gqyLvsgSvDGFiEVWny~~GK------lrKDLkYQAqd~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPD---GQYLVSGSVDGFIEVWNYTTGK------LRKDLKYQAQDNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hhheecccccchhheeeCCC---CceEeeccccceeeeehhccch------hhhhhhhhhhcceeecccceEEEeecccH
Confidence 445555 4568899999999 9999999999999999987621 111111111 112368899999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+ .|++|+.||.|++|.+.++ ..+++|+ .|...|+|+.|+.|+..+++++.|.
T Consensus 276 E-MlAsGsqDGkIKvWri~tG--------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~ 328 (508)
T KOG0275|consen 276 E-MLASGSQDGKIKVWRIETG--------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQ 328 (508)
T ss_pred H-HhhccCcCCcEEEEEEecc--------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccc
Confidence 9 9999999999999999973 2344444 7889999999999999999999999
Q ss_pred eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~ 399 (548)
++|+.-+..|+++..+++|...|+...|.+||..+++++.||+|++|+..+.+++.+++. .+.+|..+..-|
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P------ 402 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP------ 402 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC------
Confidence 999999999999999999999999999999999999999999999999999999998873 556888888877
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC-CCCC---ceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LGGS---PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
... ..++.|...++|.|-++. |+.++.+..+. ..+. .+.++.+ ..+..-..|..++.+.+..+
T Consensus 403 -Knp-----eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG------ewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 403 -KNP-----EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG------EWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred -CCC-----ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC------cEEEEEccCcEEEEEEeecC
Confidence 221 478889899999999985 67777765432 2222 2334443 23334445677788888888
Q ss_pred CceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..-..+..|+..|-.++-+|. .|++-++||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 889999999999999999996 489999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=229.66 Aligned_cols=336 Identities=15% Similarity=0.208 Sum_probs=253.0
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecC-CCC-------CCceEEEEEcCCcEEEE
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQ-DAK-------DGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p-~~~-------~~~~l~~g~~dg~I~iw 203 (548)
..+.|++....+.+-.+| .++|||++...+ .....+-+|...|+.+.--| +-. -...+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 468999998888887777 999999997542 34566677887777775555 111 12358999999999999
Q ss_pred Eeeeccccc--ccceeee-----------e---------eeccCC---cccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 204 SLRQQLQDV--GKKLVGA-----------H---------HYNKDG---SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 204 dl~~~~~~~--~~~~~~~-----------~---------~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
|++.-.... .+.+... . .|.+.. ......+.+++.+|+++ .|++|..-|+++||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEE
Confidence 997611100 0000000 0 011100 01456899999999999 99999999999999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCC-CeEE
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSK-EQLI 334 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~dg~v~vwd~~~-~~~~ 334 (548)
++.. .........|+..|.|+.|+. ..++||+++.|..|.|||... ..++
T Consensus 487 ~Lq~--------------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 487 DLQE--------------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred Eehh--------------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9975 234556678999999999985 357899999999999999964 3567
Q ss_pred EeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCC-----CCCeEEEEEecCCCCCCCCCCccce
Q 008939 335 CGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.++.+|...|+++.|.-.| ..+++++.|..|.+--.+.......+..| ...++.|+..| ..
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-------~~----- 608 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-------TS----- 608 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-------Cc-----
Confidence 8899999999999998877 67899999988765433321111122212 35678999988 65
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC-CC---ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG-GS---PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+++++++|..|+|||+..++....++..... +. +...|.+ .++.....+..+.++|...++++..+.|
T Consensus 609 -k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg------iY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 609 -KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG------IYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred -ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc------cEEEEeecCCceEEEEeccchhhhhhcC
Confidence 69999999999999999999999999864322 22 2223333 4567777889999999999999999999
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
|.+.|+.|.|.+|+ |++++.||+|.||.++..
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999996 999999999999998764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-25 Score=192.14 Aligned_cols=298 Identities=14% Similarity=0.241 Sum_probs=229.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC------CC---CCC-e---EEEecCCCCceEEEecCCCCCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS------QD---KDP-I---KSIHFSNSNPVCHAFDQDAKDG 188 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~------~~---~~~-i---~~~~~~~~~~~~~~~~p~~~~~ 188 (548)
.+..-.....|..++|.|.|.+.+++++. +++|..... .+ +.| . +.-+.|...+.|.+|+|. |
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~---g 101 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC---G 101 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc---c
Confidence 44455567788999999999999998876 888765432 21 112 1 222347789999999999 8
Q ss_pred ceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEEEEEecCCC---cEEEEEe-CCCcEEEEEcCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD---GAFVVGH-ADGNLYVYEKSKD 263 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~s~~-~dg~v~vwd~~~~ 263 (548)
.+|++|+.|..|++.-+.....+. +..+. ...|.+.|.+++|..+.+ .+|++++ .|.+|++-|-..
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~- 172 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR- 172 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCccee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-
Confidence 899999999999988766521111 11111 123889999999975432 2666654 455666655543
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--c-
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--Y- 340 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~- 340 (548)
..+.+.+.+|++-|.++ ++=++-++++|+.|.+||+||++-..++.++.. |
T Consensus 173 -------------------------g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 173 -------------------------GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred -------------------------CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC
Confidence 35678888999999887 344678999999999999999998877766532 2
Q ss_pred ----CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 341 ----YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 341 ----~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
...|.+++..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+| .. +++++++.
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-------~a------~yllt~sy 293 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-------GA------HYLLTCSY 293 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-------Cc------eEEEEecc
Confidence 25789999999999999999999999999999999999999999999999999 66 89999999
Q ss_pred CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC
Q 008939 417 DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd 496 (548)
|..|++-|+...- ....+++....|.+.+..+.|+|.
T Consensus 294 d~~ikltdlqgdl-------------------------------------------a~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 294 DMKIKLTDLQGDL-------------------------------------------AHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred cceEEEeecccch-------------------------------------------hhcCceEEEEeccCceEEEEecCc
Confidence 9999999986421 122355566679999999999996
Q ss_pred --eEEEEECCCeEEEEeCCC
Q 008939 497 --SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 497 --~l~t~s~Dg~I~iW~~~~ 514 (548)
.+++.+.|.++.+|.+++
T Consensus 331 d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALNG 350 (350)
T ss_pred cceeeeccCcceEEEeccCC
Confidence 389999999999998763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=222.91 Aligned_cols=271 Identities=17% Similarity=0.214 Sum_probs=216.3
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+.|..++|+|..+. .+++.++ -.+.||+... ....+.+. -.+..|+++.|..||. +|++|..
T Consensus 25 e~~~vssl~fsp~~P~--d~aVt~S-~rvqly~~~~--~~~~k~~s----------rFk~~v~s~~fR~DG~-LlaaGD~ 88 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPY--DFAVTSS-VRVQLYSSVT--RSVRKTFS----------RFKDVVYSVDFRSDGR-LLAAGDE 88 (487)
T ss_pred ccCcceeEecCCCCCC--ceEEecc-cEEEEEecch--hhhhhhHH----------hhccceeEEEeecCCe-EEEccCC
Confidence 3467899999997542 3444443 4688888765 12222221 1477899999999999 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|.|+|||+.+ ...++.++.|+.+|+.+.|+| ++..|++|+.|+.+++||+.+
T Consensus 89 sG~V~vfD~k~--------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 89 SGHVKVFDMKS--------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred cCcEEEecccc--------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 99999999654 345677889999999999999 567888999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
......+.+|+++|.|.+|+|-.. .+++|+.||.|++||++.. ..+.++. |..+|..+.|-| .|
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lp-------sg------ 208 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALP-------SG------ 208 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcC-------CC------
Confidence 988778999999999999999654 7899999999999999987 6677776 999999999999 87
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
.+|++++. ..|++||+.+|..+.. .+..|...|
T Consensus 209 s~iasAgG-n~vkVWDl~~G~qll~----------------------------------------------~~~~H~KtV 241 (487)
T KOG0310|consen 209 SLIASAGG-NSVKVWDLTTGGQLLT----------------------------------------------SMFNHNKTV 241 (487)
T ss_pred CEEEEcCC-CeEEEEEecCCceehh----------------------------------------------hhhcccceE
Confidence 57888774 6899999997664422 122488999
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+|+.+..+ .|++++-|+.++++|+..-+. .-.....+|+ +++||++.++.|..+|-+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 99999985 599999999999999766553 3345667777 788999999999877543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=221.26 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=228.2
Q ss_pred CCCCceeEEeCCCCCE-EEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTY-IIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~-l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
-.++|..++|+|...+ +++.+.-.+.||+..+.. .++.+.--...+.++.|..| |.+|++|...|.|++||+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~--~~k~~srFk~~v~s~~fR~D---G~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS--VRKTFSRFKDVVYSVDFRSD---GRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh--hhhhHHhhccceeEEEeecC---CeEEEccCCcCcEEEecccc
Confidence 3567889999997665 455666699999988733 66655545668999999998 89999999999999999654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+.++... ..|..+|..+.|+|++...|++|+.|+.+++||+.+.
T Consensus 100 ------r~iLR~~------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------------------------ 143 (487)
T KOG0310|consen 100 ------RVILRQL------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------------------------ 143 (487)
T ss_pred ------HHHHHHH------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------------------------
Confidence 2221111 2489999999999999889999999999999999862
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
..+..+.+|+..|.|.+|+| ++.++++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|.++++++. ..|
T Consensus 144 --~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 144 --YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred --EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 12457788999999999999 5678999999999999999877 6666665 8899999999999999999864 599
Q ss_pred EEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 366 QVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
+|||+-+| +.+..+..|...|+|+++.. ++ ..|++++.|+.+++||+.+-+.+..+..
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s-------~~------~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-------- 278 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLAS-------DS------TRLLSGSLDRHVKVFDTTNYKVVHSWKY-------- 278 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeec-------CC------ceEeecccccceEEEEccceEEEEeeec--------
Confidence 99999965 45555556999999999987 77 7999999999999999887776665544
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
.++|.+++.+|+ .++.|-.||.+.+=++..
T Consensus 279 ----------------------------------------~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 279 ----------------------------------------PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ----------------------------------------ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 578899999995 488888999888775443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=222.43 Aligned_cols=314 Identities=14% Similarity=0.207 Sum_probs=249.3
Q ss_pred ccCCCCceeeecCCCCCCCcccCCCCcccccccCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEEEec-
Q 008939 94 LGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKSIHF- 171 (548)
Q Consensus 94 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~~~~- 171 (548)
..+++-.+++.|.+.+-.+ ..-....-.+..-.|++-|..++.+...+.+.+++...|+|||+.... +.|+..+..
T Consensus 385 ~~~dg~~qPvpfP~dal~g--~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl 462 (705)
T KOG0639|consen 385 VSADGQMQPVPFPPDALVG--PGIPRHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCL 462 (705)
T ss_pred ecCCCcccCCCCCchhhcC--CCCCchHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccccccc
Confidence 3344556667776654322 222233335677789999999999999999988888899999998643 456766654
Q ss_pred -CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 172 -SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 172 -~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
..+.+..+...|+ ++.|++|+.-.+|.||||..........+ ....-.++.++.+||.+ +.++++
T Consensus 463 ~rdnyiRSckL~pd---grtLivGGeastlsiWDLAapTprikael----------tssapaCyALa~spDak-vcFscc 528 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPD---GRTLIVGGEASTLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDAK-VCFSCC 528 (705)
T ss_pred CcccceeeeEecCC---CceEEeccccceeeeeeccCCCcchhhhc----------CCcchhhhhhhcCCccc-eeeeec
Confidence 3457888889998 88899999999999999987321111111 11345788999999999 899999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.||+|.|||+.. ...++.|++|+..+.|+.+++||..|-+|+-|.+||.||+++
T Consensus 529 sdGnI~vwDLhn--------------------------q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 529 SDGNIAVWDLHN--------------------------QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred cCCcEEEEEccc--------------------------ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 999999999986 356888999999999999999999999999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
++.+.... ....|.++.++|.+.+|++|-+++.+.|......+. +.+.-|++.|.++.|.+ .| ++
T Consensus 583 grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheScVLSlKFa~-------cG------kw 647 (705)
T KOG0639|consen 583 GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAY-------CG------KW 647 (705)
T ss_pred hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-eeecccccEEEEEEecc-------cC------ce
Confidence 88765533 457899999999999999999999999988765443 45556999999999999 88 89
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
+++.+.|..+..|...-|..+...+. ..+|.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqskE------------------------------------------------~SsVls 679 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSKE------------------------------------------------SSSVLS 679 (705)
T ss_pred eeecCchhhhhhccCccccceeeccc------------------------------------------------cCccee
Confidence 99999999999999887776544332 456777
Q ss_pred EEEeCC--eEEEEECCCeEEEEeC
Q 008939 491 LIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 491 l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
...+-| +|+||+.|....+|.+
T Consensus 680 CDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeccCceEEEecCCCcceEEEEE
Confidence 777664 6999999999888875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=212.29 Aligned_cols=264 Identities=17% Similarity=0.237 Sum_probs=219.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|.+.|.++... +. .+++|+.||.+++||..- +.+....+|.++|.+++|.
T Consensus 104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G---------------------------k~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG---------------------------KSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred chhhhhhhccc--Cc-eEEEeecCCeeEEEecCC---------------------------ceEEEEecCCcceeeeEEE
Confidence 78889998887 34 899999999999999863 5577788999999988885
Q ss_pred C---CCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC----------
Q 008939 309 T---DGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---------- 371 (548)
Q Consensus 309 p---~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---------- 371 (548)
- ....|++++.|.++++|-++.++. +..-++|...|.++...++|..+++|+.|.+|.||+..
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 4 234699999999999999987754 23345899999999999999999999999999999932
Q ss_pred ---------------CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 372 ---------------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 372 ---------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++.++..+.||..+|.+|.|++ .+ .+.+++.|.+|+.||+.++.+...+..
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-------~~-------v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-------AT-------VIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-------CC-------ceEeecccceEEEEEeecccceeeeec
Confidence 1236678899999999999986 44 899999999999999999999988877
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC---ceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEE
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS---PLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIW 510 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~---~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW 510 (548)
.....++...+.. ..+..|+.+..+++||.++.. +...+.+|..-|.++.|+|. .|++++.|+++++|
T Consensus 300 ~ksl~~i~~~~~~------~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 300 NKSLNCISYSPLS------KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred CcceeEeeccccc------ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 5555555555543 567889999999999988764 56788899999999999995 49999999999999
Q ss_pred eCCCCCcc---ccCCCCcEEEec-CCCCceEeeecc
Q 008939 511 MRPGVAES---QSSSSETVLSTS-SKDKPLLSSKVV 542 (548)
Q Consensus 511 ~~~~~~~~---~~~~~~~v~~~s-~d~~~l~s~~~~ 542 (548)
|++....+ ...|.+.|+++- .++..|++|+..
T Consensus 374 DvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred EeccCCCcceeeccCCceEEEEeccCCceEEeccCc
Confidence 99887633 447888998665 777889999776
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=230.25 Aligned_cols=210 Identities=17% Similarity=0.272 Sum_probs=167.9
Q ss_pred ccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 228 VNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 228 ~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.|.+.|++++|+| ++. +|++|+.|++|++||+...+... ....++..+.+|...|.+++
T Consensus 73 GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~-------------------~~~~~l~~L~gH~~~V~~l~ 132 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQ-------------------NISDPIVHLQGHTKKVGIVS 132 (493)
T ss_pred CCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCcccc-------------------ccCcceEEecCCCCcEEEEE
Confidence 4899999999999 566 99999999999999997532110 01246778889999999999
Q ss_pred ECCCC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 307 FSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 307 ~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|+|++ ++|++++.|+.|+|||+++++.+..+..|...|.+++|+|++.+|++++.|+.|+|||+++++.+..+.+|...
T Consensus 133 f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred eCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99975 79999999999999999999999899999999999999999999999999999999999999999999989765
Q ss_pred e-EEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 386 V-SGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 386 V-~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
+ ..+.|.+ ++ ..|++++ .|+.|++||+++.......
T Consensus 213 ~~~~~~w~~-------~~------~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~-------------------------- 253 (493)
T PTZ00421 213 KSQRCLWAK-------RK------DLIITLGCSKSQQRQIMLWDTRKMASPYST-------------------------- 253 (493)
T ss_pred cceEEEEcC-------CC------CeEEEEecCCCCCCeEEEEeCCCCCCceeE--------------------------
Confidence 4 4677887 65 3565554 4899999999864321110
Q ss_pred cccCCCCceeecCCCCceEEeec-CCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQES--VLTVC-REGHIKIWMRPGVA 516 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~~~ 516 (548)
... +...+....|+++. |++++ .|+.|++||+..+.
T Consensus 254 --------------------~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 254 --------------------VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred --------------------eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 011 12345556788864 66666 69999999998765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=225.77 Aligned_cols=274 Identities=14% Similarity=0.240 Sum_probs=216.2
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
..|...|+++.|.|-..++|++++.|+.|+||++..+ ...++.+.+|..+|..++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-------------------------~~~lrtf~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-------------------------RRCLRTFKGHRKPVRDAS 265 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------------------cceehhhhcchhhhhhhh
Confidence 4599999999999944449999999999999999763 456788889999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|+++|..+++++-|+.|++||+++|+++..+.. ...+.|+.|+||+ +.+++|+.|+.|+.||+++++.++.+..|-+.
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 999999999999999999999999999988863 4678999999999 78999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCC--ceecCCCCccccCCeeeeccc
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS--PTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~g~~ 463 (548)
|..+.|-+ +| +++++.+.|+.++||+.+..-.+..+........ +...|.+ ..+..-++
T Consensus 345 i~~i~F~~-------~g------~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~------~~~~aQs~ 405 (503)
T KOG0282|consen 345 ILDITFVD-------EG------RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG------KWFAAQSM 405 (503)
T ss_pred eeeeEEcc-------CC------ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC------Ceehhhcc
Confidence 99999999 88 8999999999999999998877665544333332 2333333 22333344
Q ss_pred CCCCceeecC---CCCceEEeecCCC--CeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCC
Q 008939 464 QPAPSMRDVP---KLSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSK 532 (548)
Q Consensus 464 ~~~~~~~d~~---~~~~~~~~~~h~~--~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d 532 (548)
+..+.++.+. .......+++|.. --..+.|+||+ |++|..||.+.+||..+.+.. ...|...+. .+.|.
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 4444454432 2234456677744 34568899985 999999999999998876632 334545554 55665
Q ss_pred C-CceEeeeccccc
Q 008939 533 D-KPLLSSKVVTSS 545 (548)
Q Consensus 533 ~-~~l~s~~~~g~~ 545 (548)
. ..+|+++..|.+
T Consensus 486 e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 486 EPSKVATCGWDGLI 499 (503)
T ss_pred CcceeEecccCcee
Confidence 5 358888887765
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-27 Score=234.53 Aligned_cols=288 Identities=16% Similarity=0.293 Sum_probs=220.8
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC-----CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN-----SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~-----~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++..++-..|+.++...+.||.++...+.+-..+.+.. -.+..|.|... +.++|++++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~--~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL--YSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccc--hhhhheeecCCCcEEEEecCc
Confidence 34566677778888877778999998865533333333211 13456677744 367999999999999999986
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.... +.+.. ..-|...++++.|++...++|++|+.||.|++||++...
T Consensus 120 ~~rn--k~l~~-------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----------------------- 167 (839)
T KOG0269|consen 120 SIRN--KLLTV-------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----------------------- 167 (839)
T ss_pred cccc--hhhhH-------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----------------------
Confidence 3211 11111 113899999999999999999999999999999998632
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
....+......|..+.|+| .+.+++++...|.|++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|
T Consensus 168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 1222333447899999999 6789999999999999999854 4567788999999999999999999999999999
Q ss_pred EEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 366 QVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 366 ~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
+|||+.+.+ .+.++. -..+|..|+|-| +.. +.|++++ .|..|+|||++...
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP-------~~~-----~hLAtcsmv~dtsV~VWDvrRPY------------ 299 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRP-------ARS-----YHLATCSMVVDTSVHVWDVRRPY------------ 299 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeecc-------Ccc-----chhhhhhccccceEEEEeecccc------------
Confidence 999998754 333443 457899999999 542 6788887 48999999998643
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC---CeEEEEECCCeEEEEeCCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~ 516 (548)
-|..++..|...++.++|.. +.+.+++.||+|..-.+....
T Consensus 300 ----------------------------------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 300 ----------------------------------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ----------------------------------ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 24556678999999999976 359999999999877766544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=233.46 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=209.5
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc----------------cccccc--------------
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP----------------VIKDQT-------------- 277 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------------~~~~~~-------------- 277 (548)
.|++.|.++.|++||+ +||+|+.|+.|+||.+........... +.....
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 5999999999999999 999999999999999865111000000 000000
Q ss_pred --eeeee--cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-C
Q 008939 278 --QFSVA--HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-D 352 (548)
Q Consensus 278 --~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-d 352 (548)
.-... ..-.....|++.+.+|.+.|..+.||.+ ++|++++.|.+||+|++...++++.+. |.+.|+|++|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 00000 0011347899999999999999999986 489999999999999999999999887 999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.+++++|+-|+.|+||++.+.+.+.+...+ .-|++++|.| || ...+.|+.+|.+++|+...-+...
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-------dG------k~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-------DG------KGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-------CC------ceEEEEEeccEEEEEEccCCeEEE
Confidence 789999999999999999999888877744 8899999999 99 789999999999999998777665
Q ss_pred eeecC---------CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC--CeeEEEEeCCe--EE
Q 008939 433 PLRRG---------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VL 499 (548)
Q Consensus 433 ~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~fspd~--l~ 499 (548)
...-. ..++.+.|.+.... .+.+.+-|..++++|.+...++..++++.. .-....|+.|+ |+
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~-----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPD-----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCC-----eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 54321 23555666555422 567788899999999999999999987644 33556788874 99
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
++++|..|+||+++.
T Consensus 563 s~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDS 577 (712)
T ss_pred EeecCceEEEEeCCC
Confidence 999999999999744
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=233.13 Aligned_cols=247 Identities=17% Similarity=0.248 Sum_probs=206.3
Q ss_pred ccC-CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC--------------------------------CC--------
Q 008939 125 GAS-SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS--------------------------------QD-------- 162 (548)
Q Consensus 125 ~~~-~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~--------------------------------~~-------- 162 (548)
... .|.++|.++.|++||+|||+++.| .|+||.+.. ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 444 899999999999999999999999 999998765 00
Q ss_pred ------------------CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc
Q 008939 163 ------------------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 163 ------------------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
.+|++.+..|...|+.+.|+.+ ++|++++.|.+|++|++.. +.++..+.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn----~fLLSSSMDKTVRLWh~~~------~~CL~~F~--- 407 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN----NFLLSSSMDKTVRLWHPGR------KECLKVFS--- 407 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC----CeeEeccccccEEeecCCC------cceeeEEe---
Confidence 3566777778889999999974 5899999999999999886 45555554
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
|.+.|+||+|+|-++++|++|+-||.|+||++.. +.+..|.....-|++
T Consensus 408 ----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---------------------------~~Vv~W~Dl~~lITA 456 (712)
T KOG0283|consen 408 ----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD---------------------------KKVVDWNDLRDLITA 456 (712)
T ss_pred ----cCCeeEEEEecccCCCcEeecccccceEEeecCc---------------------------CeeEeehhhhhhhee
Confidence 9999999999998888999999999999999974 446667666789999
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--c------CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--Y------YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~------~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
++|.|||++.+.|+.+|.+++|+....+++....- | ...|+.+.|.|.. ..+++.+.|..|+|||+++..+
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l 536 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL 536 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence 99999999999999999999999987776554321 1 2279999999744 3577888999999999999999
Q ss_pred EEeccCCCCCe--EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 376 VAWGEGHNSWV--SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 376 ~~~~~~h~~~V--~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+..|+|+...= ....|+. || ++|++++.|..|++|++...
T Consensus 537 v~KfKG~~n~~SQ~~Asfs~-------Dg------k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 537 VHKFKGFRNTSSQISASFSS-------DG------KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhhhcccccCCcceeeeEcc-------CC------CEEEEeecCceEEEEeCCCC
Confidence 99999764322 3567888 99 89999999999999998543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=207.17 Aligned_cols=316 Identities=14% Similarity=0.175 Sum_probs=244.1
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
..++.+..|.+.++.++-... ...+.+++.|.+-+||.++. ++-+... .+|.+.|++|+|++.+.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~t---qpi~gtASADhTA~iWs~Es-----g~CL~~Y-------~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADST---QPICGTASADHTARIWSLES-----GACLATY-------TGHTGSVNSIKFHNSGL 203 (481)
T ss_pred eehhhhcccccceeeehhhcC---CcceeecccccceeEEeecc-----ccceeee-------cccccceeeEEeccccc
Confidence 345566678888888877766 55788899999999999987 3333322 25999999999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCC-----C------cccccccceeeeecCCC---CCCCCeeEeeecCCCeEEEEECC
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDS-----S------FPVIKDQTQFSVAHPRY---SKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
++++++.|++..||...-+-.... . .........+.-...+. --..|+..+.+|.+.|.++.|-.
T Consensus 204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 999999999999998422100000 0 00000000000000000 12467889999999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~ 388 (548)
.|+.+++++.|.+..+||+++++++..+.+|...++.|+-+|..+++++.+.|-+.++||++.. ..+..|+||...|++
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999864 467889999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
+.|.. |. .+++++.|.+|++||++. ...+.+++...+.+.+..+.+.. .+.+-.....+
T Consensus 363 ~vF~~-------dd-------~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~------iIAiPhDNRqv 422 (481)
T KOG0300|consen 363 VVFNT-------DD-------RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHP------IIAIPHDNRQV 422 (481)
T ss_pred EEEec-------CC-------ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCc------eEEeccCCceE
Confidence 99986 53 799999999999999986 45677888888888888877763 23333445567
Q ss_pred ceeecCCCC----ceEEeecCCCCeeEEEEeCC----eEEEEECCCeEEEEeCCCC
Q 008939 468 SMRDVPKLS----PLVAHRVHTEPLSGLIFTQE----SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 468 ~~~d~~~~~----~~~~~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~~~~~ 515 (548)
+++|+.-.. |-..-++|..-|++++|..+ .|++++.|..+.-|.+...
T Consensus 423 RlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 423 RLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 777765332 33345689999999999986 2999999999999997654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=222.32 Aligned_cols=374 Identities=16% Similarity=0.193 Sum_probs=256.7
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEec----------------------CC--CCceEEEecCCCCCCceEEEEE
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF----------------------SN--SNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~----------------------~~--~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
..++|+++..+ .|++++-++-+ -+.++.+ .. -....+.|++. ...|.+..
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~--y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet---~~klscVY 343 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLD--YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET---TDKLSCVY 343 (1080)
T ss_pred ecceEEEeeccceeeecCcchhh--hccccccccccccchhhcccccccccccCcccCCceeEEEecCC---CceEEEEE
Confidence 45788887777 99999876632 1111111 00 12355678877 66899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC----------CcEEEEEeCCCcEEEEEcCCCCC
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG----------DGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~----------~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
.|..||+||++.. ...+ +....+ -|...|+++.-.|-. +..|++++.|++|++|++.....
T Consensus 344 ndhSlYvWDvrD~-~kvg-k~~s~l-------yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDV-NKVG-KCSSML-------YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred cCceEEEEecccc-cccc-ceeeee-------eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 9999999999862 1112 222211 166667776665511 11699999999999999976211
Q ss_pred CCCCcc------------cccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 266 GDSSFP------------VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 266 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
...+. -.....++........-++.....-.....+.+++.+|+|++||+|..-|.|+|||+..-+.
T Consensus 415 -n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 415 -NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred -cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 11110 00001111111111111112222222346899999999999999999999999999999888
Q ss_pred EEeeeecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 334 ICGGKSYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
...+.+|...|.|+.|+-. .++||+++.|+.|+|||+.. ..+++++.+|.+.|++|.|-- +| ...
T Consensus 494 ~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-------~g----ln~ 562 (1080)
T KOG1408|consen 494 TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-------NG----LNR 562 (1080)
T ss_pred hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-------cC----Cce
Confidence 9999999999999999863 36899999999999999964 467889999999999999976 44 116
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCC------CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPL------GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+++++.|..|.+=-.+.......+..+.. ...+...+. -..+.++..|..++++++...+....+++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecc
Confidence 799999998776432221111111111100 011111111 13456788899999999999999988875
Q ss_pred ---CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 484 ---HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 484 ---h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
|.+..-.+...|. +|+|.+.|.+|+++|+..++. ...+|.+.|. .|++|.+.||+..-.|.+|
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 6667888888996 599999999999999888773 4458999887 8999999999998887776
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=227.59 Aligned_cols=234 Identities=14% Similarity=0.159 Sum_probs=173.2
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
|+.++.|.+|++... ...... ..|...|.+++|+|+..++|++|+.|+.|+|||+...+.....
T Consensus 50 GG~~gvI~L~~~~r~------~~v~~L------~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK------PPVIKL------KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---- 113 (568)
T ss_pred CCceeEEEeeecCCC------ceEEEE------cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----
Confidence 456678888886541 111111 2489999999999984449999999999999999753211000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...++..+.+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+|+
T Consensus 114 --------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd 178 (568)
T PTZ00420 114 --------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK 178 (568)
T ss_pred --------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC
Confidence 01355677889999999999998875 5789999999999999998777765 5678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEE-----EecCCCCCCCCCCccceeEEEEEEeCCC----eEEEE
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVA-----FDSYWSQPNSDGTAETVMYRFGSVGQDT----RLLLW 423 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~-----~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----~i~lw 423 (548)
|.+|++++.|+.|+|||+++++.+..+.+|.+.+.... |++ ++ .+|++++.|+ .|+||
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-------d~------~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-------DD------NYILSTGFSKNNMREMKLW 245 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-------CC------CEEEEEEcCCCCccEEEEE
Confidence 99999999999999999999999999999988764433 345 66 5788887764 79999
Q ss_pred ECCC-CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 424 DLEM-DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 424 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
|++. ..++..+.. ..+...+......++ .+++
T Consensus 246 Dlr~~~~pl~~~~l---------------------------------------------d~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 246 DLKNTTSALVTMSI---------------------------------------------DNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred ECCCCCCceEEEEe---------------------------------------------cCCccceEEeeeCCCCCEEEE
Confidence 9985 333332221 112233333333333 4789
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
|+.|+.|++|++..+.
T Consensus 281 GkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 281 GKGDGNCRYYQHSLGS 296 (568)
T ss_pred EECCCeEEEEEccCCc
Confidence 9999999999987654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=210.60 Aligned_cols=277 Identities=15% Similarity=0.213 Sum_probs=222.8
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.++.+...|. ...+++|+.|..+.++|... ..+... ..+|...|+.+.|+|+.. .+++++.|-.
T Consensus 221 gi~ald~~~s---~~~ilTGG~d~~av~~d~~s------~q~l~~------~~Gh~kki~~v~~~~~~~-~v~~aSad~~ 284 (506)
T KOG0289|consen 221 GITALDIIPS---SSKILTGGEDKTAVLFDKPS------NQILAT------LKGHTKKITSVKFHKDLD-TVITASADEI 284 (506)
T ss_pred CeeEEeecCC---CCcceecCCCCceEEEecch------hhhhhh------ccCcceEEEEEEeccchh-heeecCCcce
Confidence 4455555554 45799999999999999765 122211 225899999999999998 8999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|+||...... .......|+.+|+.+..+|.|.||++++.|++..+.|++++.++
T Consensus 285 i~vws~~~~s--------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 285 IRVWSVPLSS--------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred EEeecccccc--------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 9999987521 23445667899999999999999999999999999999999987
Q ss_pred Eeeeec--CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 335 CGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 335 ~~~~~~--~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...... .-.+++.+|+|||.+|.+|..|+.|+|||+.++..+..|.+|.++|..|+|+. +| |+|+
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-------NG------Y~La 405 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-------NG------YWLA 405 (506)
T ss_pred EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-------Cc------eEEE
Confidence 765532 23589999999999999999999999999999999999999999999999998 99 9999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCC--CCCceecCCCCccccCCeeeecccCCCCceee--cCCCCceEEeecCCCCe
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPL--GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD--VPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d--~~~~~~~~~~~~h~~~V 488 (548)
+++.|+.|++||++.-+...++..+.. ...+.|...|. .+.++..+-.+++++ ...+..+..+..|.+..
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt------~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT------YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS 479 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC------eEEeecceeEEEEEecccccceeeehhhhccccc
Confidence 999999999999999888887776543 66677766663 222332222233333 23667778888899899
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
+.+.|..+ .+++++.|..++++.+
T Consensus 480 t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeecccceEEeeccchhheEEeec
Confidence 99999885 5999999999998865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-24 Score=221.57 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=172.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc--cceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG--KKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~--~~~~~~~~~~~~~~~~ 229 (548)
.+++|+... ..++..+..|...|.+++|+|+. +.+|++|+.||.|++||+........ ..... ....|
T Consensus 55 vI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~--~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~------~L~gH 124 (568)
T PTZ00420 55 AIRLENQMR--KPPVIKLKGHTSSILDLQFNPCF--SEILASGSEDLTIRVWEIPHNDESVKEIKDPQC------ILKGH 124 (568)
T ss_pred EEEeeecCC--CceEEEEcCCCCCEEEEEEcCCC--CCEEEEEeCCCeEEEEECCCCCccccccccceE------EeecC
Confidence 789999876 34788889999999999999972 56899999999999999975210000 00010 11247
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...|.+++|+|++..+|++++.|+.|+|||++... .+..+. |...|.+++|+|
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------------------------~~~~i~-~~~~V~Slswsp 177 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------------------------RAFQIN-MPKKLSSLKWNI 177 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--------------------------EEEEEe-cCCcEEEEEECC
Confidence 89999999999988567899999999999998621 122232 346799999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEE-----EEEccCCCEEEEEeCCC----eEEEEECCC-ceeEEec
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC-----CAWSMDGKYILTGGEDD----LVQVWSMED-RKVVAWG 379 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~-----l~~spdg~~l~sgs~dg----~I~vwd~~~-~~~~~~~ 379 (548)
+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ .+++..+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 9999999999999999999999999999999876533 33568989999987764 799999995 5566554
Q ss_pred cC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 380 EG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 380 ~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.. +.+.+.. .|++ .+| .++++|..|+.|++|++..+.
T Consensus 258 ~ld~~~~~L~p-~~D~------~tg------~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 258 SIDNASAPLIP-HYDE------STG------LIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EecCCccceEE-eeeC------CCC------CEEEEEECCCeEEEEEccCCc
Confidence 42 2222222 3333 046 688999999999999998764
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=222.39 Aligned_cols=240 Identities=19% Similarity=0.316 Sum_probs=210.6
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.+.|+++.|+++|.+|+++..+ .|+|||..... .+..+.. |...+-|++|+.. .+.+|+.++.|..+|++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSS-----VLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEeccCc-----eEEEecCCCcEEEEEEec
Confidence 8899999999999999999988 99999999844 8888888 8999999999844 799999999999999997
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
...... . ...|...|..++|++++. +|++|+.|+.+.|||...
T Consensus 290 ~~~~~~-~----------~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~------------------------- 332 (484)
T KOG0305|consen 290 SQHVVS-T----------LQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS------------------------- 332 (484)
T ss_pred chhhhh-h----------hhcccceeeeeEECCCCC-eeccCCCccceEeccCCC-------------------------
Confidence 321111 1 225899999999999999 999999999999999854
Q ss_pred CCCCeeEeeecCCCeEEEEECC-CCCEEEEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE--EeCC
Q 008939 288 KSNPIARWHICQGSINSIAFST-DGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT--GGED 362 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--gs~d 362 (548)
..+...+..|...|.+++|+| ...+||+|+ .|+.|++||..+++.+..+. ....|..|.|++..+-|++ |..+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence 467888899999999999999 677899864 79999999999999988766 4578999999999876665 4457
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+.|.||+..+.+.+..+.+|...|..++++| || ..+++++.|.+|++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-------dg------~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP-------DG------ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC-------CC------CEEEEecccCcEEeccccCC
Confidence 8999999999999999999999999999999 99 79999999999999998764
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=212.77 Aligned_cols=272 Identities=18% Similarity=0.169 Sum_probs=225.0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|...|.-+.|+++|. +||+++.|.+..+|++..+.. .+..+++.+|..+|.-+.||
T Consensus 223 htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~-----------------------~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVH-----------------------FKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcc-----------------------eeeeeeeecccCceEEEEEC
Confidence 899999999999999 999999999999999875322 23467788899999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V 386 (548)
||.++|++|+.|..+++||..++.+...+.. +...+.+++|.|||..+++|+.|+.|..||++ ++.+..+++- ...|
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKV 357 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccccee
Confidence 9999999999999999999999998776643 45789999999999999999999999999997 4445555543 3568
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++..+ || .++++.+.|..|++++..+...+..+..+.++++.+++.++ ..+.+--.+..
T Consensus 358 ~dlait~-------Dg------k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~------k~~LvnL~~qe 418 (519)
T KOG0293|consen 358 HDLAITY-------DG------KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG------KLALVNLQDQE 418 (519)
T ss_pred EEEEEcC-------CC------cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC------cEEEEEcccCe
Confidence 9999999 99 78889999999999999988887777777888888888887 33344455678
Q ss_pred CceeecCCCCceEEeecCCCCe--eEEEEeC---CeEEEEECCCeEEEEeCCCCC--ccccCCCCcEE--EecCCC-Cce
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPL--SGLIFTQ---ESVLTVCREGHIKIWMRPGVA--ESQSSSSETVL--STSSKD-KPL 536 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V--~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~--~~s~d~-~~l 536 (548)
+.+||+.....+..+.||...- -.-+|-- ..+++|++|++|+||++.+++ ....+|...|. +++|.+ .++
T Consensus 419 i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ 498 (519)
T KOG0293|consen 419 IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF 498 (519)
T ss_pred eEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence 9999999989999999997653 3334543 359999999999999998877 45568887776 677777 458
Q ss_pred Eeeecccc
Q 008939 537 LSSKVVTS 544 (548)
Q Consensus 537 ~s~~~~g~ 544 (548)
|+|...|.
T Consensus 499 ASasDDgt 506 (519)
T KOG0293|consen 499 ASASDDGT 506 (519)
T ss_pred hccCCCCe
Confidence 88877654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=214.49 Aligned_cols=259 Identities=15% Similarity=0.280 Sum_probs=208.4
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC--CeEEEEEccCCCCC--------CeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG--DAIFISDLNSQDKD--------PIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~~~~~~--------~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
..-.|.+.|..+.+.|+...|++... ..++|||....... |-..+.+|...-..+.|++.. ...|+++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~--~g~Lls~ 196 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ--EGTLLSG 196 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc--ceeEeec
Confidence 44568999999999999888877433 39999998865422 233777888778889999984 4589999
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+.|+.|++||+.....+ .+.+... .....|...|.+++|++....+|++++.|+.+.|||++.. .
T Consensus 197 ~~d~~i~lwdi~~~~~~-~~~~~p~----~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~--------- 261 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKE-DKVVDPK----TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T--------- 261 (422)
T ss_pred cCCCcEEEEeccccccC-Cccccce----EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C---------
Confidence 99999999999874221 1111111 1123589999999999998889999999999999999962 1
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spd 352 (548)
.++.+...+|.+.|+|++|+| ++..||+|+.|++|++||++.. +.+.++.+|...|.++.|+|+
T Consensus 262 --------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 262 --------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred --------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 345566778899999999999 7788999999999999999875 467889999999999999997
Q ss_pred CC-EEEEEeCCCeEEEEECCCc--------------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 353 GK-YILTGGEDDLVQVWSMEDR--------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 353 g~-~l~sgs~dg~I~vwd~~~~--------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
.+ .||+++.|+.+.|||+..- +++....||...|..+.|+| +.. ..|+|++.|
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp-------~eP-----W~I~SvaeD 395 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP-------NEP-----WTIASVAED 395 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC-------CCC-----eEEEEecCC
Confidence 65 7889999999999999641 23455568999999999999 431 689999999
Q ss_pred CeEEEEECC
Q 008939 418 TRLLLWDLE 426 (548)
Q Consensus 418 g~i~lwd~~ 426 (548)
+.+.||.+.
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 999999976
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=211.65 Aligned_cols=294 Identities=15% Similarity=0.172 Sum_probs=230.1
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccccee---eeeeec--cCC-cccCcceEEEEEe
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV---GAHHYN--KDG-SVNNSRCTSVTWV 239 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~---~~~~~~--~~~-~~~~~~v~~l~~~ 239 (548)
+..+.-|.-.++|++++|+ ..+.+.++.+|.|.-|++.+.......... ...++. +.. +.|...+.+++.+
T Consensus 135 ~~~~~~H~~s~~~vals~d---~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD---DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeecc---ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 5566668889999999999 778999999999999998874221000000 000111 111 3689999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC
Q 008939 240 PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR 319 (548)
Q Consensus 240 p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~ 319 (548)
+|+. +|++|+.|..|.||+.++ .++++.|.+|.+.|.+++|-.....|++++.
T Consensus 212 ~Dgk-ylatgg~d~~v~Iw~~~t--------------------------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 212 SDGK-YLATGGRDRHVQIWDCDT--------------------------LEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred CCCc-EEEecCCCceEEEecCcc--------------------------cchhhcccccccceeeeeeecCccceeeeec
Confidence 9999 999999999999999987 5678889999999999999988888999999
Q ss_pred CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 320 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
|+.|++|+++....+.++.+|.+.|..|....-++.+-+|+.|+++++|++..- ....+.+|.+.+-|++|-.
T Consensus 265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In------ 337 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN------ 337 (479)
T ss_pred CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec------
Confidence 999999999988889999999999999998888888888889999999999543 3345678999999999974
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+ ..|++|+.||.|.||++.+.+++...+..+..... ..+
T Consensus 338 -~-------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~-------------------------------~~~-- 376 (479)
T KOG0299|consen 338 -D-------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE-------------------------------LDP-- 376 (479)
T ss_pred -c-------cceeeccCCceEEEeeecccCceeEeeccccccCC-------------------------------ccc--
Confidence 4 48999999999999999999888776542211100 000
Q ss_pred EeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCcccc-----CCCCcEE--EecCCCCceEee
Q 008939 480 AHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQS-----SSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 480 ~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~-----~~~~~v~--~~s~d~~~l~s~ 539 (548)
..+...|++|+..| |.+++|+.+|.||+|.+..+..... ....-|. +|+++|++|++|
T Consensus 377 --~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 377 --VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred --cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 02335799999988 5799999999999999887742221 2223333 678999988777
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-26 Score=214.48 Aligned_cols=281 Identities=16% Similarity=0.210 Sum_probs=232.6
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
...|.+.+-.+.|-++...+++++.| .|++|+...+..+.+.++......++.++|+++ +..+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~---~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD---NKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC---CceEEeecCCCceeeee
Confidence 34678888899999998899998888 999999988776788889888899999999999 88899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+. +.. ....+|.+.|+++.|..... .+++|+.|.+|++||+.+.......++.
T Consensus 248 vd~~-----r~~-------~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~------------ 302 (459)
T KOG0288|consen 248 VDSL-----RLR-------HTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPG------------ 302 (459)
T ss_pred ccch-----hhh-------hhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccc------------
Confidence 9872 111 11235999999999998876 6999999999999999873332222221
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+..++.+ ...++++-.|+.||+||.+...++.....+ +.|+++..++++..|.+++.|.+
T Consensus 303 ---------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 303 ---------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred ---------------ccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc
Confidence 344555554 456888999999999999999998888766 58999999999999999999999
Q ss_pred EEEEECCCceeEEeccCC----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 365 VQVWSMEDRKVVAWGEGH----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.+.|+++.+..+.+.+. ....+.+.|+| ++ .++++|+.||.|+||++.++++...+..
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-------d~------~YvaAGS~dgsv~iW~v~tgKlE~~l~~---- 427 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-------DG------SYVAAGSADGSVYIWSVFTGKLEKVLSL---- 427 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECC-------CC------ceeeeccCCCcEEEEEccCceEEEEecc----
Confidence 999999998887777532 23478999999 99 7999999999999999999998876654
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC-CCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+. ..|++++|+|. +|++++.++.+++|.
T Consensus 428 ------------------------------------------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 ------------------------------------------STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------------------------------------------CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 122 26999999996 599999999999993
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-26 Score=203.61 Aligned_cols=254 Identities=19% Similarity=0.296 Sum_probs=205.7
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccC------C---------CC-CCeEEEecCCCCceEEEecCCC
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNS------Q---------DK-DPIKSIHFSNSNPVCHAFDQDA 185 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~------~---------~~-~~i~~~~~~~~~~~~~~~~p~~ 185 (548)
..-...|..+..+.+|++||.++++++.| .|+|.|++. . .. ..|+++.-|-+.+.++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR- 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-
Confidence 34556799999999999999999999999 999999872 0 01 246777778999999999999
Q ss_pred CCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 186 KDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 186 ~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
...|++|+.|+.|++||+........-++++ ...+|.+|.|+|.|+ +|++|..-..+++||+++-..
T Consensus 184 --e~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 184 --ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred --hheEEeccCCCeEEEEecccHHHHHHHHHhh----------ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE
Confidence 7789999999999999988632111112211 467899999999999 999999999999999987211
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecC-Cc
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYY-GA 343 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~-~~ 343 (548)
... .+| -+.|.+.|+++.+++.+++.++++.||.|++||--.++++.++. .|. ..
T Consensus 251 fvs--------------------anP---d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 251 FVS--------------------ANP---DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred eee--------------------cCc---ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 100 011 14577999999999999999999999999999999999887754 454 47
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec--------------------------------------------
Q 008939 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------------------------------------------- 379 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------------------------------------------- 379 (548)
|.+..|..+++++++.+.|..+++|.+.+++++..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 889999999999999999999999999888766644
Q ss_pred -----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 380 -----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 380 -----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+|++.+..+.-+| .+ ..+++|+.|-.+++|--+
T Consensus 388 ~~l~slgHn~a~R~i~HSP-------~~------p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 VALLSLGHNGAVRWIVHSP-------VE------PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhcccCCCCCceEEEeCC-------CC------Cceeeecccceeeeeeec
Confidence 36788888888888 66 679999999999999644
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=228.18 Aligned_cols=265 Identities=19% Similarity=0.269 Sum_probs=218.8
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
+...++|..|..+ .+++++.+..|.+||..+ +..+... ...|.+.|.++++...+. +|++|+.
T Consensus 207 ~~~~~~~~q~~~~-----~~~~~s~~~tl~~~~~~~-----~~~i~~~------l~GH~g~V~~l~~~~~~~-~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG-----FFKSGSDDSTLHLWDLNN-----GYLILTR------LVGHFGGVWGLAFPSGGD-KLVSGST 269 (537)
T ss_pred CcchhhhheeecC-----eEEecCCCceeEEeeccc-----ceEEEee------ccCCCCCceeEEEecCCC-EEEEEec
Confidence 4567788888743 799999999999999876 2222221 225999999999987555 9999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|.++++||..+ ...+..+.+|+..|.++...+ .++++|+.|.+|++|++.++
T Consensus 270 D~t~rvWd~~s--------------------------g~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 270 DKTERVWDCST--------------------------GECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred CCcEEeEecCC--------------------------CcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc
Confidence 99999999876 356888899999999998754 47888999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.++..+.+|.++|+++... +.++++|+.|+.|++||+.++++++.+.+|..+|.++.+.+ . .++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-------~-------~~~ 385 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-------E-------NRL 385 (537)
T ss_pred ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-------c-------ceE
Confidence 9999999999999999998 77999999999999999999999999999999999999864 2 389
Q ss_pred EEEeCCCeEEEEECCCC-eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 412 GSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
++|+.|+.|++||+++. +|+. .+.+|.+-|..
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~-----------------------------------------------tl~~h~~~v~~ 418 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIH-----------------------------------------------TLQGHTSLVSS 418 (537)
T ss_pred EeeeeccceEeecCCchhhhhh-----------------------------------------------hhcCCcccccc
Confidence 99999999999999987 5443 45568888999
Q ss_pred EEEeCCeEEEEECCCeEEEEeCCCCCcccc--C-CCCcEEEecCCCCceEeeecccc
Q 008939 491 LIFTQESVLTVCREGHIKIWMRPGVAESQS--S-SSETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 491 l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~--~-~~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
+.+....|++++.|++|++||......... . +...+.++....+.++.+...|.
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~ 475 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGS 475 (537)
T ss_pred cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCe
Confidence 999889999999999999999887663322 3 44677777766555555544443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-25 Score=198.28 Aligned_cols=275 Identities=16% Similarity=0.220 Sum_probs=213.5
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|++|+....|.-+++..................-....|.+.|++++.+ +. ++++|+.|.+|+|||+++.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~------ 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKR------ 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccch------
Confidence 48889999888888876421111111111111111233589999999985 55 9999999999999999872
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC--EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|+.+
T Consensus 74 --------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 74 --------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred --------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 33455666789999999998654 89999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+|.+++.++.+.|+.+++||+-+++.-..+. -...-+.|.|+| .| .+++..+.+ .|-+|.+..
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~-------~G------d~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSP-------QG------DHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcC-------CC------CEEEEEecc-EEEEEeccc
Confidence 999999999999999999999999887654444 222234499999 77 466666654 699999998
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEEEEEC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLTVCR 503 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~t~s~ 503 (548)
..+...+..+..+.++.|-. ...+.+|..+..+.+||.....++..+.+|..+|.++.+-.+ +|+|++.
T Consensus 199 A~v~~~i~~~~r~l~~~~l~-------~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 199 ASVFREIENPKRILCATFLD-------GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred HhHhhhhhccccceeeeecC-------CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 88777666643333333322 345678888899999999999999999999999999996443 6999999
Q ss_pred CCeEEEEeCCCC
Q 008939 504 EGHIKIWMRPGV 515 (548)
Q Consensus 504 Dg~I~iW~~~~~ 515 (548)
||.|++||+...
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999998765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=210.39 Aligned_cols=241 Identities=20% Similarity=0.291 Sum_probs=200.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
.+.-+.|..|+||++ +|++|+.||-|.+|+..+ ++....+.- .....+-.+..+|.|+.|+
T Consensus 212 ~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~-GKlrKDLkY-----------------QAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTT-GKLRKDLKY-----------------QAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred cccchhheeeCCCCc-eEeeccccceeeeehhcc-chhhhhhhh-----------------hhhcceeecccceEEEeec
Confidence 466788999999999 999999999999999976 444433321 1122344456899999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
.|...||+|+.||.|+||.+++|+++..+. +|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.++||.+.|+
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999999999999999999998876 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
...|.+ || ..+++++.||+|++|+.++.+|+.+++..
T Consensus 353 ~a~ft~-------dG------~~iisaSsDgtvkvW~~KtteC~~Tfk~~------------------------------ 389 (508)
T KOG0275|consen 353 EATFTD-------DG------HHIISASSDGTVKVWHGKTTECLSTFKPL------------------------------ 389 (508)
T ss_pred ceEEcC-------CC------CeEEEecCCccEEEecCcchhhhhhccCC------------------------------
Confidence 999999 99 89999999999999999999999877651
Q ss_pred ceeecCCCCceEEeecCCCCeeEEEEeC---CeEEEEECCCeEEEEeCCCCCccccC--CC---CcEE-EecCCCCceEe
Q 008939 468 SMRDVPKLSPLVAHRVHTEPLSGLIFTQ---ESVLTVCREGHIKIWMRPGVAESQSS--SS---ETVL-STSSKDKPLLS 538 (548)
Q Consensus 468 ~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d~l~t~s~Dg~I~iW~~~~~~~~~~~--~~---~~v~-~~s~d~~~l~s 538 (548)
+...+|+.+..-| +.++.+....+|.|-++.+.....+. .. .-+. .+||.|+++..
T Consensus 390 ---------------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 390 ---------------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred ---------------CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 1244667776655 46888999999999999887654442 22 2233 67899998887
Q ss_pred eecccccc
Q 008939 539 SKVVTSSY 546 (548)
Q Consensus 539 ~~~~g~~~ 546 (548)
.+..+..|
T Consensus 455 igED~vlY 462 (508)
T KOG0275|consen 455 IGEDGVLY 462 (508)
T ss_pred EccCcEEE
Confidence 77666554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=209.63 Aligned_cols=278 Identities=12% Similarity=0.176 Sum_probs=227.2
Q ss_pred cCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|...|.+++-+|.. ..+++++.| .|+|||+.. ...+..+..|.+.|..++++.. .+++++.|.+|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEeccc-----ceEEecCCcceeee
Confidence 37899999999999987 567777777 999999998 4588999999999999999874 58999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.++. ++.+.+. .+..+..|.-+..+. .|++++. .|.|||...
T Consensus 135 k~~~---~p~~til-----------g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R--------------------- 176 (433)
T KOG0268|consen 135 KIDG---PPLHTIL-----------GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQR--------------------- 176 (433)
T ss_pred eccC---Ccceeee-----------ccccccccccccccc-cccccCc--eeeeccccc---------------------
Confidence 8875 1111111 466677787777776 8888876 599999875
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+|+..+......|.++.|+|- ...|+++..|+.|.+||+++..++..+. ....-+.|+|+|.+-.+++|++|
T Consensus 177 -----~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 177 -----DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred -----CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccc
Confidence 4677777777789999999994 5678888899999999999998776654 23446789999988889999999
Q ss_pred CeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 363 DLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 363 g~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
..++.||++.- +++....+|.+.|..|+|+| -| .-|++|+.|.+|+||..+.+.....+..
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-------tG------~EfvsgsyDksIRIf~~~~~~SRdiYht----- 312 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-------TG------QEFVSGSYDKSIRIFPVNHGHSRDIYHT----- 312 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCC-------Cc------chhccccccceEEEeecCCCcchhhhhH-----
Confidence 99999999874 57888899999999999999 88 7899999999999999987654322111
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
--...|.+|.|+.| ++++||+|+.||+|.-.
T Consensus 313 -----------------------------------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 313 -----------------------------------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -----------------------------------------hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 11356999999998 59999999999999843
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=197.54 Aligned_cols=264 Identities=13% Similarity=0.215 Sum_probs=199.3
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+.|.+|+|+|...++|++++.||+||+|++...+.... +....|.++|.+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------------ka~~~~~~PvL~v~Ws 81 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------------KAQQSHDGPVLDVCWS 81 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------------hhhhccCCCeEEEEEc
Confidence 4788999999996665888999999999999986433221 2234467999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC--EEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.||..+++++.|+.+++||+.+++. ..+..|.++|.++.|-+... .|++|+.|.+|+.||++...++.+++ -.+.|
T Consensus 82 ddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 82 DDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred cCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 9999999999999999999999965 45677999999999988765 89999999999999999999999888 55677
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeeeeccc
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
+++..-. .+++.+..+..|.+|+|+.+......... -+..++++..+. ....+|+.
T Consensus 160 Ya~Dv~~---------------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~------~~~alGsi 218 (347)
T KOG0647|consen 160 YAADVLY---------------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK------DGFALGSI 218 (347)
T ss_pred eehhccC---------------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC------CceEeeee
Confidence 7776632 37888889999999999876543322111 223334443333 22267777
Q ss_pred CCCCceeecCCC--CceEEeecCCC---------CeeEEEEeCC--eEEEEECCCeEEEEeCCCCC--ccccCCCCcEE-
Q 008939 464 QPAPSMRDVPKL--SPLVAHRVHTE---------PLSGLIFTQE--SVLTVCREGHIKIWMRPGVA--ESQSSSSETVL- 527 (548)
Q Consensus 464 ~~~~~~~d~~~~--~~~~~~~~h~~---------~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~--~~~~~~~~~v~- 527 (548)
++.+.+..+... +.-+.++.|.. .|++|+|+|. .|+|++.||++.+||-..+. .....+...|.
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 777777666554 55566666752 5788999995 39999999999999965433 22233444444
Q ss_pred -EecCCCCceEee
Q 008939 528 -STSSKDKPLLSS 539 (548)
Q Consensus 528 -~~s~d~~~l~s~ 539 (548)
+|+.+|.+++.+
T Consensus 299 c~fn~~G~ifaYA 311 (347)
T KOG0647|consen 299 CSFNRNGSIFAYA 311 (347)
T ss_pred eEecCCCCEEEEE
Confidence 888999988776
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-25 Score=229.22 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=222.0
Q ss_pred cCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...|.+|..+|++. .+++|+ .||.++||+.+.-........ ......+.....|.+.|+|+.
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~--------------~~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKN--------------ENLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhh--------------cccchhheeeccccCceeEEE
Confidence 456699999999999 999999 999999999764111000000 001355677788999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCC------------------CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSK------------------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~------------------~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
|+|||++||+|+.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++-|+.|.||
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence 999999999999999999999872 13567789999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-------CCCC
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-------PLGG 441 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-------~~~~ 441 (548)
|..+.+.+..+++|.+.|..+.|+| -| ++|++-+.|++|++|++..-.+...+..+ ....
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP-------~G------ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDP-------IG------KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred ccccceeeeeeecccccccceEECC-------cc------CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999 88 89999999999999998776666655442 1123
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-------C------------eEEEEE
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-------E------------SVLTVC 502 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-------d------------~l~t~s 502 (548)
.+.++|+|....-...+ -.-...+.+.+...++.-..+-||..++.++.|+| . .+++|+
T Consensus 224 RlSWSPDG~~las~nA~--n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAV--NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred ecccCCCcCeecchhhc--cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 45667777421111111 11233455666677777788899999999999998 2 268999
Q ss_pred CCCeEEEEeCCCCCcccc---CCCCcEE--EecCCCCceEeeecccccc
Q 008939 503 REGHIKIWMRPGVAESQS---SSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
.|++|-||.......... -....|+ +|+|||-.|......|+++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVA 350 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEE
Confidence 999999999643331111 1223344 8999999999998888764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=217.13 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=222.3
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceE-EEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVC-HAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~-~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|..-|..+++.+. ..++.++.| +++||+-.....-+.+.+..+.+-+.+ ++|.+. ++-.|++|+.|..|.+|
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~--~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES--DKGRLVVGGMDTTIIVF 86 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc--cCcceEeecccceEEEE
Confidence 4567777777776544 466677766 999999876554555666656666666 777762 35679999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.+.+. .++... ..|+..|+|+....++. +++|+.|.++++|....
T Consensus 87 ~~~~~-----~P~~~L-------kgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--------------------- 131 (745)
T KOG0301|consen 87 KLSQA-----EPLYTL-------KGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--------------------- 131 (745)
T ss_pred ecCCC-----Cchhhh-------hccccceeeeecCCcCc--eEecccccceEEecchh---------------------
Confidence 98762 222111 24999999999877764 99999999999998764
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
....|++|+.+|.++++-|++ .+++|+.|.+|++|.- ++++.++.+|.+.|+.+++-+++ .++++++||
T Consensus 132 -------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg 200 (745)
T KOG0301|consen 132 -------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDG 200 (745)
T ss_pred -------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCc
Confidence 244588999999999999987 8999999999999976 78888999999999999999886 478999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
.|++|++ +++++.++.+|++.|+++.... ++ ..++++++|++++||+.. ++.+.+..
T Consensus 201 ~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-------~~------~~Ivs~gEDrtlriW~~~--e~~q~I~l------- 257 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHGHTNFVYSISMAL-------SD------GLIVSTGEDRTLRIWKKD--ECVQVITL------- 257 (745)
T ss_pred eEEEEec-cCceeeeeeccceEEEEEEecC-------CC------CeEEEecCCceEEEeecC--ceEEEEec-------
Confidence 9999999 7899999999999999999554 44 489999999999999976 67766654
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRP 513 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~ 513 (548)
..-.|+++.+-+++ |++|+.||.||||...
T Consensus 258 ----------------------------------------PttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 ----------------------------------------PTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ----------------------------------------CccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 23467888877765 9999999999999865
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=200.40 Aligned_cols=354 Identities=17% Similarity=0.196 Sum_probs=258.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC-----C----eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG-----D----AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~-----d----~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
...+|...+.++..+|+-..++++-. + .++|||-.+-. -+..+-+-...+.|++|++... |.+|+.-.
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~--TL~V~g~f~~GV~~vaFsk~~~-G~~l~~vD 175 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS--TLHVIGFFDRGVTCVAFSKING-GSLLCAVD 175 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce--eeeeeccccccceeeeecccCC-CceEEEec
Confidence 56789999999999998877775321 1 69999966533 5555556677999999999854 44444443
Q ss_pred cC--CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 196 NS--GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 196 ~d--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
.. ..+.+||... +.+..... ..+..|....|+|.+.+++++++ .|.+++|+.+.+.-. ..
T Consensus 176 ~s~~h~lSVWdWqk-----~~~~~~vk-------~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~-k~---- 237 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQK-----KAKLGPVK-------TSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLV-KR---- 237 (626)
T ss_pred CCCccccchhhchh-----hhccCcce-------eccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceE-EE----
Confidence 32 3377898654 22221111 14677889999999996655554 589999998863211 11
Q ss_pred cccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+..+ +.-|.|++|.++|. +++|..+|.|.||+..+.+.......|.+.|.+++.-.+
T Consensus 238 ------------------~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 238 ------------------QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred ------------------eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence 1111111 25689999999986 789999999999999988887777799999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCce-----------eE-----------------------------EeccCCCCCeEEEEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRK-----------VV-----------------------------AWGEGHNSWVSGVAFD 392 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~-----------~~-----------------------------~~~~~h~~~V~~v~~~ 392 (548)
|.+| +|+.|+.|..||-.-.+ .+ ...++|....+.++-+
T Consensus 299 Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 299 GTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH 377 (626)
T ss_pred ccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC
Confidence 9755 59999999999832100 00 0124788888899999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| +. .+++++++|+.++||+ ..+++.+.....+..++.|.+.+ .+++|+..+.--+.|.
T Consensus 378 p-------s~------~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-------~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 378 P-------SK------NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-------VVAVGTATGRWFVLDT 435 (626)
T ss_pred C-------Ch------hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-------eEEEeeccceEEEEec
Confidence 8 65 6899999999999999 66666666666777777777664 5677777777778888
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc----CCCCcEE--EecCCCCceEeeecc
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS----SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~----~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.+...+..... .++++.|.|+|++ |+.|+.|+.|.|+.+........ .+...+. .+|+|+++|.+-...
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 88777766666 8999999999985 99999999999999876542211 1224444 889999999876544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=190.24 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=220.6
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
..+.+...+..++|+.+ |..|+.|+.|+.+.+|+++.. +.. .......|.+.|-.++|+|..+.+|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~---g~~lasgs~dktv~v~n~e~~-----r~~-----~~~~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCD---GTKLASGSFDKTVSVWNLERD-----RFR-----KELVYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred HhhhhhhcceEEEEccc---CceeeecccCCceEEEEecch-----hhh-----hhhcccCCCcchhhheeCCCCCcceE
Confidence 34456778999999999 888999999999999999862 111 22234458899999999999888999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|.+|++||++.. +++.......+.| -+.|+|+|++++++..|..|.+.|
T Consensus 82 tas~dk~ir~wd~r~~--------------------------k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSG--------------------------KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFID 134 (313)
T ss_pred EecCCceEEEEEeccC--------------------------cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEE
Confidence 9999999999999873 2222222222333 478999999999999999999999
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.++.+.+...+ ..-.+..+.|+-++.+++.-...|.|.|.....-+++..+++|.....||.|+| +|
T Consensus 135 ~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-------~G----- 201 (313)
T KOG1407|consen 135 ARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-------DG----- 201 (313)
T ss_pred ecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-------CC-----
Confidence 99888776654 345678899998888877777789999999999999999999999999999999 99
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
++|++|+.|..+.|||+..--|++.+. -+.-+
T Consensus 202 -ryfA~GsADAlvSLWD~~ELiC~R~is-----------------------------------------------Rldwp 233 (313)
T KOG1407|consen 202 -RYFATGSADALVSLWDVDELICERCIS-----------------------------------------------RLDWP 233 (313)
T ss_pred -ceEeeccccceeeccChhHhhhheeec-----------------------------------------------cccCc
Confidence 899999999999999998766555443 36778
Q ss_pred eeEEEEeCCe--EEEEECCCeEEEEeCCCCC-ccccCCCCcEE--EecCCCCceEeeec
Q 008939 488 LSGLIFTQES--VLTVCREGHIKIWMRPGVA-ESQSSSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 488 V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~-~~~~~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
|+.|.|+.|+ |++|++|..|-|=+++++. ..+.++..+.. ++.|..-+||.+-.
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEec
Confidence 9999999984 9999999999998888766 34445554444 78898888887643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=178.06 Aligned_cols=286 Identities=20% Similarity=0.299 Sum_probs=214.4
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc------ccccceeeeeeeccCCcccCcceEEEE
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ------DVGKKLVGAHHYNKDGSVNNSRCTSVT 237 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~l~ 237 (548)
+.|..+. ....+..++|.|. |.+.++|+...+++|........ ....+.. . .-+..+.|++.|+|.+
T Consensus 24 ~~i~~l~-dsqairav~fhp~---g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~--v-~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPA---GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS--V-LCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEec-chhheeeEEecCC---CceEEeccCCceEEEEccccccCcccccccccCCCe--E-EeeeccccCccEEEEE
Confidence 3444444 3457889999999 88999999999988775433110 0111101 1 1112335899999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC----CCE
Q 008939 238 WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD----GTY 313 (548)
Q Consensus 238 ~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~ 313 (548)
|+|+|+ +|++|+.|.+|++..++.+.. ....+-..+..|.+.|..++|-.+ +.+
T Consensus 97 ws~~ge-liatgsndk~ik~l~fn~dt~---------------------~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 97 WSPCGE-LIATGSNDKTIKVLPFNADTC---------------------NATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred ecCccC-eEEecCCCceEEEEecccccc---------------------cccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 999999 999999999999988765321 112344567889999999999643 457
Q ss_pred EEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--C-----CCC
Q 008939 314 LATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--H-----NSW 385 (548)
Q Consensus 314 l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h-----~~~ 385 (548)
|++++ .|..|.+-|..+++....+.+|.+.|.++ ++=++-.+++|+.|.+|++||++-..++.++.. | .+.
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 77765 46778888888999999999999999887 344577899999999999999998888877641 2 368
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++.+| .| ++|+++-.|....+||++.++.++.+
T Consensus 234 vaav~vdp-------sg------rll~sg~~dssc~lydirg~r~iq~f------------------------------- 269 (350)
T KOG0641|consen 234 VAAVAVDP-------SG------RLLASGHADSSCMLYDIRGGRMIQRF------------------------------- 269 (350)
T ss_pred eEEEEECC-------Cc------ceeeeccCCCceEEEEeeCCceeeee-------------------------------
Confidence 99999999 88 89999999999999999988766543
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc------CCCCcEE--EecCCCCc
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS------SSSETVL--STSSKDKP 535 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~------~~~~~v~--~~s~d~~~ 535 (548)
..|...|.++.|+|. +++|++.|..|++-|+.+....+. .|...++ .|.|++-.
T Consensus 270 ----------------~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s 333 (350)
T KOG0641|consen 270 ----------------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS 333 (350)
T ss_pred ----------------CCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence 458999999999996 699999999999999988653222 4555444 56666654
Q ss_pred eEee
Q 008939 536 LLSS 539 (548)
Q Consensus 536 l~s~ 539 (548)
+++.
T Consensus 334 fiss 337 (350)
T KOG0641|consen 334 FISS 337 (350)
T ss_pred eeec
Confidence 4444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=192.80 Aligned_cols=302 Identities=21% Similarity=0.249 Sum_probs=216.2
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
+..+..|..+++|++|+.+ |..|++++.|+.|++|+++...+...+-+... ..-+-.+.+.|.||...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSd---GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--------ve~dhpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD---GKKLATISGDRSIRLWDVRDFENKEHRCIRQN--------VEYDHPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhhccCCceeeeEEcCC---CceeEEEeCCceEEEEecchhhhhhhhHhhcc--------ccCCCceEEEECCCcceE
Confidence 4566779999999999999 78899999999999999987544333322211 123466899999999866
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+++.....++++|-+.+.......++.... .-...-+.|+-.|-.+-.-.++++|++++.|..|.+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~--------------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHI--------------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccc--------------cccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 777777789999988664333222222211 111122345667777777778899999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC---Cc-----eeEEeccCCCCCeEEEEEecCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME---DR-----KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~~-----~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
|+++ |+++..+......-+..+.||+|++|++++---.|++|.+- +| ..+..++||.+.|..++|++
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---- 288 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---- 288 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC----
Confidence 9998 88888887776777788999999999999999999999863 22 24567889999999999998
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
+. .++++.+.||.++|||+.-.... ..++. .+..|. .|
T Consensus 289 ---~S------~r~vtvSkDG~wriwdtdVrY~~---~qDpk-----------------~Lk~g~-------------~p 326 (420)
T KOG2096|consen 289 ---SS------TRAVTVSKDGKWRIWDTDVRYEA---GQDPK-----------------ILKEGS-------------AP 326 (420)
T ss_pred ---Cc------ceeEEEecCCcEEEeeccceEec---CCCch-----------------HhhcCC-------------cc
Confidence 87 79999999999999998642211 00000 000000 01
Q ss_pred eEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc---cccCCCCcEE--EecCCCCceEeeecc
Q 008939 478 LVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE---SQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~---~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+. ....+++ .++.+|++ ++..+.-..|+++.-+.++. ...-|.+.+. +++++|+++++.+..
T Consensus 327 l~--aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 327 LH--AAGSEPV-RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred hh--hcCCCce-EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 11 1123455 78999986 77777778899888766552 2335666666 777999999988653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=196.49 Aligned_cols=246 Identities=17% Similarity=0.216 Sum_probs=208.1
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.|-+|.+.|-.+..+.+....++++.| +-+|||.-++. .+.++. |+.-+..++|+.+ .++|++|+.+.-+++|
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd--elhsf~-hkhivk~~af~~d---s~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD--ELHSFE-HKHIVKAVAFSQD---SNYLLTGGQEKLLRVF 127 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh--hhhhhh-hhheeeeEEeccc---chhhhccchHHHhhhh
Confidence 577899999999999999999999999 99999998866 888887 7789999999999 7789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+.....++ ++...|.+.|..+.|+...+ .|+++..|++|++||.+++.
T Consensus 128 dln~p~App-----------~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt------------------- 176 (334)
T KOG0278|consen 128 DLNRPKAPP-----------KEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT------------------- 176 (334)
T ss_pred hccCCCCCc-----------hhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc-------------------
Confidence 998632111 12235899999999999888 88888999999999999732
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.++.+.. ..+|+++.++++|++|.++ ..+.|.+||..+-.++..++- ...|.+..++|+...+++|++|.
T Consensus 177 -------~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 177 -------EVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred -------EEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcce
Confidence 2222222 2679999999999877666 456899999998888877653 35688999999999999999999
Q ss_pred eEEEEECCCceeEEec-cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 364 LVQVWSMEDRKVVAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.++.||..+++.+..+ ++|-++|.||.|+| || ...++|++||+|+||....++.
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-------dG------E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-------DG------ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECC-------CC------ceeeccCCCceEEEEEecCCCc
Confidence 9999999999988886 89999999999999 99 6899999999999999876553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=213.02 Aligned_cols=262 Identities=15% Similarity=0.147 Sum_probs=207.8
Q ss_pred CCCCEEEEecCC-eEEEEEccCCCCC----CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 140 GKGTYIIFNVGD-AIFISDLNSQDKD----PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 140 ~~g~~l~~~~~d-~v~vwd~~~~~~~----~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
|.++++.+++.| .|++|++.....+ .+.+++.|.+-+..++...+ ++.|++++.|-+|.+|+..... ..-.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---~~tlIS~SsDtTVK~W~~~~~~-~~c~ 110 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---GKTLISASSDTTVKVWNAHKDN-TFCM 110 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---CCceEEecCCceEEEeecccCc-chhH
Confidence 456678888888 9999998764432 36677778877777777777 6679999999999999987621 0111
Q ss_pred ceeeeeeeccCCcccCcceEEEEE-ecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeeecCCCCCCCCe
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTW-VPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~-~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.. ..-|.+-|.|++. .++.+ ++|+|+-|+.|.+||++.... ....+. .-+.
T Consensus 111 st---------ir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n-----------------~~t~ 163 (735)
T KOG0308|consen 111 ST---------IRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN-----------------NVTV 163 (735)
T ss_pred hh---------hhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc-----------------cccc
Confidence 11 1138999999999 66666 999999999999999987422 111111 1112
Q ss_pred eEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 293 ARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 293 ~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
..+- ++..+|++++.++.|..|++|+..+.|++||.++.+.+..+++|...|.++..++||..+++++.|++|++||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 2222 677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEeeeecCCCCCCcee
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~ 445 (548)
..+++.++..|...|+++..+| += ..+.+|+.|+.|..=|+++ .++...++.+.++..+..
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~-------sf------~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~ 305 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSP-------SF------THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL 305 (735)
T ss_pred ccceeeeEEeccCceEEEeeCC-------Cc------ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh
Confidence 9999999999999999999987 54 6899999999999999998 444444444444444433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=191.83 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=220.9
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee-e--eeccCCcccCcceEEEEEecCCCcEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA-H--HYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
.-|...|..+...+. +++++++|+.||.|.+||++........-++.. . --......|+-.|.++.|-|-+..+|
T Consensus 40 r~HgGsvNsL~id~t--egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLT--EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccc--cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 346678888888887 488999999999999999987432111111110 0 01123345899999999999888799
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECCCeE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRDGYL 323 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~dg~v 323 (548)
.+++.|.+++|||.++-. . ...|. -++.|..-+++|- ..++|+|..|-.|
T Consensus 118 tssSFDhtlKVWDtnTlQ-~-------------------------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQ-E-------------------------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ecccccceEEEeecccce-e-------------------------eEEee-cCceeehhhcChhhhcceEEEEecCCCcE
Confidence 999999999999998721 1 11111 1267888888882 4578899999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCE-EEEEeCCCeEEEEECCCc-eeEEe--------------ccCCCCCeE
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDR-KVVAW--------------GEGHNSWVS 387 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~-~~~~~--------------~~~h~~~V~ 387 (548)
++.|+..|..-+++.+|.+.|.++.|+|..++ |++|+.||.|++||++.- .+... -..|.+.|.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 99999999999999999999999999998885 788999999999999753 22222 235788999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeeeecccC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
+++|.. || .++++++.|..+++|+...|+-...-..+ ..-..+.+... ....+..+ ....+
T Consensus 251 gla~tS-------d~------~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~--~~~s~vfv-~~p~~ 314 (397)
T KOG4283|consen 251 GLAWTS-------DA------RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ--SMDSDVFV-LFPND 314 (397)
T ss_pred eeeecc-------cc------hhhhhccCccceEEeecccCcccccccccccccccccceEEEe--ecccceEE-EEecC
Confidence 999998 99 79999999999999999988643211110 11122222211 12222222 22223
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..+.+..+-.++.+..+..|-..|.+.+|.|+. +.++..|+.|..|-.
T Consensus 315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 667778888888999999999999999999985 999999999999975
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=217.21 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=200.6
Q ss_pred CCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 185 AKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 185 ~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
...+++|++|+.||.|++|++......+..+ +....+.|.+.|+++....+++ .|++++.|-+|++|+...+.
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~------~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP------YIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc------hhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 3347789999999999999998743222222 1122235899999999999998 89999999999999988632
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE-CCCCCEEEEEECCCeEEEEeCCCC--eEEEe-----
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF-STDGTYLATVGRDGYLRVFDYSKE--QLICG----- 336 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~----- 336 (548)
.-.+..+..|..-|.|+++ -++..++|+|+.|+.|.+||++++ +++..
T Consensus 107 ------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 107 ------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1234556778899999999 778889999999999999999977 23322
Q ss_pred ---ee-ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 337 ---GK-SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 337 ---~~-~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
+. ++...|++++..+.|..|++|+.++.|++||.++++.+..++||...|..+..++ || .+++
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d-------DG------t~~l 229 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND-------DG------TRLL 229 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC-------CC------CeEe
Confidence 22 6778999999999999999999999999999999999999999999999999999 99 7999
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEE
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~ 492 (548)
+++.||+|++||+...+|+.++. .|.+.|+++.
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~-----------------------------------------------vH~e~VWaL~ 262 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYI-----------------------------------------------VHKEGVWALQ 262 (735)
T ss_pred ecCCCceEEeeeccccceeeeEE-----------------------------------------------eccCceEEEe
Confidence 99999999999999888776543 5888899999
Q ss_pred EeCC--eEEEEECCCeEEEEeCCCC
Q 008939 493 FTQE--SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 493 fspd--~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+|+ .+.+|+.||.|..=|+...
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eCCCcceEEecCCCCcEEecccCCc
Confidence 9986 4899999999999888774
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=191.73 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=196.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
-..+..|.+++++++. ++.++++++.| +|+|||+.. ...+..+.-|.+.++++.|.+... ...|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEE
Confidence 3567789999999997 47999998888 999999998 448888888999999999999843 33799999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+|+... +...+. + +.|...|+.++.+|.+. +.++.+.|+.+++||+-.+ +....+.
T Consensus 111 iw~~~~--W~~~~s----l------K~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~G-r~a~v~~---------- 166 (362)
T KOG0294|consen 111 IWRVGS--WELLKS----L------KAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRG-RVAFVLN---------- 166 (362)
T ss_pred EEEcCC--eEEeee----e------cccccccceeEecCCCc-eEEEEcCCceeeeehhhcC-ccceeec----------
Confidence 999876 222221 1 24888899999999999 8889999999999999753 2111111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
+. ..-+.+.|+|.|.+++.+..+ .|-||.+.+..+...+.. ...+.|+.|. ++..|++|++
T Consensus 167 -------------L~---~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d 227 (362)
T KOG0294|consen 167 -------------LK---NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGD 227 (362)
T ss_pred -------------cC---CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecC
Confidence 11 223348999999999988876 589999987766544432 2457777776 5568999999
Q ss_pred CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|+.|++||.++..+...+.+|...|..+.+-- ++++ .+|++++.||.|++||+++.
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~-----~~~~------~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYT-----NPEH------EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEe-----cCCc------eEEEEeccCceEEEEEcccc
Confidence 99999999999999999999999999998532 1156 79999999999999999987
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=182.48 Aligned_cols=273 Identities=14% Similarity=0.175 Sum_probs=210.4
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+..|...++.+.|+.+ |.+|++++.|..+.+|--.+ ++.+-.. .+|.+.|+|+...-+.. .+++
T Consensus 6 l~GHERplTqiKyN~e---GDLlFscaKD~~~~vw~s~n-----GerlGty-------~GHtGavW~~Did~~s~-~liT 69 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNRE---GDLLFSCAKDSTPTVWYSLN-----GERLGTY-------DGHTGAVWCCDIDWDSK-HLIT 69 (327)
T ss_pred cccCccccceEEecCC---CcEEEEecCCCCceEEEecC-----Cceeeee-------cCCCceEEEEEecCCcc-eeee
Confidence 4456667778888887 88999999999999996543 3333222 25999999999999988 9999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----CeE
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYL 323 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-----g~v 323 (548)
|+.|.++++||+.++. .+..|+. ..+|..+.|+++|++++....+ +.|
T Consensus 70 GSAD~t~kLWDv~tGk--------------------------~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGK--------------------------QLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred ccccceeEEEEcCCCc--------------------------EEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 9999999999999732 2333332 2689999999999988877543 679
Q ss_pred EEEeCC-------CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCC
Q 008939 324 RVFDYS-------KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYW 395 (548)
Q Consensus 324 ~vwd~~-------~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~ 395 (548)
.++|++ ..++...+..+...++.+.|.|-+++|++|.+||.|.+||++++ +.+...+.|...|+.|+|+|
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-- 200 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-- 200 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC--
Confidence 999998 44557777778899999999999999999999999999999997 55667778999999999999
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 396 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
|. .++++++.|.+-++||.++-+++.++..
T Consensus 201 -----d~------T~FiT~s~Dttakl~D~~tl~v~Kty~t--------------------------------------- 230 (327)
T KOG0643|consen 201 -----DR------TYFITGSKDTTAKLVDVRTLEVLKTYTT--------------------------------------- 230 (327)
T ss_pred -----Cc------ceEEecccCccceeeeccceeeEEEeee---------------------------------------
Confidence 88 7999999999999999999888877765
Q ss_pred CceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEE--eCCCCC--------------ccccCCCCcEE--EecCCCCc
Q 008939 476 SPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIW--MRPGVA--------------ESQSSSSETVL--STSSKDKP 535 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW--~~~~~~--------------~~~~~~~~~v~--~~s~d~~~ 535 (548)
..||++.+++| |.++.++.....-+= +-+.++ ....+|-.++. +++|||+.
T Consensus 231 ---------e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 231 ---------ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred ---------cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 45677777777 344443322221111 111111 12336666665 89999999
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
-++|+..|-+
T Consensus 302 YsSGGEDG~V 311 (327)
T KOG0643|consen 302 YSSGGEDGYV 311 (327)
T ss_pred cccCCCCceE
Confidence 9999887643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=188.59 Aligned_cols=300 Identities=15% Similarity=0.233 Sum_probs=215.1
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEE--ecCCCCceEEEecCCCCCCceEEEEE
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSI--HFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~--~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
.+.+....-+|...|++++|+.||+++++.++| .|+||+++.-..+.-+.+ ...-+.++.++|.|+.+ -+++..
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~---s~vv~~ 151 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK---SVVVSV 151 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc---eEEEEE
Confidence 344556677999999999999999999999988 999999886322222222 22335889999999943 355555
Q ss_pred cC-CcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NS-GDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.. ..+++|.+..+. .+.-.....++.. -.+.|+..+-.+-...++. +|++++.|..|.+|++. ++.
T Consensus 152 ~~g~~l~vyk~~K~~--dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~------ 220 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKT--DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQL------ 220 (420)
T ss_pred ccCCEEEEEEeeecc--cCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cce------
Confidence 44 569999887632 2332222222211 1122566777777777777 99999999999999997 322
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC---CC-----eEEEeeeecCCce
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS---KE-----QLICGGKSYYGAL 344 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~---~~-----~~~~~~~~~~~~v 344 (548)
+...+..+..-+..+.||+|++|++++..-.|+||.+- .| ..+..+++|...|
T Consensus 221 -------------------L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 221 -------------------LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV 281 (420)
T ss_pred -------------------eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe
Confidence 22222223445668899999999999988889999873 22 2456789999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCc-------eeEEec----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDR-------KVVAWG----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~-------~~~~~~----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
..++|+++.+.+++.+.||.++|||.+-. +.+... ..-.+.-..+..+| +| .++.
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-------~g-------~~lA 347 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-------SG-------DSLA 347 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-------CC-------cEEE
Confidence 99999999999999999999999998531 222222 12223334789999 88 3455
Q ss_pred EeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
.+....|+++..++++....++. .|...|++|.|
T Consensus 348 ~s~gs~l~~~~se~g~~~~~~e~----------------------------------------------~h~~~Is~is~ 381 (420)
T KOG2096|consen 348 VSFGSDLKVFASEDGKDYPELED----------------------------------------------IHSTTISSISY 381 (420)
T ss_pred eecCCceEEEEcccCccchhHHH----------------------------------------------hhcCceeeEEe
Confidence 56667899999988876655544 58999999999
Q ss_pred eCCe-EEEEECCCeEEEEe
Q 008939 494 TQES-VLTVCREGHIKIWM 511 (548)
Q Consensus 494 spd~-l~t~s~Dg~I~iW~ 511 (548)
++++ .+..+.|..+++..
T Consensus 382 ~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 382 SSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cCCCcEEeeecceeeeeec
Confidence 9986 66667788999887
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=202.68 Aligned_cols=269 Identities=15% Similarity=0.175 Sum_probs=223.5
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.+|.+.|.|++=+|..-..+++|+.||.|++||+.. .+.+..++.|.+.|..++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------------------------R~~~~~f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------------------------RECIRTFKAHEGLVRGIC 116 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh--------------------------hhhhheeecccCceeeEE
Confidence 469999999999999855899999999999999986 567888999999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
++. ..+++++.|.+|+.|-+.- ..+.++.+ ...+..+.-+..+..+++|++ .|.|||.+-..++..+.--...|
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred ecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCce
Confidence 987 5789999999999999874 45666554 355777777777778899886 59999999888999988778889
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.++.|+| ... ..|++|+.|+.|.|||++++.++..+-..-..+.+++.|.. -.+..++.|..
T Consensus 191 ~svkfNp-------vET-----sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea------fnF~~a~ED~n 252 (433)
T KOG0268|consen 191 SSVKFNP-------VET-----SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA------FNFVAANEDHN 252 (433)
T ss_pred eEEecCC-------Ccc-----hheeeeccCCceEEEecccCCccceeeeeccccceecCccc------cceeecccccc
Confidence 9999998 432 58999999999999999999998887766666777887743 34567888899
Q ss_pred CceeecCCC-CceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccccCCC---CcEE--EecCCCCceEe
Q 008939 467 PSMRDVPKL-SPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSS---ETVL--STSSKDKPLLS 538 (548)
Q Consensus 467 ~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~~~~---~~v~--~~s~d~~~l~s 538 (548)
++.+|++.+ .|+..+++|...|.+|+|+|.+ +++||.|.+|||+....+.....-|. ..|. .+|.|.++|++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 999999876 5899999999999999999976 99999999999999887654443332 2233 78999999999
Q ss_pred eeccccc
Q 008939 539 SKVVTSS 545 (548)
Q Consensus 539 ~~~~g~~ 545 (548)
|...+++
T Consensus 333 GSdd~nv 339 (433)
T KOG0268|consen 333 GSDDGNV 339 (433)
T ss_pred cCCCcce
Confidence 9887553
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=211.01 Aligned_cols=272 Identities=17% Similarity=0.277 Sum_probs=209.8
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEE-EEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS-VTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~~ 243 (548)
.-+.+..|...+..+++.+. ..++.++.||++++|+-.. +....... ...+.+.|.+ +++.+..+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~----~~i~s~sRd~t~~vw~~~~------~~~l~~~~----~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG----VCIISGSRDGTVKVWAKKG------KQYLETHA----FEGPKGFIANSICYAESDK 71 (745)
T ss_pred eEEEeccCccchheeEecCC----eEEeecCCCCceeeeeccC------ccccccee----cccCcceeeccceeccccC
Confidence 34566778888877777664 3689999999999998654 22221110 1125566666 77776444
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
..+++|+.|.++.+|.+.. ..|+..+++|+..|.++....++. +++|+.|.++
T Consensus 72 ~~l~~g~~D~~i~v~~~~~--------------------------~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQ--------------------------AEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cceEeecccceEEEEecCC--------------------------CCchhhhhccccceeeeecCCcCc-eEecccccce
Confidence 4799999999999999876 578999999999999999888877 9999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++|-. +++...+++|...|.+++.-|++ .+++|+.|.+|++|.- ++.+.+|.+|.+.|+++++-| ++
T Consensus 125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-------~~- 191 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-------DS- 191 (745)
T ss_pred EEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-------CC-
Confidence 99976 56677799999999999999998 7899999999999976 778999999999999999998 65
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.|+||+.||.|++||+ +++++.+ +.+
T Consensus 192 ------~flScsNDg~Ir~w~~-~ge~l~~-----------------------------------------------~~g 217 (745)
T KOG0301|consen 192 ------HFLSCSNDGSIRLWDL-DGEVLLE-----------------------------------------------MHG 217 (745)
T ss_pred ------CeEeecCCceEEEEec-cCceeee-----------------------------------------------eec
Confidence 6999999999999999 6665543 346
Q ss_pred CCCCeeEEEEeC-C-eEEEEECCCeEEEEeCCCCCccccCCCCcEEEe--cCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQ-E-SVLTVCREGHIKIWMRPGVAESQSSSSETVLST--SSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fsp-d-~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~--s~d~~~l~s~~~~g~~ 545 (548)
|+.-|+++...+ + .++++++|+++|||+............-.+++. -++|+ |++|...|.+
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceE
Confidence 899999999444 4 499999999999999873323333333355532 35666 5555555443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=205.74 Aligned_cols=268 Identities=15% Similarity=0.190 Sum_probs=220.9
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|..+.|-++.. .|++|+.|..|++|++..+. ...+..+.+..+.|+.++|
T Consensus 173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k------------------------~~~~~tLaGs~g~it~~d~ 227 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEK------------------------SELISTLAGSLGNITSIDF 227 (459)
T ss_pred ccccccceeEEccCcc-hhhhcchhhhhhhhhcccch------------------------hhhhhhhhccCCCcceeee
Confidence 3889999999999977 89999999999999987532 2334455566688999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
.++++++++++.|+.+++|++...++..++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cn 306 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCN 306 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccccc
Confidence 9999999999999999999999999999999999999999999877779999999999999999988877765 455667
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCC
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAP 467 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~ 467 (548)
.|...+ ..++++..|+.|++||+++..++..+..+..+.++..+.++ ..+....-|..+
T Consensus 307 DI~~~~---------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g------~~lLsssRDdtl 365 (459)
T KOG0288|consen 307 DIVCSI---------------SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG------LELLSSSRDDTL 365 (459)
T ss_pred ceEecc---------------eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC------eEEeeecCCCce
Confidence 777655 57899999999999999999999999988888888888887 333344556677
Q ss_pred ceeecCCCCceEEeecC----CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc---CCCC-cEE--EecCCCCc
Q 008939 468 SMRDVPKLSPLVAHRVH----TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS---SSSE-TVL--STSSKDKP 535 (548)
Q Consensus 468 ~~~d~~~~~~~~~~~~h----~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~---~~~~-~v~--~~s~d~~~ 535 (548)
.+.|++.......+..- ...++.+.|+|+ ++++|+.||.|+||++.+++.+.. .+.. .+. +|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 77788777666665531 234899999997 599999999999999998874322 2222 455 78899999
Q ss_pred eEeeecc
Q 008939 536 LLSSKVV 542 (548)
Q Consensus 536 l~s~~~~ 542 (548)
|++++..
T Consensus 446 Llsadk~ 452 (459)
T KOG0288|consen 446 LLSADKQ 452 (459)
T ss_pred hhcccCC
Confidence 9999876
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=186.91 Aligned_cols=239 Identities=19% Similarity=0.316 Sum_probs=184.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
|.+|+++++|+.|+|+.++...+ .++... ..+|.++|..++|.. .|. +|++++.||.|.||....+ +
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~---s~ll~~------L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g-~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQ---SKLLAE------LTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENG-R 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCC---ceeeeE------ecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCC-c
Confidence 77899999999999999987321 122222 236999999999976 666 9999999999999997652 1
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCC-e--EEEeeeec
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKE-Q--LICGGKSY 340 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~-~--~~~~~~~~ 340 (548)
-+....+..|...|++++|-|. |-.|++++.||.|.|.+++.. . .......|
T Consensus 92 -----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 92 -----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred -----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 2334566778999999999994 678999999999999999754 2 23346789
Q ss_pred CCceEEEEEccC---C-----------CEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 341 YGALLCCAWSMD---G-----------KYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 341 ~~~v~~l~~spd---g-----------~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
.-.|+++.|.|. | +.|++|+.|..|+||+..+++ ...+|++|.++|+.++|.|. .|
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~------~g-- 220 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS------VG-- 220 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc------cC--
Confidence 999999999995 4 569999999999999998864 44568999999999999993 22
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
.....|+++++||++.||..+........ .+ +...
T Consensus 221 -l~~s~iAS~SqDg~viIwt~~~e~e~wk~-----------------------------------------tl---l~~f 255 (299)
T KOG1332|consen 221 -LPKSTIASCSQDGTVIIWTKDEEYEPWKK-----------------------------------------TL---LEEF 255 (299)
T ss_pred -CCceeeEEecCCCcEEEEEecCccCcccc-----------------------------------------cc---cccC
Confidence 12258999999999999987632111100 11 1124
Q ss_pred CCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 485 TEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 485 ~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+.+..+.|+..+ |+.++.|..|.+|.-.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 5789999999964 8888999999999844
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=186.64 Aligned_cols=274 Identities=15% Similarity=0.164 Sum_probs=199.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
.+.|..+.|+|. +..|++++.||.+++||+... .+..... |..++.+++|.++. .+++|+.|
T Consensus 13 ~d~IS~v~f~~~---~~~LLvssWDgslrlYdv~~~------~l~~~~~-------~~~plL~c~F~d~~--~~~~G~~d 74 (323)
T KOG1036|consen 13 EDGISSVKFSPS---SSDLLVSSWDGSLRLYDVPAN------SLKLKFK-------HGAPLLDCAFADES--TIVTGGLD 74 (323)
T ss_pred hhceeeEEEcCc---CCcEEEEeccCcEEEEeccch------hhhhhee-------cCCceeeeeccCCc--eEEEeccC
Confidence 457889999977 678999999999999999873 1111122 78999999999876 49999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
|.|+.+|+... ....+..|..+|.|+.+++....+++|+.|++|++||.+...
T Consensus 75 g~vr~~Dln~~---------------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 75 GQVRRYDLNTG---------------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred ceEEEEEecCC---------------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 99999999873 233455678999999999987889999999999999999765
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec--cCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.+..+.. ...|.|+... ++.|++|+.|..|.+||+++....... ..-+-.+++|++-| ++ .=
T Consensus 128 ~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-------n~------eG 191 (323)
T KOG1036|consen 128 VVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-------NG------EG 191 (323)
T ss_pred ccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-------CC------Cc
Confidence 5555543 3478887765 668999999999999999986543322 23456788999988 65 34
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
++.++-||.|.+=.++..+..+..+. +|-.-... ... ..---+|++
T Consensus 192 y~~sSieGRVavE~~d~s~~~~skky-------aFkCHr~~---------------------~~~------~~~~yPVNa 237 (323)
T KOG1036|consen 192 YVVSSIEGRVAVEYFDDSEEAQSKKY-------AFKCHRLS---------------------EKD------TEIIYPVNA 237 (323)
T ss_pred eEEEeecceEEEEccCCchHHhhhce-------eEEeeecc---------------------cCC------ceEEEEece
Confidence 78889999998877766533222111 11000000 000 001237999
Q ss_pred EEEeCC--eEEEEECCCeEEEEeCCCCCc-cccCCC-CcE--EEecCCCCceEeeec
Q 008939 491 LIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSS-ETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 491 l~fspd--~l~t~s~Dg~I~iW~~~~~~~-~~~~~~-~~v--~~~s~d~~~l~s~~~ 541 (548)
|+|+|- .|+||+.||.|.+||+..++. .+.... ..| ++|+.||..||.+..
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999995 499999999999999887663 333322 223 388899999998854
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=200.12 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=206.5
Q ss_pred CEEEEec-CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 143 TYIIFNV-GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 143 ~~l~~~~-~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
.+++++. .+ .|.+|.+.... .......-|..+.|++-+|. |.+|+.|+-.|.||+|.+.+ ++.+...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~---G~~l~ag~i~g~lYlWelss-----G~LL~v~- 119 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNL---GYFLLAGTISGNLYLWELSS-----GILLNVL- 119 (476)
T ss_pred hheeeecccCccccccccCchh--hhhhhcccccceeeeecCCC---ceEEEeecccCcEEEEEecc-----ccHHHHH-
Confidence 4455543 44 89999998633 44333336778999999999 88999999999999999988 3332211
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
..|-..|+|+.|+.|+. +|++|+.||.|.+|++..--... ....-.|++.|..|.-
T Consensus 120 ------~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~-----------------~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 120 ------SAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSAD-----------------NDHSVKPLHIFSDHTL 175 (476)
T ss_pred ------HhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccc-----------------cCCCccceeeeccCcc
Confidence 13889999999999999 99999999999999986411100 0113578999999999
Q ss_pred CeEEEEECCC--CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC------
Q 008939 301 SINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED------ 372 (548)
Q Consensus 301 ~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~------ 372 (548)
+|+++...+. ..+|++++.|.++++||+..+.++.++. ....+.+++.+|-+..+++|+++|.|.+.++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 9999998875 3589999999999999999999988765 457799999999999999999999999988743
Q ss_pred ----------ceeEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee-cCCC
Q 008939 373 ----------RKVVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR-RGPL 439 (548)
Q Consensus 373 ----------~~~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~-~~~~ 439 (548)
+..+..+.||.+ .|+|++.+- || .+|++|+.||.|+|||+.+.++++++. ...+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-------Dg------tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAIST-------DG------TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP 321 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEec-------Cc------cEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence 224556678988 999999998 99 899999999999999999999999887 5567
Q ss_pred CCCceecC
Q 008939 440 GGSPTFST 447 (548)
Q Consensus 440 ~~~~~~~~ 447 (548)
++.+.+.+
T Consensus 322 VtnL~i~~ 329 (476)
T KOG0646|consen 322 VTNLQINP 329 (476)
T ss_pred cceeEeec
Confidence 77776633
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=194.89 Aligned_cols=247 Identities=17% Similarity=0.215 Sum_probs=200.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCC---------------CeEEE-ecCCCCceEEEecCCCCC
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKD---------------PIKSI-HFSNSNPVCHAFDQDAKD 187 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~---------------~i~~~-~~~~~~~~~~~~~p~~~~ 187 (548)
-...|.-++++++++|++++.+.++.+ +|.=|++.++... ++..- ..|...+.|++.+++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--- 213 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--- 213 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC---
Confidence 345789999999999999999998887 9999998776521 11111 145668899999999
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+.+|++|..|..|.||+.++. ..+. ....|.+.|.+++|-.... .|++++.|..|++|+++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~-----ehv~-------~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~----- 275 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL-----EHVK-------VFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQ----- 275 (479)
T ss_pred CcEEEecCCCceEEEecCccc-----chhh-------cccccccceeeeeeecCcc-ceeeeecCCceEEEehhH-----
Confidence 889999999999999999872 1111 1235899999999987666 899999999999999986
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
...+..+.+|+..|.++.-..-++.+-+|+.|+++++|++. .+....+.++.+.+-|+
T Consensus 276 ---------------------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv 333 (479)
T KOG0299|consen 276 ---------------------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCV 333 (479)
T ss_pred ---------------------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeE
Confidence 34567778899999999888777777778899999999995 33444678888899999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CC-----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GH-----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h-----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
+|-.+ ..+++|+.||.|.+|++.+.+++.+.. +| ..||++|+..| .. .++++++
T Consensus 334 ~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-------~s------dL~asGS 399 (479)
T KOG0299|consen 334 AFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-------GS------DLLASGS 399 (479)
T ss_pred EEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-------cC------ceEEecC
Confidence 99865 578999999999999999988776553 22 23999999998 55 6999999
Q ss_pred CCCeEEEEECCCC
Q 008939 416 QDTRLLLWDLEMD 428 (548)
Q Consensus 416 ~Dg~i~lwd~~~~ 428 (548)
.+|+|+||-+..+
T Consensus 400 ~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 400 WSGCVRLWKIEDG 412 (479)
T ss_pred CCCceEEEEecCC
Confidence 9999999998876
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=212.23 Aligned_cols=235 Identities=13% Similarity=0.190 Sum_probs=186.2
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+|+|.....++|++++..|.|.+||+.... +...+..|..|+..+++++|++
T Consensus 87 ~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------------------rnk~l~~f~EH~Rs~~~ldfh~ 143 (839)
T KOG0269|consen 87 FYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------------------RNKLLTVFNEHERSANKLDFHS 143 (839)
T ss_pred eeehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------cchhhhHhhhhccceeeeeecc
Confidence 34577899997777799999999999999998621 2344567788999999999998
Q ss_pred -CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCe
Q 008939 310 -DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWV 386 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V 386 (548)
...+|++|++||+|++||++..+-..++.+....|+.++|+| .+..++++.+.|.+++||++.. ++...+.+|.++|
T Consensus 144 tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 567899999999999999999888888888888999999999 4568999999999999999875 5677888999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.++.|+| ++ .+|||||.|+.|+|||+...+.-...
T Consensus 224 ~c~nwhP-------nr------~~lATGGRDK~vkiWd~t~~~~~~~~-------------------------------- 258 (839)
T KOG0269|consen 224 LCLNWHP-------NR------EWLATGGRDKMVKIWDMTDSRAKPKH-------------------------------- 258 (839)
T ss_pred EEEeecC-------CC------ceeeecCCCccEEEEeccCCCcccee--------------------------------
Confidence 9999999 88 79999999999999999865432111
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE--CCCeEEEEeCCCCCcccc---CCCCcEE--Eec-CCCCc
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC--REGHIKIWMRPGVAESQS---SSSETVL--STS-SKDKP 535 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s--~Dg~I~iW~~~~~~~~~~---~~~~~v~--~~s-~d~~~ 535 (548)
+. .-..+|..|.|.|++ |++++ .|-.|+|||+...-.+.. .|...+. +|- .|-..
T Consensus 259 -------------tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 259 -------------TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred -------------EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee
Confidence 11 124689999999974 77776 788999999877653322 3444444 332 34456
Q ss_pred eEeeecccccc
Q 008939 536 LLSSKVVTSSY 546 (548)
Q Consensus 536 l~s~~~~g~~~ 546 (548)
|.+..+.|.++
T Consensus 325 l~s~sKD~tv~ 335 (839)
T KOG0269|consen 325 LWSCSKDGTVL 335 (839)
T ss_pred eEeecCccHHH
Confidence 77777666654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=194.61 Aligned_cols=278 Identities=16% Similarity=0.111 Sum_probs=206.3
Q ss_pred ecCC--eEEEEEccCCCCCCeEEEecC-CCC-ceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeee
Q 008939 148 NVGD--AIFISDLNSQDKDPIKSIHFS-NSN-PVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 148 ~~~d--~v~vwd~~~~~~~~i~~~~~~-~~~-~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+.+ ++.+||++++. .+.++... ... -.+-+.. ..+++++.. ...|.+|.+....+...+ .
T Consensus 13 sS~d~~~~~~~dl~TGt--~~~~ykg~~~a~~~sl~~l~-----~~yllsaq~~rp~l~vw~i~k~~~~~q~-~------ 78 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGT--SLLQYKGSYLAQAASLTALN-----NEYLLSAQLKRPLLHVWEILKKDQVVQY-I------ 78 (476)
T ss_pred cCCCCcceeEEecCCCc--eeEEecCcccccchhhhhhc-----hhheeeecccCccccccccCchhhhhhh-c------
Confidence 4445 79999999976 33333322 111 1111222 235555544 346889988763222211 1
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
...++|.+++-+|.|. +|+.|...|+||+|.+.+ ...+..|..|=..|
T Consensus 79 -----v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelss--------------------------G~LL~v~~aHYQ~I 126 (476)
T KOG0646|consen 79 -----VLPGPVHALASSNLGY-FLLAGTISGNLYLWELSS--------------------------GILLNVLSAHYQSI 126 (476)
T ss_pred -----ccccceeeeecCCCce-EEEeecccCcEEEEEecc--------------------------ccHHHHHHhhccce
Confidence 2578899999999998 777777999999999997 35567778888999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEeCC---------CCeEEEeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECC
Q 008939 303 NSIAFSTDGTYLATVGRDGYLRVFDYS---------KEQLICGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSME 371 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~dg~v~vwd~~---------~~~~~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~ 371 (548)
+|+.|+-|+.+|++++.||.|.+|++. +-+.++.+..|.-+|+.+...+-| .+|++.+.|.++++||+.
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 999999999999999999999999873 235678889999999999887653 589999999999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.+.++..+. ....+.+++.+| .+ ..+..|+.+|.|.+.++..-..... ...
T Consensus 207 ~g~LLlti~-fp~si~av~lDp-------ae------~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~---------- 257 (476)
T KOG0646|consen 207 LGVLLLTIT-FPSSIKAVALDP-------AE------RVVYIGTEEGKIFQNLLFKLSGQSA-----GVN---------- 257 (476)
T ss_pred cceeeEEEe-cCCcceeEEEcc-------cc------cEEEecCCcceEEeeehhcCCcccc-----ccc----------
Confidence 999888876 678899999999 66 7899999999999998865321000 000
Q ss_pred cccCCeeeecccCCCCceeecCCCCceEEeecCCC--CeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE--PLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~--~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+ ......+..+.+|.+ .|++++.+-|+ |++|+.||+++|||+....
T Consensus 258 ---------------~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 258 ---------------QKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ---------------cccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 0000 012234556678988 99999999985 9999999999999987765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-21 Score=184.77 Aligned_cols=381 Identities=15% Similarity=0.191 Sum_probs=257.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
...+.+..+.|.|.+..++...++ .+++|+++.+. .++... ..+..++|++|.+++ .+++|.++|.|.|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~--l~k~~~~fek~ekk~Vl~v~F~eng----dviTgDS~G~i~I 271 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS--LVKRQGIFEKREKKFVLCVTFLENG----DVITGDSGGNILI 271 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--eEEEeeccccccceEEEEEEEcCCC----CEEeecCCceEEE
Confidence 446778899999998888877777 99999998765 222221 133689999999974 4899999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc--------c
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI--------K 274 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--------~ 274 (548)
|+... .++....+ .|.+.|.+++...+|. |++|+.|..|..||-+-.......+|.. +
T Consensus 272 w~~~~------~~~~k~~~------aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 272 WSKGT------NRISKQVH------AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred EeCCC------ceEEeEee------ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence 99865 22221111 4899999999999996 7779999999999943221111111111 1
Q ss_pred ccceeeeecCC------CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEE
Q 008939 275 DQTQFSVAHPR------YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~ 348 (548)
....+.+...+ ..........++|......++.+|+...+++++.|+.+++|+ ..+++.+.. ...++.|++
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~ 414 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECAD 414 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEee
Confidence 11112222111 012333455678989999999999999999999999999999 556665544 457899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|+|.| .+|.|...|.-.+.|.++...+..-.. +.++++|+|+| +| .+|+.++.|+.|.||-+..+
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-------~G------~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-------DG------AFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-------CC------CEEEEecCCCeEEEEEECCC
Confidence 99999 999999999999999999777766554 89999999999 99 79999999999999998765
Q ss_pred eEEee-ee--cCCCCCCceecCCCC---ccccCCeeeecccCC---CCceeecCCC--CceEEe----ecCCCCeeEEEE
Q 008939 429 EIVVP-LR--RGPLGGSPTFSTGSQ---SAHWDNVCPVGTLQP---APSMRDVPKL--SPLVAH----RVHTEPLSGLIF 493 (548)
Q Consensus 429 ~~~~~-~~--~~~~~~~~~~~~~~~---~~~~d~~~~~g~~~~---~~~~~d~~~~--~~~~~~----~~h~~~V~~l~f 493 (548)
..... +. ...++..+.++++++ ...-|..+..|.-.. ...+.|++-. .+..-+ ..|...|..++-
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~r 559 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVAR 559 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhh
Confidence 43322 22 226677788888875 122222222221110 1112222111 111111 123334444444
Q ss_pred eC--CeEEEEECCCeEEEEeCCCCCc-----cccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 494 TQ--ESVLTVCREGHIKIWMRPGVAE-----SQSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 494 sp--d~l~t~s~Dg~I~iW~~~~~~~-----~~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
+. +.+++|.+.|+|+++..|-... +...|...+. +|.-++..|++.....|++
T Consensus 560 s~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~ 621 (626)
T KOG2106|consen 560 SHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIM 621 (626)
T ss_pred hhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEE
Confidence 44 3488888889999999775442 3335666665 7777777777666666554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=180.85 Aligned_cols=240 Identities=19% Similarity=0.250 Sum_probs=191.3
Q ss_pred CceeEEeCCCCCEEEEecC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYIIFNVG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.+-.+.|-.....++.++. | +||.-++.+ .+-++.+..|...|..+..+|- +..+++++.|++|++||++..
T Consensus 58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--NkylRYF~GH~~~V~sL~~sP~---~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--NKYLRYFPGHKKRVNSLSVSPK---DDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred cccEEEEecCCceEEEccCCCCCceEEEEeec--CceEEEcCCCCceEEEEEecCC---CCeEEecccCCeEEeeEecCC
Confidence 4456677665566665554 3 999999998 4599999999999999999999 678999999999999999962
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeeecCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+..... +...-..++|.|+|- +||++...+.|++||++.-++ +...+....
T Consensus 133 ------~cqg~l--------~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~------------- 184 (311)
T KOG1446|consen 133 ------KCQGLL--------NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITD------------- 184 (311)
T ss_pred ------CCceEE--------ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCC-------------
Confidence 221111 344456789999998 888888888999999987422 222221110
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce---EEEEEccCCCEEEEEeCCCe
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL---LCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v---~~l~~spdg~~l~sgs~dg~ 364 (548)
......+.+.|+|||++|+.++..+.+.+.|.-+|..+.++..+...- ....|+||++++++|+.||.
T Consensus 185 ---------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 185 ---------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred ---------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 113678899999999999999999999999999999998888776543 57789999999999999999
Q ss_pred EEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 365 VQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|++|+++++..+..+++ +..++.++.|+| ++..-++.+..+.+|=....
T Consensus 256 i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP---------------~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 256 IHVWNLETGKKVAVLRGPNGGPVSCVRFNP---------------RYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred EEEEEcCCCcEeeEecCCCCCCccccccCC---------------ceeeeeecCceEEEEecccc
Confidence 99999999999999998 799999999999 45555566788999976543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=181.13 Aligned_cols=245 Identities=15% Similarity=0.204 Sum_probs=182.0
Q ss_pred CCCCceeEEeCCCCCEEE-EecCC-eEEEEEccCC-CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 129 SSTSMTNTNFDGKGTYII-FNVGD-AIFISDLNSQ-DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~-~~~~d-~v~vwd~~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
-..+|..++|+|....++ +++=| +||+|+++.. ...+ +...-++..+.|++|+.+ |..+++|+.|+++++|||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsdd---gskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDD---GSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccC---CceEEeeccCCceEEEEc
Confidence 457788999999544444 55545 9999999873 3333 445557889999999998 788999999999999999
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+. ++.... .|..+|.++.|.+... ..|++|+.|.+|+.||++..
T Consensus 102 ~S~------Q~~~v~-------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--------------------- 147 (347)
T KOG0647|consen 102 ASG------QVSQVA-------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--------------------- 147 (347)
T ss_pred cCC------Ceeeee-------ecccceeEEEEecCCCcceeEecccccceeecccCCC---------------------
Confidence 872 222222 2899999999987654 37899999999999999862
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCCCEEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
+++..++.. +.++++.. -..+++++..++.|.+|+++.+...... ....-.++|++..+|.+..+.|+-+
T Consensus 148 -----~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 148 -----NPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred -----Ceeeeeecc-ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 334333332 44555544 3347888889999999999866432211 1123458899999999888999999
Q ss_pred CeEEEEECCCc--eeEEeccCCC---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 363 DLVQVWSMEDR--KVVAWGEGHN---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 363 g~I~vwd~~~~--~~~~~~~~h~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
|.+.|..++.+ +.-..|+.|. ..|..|+|+| .- ..|+++|.||...+||-.....+
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-------~h------gtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-------VH------GTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-------cc------ceEEEecCCceEEEecchhhhhh
Confidence 99999999886 3334555665 2578899999 32 38999999999999997765544
Q ss_pred e
Q 008939 432 V 432 (548)
Q Consensus 432 ~ 432 (548)
.
T Consensus 287 k 287 (347)
T KOG0647|consen 287 K 287 (347)
T ss_pred h
Confidence 3
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=199.85 Aligned_cols=269 Identities=20% Similarity=0.220 Sum_probs=210.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec--CCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC--QGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~ 306 (548)
|..-|..+.++.... .+++|+. |.|+|||+...+. ..|+..+..- ..-|.++.
T Consensus 418 HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~-----------------------k~PvsqLdcl~rdnyiRSck 472 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGN-----------------------KSPVSQLDCLNRDNYIRSCK 472 (705)
T ss_pred cCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCC-----------------------CCccccccccCcccceeeeE
Confidence 677788888888877 7888775 8899999976432 2223222221 36788999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~ 384 (548)
+.|||+.|++|+.-.+|.|||+...... ..+..-.-...+++.+||.+..+++..||.|.|||+++...+..|+||.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 9999999999999999999999865443 22333334567889999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccC
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
.+.||..++ || +.|-+|+-|.+|+.||+++++.++......++.++-..+.+ ..+.+|-..
T Consensus 553 GascIdis~-------dG------tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~------dWlavGMen 613 (705)
T KOG0639|consen 553 GASCIDISK-------DG------TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG------DWLAVGMEN 613 (705)
T ss_pred CceeEEecC-------CC------ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCc------cceeeeccc
Confidence 999999999 99 89999999999999999999988776665666666665554 334555555
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC-ccccCCCCcEE--EecCCCCceEee
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA-ESQSSSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~-~~~~~~~~~v~--~~s~d~~~l~s~ 539 (548)
..+.+......+ ...+..|+..|.++.|.+- .+++.+.|..+..|..+-+. ..+......|+ .||.|+++|++|
T Consensus 614 s~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 614 SNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred CcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEec
Confidence 444444443332 3344568999999999995 49999999999999988665 55566667777 899999999998
Q ss_pred ecc
Q 008939 540 KVV 542 (548)
Q Consensus 540 ~~~ 542 (548)
.-.
T Consensus 693 SGd 695 (705)
T KOG0639|consen 693 SGD 695 (705)
T ss_pred CCC
Confidence 543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=189.18 Aligned_cols=241 Identities=16% Similarity=0.212 Sum_probs=197.7
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.++.+...+....+.+++.| ++.++|...++ .+..+..|.-.++.+.|+|+ ...+++++.|-.|++|......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~---~~~v~~aSad~~i~vws~~~~s- 294 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKD---LDTVITASADEIIRVWSVPLSS- 294 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccc---hhheeecCCcceEEeecccccc-
Confidence 34556666666788888888 99999999854 88888999999999999999 6679999999999999987521
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
...+ ...|..+|+.+..+|.++ +|++++.|++..+.|++.+....
T Consensus 295 --~~~~---------~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt----------------------- 339 (506)
T KOG0289|consen 295 --EPTS---------SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLT----------------------- 339 (506)
T ss_pred --Cccc---------cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEE-----------------------
Confidence 1111 113899999999999999 99999999999999998732110
Q ss_pred CeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 291 PIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 291 ~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
..-. ...-.+++.+|+|||.+|.+|..|+.|+|||+..+..+..|.+|.++|..++|+.+|-+|+++.+|+.|++||
T Consensus 340 --~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 340 --VVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred --EEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 0000 1124589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 370 MEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 370 ~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++..+...++.- ....|..+.|++ .| .+|+.++.|=+|++++-.+.
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~-------SG------t~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQ-------SG------TYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred ehhhcccceeeccccccceeEEEcC-------CC------CeEEeecceeEEEEEecccc
Confidence 998887776653 234799999998 88 78888888877777774443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=200.38 Aligned_cols=305 Identities=17% Similarity=0.222 Sum_probs=228.2
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
++-+.+|.+.|.+++.+|.|.+|+.++.| +|+||.+.++. +|+.+.+. +.|.|++|+|.+. -..|+++... .+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~d-~~I~~vaw~P~~~-~~vLAvA~~~-~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQFD-SEIRSVAWNPLSD-LCVLAVAVGE-CVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEeec-ceeEEEEecCCCC-ceeEEEEecC-ceE
Confidence 67788999999999999999999999998 99999999966 99999865 4999999999964 3344444443 465
Q ss_pred EEEeeec---ccccccceee-----------eeeeccC----Cc-------ccCcceEEEEEecCCCcEEEEEeCC---C
Q 008939 202 SVSLRQQ---LQDVGKKLVG-----------AHHYNKD----GS-------VNNSRCTSVTWVPGGDGAFVVGHAD---G 253 (548)
Q Consensus 202 iwdl~~~---~~~~~~~~~~-----------~~~~~~~----~~-------~~~~~v~~l~~~p~~~~~l~s~~~d---g 253 (548)
|.+..-. .....+.++. ...|.+. .. .|...|+.|.|+..|. +|++...+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 5553211 0001111111 1122222 11 2778999999999999 88887654 4
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|.|+++.+... .. -|+...+.|.++.|+|...+|++++. ..|+|||+..+++
T Consensus 547 ~VliHQLSK~~s-Q~-------------------------PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel 599 (733)
T KOG0650|consen 547 SVLIHQLSKRKS-QS-------------------------PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL 599 (733)
T ss_pred eEEEEecccccc-cC-------------------------chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH
Confidence 688999876211 11 12222378999999999888888875 5799999998888
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
+..+......|..++.+|.|..|+.|+.|+.++.+|+.-. ++.++++-|...|+.|+||+ .= .+|+
T Consensus 600 vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-------ry------PLfa 666 (733)
T KOG0650|consen 600 VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-------RY------PLFA 666 (733)
T ss_pred HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-------cc------ceee
Confidence 8877777778999999999999999999999999999864 67888999999999999998 22 6899
Q ss_pred EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC----e
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP----L 488 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~----V 488 (548)
+|+.||.+.|+.-.--. .+. .-+...|+..+++|... |
T Consensus 667 s~sdDgtv~Vfhg~VY~---Dl~-----------------------------------qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 667 SGSDDGTVIVFHGMVYN---DLL-----------------------------------QNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred eecCCCcEEEEeeeeeh---hhh-----------------------------------cCCceEeeeeccCceeecccce
Confidence 99999999988532100 000 00223467778888665 8
Q ss_pred eEEEEeCC--eEEEEECCCeEEEEe
Q 008939 489 SGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 489 ~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
..+.|+|. .|++++.||+|++|.
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeecccCCCceEEecCCCceEEeeC
Confidence 89999997 499999999999993
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=187.39 Aligned_cols=289 Identities=14% Similarity=0.235 Sum_probs=224.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVS 204 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwd 204 (548)
....+.|+++.|+|.-..+++++-| +++||.++......++.+.+....+.+.+|.|+ |. .+++++.....+.||
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~---G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN---GHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC---CceEEEecccceEEEEee
Confidence 3446788999999999999998877 999999998777889999999999999999998 55 899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+......+++. ......+.....+|+++ +|+..+..|.|.+....+. ..
T Consensus 287 le~ak~~k~~~~~---------g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~-el------------------ 337 (514)
T KOG2055|consen 287 LETAKVTKLKPPY---------GVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTK-EL------------------ 337 (514)
T ss_pred ccccccccccCCC---------CcccchhheeEecCCCC-eEEEcccCceEEeehhhhh-hh------------------
Confidence 9873222222221 11345677888899999 9999999999999987762 21
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce--EEEEEccCCCEEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL--LCCAWSMDGKYILTGGED 362 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~l~~spdg~~l~sgs~d 362 (548)
+..++. .+.|..++|+.|++.|+.++.+|.|.+||++...++..+... +.| ++++.++++.+||+|++.
T Consensus 338 -------i~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 338 -------ITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred -------hheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCc
Confidence 111221 378999999999999999999999999999999888887643 333 567778999999999999
Q ss_pred CeEEEEECCC------ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeee
Q 008939 363 DLVQVWSMED------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 363 g~I~vwd~~~------~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~ 434 (548)
|.|.|||.++ .+++..+..-...|+.|.|+| |+ .+|+.++ .+..++|-.+.+...-..+
T Consensus 409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-------d~------qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-------DA------QILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-------ch------hhhhhhhhccccceEEEeccceeeeccC
Confidence 9999999764 357777777788999999999 88 5666555 4667777766554322211
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
.. . ....+.|++|+|+|. +|+.|..+|.+.+|.+
T Consensus 476 P~--------------------------------------~------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PT--------------------------------------S------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CC--------------------------------------C------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 11 0 012356999999996 3899999999999987
Q ss_pred C
Q 008939 513 P 513 (548)
Q Consensus 513 ~ 513 (548)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=212.87 Aligned_cols=227 Identities=17% Similarity=0.304 Sum_probs=196.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|...|.|+..-..++ .+++|+.|..+-+|.+.+ -+++..+.+|+.+|.++.|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~k--------------------------p~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGK--------------------------PNAITSLTGHESPIESLTFD 79 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccC--------------------------CchhheeeccCCcceeeecC
Confidence 788888888855556 899999999999999875 34556688999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
++..+|++|+.+|+|++||+++.+.+.++.+|...+.++.|+|-+.+.+.|+.|..+++||++...|.+.+.+|...|..
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV 159 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
+.|+| +| +++++++.|..++|||+..|+.+..+
T Consensus 160 l~lsP-------~G------r~v~~g~ed~tvki~d~~agk~~~ef---------------------------------- 192 (825)
T KOG0267|consen 160 LRLSP-------DG------RWVASGGEDNTVKIWDLTAGKLSKEF---------------------------------- 192 (825)
T ss_pred EeecC-------CC------ceeeccCCcceeeeeccccccccccc----------------------------------
Confidence 99999 99 89999999999999999988766544
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccC--CCCcEE--EecCCCCceEeeecc
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSS--SSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~--~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
..|++.|..+.|+|. .+++|+.|++|++||+++-+..-.. ....|. +|.|+++.+.+|-+.
T Consensus 193 -------------~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 193 -------------KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -------------ccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 458899999999995 3889999999999999865432222 223333 788999888877543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=183.20 Aligned_cols=204 Identities=18% Similarity=0.303 Sum_probs=177.6
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.+|++.|+.++-....+ ++.+++.|.+.+||.+++ ...+..+.+|.+.|+++.
T Consensus 145 ~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es--------------------------g~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES--------------------------GACLATYTGHTGSVNSIK 197 (481)
T ss_pred cccccceeeehhhcCCc-ceeecccccceeEEeecc--------------------------ccceeeecccccceeeEE
Confidence 35899999999888777 999999999999999997 345777889999999999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCC------C----------------------------------CeEEEeeeecCCceEE
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYS------K----------------------------------EQLICGGKSYYGALLC 346 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~------~----------------------------------~~~~~~~~~~~~~v~~ 346 (548)
|++.+.++++++.|++-.||... . ..+++.+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99999999999999999999621 0 0134667889999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+.|-..|+.+++++.|.+..+||+++++++..+.||+...+.++-+| .. +++++.+.|.+.++||++
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-------tQ------rLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-------TQ------RLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-------cc------eEEEEeccCceeEeccch
Confidence 99999999999999999999999999999999999999999999998 66 789999999999999998
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCC
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREG 505 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg 505 (548)
.. + ..+..|++|.+.|+++.|..+ .++++++|.
T Consensus 345 ea--I--------------------------------------------~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr 378 (481)
T KOG0300|consen 345 EA--I--------------------------------------------QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR 378 (481)
T ss_pred hh--c--------------------------------------------ceeeeecccccceeEEEEecCCceeecCCCc
Confidence 32 2 224467899999999999986 599999999
Q ss_pred eEEEEeCCCCC
Q 008939 506 HIKIWMRPGVA 516 (548)
Q Consensus 506 ~I~iW~~~~~~ 516 (548)
+|++||+..-.
T Consensus 379 TvKvWdLrNMR 389 (481)
T KOG0300|consen 379 TVKVWDLRNMR 389 (481)
T ss_pred eEEEeeecccc
Confidence 99999976543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-20 Score=182.62 Aligned_cols=287 Identities=16% Similarity=0.179 Sum_probs=200.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEeeecccccccceeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
..++++..+ .+++||+.++. .+..+..+ ..+.+++|+|+ +..+ +++..++.|++||+.+. + .....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~-~~~~~l~~~~d---g~~l~~~~~~~~~v~~~d~~~~-----~-~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE--VTRTFPVG-QRPRGITLSKD---GKLLYVCASDSDTIQVIDLATG-----E-VIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc--eEEEEECC-CCCCceEECCC---CCEEEEEECCCCeEEEEECCCC-----c-EEEec
Confidence 455666666 99999998754 66666643 45788999998 6555 56677899999998762 1 11111
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. ....+..++|+|+++.+++++..|+.|++||+.... .+..+.. ..
T Consensus 70 ~-------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--------------------------~~~~~~~-~~ 115 (300)
T TIGR03866 70 P-------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRK--------------------------VLAEIPV-GV 115 (300)
T ss_pred c-------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--------------------------EEeEeeC-CC
Confidence 1 122356789999998444455678999999997521 1111211 13
Q ss_pred CeEEEEECCCCCEEEEEECCC-eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 301 SINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
.+.+++|+|++++++++..++ .+.+||..+++.+..... .....+++|+|++++|+++ ..++.|++||+++++.+..
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 467899999999999988765 567889988877655432 3346789999999988655 4589999999999887766
Q ss_pred ccCCC-----C--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 379 GEGHN-----S--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 379 ~~~h~-----~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
+..+. . ....++|+| ||. ..+++.+.++.|.+||+++++.+..+........+.|++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~-------dg~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~- 261 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTK-------DGK-----TAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK- 261 (300)
T ss_pred eeecccccccccCCccceEECC-------CCC-----EEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC-
Confidence 54221 1 234688998 882 234555667789999999988877665545667778877763
Q ss_pred cccCCeeee-cccCCCCceeecCCCCceEEeecCCCCeeEEEEeC
Q 008939 452 AHWDNVCPV-GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ 495 (548)
Q Consensus 452 ~~~d~~~~~-g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp 495 (548)
.+.. ...++.+.+||+...+.+..++.+. ..+.|+|+|
T Consensus 262 -----~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~ 300 (300)
T TIGR03866 262 -----YLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVVRP 300 (300)
T ss_pred -----EEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEeCC
Confidence 3333 3457788999999999888887654 448888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=176.20 Aligned_cols=275 Identities=12% Similarity=0.191 Sum_probs=190.2
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVG 249 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~ 249 (548)
|.+-+.|+.|++- |+.+++|+.|+.|.|||.+.. ...-.+.. .-+.|.+.|..|.|.+ .|+ +++++
T Consensus 12 h~DlihdVs~D~~---GRRmAtCSsDq~vkI~d~~~~--s~~W~~Ts------~Wrah~~Si~rV~WAhPEfGq-vvA~c 79 (361)
T KOG2445|consen 12 HKDLIHDVSFDFY---GRRMATCSSDQTVKIWDSTSD--SGTWSCTS------SWRAHDGSIWRVVWAHPEFGQ-VVATC 79 (361)
T ss_pred Ccceeeeeeeccc---CceeeeccCCCcEEEEeccCC--CCceEEee------eEEecCCcEEEEEecCccccc-eEEEE
Confidence 5677899999998 889999999999999997541 11111111 2235899999999965 345 99999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd 327 (548)
+.|+++.||....... ... ...-.....+......|+.+.|.| -|-.||+++.||.||||+
T Consensus 80 S~Drtv~iWEE~~~~~-~~~----------------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSE-EAH----------------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred ecCCceeeeeeccccc-ccc----------------cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 9999999998742110 000 000112233344458999999999 477899999999999998
Q ss_pred CCCC------eEEEeee-------ecCCceEEEEEccC---CCEEEEEeCC-----CeEEEEECCCc----eeEEeccCC
Q 008939 328 YSKE------QLICGGK-------SYYGALLCCAWSMD---GKYILTGGED-----DLVQVWSMEDR----KVVAWGEGH 382 (548)
Q Consensus 328 ~~~~------~~~~~~~-------~~~~~v~~l~~spd---g~~l~sgs~d-----g~I~vwd~~~~----~~~~~~~~h 382 (548)
.-.- .+...++ .+..+..|+.|+|. .++||+|+.+ +.+.||..... ..+.++.+|
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 7432 2223333 35567889999974 3578888766 47888876543 356778899
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..+|+.|+|.| +- .....+|++++.|| |+||.++..... ++.+ .. ..++.
T Consensus 223 ~dpI~di~wAP-------n~--Gr~y~~lAvA~kDg-v~I~~v~~~~s~--i~~e-e~----~~~~~------------- 272 (361)
T KOG2445|consen 223 TDPIRDISWAP-------NI--GRSYHLLAVATKDG-VRIFKVKVARSA--IEEE-EV----LAPDL------------- 272 (361)
T ss_pred CCcceeeeecc-------cc--CCceeeEEEeecCc-EEEEEEeeccch--hhhh-cc----cCCCC-------------
Confidence 99999999999 43 23447899999999 999998753311 1100 00 00000
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
+.++ ..+.+..+..|.+.|..+.|.-.+ |.+.+.||+||+|..
T Consensus 273 ------~~~l-~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 273 ------MTDL-PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred ------cccc-ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 0010 123455667899999999999865 889999999999984
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=185.56 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=187.8
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee--ee--eeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG--AH--HYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~--~~--~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
..+..+.-++-+. ..+.++-+..|.|+||++...++.....-.. .. ...-...+|+..=+.|+|+|-....|++|
T Consensus 152 g~~NRvr~~~~~~-~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 152 GGINRVRVSRLGN-EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred cccceeeecccCC-cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 3445555555421 4466667778999999998754432111100 00 00011234888889999999555569999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~ 328 (548)
..-+.|++|...+ +.-... .. -+-+|+.+|..++||| ....|++|+.||+|+|||+
T Consensus 231 Dc~~~I~lw~~~~-g~W~vd-------------------~~---Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 231 DCVKGIHLWEPST-GSWKVD-------------------QR---PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred ccccceEeeeecc-Cceeec-------------------Cc---cccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 9999999999876 221110 11 1334789999999999 4568999999999999999
Q ss_pred CCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---ceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 329 SKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 329 ~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
+.+ .++.. +.|.+.|+.|.|+.+-.+||+|+.||+++|||+++ +++++.|+-|..+|++|.|+|. +.
T Consensus 288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~------e~ 360 (440)
T KOG0302|consen 288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH------ED 360 (440)
T ss_pred cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc------cC
Confidence 987 34444 88999999999999988999999999999999986 5689999999999999999992 33
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..|++++.|.+|.|||+....-...... . ... .+-|++. +.++.++
T Consensus 361 ------s~iaasg~D~QitiWDlsvE~D~ee~~~-~--------------------a~~------~L~dlPp-QLLFVHq 406 (440)
T KOG0302|consen 361 ------SVIAASGEDNQITIWDLSVEADEEEIDQ-E--------------------AAE------GLQDLPP-QLLFVHQ 406 (440)
T ss_pred ------ceEEeccCCCcEEEEEeeccCChhhhcc-c--------------------ccc------chhcCCc-eeEEEec
Confidence 5899999999999999875332111100 0 000 0122221 2333333
Q ss_pred cCCCCeeEEEEeCC---eEEEEECCCeEE
Q 008939 483 VHTEPLSGLIFTQE---SVLTVCREGHIK 508 (548)
Q Consensus 483 ~h~~~V~~l~fspd---~l~t~s~Dg~I~ 508 (548)
+ +..|..|.|++. +|++.+.||.-.
T Consensus 407 G-Qke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 407 G-QKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred c-hhHhhhheeccCCCCeEEEecccceeE
Confidence 3 345899999985 589999998643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=178.31 Aligned_cols=232 Identities=17% Similarity=0.196 Sum_probs=179.0
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|+.+...+....++++|+.||.|.|||+......+...-..+..-.. ....-..|+-.|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v-----------~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIV-----------AKQHENGHKYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeec-----------cccCCccceeeeeeeEE
Confidence 4889999999999776699999999999999997633211111110000000 01122457789999999
Q ss_pred CC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC---CEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 308 ST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 308 sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
-| |.-++.+++.|.+++|||..+-+....++ ..+.|.+-+|+|-. -++|+|..|-.|++.|+..|..-+.+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 99 77789999999999999999998877776 56778899999843 478889999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-eEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
+.|.+|.|+| ..+ ..|++++.||.|++||++.. .|...+..+...
T Consensus 189 ~~vlaV~Wsp-------~~e-----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k---------------------- 234 (397)
T KOG4283|consen 189 DGVLAVEWSP-------SSE-----WVLATGSADGAIRLWDIRRASGCFRVLDQHNTK---------------------- 234 (397)
T ss_pred CceEEEEecc-------Cce-----eEEEecCCCceEEEEEeecccceeEEeecccCc----------------------
Confidence 9999999999 331 78999999999999999976 555555431100
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+..-..|.+.|++++|+.++ +++++.|..+++|+...+.
T Consensus 235 -----------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 -----------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -----------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 011122234689999999999975 9999999999999987665
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=196.01 Aligned_cols=297 Identities=17% Similarity=0.224 Sum_probs=203.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+....|++.....+.|+++..+|.|.++|.+...-...+. -.+....|...|.++.|.| ++..|++++.|.+
T Consensus 51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~------~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT 123 (720)
T KOG0321|consen 51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEER------QLKKPLAHKNAIFDLKWAP-GESLLVSASGDST 123 (720)
T ss_pred CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhh------hhcccccccceeEeeccCC-CceeEEEccCCce
Confidence 44556777665557899999999999999988632221111 1122235999999999999 5549999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe-
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ- 332 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~- 332 (548)
+++||+...+ ..-...+.+|++.|.+++|.| +...|++|+.||.|.|||++...
T Consensus 124 ~r~Wdvk~s~------------------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 124 IRPWDVKTSR------------------------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred eeeeeeccce------------------------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 9999998632 111234778999999999999 56789999999999999996322
Q ss_pred --------------------------EEEeeeecCCceEE---EEEccCCCEEEEEeC-CCeEEEEECCCceeEEec---
Q 008939 333 --------------------------LICGGKSYYGALLC---CAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWG--- 379 (548)
Q Consensus 333 --------------------------~~~~~~~~~~~v~~---l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~~~--- 379 (548)
.+...+.+...|.. +.+..|...||+++. |+.|+|||+++.......
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~ 259 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPR 259 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCC
Confidence 01111223344444 556678889999888 999999999875433222
Q ss_pred -----cCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc
Q 008939 380 -----EGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 380 -----~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.-| .-.+.++..+. .|. +++|+| .|+.|.+||+..-...-.... .......|......
T Consensus 260 ~~~~~~t~skrs~G~~nL~lDs-------sGt-----~L~AsC-tD~sIy~ynm~s~s~sP~~~~-sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 260 GSDKYPTHSKRSVGQVNLILDS-------SGT-----YLFASC-TDNSIYFYNMRSLSISPVAEF-SGKLNSSFYVKSEL 325 (720)
T ss_pred cccCccCcccceeeeEEEEecC-------CCC-----eEEEEe-cCCcEEEEeccccCcCchhhc-cCcccceeeeeeec
Confidence 123 23455666654 452 455555 599999999986432211111 01111111111112
Q ss_pred cccCCeeeecccCCCCceeecCCC-CceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.--+..+..|+.+....+|.+... .+...+.+|.-.|+.++|.|. -++|+++|-.++||++....
T Consensus 326 Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 326 SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 222456688899999999988765 467788899999999999995 29999999999999986554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=175.23 Aligned_cols=254 Identities=15% Similarity=0.219 Sum_probs=199.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..|...|-.+..+--|++|++++.| +|+|+..+.... .++..+..|...+.-++|...- -|..|++++.||.|.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk-~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK-FGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc-cCcEeeEeecCceEEEEe
Confidence 3567777777778889999999888 999999986443 6788999999999999997632 288999999999999998
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
-++..+.... +...|...|++|+|.|.+-. +|++++.||.|.|.+.+.++.-
T Consensus 87 e~~g~w~k~~----------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w----------------- 139 (299)
T KOG1332|consen 87 EENGRWTKAY----------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW----------------- 139 (299)
T ss_pred cCCCchhhhh----------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-----------------
Confidence 7763221111 22358999999999997643 7888999999999999875221
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC---C-----------CEEEEEECCCeEEEEeCCCCe--EEEeeeecCCceEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD---G-----------TYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGALLCC 347 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~---g-----------~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l 347 (548)
..-+....|.-.|++++|.|. | +.|++|+.|..|+||+...++ +.+.+.+|.+.|+.+
T Consensus 140 ------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 140 ------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred ------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 112334567788999999985 4 569999999999999998763 345589999999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCc--e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 008939 348 AWSMDG----KYILTGGEDDLVQVWSMEDR--K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 348 ~~spdg----~~l~sgs~dg~I~vwd~~~~--~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i 420 (548)
+|.|.- .+||++++||.|.||..+.. + ....++.....+..+.|++ .| +.|+.++.|+.|
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~-------sG------n~LaVs~GdNkv 280 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL-------SG------NILAVSGGDNKV 280 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec-------cc------cEEEEecCCcEE
Confidence 999965 37999999999999987632 1 1223344567899999999 88 799999999999
Q ss_pred EEEECCC
Q 008939 421 LLWDLEM 427 (548)
Q Consensus 421 ~lwd~~~ 427 (548)
.+|.-..
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9997543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-21 Score=172.24 Aligned_cols=287 Identities=16% Similarity=0.172 Sum_probs=205.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-++|..-+.++.|++.|+++++++.| +|+|||++... .......+.|.+.+..+.|.+.+- |+.+++++.|+.|.|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf-GqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF-GQVVATCSYDRTVSI 87 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc-cceEEEEecCCceee
Confidence 35688889999999999999999988 99999976533 456667778999999999988765 889999999999999
Q ss_pred EEeee-cccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCC-CCccccccccee
Q 008939 203 VSLRQ-QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGD-SSFPVIKDQTQF 279 (548)
Q Consensus 203 wdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~ 279 (548)
|+-.. .....++........ .-....|++|.|.|.... .|++++.||.|+||+.-...... ..++.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl----~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei----- 158 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTL----VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI----- 158 (361)
T ss_pred eeecccccccccceeEEEEEe----ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh-----
Confidence 98532 112222222221111 124789999999997543 78899999999999976422211 1111000
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECC-----CeEEEEeCCCC----eEEEeeeecCCceEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRD-----GYLRVFDYSKE----QLICGGKSYYGALLCC 347 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~d-----g~v~vwd~~~~----~~~~~~~~~~~~v~~l 347 (548)
.+.+.....+..+..|+.|+|. ..+||+|+.+ +.+.||....+ ..+.++..|..+|+.+
T Consensus 159 ---------~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di 229 (361)
T KOG2445|consen 159 ---------QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI 229 (361)
T ss_pred ---------hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence 0000111234577889999983 4678888765 47899987543 2456678999999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCc--------------------eeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 348 AWSMDG----KYILTGGEDDLVQVWSMEDR--------------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 348 ~~spdg----~~l~sgs~dg~I~vwd~~~~--------------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+|.|+- ..||+++.|| |+||++... +.+..+.+|++.|..+.|+- -|
T Consensus 230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-------tG- 300 (361)
T KOG2445|consen 230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-------TG- 300 (361)
T ss_pred eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-------ee-
Confidence 999963 4799999999 999998731 24556778999999999987 77
Q ss_pred ccceeEEEEEEeCCCeEEEEECC---CCeEEeeeecCCCCCCcee
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLE---MDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~---~~~~~~~~~~~~~~~~~~~ 445 (548)
..|.+.|.||+|++|... .-.|...+..+.......|
T Consensus 301 -----tiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~ 340 (361)
T KOG2445|consen 301 -----TILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDF 340 (361)
T ss_pred -----eEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccc
Confidence 799999999999999754 2345555655444444433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=185.89 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=208.9
Q ss_pred EEeCCCCCEEEEecC-C---eEEEEEccCCCCC-CeEEEecCCCCceEEEecCC----CCCCceEEEEEcCCcEEEEEee
Q 008939 136 TNFDGKGTYIIFNVG-D---AIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQD----AKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-d---~v~vwd~~~~~~~-~i~~~~~~~~~~~~~~~~p~----~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
+..-|+..+|+++-. + .+.||=++..... -++.=..-+..+.|++|-.- +..|+++++|+.+-.|.|||+.
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccc
Confidence 444565556655432 2 4444444432211 12211224667899988643 3348899999999999999986
Q ss_pred ecccccccceeee-----------eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 207 QQLQDVGKKLVGA-----------HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 207 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
-. +...+.... ..-......|...|..+.|+..-.++|++|+.|.+|.+||+.+
T Consensus 211 I~--d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~------------- 275 (463)
T KOG0270|consen 211 IV--DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT------------- 275 (463)
T ss_pred cc--cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------
Confidence 41 111111100 0011122358999999999999888999999999999999997
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
.+|...+..|.+.|.++.|+| ...+|++|+.|++|++.|.+........-...+.|-.++|.|...
T Consensus 276 -------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 276 -------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred -------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 345566666789999999999 678999999999999999985433322233457899999999775
Q ss_pred -EEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 355 -YILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 355 -~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
.++++..||.|+-+|++.. +++.+++.|.+.|++|++++ . ...++++++.|+.|++|++.......
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-------~-----~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-------Q-----TPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC-------C-----CCcceeeccccceEEEEeecCCCCcc
Confidence 5677789999999999985 89999999999999999976 1 11589999999999999987644321
Q ss_pred eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEE
Q 008939 433 PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKI 509 (548)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~i 509 (548)
...+ .+ ..+...+.++.|+ .|+.|+.-+.++|
T Consensus 411 v~~~-------------------------------------------~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 411 VKEH-------------------------------------------SF--KLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred cccc-------------------------------------------cc--cccceeecccCCCcceEEEecCccceEEE
Confidence 1111 00 1223667777776 3888888889999
Q ss_pred EeCCCCC
Q 008939 510 WMRPGVA 516 (548)
Q Consensus 510 W~~~~~~ 516 (548)
||+-...
T Consensus 446 wd~~~~~ 452 (463)
T KOG0270|consen 446 WDIFTNS 452 (463)
T ss_pred eecccCh
Confidence 9976543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=194.06 Aligned_cols=244 Identities=19% Similarity=0.244 Sum_probs=175.6
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+..+...|..++++|. |..|++|+.|..|++||+..- +...+....+ .......|+++.|++.+. .|++
T Consensus 163 l~hgtk~Vsal~~Dp~---GaR~~sGs~Dy~v~~wDf~gM--das~~~fr~l-----~P~E~h~i~sl~ys~Tg~-~iLv 231 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPS---GARFVSGSLDYTVKFWDFQGM--DASMRSFRQL-----QPCETHQINSLQYSVTGD-QILV 231 (641)
T ss_pred ccCCceEEEEeeecCC---CceeeeccccceEEEEecccc--cccchhhhcc-----CcccccccceeeecCCCC-eEEE
Confidence 3445668899999999 889999999999999998752 1111111000 012456899999999999 7777
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEe
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFD 327 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd 327 (548)
.+..-..+|+|-+- .....+ ..+.++.. -+..-++|...++|.+|+|. ...+++++.||++||||
T Consensus 232 vsg~aqakl~DRdG--~~~~e~---~KGDQYI~---------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDG--FEIVEF---SKGDQYIR---------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred EecCcceeEEccCC--ceeeee---eccchhhh---------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 77778999999652 221111 11222221 13445788899999999994 56899999999999999
Q ss_pred CCCCe-EEEeee-----ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--e-EEeccCCCC--CeEEEEEecCCC
Q 008939 328 YSKEQ-LICGGK-----SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--V-VAWGEGHNS--WVSGVAFDSYWS 396 (548)
Q Consensus 328 ~~~~~-~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~-~~~~~~h~~--~V~~v~~~p~~~ 396 (548)
+..-+ .+..++ +..-.++.|+|++||++||+|..||.|.+|+..... + .+.-.+|.. .|++|.|++
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~--- 374 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY--- 374 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc---
Confidence 97543 222222 223468999999999999999999999999986532 2 233346876 999999999
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeeee---cCCCCCCceecCCCC
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLR---RGPLGGSPTFSTGSQ 450 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 450 (548)
|| ++|++-+.|..+++|||+.-+ ++.... ..-+.+.++|+|+..
T Consensus 375 ----dg------~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 375 ----DG------NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred ----cc------chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 99 899999999999999998743 343332 224567888988864
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=181.88 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=188.9
Q ss_pred ccccccCCCCCCceeEEeCCCCC-EEEEec-CC-eEEEEEccCC--------------CCCCeEEEecCCCCceEEEecC
Q 008939 121 IGSLGASSSSTSMTNTNFDGKGT-YIIFNV-GD-AIFISDLNSQ--------------DKDPIKSIHFSNSNPVCHAFDQ 183 (548)
Q Consensus 121 ~~~~~~~~h~~~v~~~~~~~~g~-~l~~~~-~d-~v~vwd~~~~--------------~~~~i~~~~~~~~~~~~~~~~p 183 (548)
...+..-+|.+.+..+.-++-|+ .++.+- .. .|+||++... ..+|+.++..|...-..++|+|
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 33555666766666666665532 233322 22 8888887542 2478999999999999999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 263 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~ 263 (548)
-. ...|++|..-+.|++|...+..+...+..+ ..|...|-+|+|+|...++|++|+.||+|+|||++..
T Consensus 222 ~~--~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf---------~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 222 IK--TGRLLSGDCVKGIHLWEPSTGSWKVDQRPF---------TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred cc--ccccccCccccceEeeeeccCceeecCccc---------cccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 53 346889999999999998774444333322 2489999999999999889999999999999999973
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC---CeEEEeeeec
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK---EQLICGGKSY 340 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~ 340 (548)
. ..+....+.|.+.|+.+.|+....+||+|+.||+++|||++. ++++..++-|
T Consensus 291 ~------------------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 291 P------------------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred C------------------------ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence 1 233444588999999999999877999999999999999974 5678899999
Q ss_pred CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCce----------------eEEeccCC--CCCeEEEEEecCCCCCCCC
Q 008939 341 YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRK----------------VVAWGEGH--NSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 341 ~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~----------------~~~~~~~h--~~~V~~v~~~p~~~~~~~d 401 (548)
..+|++|.|+|.. ..|++++.|..|.|||+..-. +-+.+.-| ...|..|.|++. ..
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q-----iP 421 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ-----IP 421 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC-----CC
Confidence 9999999999965 468888999999999985211 00111123 456788999871 12
Q ss_pred CCccceeEEEEEEeCCCe
Q 008939 402 GTAETVMYRFGSVGQDTR 419 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~ 419 (548)
| +|++.+.||-
T Consensus 422 G-------~lvsTa~dGf 432 (440)
T KOG0302|consen 422 G-------LLVSTAIDGF 432 (440)
T ss_pred C-------eEEEecccce
Confidence 3 7888888884
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=185.91 Aligned_cols=288 Identities=15% Similarity=0.203 Sum_probs=216.4
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
++.+.+.|..++|+||+.. .+.|+++-.+|.|.+|+++.. --....++- .....|..++|++.+ .
T Consensus 18 crf~d~~Ps~I~slA~s~k---S~~lAvsRt~g~IEiwN~~~~-----w~~~~vi~g-----~~drsIE~L~W~e~~--R 82 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHK---SNQLAVSRTDGNIEIWNLSNN-----WFLEPVIHG-----PEDRSIESLAWAEGG--R 82 (691)
T ss_pred EEEEeeeccceEEEEEecc---CCceeeeccCCcEEEEccCCC-----ceeeEEEec-----CCCCceeeEEEccCC--e
Confidence 3455678999999999998 667999999999999999872 111111111 146789999999666 5
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|.+.+.+|.|.-||+.+ .++....+.-.+.|.+++.+|.+..++.++.||.+..
T Consensus 83 LFS~g~sg~i~EwDl~~--------------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHT--------------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred EEeecCCceEEEEeccc--------------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 89999999999999986 2445555555689999999999999999999998888
Q ss_pred EeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-------c-CCCCCeEEEEEecCC
Q 008939 326 FDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------E-GHNSWVSGVAFDSYW 395 (548)
Q Consensus 326 wd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~-~h~~~V~~v~~~p~~ 395 (548)
++...++.... +....+.|.++.|+|++..|+.|+.||.|++||...+..++.. . +..--|++|.|-.
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-- 214 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-- 214 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--
Confidence 88887776543 4445689999999999999999999999999999998766622 1 1344678999887
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCcee-ecC
Q 008939 396 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR-DVP 473 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~-d~~ 473 (548)
|+ .|++|..-|.|.+||-..+.+++....+ ..+.+++.+.+. ..+..+..|+.+-.+ ...
T Consensus 215 -----d~-------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~------d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 215 -----DS-------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE------DRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred -----cC-------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC------CeEEEccCCCceEEEEecC
Confidence 77 8999999999999999999988877643 344555554443 223333333333332 222
Q ss_pred CCC---ceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 474 KLS---PLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 474 ~~~---~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
... .......|...|.+++..++.|++|+.|..+.+-....
T Consensus 277 ~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred CccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccc
Confidence 211 22333468889999999999999999999998877544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=206.55 Aligned_cols=236 Identities=20% Similarity=0.255 Sum_probs=204.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+..|...+.++..-..++.++.++.+ .+-+|.+.... ++..+..|...|-|+.|++. ..+|+.|..+|.|++|
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcc---hhhhcccccCCceeee
Confidence 344566666677766667788888888 77799998854 88889999999999999998 7789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++.. +.+. ...+|...+..+.|+|-+. +++.|+.|+.+.+||.++
T Consensus 98 DleeA-----k~vr-------tLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk--------------------- 143 (825)
T KOG0267|consen 98 DLEEA-----KIVR-------TLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK--------------------- 143 (825)
T ss_pred ehhhh-----hhhh-------hhhccccCcceeeeccceE-Eeccccccccceehhhhc---------------------
Confidence 99861 2111 1224889999999999999 889999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.++.+.+++|...|.++.|+|+|++++.++.|..++|||+..|+++..|+.|.+.+..+.|+|..-+++.|+.|+
T Consensus 144 -----~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 144 -----KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred -----cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 466888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+|++||+++.+.+.........|.+++|+| +| ..+.+|.++
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~-------~~------~~~~~G~q~ 259 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNP-------DG------KIVLSGEQI 259 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecC-------Cc------eeeecCchh
Confidence 999999999999988888889999999999 88 556655544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-20 Score=180.14 Aligned_cols=267 Identities=12% Similarity=0.073 Sum_probs=186.2
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
..+++++.|+.|++||+.+ ++ ...... ....+.+++|+|++..+++++..++.|++||.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t-----~~-~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---- 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT-----LE-VTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---- 64 (300)
T ss_pred cEEEEecCCCEEEEEECCC-----Cc-eEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc----
Confidence 3678889999999999875 22 222111 123467899999998444677889999999987521
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
.+..+..+ ..+..++|+|+++.++++ ..|+.|++||+++.+.+..+.. ...+.++
T Consensus 65 ----------------------~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~ 120 (300)
T TIGR03866 65 ----------------------VIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGM 120 (300)
T ss_pred ----------------------EEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceE
Confidence 11112222 235678999999877655 5689999999998887776653 3346889
Q ss_pred EEccCCCEEEEEeCCC-eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEEC
Q 008939 348 AWSMDGKYILTGGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDL 425 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg-~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~ 425 (548)
+|+|++++++++..++ .+.+||.++++.+..+. ....+..++|+| +| .+| +++..++.|++||+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-------dg------~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTA-------DG------KELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECC-------CC------CEEEEEcCCCCEEEEEEc
Confidence 9999999999988765 57788999887765543 233457899999 88 455 45556999999999
Q ss_pred CCCeEEeeeecCCC--------CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 426 EMDEIVVPLRRGPL--------GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 426 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
++++++..+..... ...+.+++++.. .+.....+..+.+||+.+.+.+..+. +...+.+++|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g 260 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-----AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE 260 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCE-----EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCC
Confidence 99988776643211 123445555421 11222234568889998777665543 44579999999974
Q ss_pred --EEEE-ECCCeEEEEeCCCCC
Q 008939 498 --VLTV-CREGHIKIWMRPGVA 516 (548)
Q Consensus 498 --l~t~-s~Dg~I~iW~~~~~~ 516 (548)
|+++ ..++.|++||+.+.+
T Consensus 261 ~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 261 KYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCc
Confidence 6665 569999999998866
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=171.97 Aligned_cols=243 Identities=13% Similarity=0.159 Sum_probs=182.3
Q ss_pred CCCceeEEeCCCCCEEEEec-CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...|..+.|+|.+..|++++ +..+++||+.... ....+. +...+++.+|.++ ..+++|+.||.|+.+|+...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~-~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFK-HGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhee-cCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence 45677899998877666655 5599999999743 333333 6778999999874 35899999999999999872
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
. ...+ . .|...|.||.+++... .+++|+.|++|++||.+... ...
T Consensus 86 ~---~~~i---g-------th~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-~~~-------------------- 130 (323)
T KOG1036|consen 86 N---EDQI---G-------THDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-VVG-------------------- 130 (323)
T ss_pred c---ceee---c-------cCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-ccc--------------------
Confidence 1 1111 1 2899999999998777 89999999999999998511 000
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
.+.. ...|.++.. .++.|++|+.|..+.+||+++.....+.+ ...-.++|+++-|++.-.++++-||.|.
T Consensus 131 -----~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 131 -----TFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred -----cccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 0110 146777765 46689999999999999999765443211 2334689999999888899999999999
Q ss_pred EEECCCc----eeEEeccCCC---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 367 VWSMEDR----KVVAWGEGHN---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 367 vwd~~~~----~~~~~~~~h~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+=.++.. +....|+.|. -+|.+|+|+| -- ..|+||+.||.|.+||+...+.+..
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-------~~------~tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-------IH------GTFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-------cc------ceEEecCCCceEEEccCcchhhhhh
Confidence 9777665 3444566664 3899999999 22 4799999999999999998776654
Q ss_pred ee
Q 008939 434 LR 435 (548)
Q Consensus 434 ~~ 435 (548)
+.
T Consensus 270 ~~ 271 (323)
T KOG1036|consen 270 LA 271 (323)
T ss_pred cc
Confidence 43
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=184.84 Aligned_cols=303 Identities=12% Similarity=0.115 Sum_probs=216.8
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+...+..+...+++++|+|... -.++++|...|+|-+||++.+..+..+... +..|..+|.+|.|+|.+.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~-~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~--------f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTEN-RKLVAVGDKGGQVGLWNFGTQEKDKDGVYL--------FTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eecceeEecccceEEEEecccCc-ceEEEEccCCCcEEEEecCCCCCccCceEE--------eccCCccccceEecCCCh
Confidence 35566677888999999999853 468999999999999999753223222221 124899999999999988
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
..+++.+.||+|++-|++..- .. .+..++.....+..+.|+.+...++.+..=|.+
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i-~e-----------------------~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNI-SE-----------------------EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNF 303 (498)
T ss_pred hheeeeccCceeeeeeecchh-hH-----------------------HHhhcCccceeeeeccccCCCccEEEeecccce
Confidence 899999999999999998621 11 111111122457788899888888888888899
Q ss_pred EEEeCCCCeE-EEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCC
Q 008939 324 RVFDYSKEQL-ICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 324 ~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
.+||+++... ...+.-|...|..++++|... +|++++.|++++|||++.-.. +.....|...|.+..|+|
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP---- 379 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP---- 379 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC----
Confidence 9999997654 555667888999999999654 789999999999999987432 223345999999999999
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEEC----CCCeEEeeeecCCCCCCceecCCCCccccC-CeeeecccCCCCceeec
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDL----EMDEIVVPLRRGPLGGSPTFSTGSQSAHWD-NVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~g~~~~~~~~~d~ 472 (548)
+| -.|++.++|..|+|||. ...+...++.+. ....-..++-.....|+ ..+.+|.....+-++|-
T Consensus 380 ---s~------gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 380 ---SG------GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ---CC------CceEeeccCCceEEeecccccccCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 66 35999999999999998 444555555542 22222222222223333 45588888888888888
Q ss_pred CCCCceEEeecCCC-CeeEE-EEeCC--eEEEE-ECCCeEEEEeCC
Q 008939 473 PKLSPLVAHRVHTE-PLSGL-IFTQE--SVLTV-CREGHIKIWMRP 513 (548)
Q Consensus 473 ~~~~~~~~~~~h~~-~V~~l-~fspd--~l~t~-s~Dg~I~iW~~~ 513 (548)
...+.+..+..... .|.++ .|+|- .+++| +.-|.|.||.-.
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 77777776544333 55554 68883 35555 467889988644
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=187.03 Aligned_cols=350 Identities=16% Similarity=0.199 Sum_probs=270.8
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.++...|+++.-+|-=+.++.+..+ +|.|++++..+ .+.+++-..+.|+.+.|.-|+ ...+++|...|.+.+|
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--il~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--ILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFW 272 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCc--EEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEE
Confidence 556677889999999999999999888 99999999844 788888555899999999883 3467777888999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc------------
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP------------ 271 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------------ 271 (548)
|++. +++..... ..|.+.|....|.|..+ ++++++.|..+++|=.+++......+.
T Consensus 273 DLe~------kkl~~v~~-----nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 273 DLEK------KKLINVTR-----NAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred EcCC------Ceeeeeee-----ccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 9986 33322211 13788899999999988 999999999988886653211000000
Q ss_pred -cccccceeeee----------------------c--C------------CCCC--------------------------
Q 008939 272 -VIKDQTQFSVA----------------------H--P------------RYSK-------------------------- 288 (548)
Q Consensus 272 -~~~~~~~~~~~----------------------~--~------------~~~~-------------------------- 288 (548)
.......+... + . ...+
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence 00000000000 0 0 0000
Q ss_pred CCCeeEeee-----------c------CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee---eecCCceEEEE
Q 008939 289 SNPIARWHI-----------C------QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCA 348 (548)
Q Consensus 289 ~~~~~~~~~-----------h------~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~ 348 (548)
......|+. + ...+++++.++.|++.+.|+..|.|-+|++.+|-....+ ..|.++|+.++
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 111111211 1 257889999999999999999999999999999888877 58999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
...-++.+++++.+|.+.+||..+...+..+. -...+.++.++. .. -+++.+..|-.|+++|..+.
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-------~s------~l~a~~~ddf~I~vvD~~t~ 566 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-------VS------DLLAIALDDFSIRVVDVVTR 566 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-------hh------hhhhhhcCceeEEEEEchhh
Confidence 99989999999999999999999988887777 556778888876 44 47899999999999999999
Q ss_pred eEEeeee-cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECC-
Q 008939 429 EIVVPLR-RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCRE- 504 (548)
Q Consensus 429 ~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~D- 504 (548)
+.++.+. +...++.++|++++ ..+.+.+.|..++.||+++...+..+.. ..+.+.|.|+|+ .|+|+..|
T Consensus 567 kvvR~f~gh~nritd~~FS~Dg------rWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDG------RWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred hhhHHhhccccceeeeEeCCCC------cEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecC
Confidence 9999988 44789999999998 6667888899999999999999887753 577899999996 59999998
Q ss_pred CeEEEEe
Q 008939 505 GHIKIWM 511 (548)
Q Consensus 505 g~I~iW~ 511 (548)
.-|++|.
T Consensus 640 ~gIylWs 646 (910)
T KOG1539|consen 640 NGIYLWS 646 (910)
T ss_pred ceEEEEE
Confidence 6699997
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=193.44 Aligned_cols=242 Identities=16% Similarity=0.216 Sum_probs=195.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|....+.++|+++|.+|++++.| .|++|+......+| ..+..+...+.+++.. ..+|++|+.++.|.+|.+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~-----s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACY-----SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeec-----ccceEEeeccceEEEeeCC
Confidence 466667899999999999998887 99999977642222 2222255666666665 4489999999999999887
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
... ....+.. ..-++++++|+.+|. +++.|+.|-.|++-++...
T Consensus 85 s~~--~~~iL~R----------ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~----------------------- 128 (933)
T KOG1274|consen 85 SGE--EDTILAR----------FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDS----------------------- 128 (933)
T ss_pred CCC--ccceeee----------eeccceEEEEecCCc-EEEeecCceeEEEEecccc-----------------------
Confidence 621 1111111 356889999999999 9999999999999998762
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec--------CCceEEEEEccCCCEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--------YGALLCCAWSMDGKYILT 358 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--------~~~v~~l~~spdg~~l~s 358 (548)
.....+++|+++|.++.|+|++++||+.+.||.|+|||+.++.+...+.+- ...+..++|+|++..|+.
T Consensus 129 ---s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 129 ---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred ---chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 346778899999999999999999999999999999999988776554321 345677899999888888
Q ss_pred EeCCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...|+.|++|+.........++. +...+..+.|+| +| .+||+++.||.|.|||.++
T Consensus 206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-------nG------~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-------NG------KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eccCCeEEEEccCCceeheeecccccccceEEEEEcC-------CC------cEEeeeccCCcEEEEeccc
Confidence 88999999999999988777763 455599999999 99 8999999999999999987
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=184.50 Aligned_cols=403 Identities=12% Similarity=0.105 Sum_probs=258.4
Q ss_pred cccccCCCCCCceeEEeCCCCC---EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 122 GSLGASSSSTSMTNTNFDGKGT---YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 122 ~~~~~~~h~~~v~~~~~~~~g~---~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
......+|..+|+|+.+-|+.+ +++++..| .|.+|.++......+..+..+...+.|+.-.+. ...+...|
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~-----~~~~~~ad 120 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSS-----VMTCKAAD 120 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeee-----EEEeeccC
Confidence 3567789999999999999888 77787777 999999996554556666654444444433322 22233689
Q ss_pred CcEEEEEeeecc----------------------cccccceeee------e----------eeccCCcccCcceEEEEEe
Q 008939 198 GDVYSVSLRQQL----------------------QDVGKKLVGA------H----------HYNKDGSVNNSRCTSVTWV 239 (548)
Q Consensus 198 g~I~iwdl~~~~----------------------~~~~~~~~~~------~----------~~~~~~~~~~~~v~~l~~~ 239 (548)
+.+++||..+.. +..+..+... . ....+..+|.+.|.+|+|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 999999984311 0000000000 0 0001123589999999998
Q ss_pred cCCC--cEEEEEeCCCcEEEEEcCCCCCCC-----CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 240 PGGD--GAFVVGHADGNLYVYEKSKDGAGD-----SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 240 p~~~--~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
..+. .+|++++.|..|+||.+...+... .......+...|.....-.-+...-..+.+|+..|+++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 7554 478889999999999986544222 001111111111111000000011134458999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCC--eE-----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc---eeEEeccCC
Q 008939 313 YLATVGRDGYLRVFDYSKE--QL-----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGH 382 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~--~~-----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h 382 (548)
.|++++.|.++.+|...+. -- +..+-+..+....+.|+|++..+++-+.-|-.++|...+. .....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 9999999999999987654 11 2223334567899999999999999999999999984332 344456799
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeeeecC----CCCCCcee------------
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPLRRG----PLGGSPTF------------ 445 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~~~~----~~~~~~~~------------ 445 (548)
.+.|..|+|+| .| .+|++++.|.+-|||---..+ .-.++..+ ....++.|
T Consensus 361 ~~~V~dv~W~p-------sG------eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 361 VDGVKDVDWDP-------SG------EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred cccceeeeecC-------CC------CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence 99999999999 88 699999999998887533000 00011000 00000000
Q ss_pred ------------------------------cCCCC------------c--------------------------------
Q 008939 446 ------------------------------STGSQ------------S-------------------------------- 451 (548)
Q Consensus 446 ------------------------------~~~~~------------~-------------------------------- 451 (548)
.+++. .
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 00000 0
Q ss_pred -----ccc--------------------CCe-eeecc-----cCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eE
Q 008939 452 -----AHW--------------------DNV-CPVGT-----LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SV 498 (548)
Q Consensus 452 -----~~~--------------------d~~-~~~g~-----~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l 498 (548)
..| +.. ++... ....+++|+...+..+..+.+|.-.|+.|+|+|| +|
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 000 000 00000 0346888999999999999999999999999998 49
Q ss_pred EEEECCCeEEEEeCCCCCcc------ccCCCCcEE--EecCCCCceEeeecc
Q 008939 499 LTVCREGHIKIWMRPGVAES------QSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~~~~~~~------~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
+++|+|.++.+|+....... ...|..-|+ +++||+++++++...
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 99999999999997543311 235666666 789999999998655
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=183.13 Aligned_cols=293 Identities=13% Similarity=0.177 Sum_probs=221.8
Q ss_pred EEEEecCCeEEEEEccCCCCCC-eEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEEEEeeecccccccceeeee
Q 008939 144 YIIFNVGDAIFISDLNSQDKDP-IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.+.+++|.+++||+.....++ +.... .+..+..+.|+.. +.|++++..|. |.+|.-..+.. .-+++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~----n~lvvas~~gdk~~~~~~K~g~~~--~Vp~~~-- 75 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRR----NFLVVASMAGDKVMRIKEKDGKTP--EVPRVR-- 75 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-CCCcceeeecccc----ceEEEeecCCceeEEEecccCCCC--ccceee--
Confidence 5677788899999998643222 11111 2224677777764 23677766554 77776544210 011111
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
+. ..+.-.|++...... ++++|+..+.|+|||++. .-..+.++.|+.
T Consensus 76 ---k~---~gd~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~~--------------------------kl~hr~lkdh~s 122 (673)
T KOG4378|consen 76 ---KL---TGDNAFCVACASQSL-YEISGGQSGCVKIWDLRA--------------------------KLIHRFLKDHQS 122 (673)
T ss_pred ---cc---ccchHHHHhhhhcce-eeeccCcCceeeehhhHH--------------------------HHHhhhccCCcc
Confidence 11 122334444444445 899999999999999984 123455678899
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEEe
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
.|+++.++....|||+++..|.|.|..+.++.....+... ...|+-+.|+|..++ |.+++.+|.|.+||+....++..
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~ 202 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH 202 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc
Confidence 9999999998899999999999999999998877666644 345668999998875 56789999999999988776654
Q ss_pred -ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCe
Q 008939 379 -GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 379 -~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 457 (548)
.+.|..+...|+|+| ... .+|++.|.|..|.+||++.......+....+-..++|.++| .+
T Consensus 203 ~~~~HsAP~~gicfsp-------sne-----~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G------~~ 264 (673)
T KOG4378|consen 203 ASEAHSAPCRGICFSP-------SNE-----ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG------TY 264 (673)
T ss_pred hhhhccCCcCcceecC-------Ccc-----ceEEEecccceEEEeecccccccceeeecCCcceeeecCCc------eE
Confidence 467999999999999 331 68999999999999999999988888888999999999887 66
Q ss_pred eeecccCCCCceeecCCC-CceEEeecCCCCeeEEEEeCC
Q 008939 458 CPVGTLQPAPSMRDVPKL-SPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~-~~~~~~~~h~~~V~~l~fspd 496 (548)
+..|+..+.+..||++.. .|+..+..|...|++|+|-|.
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 789999999999999854 689999999999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=189.49 Aligned_cols=265 Identities=14% Similarity=0.234 Sum_probs=202.7
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+|...-+.++|.|+ |..|++++.||.|++|+......++ +.+ .++...|.+++... . .|++|+
T Consensus 11 aht~G~t~i~~d~~---gefi~tcgsdg~ir~~~~~sd~e~P--~ti---------~~~g~~v~~ia~~s--~-~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD---GEFICTCGSDGDIRKWKTNSDEEEP--ETI---------DISGELVSSIACYS--N-HFLTGS 73 (933)
T ss_pred hccCceEEEEEcCC---CCEEEEecCCCceEEeecCCcccCC--chh---------hccCceeEEEeecc--c-ceEEee
Confidence 46677899999999 7799999999999999876521111 111 01456677776643 3 799999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.+++|.+|.+.... ... .+.++ +-++++++|+-+|+++|.|+.|-.|++.++.+
T Consensus 74 ~~~tv~~y~fps~~-~~~----------------------iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGE-EDT----------------------ILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred ccceEEEeeCCCCC-ccc----------------------eeeee---eccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 99999999987632 111 11122 26799999999999999999999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--------CCCeEEEEEecCCCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------NSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------~~~V~~v~~~p~~~~~~~dg 402 (548)
......+++|.++|.++.|+|.+++||+.+-||.|++||+.++.+..++.+- ...+..++|+| +|
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-------k~ 200 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-------KG 200 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-------CC
Confidence 9889999999999999999999999999999999999999998877666421 35667899999 86
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
..++..+.|+.|++|+....+....+.. .
T Consensus 201 ------g~la~~~~d~~Vkvy~r~~we~~f~Lr~---------------------------------------------~ 229 (933)
T KOG1274|consen 201 ------GTLAVPPVDNTVKVYSRKGWELQFKLRD---------------------------------------------K 229 (933)
T ss_pred ------CeEEeeccCCeEEEEccCCceeheeecc---------------------------------------------c
Confidence 4788889999999999998877665544 1
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccCCCCcEEEecCCCCce
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPL 536 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~l 536 (548)
.|...+..+.|+|. +|++++.||.|.|||..+.........-...+|-|+...|
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCee
Confidence 23344889999997 4999999999999998873332111111222555666543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=178.24 Aligned_cols=279 Identities=14% Similarity=0.206 Sum_probs=214.5
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...++++.|+|. ...|++++.||.++||.++.+.. +.+...+ ....+|.+.+|.|+|...+++++..
T Consensus 213 ~~~I~sv~FHp~---~plllvaG~d~~lrifqvDGk~N----~~lqS~~------l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 213 HGGITSVQFHPT---APLLLVAGLDGTLRIFQVDGKVN----PKLQSIH------LEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred cCCceEEEecCC---CceEEEecCCCcEEEEEecCccC----hhheeee------eccCccceeeecCCCceEEEecccc
Confidence 357888888888 66899999999999999986322 2222233 2578899999999998788899999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
..++.||+.+.... .. ....++ +..+..+..++++++|+..+..|.|.+....++
T Consensus 280 ky~ysyDle~ak~~-k~-----------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 280 KYLYSYDLETAKVT-KL-----------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred eEEEEeeccccccc-cc-----------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 99999999763211 11 111111 256778899999999999999999999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE--EEEEecCCCCCCCCCCccceeE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
+.+..++ ..+.|..++|+.|++.|++.+.+|.|.+||++...+++++. ..+.|. .++.++ +| .
T Consensus 336 eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~-------ng------~ 400 (514)
T KOG2055|consen 336 ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISL-------NG------S 400 (514)
T ss_pred hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe-ecCccceeeeeecC-------CC------c
Confidence 9998887 46889999999999999999999999999999999999887 445554 445556 77 7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
+|++|+..|.|.|||..+...- ...+|+..+..-...|+
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s-----------------------------------------~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFAS-----------------------------------------TNPKPIKTVDNLTTAIT 439 (514)
T ss_pred eEEeccCcceEEEeccchhhcc-----------------------------------------CCCCchhhhhhhheeee
Confidence 9999999999999997653210 12245555555567899
Q ss_pred EEEEeCCe----EEEEECCCeEEEEeCCCCCc-cccCC------CCcEEEecCCCCceEeeecccc
Q 008939 490 GLIFTQES----VLTVCREGHIKIWMRPGVAE-SQSSS------SETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 490 ~l~fspd~----l~t~s~Dg~I~iW~~~~~~~-~~~~~------~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
+|.|++|. |++-..+..+|+-.++.... ..++. ...-++|||.+-+||.|+.+|-
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 99999984 45556788999999998662 22221 1223499999999999998864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=176.58 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=191.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecC-CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS-NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...|.+++|+.+...+|.+-.+ .|.||++...- -....++.+ +..+-.++|.+ +..|++.+.+|.|..||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEeccc
Confidence 4578899999999999988766 99999998632 233344443 34788999994 66799999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+++..... ...+.|++++.+|.+. .++.|+.||.++.++...+. .
T Consensus 100 -----lk~~~~~d-------~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~-I--------------------- 144 (691)
T KOG2048|consen 100 -----LKQKYNID-------SNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDK-I--------------------- 144 (691)
T ss_pred -----CceeEEec-------CCCcceeEEEeCCccc-eEEeecCCceEEEEecCCce-E---------------------
Confidence 23332211 2578999999999998 99999999977777765421 0
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--------cCCceEEEEEccCCCEEEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--------YYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~v~~l~~spdg~~l~sg 359 (548)
..-..+...++.|.+++|+|++..|+.|+.||.|++||..++..+..... ..--|.++.|-.|+ .|++|
T Consensus 145 --~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg 221 (691)
T KOG2048|consen 145 --TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG 221 (691)
T ss_pred --EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe
Confidence 00112222358899999999999999999999999999998876652111 22246677777665 68999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
..-|.|++||...+.+++.+..|.+.|.+++..+ ++ .+++++|.|+.|..+-..+...
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-------~~------d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-------NE------DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-------CC------CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999999999999999999988 76 6899999999999998877643
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=165.23 Aligned_cols=253 Identities=17% Similarity=0.233 Sum_probs=180.0
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCC--C--------CCeEEEec-CCCCceEEEec----CCCCCCceEEEEEcCC
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQD--K--------DPIKSIHF-SNSNPVCHAFD----QDAKDGHDLLIGLNSG 198 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~--------~~i~~~~~-~~~~~~~~~~~----p~~~~~~~l~~g~~dg 198 (548)
.+.|+|||..|++.+.| .+.+|++.... + .....+++ .+..+...+|- .+.++..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 47999999999998887 99999986421 0 11222222 23344444443 2223478999999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
-|++||.-+. +.-.....+.... .-....+++|+|||+ .|++|. ...|++||+...+.-...++.....
T Consensus 134 PIh~wdaftG-----~lraSy~~ydh~d--e~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-- 202 (406)
T KOG2919|consen 134 PIHLWDAFTG-----KLRASYRAYDHQD--EYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-- 202 (406)
T ss_pred ceeeeecccc-----ccccchhhhhhHH--hhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcc--
Confidence 9999998762 2111111111111 123456899999999 666654 5799999996545433333322211
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
-.+..+-|.+++|+| +.+.++.++--..+-||.-..+.++..+-+|.+.|+.+.|.++|+.|+
T Consensus 203 ----------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 203 ----------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred ----------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeec
Confidence 012247789999999 667999999888999999888899999999999999999999999999
Q ss_pred EEeC-CCeEEEEECCCc-eeEEeccCCCC-CeEEEEE--ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 358 TGGE-DDLVQVWSMEDR-KVVAWGEGHNS-WVSGVAF--DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 358 sgs~-dg~I~vwd~~~~-~~~~~~~~h~~-~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+|.. |..|..||++.. .++..+..|.. .=..|.| .| +| .+|++|+.||.|++||++.
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-------~~------~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-------KG------EILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-------CC------ceeeccCCCccEEEEecCC
Confidence 9986 789999999874 56777777765 3334555 45 66 7999999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=179.14 Aligned_cols=277 Identities=14% Similarity=0.123 Sum_probs=189.8
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+-.|.+.|..+.|-|....|+..++| ++++||++.....-......|...+..++|.|.. ...+++|+.||.|.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILL 171 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC--CcceeeccCCCcEEE
Confidence 5677899999999999977788888888 9999999986533334467788999999999984 568999999999999
Q ss_pred EEeeecccccccc---------------eeeeeeeccCCcccCcceEE---EEEecCCCcEEEEEeC-CCcEEEEEcCCC
Q 008939 203 VSLRQQLQDVGKK---------------LVGAHHYNKDGSVNNSRCTS---VTWVPGGDGAFVVGHA-DGNLYVYEKSKD 263 (548)
Q Consensus 203 wdl~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~~---l~~~p~~~~~l~s~~~-dg~v~vwd~~~~ 263 (548)
||++....+.... ......-.+....+...|.. +.+..|.. .||+++. |+.|+|||+++.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccc
Confidence 9998643111000 00000001111223334444 44445555 6888776 999999999974
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecC
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYY 341 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~ 341 (548)
......-+...+.. +.. ....-.+.++.....|.+|++.+.|+.|..||+.... .+..+.++.
T Consensus 251 ~~~~r~ep~~~~~~-------------~t~--skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKY-------------PTH--SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred ccccccCCCcccCc-------------cCc--ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 33222111110000 000 0002457778888888888887789999999997543 233333332
Q ss_pred C--ceEEEEEccCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 342 G--ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 342 ~--~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
. --..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.| ...+ -+++|+.|-
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-----S~~t-------~v~TcSdD~ 383 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-----SATT-------PVATCSDDF 383 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-----ccCC-------CceeeccCc
Confidence 1 11223478999999999999999999998864 4667789999999999987 1122 588889999
Q ss_pred eEEEEECCCCeE
Q 008939 419 RLLLWDLEMDEI 430 (548)
Q Consensus 419 ~i~lwd~~~~~~ 430 (548)
.+++|++..+.+
T Consensus 384 ~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 384 RVKIWRLSNGLE 395 (720)
T ss_pred ceEEEeccCchh
Confidence 999999966544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-21 Score=199.33 Aligned_cols=275 Identities=17% Similarity=0.265 Sum_probs=205.6
Q ss_pred eEEEEEcc--CCCC--CCeEEEecCCCCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 152 AIFISDLN--SQDK--DPIKSIHFSNSNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 152 ~v~vwd~~--~~~~--~~i~~~~~~~~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
++.||.+. .... +++-.+. .......++|.+...+ ..+|+.|..||.|.+||....+......++. ..
T Consensus 40 slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la------~~ 112 (1049)
T KOG0307|consen 40 SLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA------TK 112 (1049)
T ss_pred ccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh------hh
Confidence 44555444 3221 3444444 4568899999998442 1258888999999999987632222222221 12
Q ss_pred cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
..|.+.|..+.|++...++|++|..||.|.|||+.+... ...+. . ..-...|.+++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-P~~~~--~---------------------~~~~~eI~~ls 168 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-PFTPG--S---------------------QAPPSEIKCLS 168 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC-CCCCC--C---------------------CCCcccceEec
Confidence 248999999999999998999999999999999987221 11111 0 00127799999
Q ss_pred ECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC--ceEEEEEccCCC-EEEEEeCCC---eEEEEECCCc-eeEEe
Q 008939 307 FST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALLCCAWSMDGK-YILTGGEDD---LVQVWSMEDR-KVVAW 378 (548)
Q Consensus 307 ~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~spdg~-~l~sgs~dg---~I~vwd~~~~-~~~~~ 378 (548)
|+. ..+.|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|+.- .|+++++|. .|.+||++.- .+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 997 456789999999999999998887777665543 477899999874 566776654 6999999864 57888
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+++|...|.+|.|++. |. .+|+|++.|+.|.+|+.++++.+..+..
T Consensus 249 ~~~H~~GilslsWc~~------D~------~lllSsgkD~~ii~wN~~tgEvl~~~p~---------------------- 294 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQ------DP------RLLLSSGKDNRIICWNPNTGEVLGELPA---------------------- 294 (1049)
T ss_pred hcccccceeeeccCCC------Cc------hhhhcccCCCCeeEecCCCceEeeecCC----------------------
Confidence 8999999999999982 43 6899999999999999999998866543
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~ 516 (548)
..+.+..+.|+|. .++.++-||.|-|+.+.+..
T Consensus 295 -------------------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 -------------------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -------------------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 3567899999995 48899999999999987755
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=160.79 Aligned_cols=306 Identities=15% Similarity=0.157 Sum_probs=202.0
Q ss_pred eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcC-------CcEEEEEeeecccccccceeeeeeec
Q 008939 152 AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNS-------GDVYSVSLRQQLQDVGKKLVGAHHYN 223 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~d-------g~I~iwdl~~~~~~~~~~~~~~~~~~ 223 (548)
.|.+.+++.+........- .+.+.|..++-+|. +...|+++..+ -.+.||.+...+............
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~-- 116 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA-- 116 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh--
Confidence 6777777765544443333 35678888888887 34566666553 126789887643221111110000
Q ss_pred cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE
Q 008939 224 KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 303 (548)
Q Consensus 224 ~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (548)
.-...+-+.|.|+.|.|++. .+++-. |..|.+|++.............. -..|+...+
T Consensus 117 ~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~--------------------s~e~~~~ft 174 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSE--------------------SAEMRHSFT 174 (370)
T ss_pred cCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccc--------------------cccccceec
Confidence 00112456899999999988 566544 88999999986332111111000 011346678
Q ss_pred EEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC-ceeEEe
Q 008939 304 SIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAW 378 (548)
Q Consensus 304 ~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~-~~~~~~ 378 (548)
+-+|+| +++.+++. .|++++.||+++.+....+ .+|...|..+.|.|+-+ +|++|++|+.|+|||.+. ..++..
T Consensus 175 sg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred ccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 889999 78878776 5899999999988765544 56888899999999876 588999999999999986 458899
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+.+|..||++|.|+|. -. .+|++++.|..|.+|....-.....++....... .++.
T Consensus 254 l~~HsHWvW~VRfn~~------hd------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese---~e~~--------- 309 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPE------HD------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE---SEDE--------- 309 (370)
T ss_pred cCCCceEEEEEEecCc------cc------eEEEecCCCceeEEEecccccccccccccccccc---Ccch---------
Confidence 9999999999999982 22 6999999999999998765433333322110000 0000
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-C--eEEEEECCCeEEEEeCCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-E--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-d--~l~t~s~Dg~I~iW~~~~ 514 (548)
+..-+.. .-....+.++..|++.|++++|+. | .+++-+.||.+.|=.++.
T Consensus 310 -----dseer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 -----DSEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred -----hhHHhcc-cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0000000 011124566778999999999987 3 488999999999877764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=161.72 Aligned_cols=282 Identities=16% Similarity=0.234 Sum_probs=207.5
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
..++.|++.|.+++.+..+ .|.|||+.+ ...-+.+..|-..+.|++|+++ |+.|++++.|..|.+||+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--~~iar~lsaH~~pi~sl~WS~d---gr~LltsS~D~si~lwDl~~g--- 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--FRIARMLSAHVRPITSLCWSRD---GRKLLTSSRDWSIKLWDLLKG--- 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--cchhhhhhccccceeEEEecCC---CCEeeeecCCceeEEEeccCC---
Confidence 5689999999999999888 999999998 4477777788889999999999 889999999999999999872
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
. +....+ ...+|+.+.|+|...+.+++.-.+..-.+-++... ...+-+..+....
T Consensus 98 --s-~l~rir-------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dl------------ 152 (405)
T KOG1273|consen 98 --S-PLKRIR-------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDL------------ 152 (405)
T ss_pred --C-ceeEEE-------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCcccc------------
Confidence 2 222233 47899999999988877777777777777776531 1111111111000
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
...-.+..|.+.|+++++|...|.+.++|.++-+++..++-.. ..|..+.++..|+.|+.-+.|+.|+.|++
T Consensus 153 -------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 153 -------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred -------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 0112233688999999999999999999999999998887666 78999999999999999999999999998
Q ss_pred CCc-------e--eEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 371 EDR-------K--VVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 371 ~~~-------~--~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
++- + +.+.++. ..-.=.+++|+. ||. +.+++...-..++||.-..|.++..+..
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-------dge-----Yv~a~s~~aHaLYIWE~~~GsLVKILhG--- 290 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-------DGE-----YVCAGSARAHALYIWEKSIGSLVKILHG--- 290 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecC-------Ccc-----EEEeccccceeEEEEecCCcceeeeecC---
Confidence 631 1 1122221 111224667776 772 4444455567899999998888776654
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
...+...++.|+|-. |++- ..|.++||...
T Consensus 291 -------------------------------------------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 291 -------------------------------------------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred -------------------------------------------Cchhheeecccccceeeeeec-cCCceEEEEee
Confidence 112456788898854 4444 77999999843
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=179.20 Aligned_cols=358 Identities=13% Similarity=0.126 Sum_probs=248.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...-..+-|+|++..+++.+.. ..++|--+. ....+...+..|-+.|..++|+|. |.+|++.+.|-+-+++-.-.
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps---GeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS---GEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCC---CCEEEEeccccceeeecccc
Confidence 3445678899999888876654 999998322 122344455678889999999999 88999999999999886441
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC---------CCCC---C------CC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK---------DGAG---D------SS 269 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~---------~~~~---~------~~ 269 (548)
++..- +-.....+|...++|++|.+... .|++|.....+|+|+..+ .+.. . ..
T Consensus 393 ------~q~~w--HEiaRPQiHGyDl~c~~~vn~~~-~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 393 ------RQQEW--HEIARPQIHGYDLTCLSFVNEDL-QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ------cccce--eeecccccccccceeeehccCCc-eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 11110 00012235889999999999644 799999999999999854 0100 0 00
Q ss_pred cccccccc-eee---------------ee--cCCC--------------CCCCCeeEeeecCCCeEEEEECCCCCEEEEE
Q 008939 270 FPVIKDQT-QFS---------------VA--HPRY--------------SKSNPIARWHICQGSINSIAFSTDGTYLATV 317 (548)
Q Consensus 270 ~~~~~~~~-~~~---------------~~--~~~~--------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 317 (548)
.+.+.... .+. .. .... -.-..++.+-+|...|.+++.+|+++++|++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 01000000 000 00 0000 0122345667899999999999999999998
Q ss_pred ECC-----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce----eEEeccCCCCCeEE
Q 008939 318 GRD-----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSG 388 (548)
Q Consensus 318 ~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~~~V~~ 388 (548)
... -.|++|+..+...+..+.+|.-.|+.++|||||++|++.+.|+++.+|...... .....+.|...|+.
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 754 459999999888888899999999999999999999999999999999885432 23346789999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC--eEEeee---ecCCCCCCceecCCCCccccCCeeeeccc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD--EIVVPL---RRGPLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
..|+| ++ .+|+|++.|..|++|..... +.+..+ +.....+.+.+.+-.. ..-...+.+|..
T Consensus 624 csW~p-------de------~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~-~e~~~~vavGle 689 (764)
T KOG1063|consen 624 CSWSP-------DE------KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH-NEKGDVVAVGLE 689 (764)
T ss_pred cccCc-------cc------ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc-ccccceEEEEec
Confidence 99999 88 67999999999999998876 333332 2223333333332210 111124577777
Q ss_pred CCCCceeecCCC------------CceEEeecCCCCeeEEEEeCC------------eEEEEECCCeEEEEeCC
Q 008939 464 QPAPSMRDVPKL------------SPLVAHRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 464 ~~~~~~~d~~~~------------~~~~~~~~h~~~V~~l~fspd------------~l~t~s~Dg~I~iW~~~ 513 (548)
.+.+.+|..+.. ..+....+|.+.|+.+.|.|. .|+.|++|-.+||+++.
T Consensus 690 ~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 690 KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 788888875411 122233467888999999973 17999999999999864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-19 Score=153.31 Aligned_cols=257 Identities=18% Similarity=0.231 Sum_probs=185.7
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc----cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD----VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
.+..-+++|. +++|++|..+|+|.++.+...... +++...-.. ..|.++|+.++|..+ +|++|+
T Consensus 12 tvf~qa~sp~---~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e------qahdgpiy~~~f~d~---~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPS---KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE------QAHDGPIYYLAFHDD---FLLSGG 79 (325)
T ss_pred HHHHHhhCCc---ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec------cccCCCeeeeeeehh---heeecc
Confidence 3455577887 789999999999999998764222 222222111 248999999999832 566554
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
||.|+-|..+.........+..+. ..|.+.=...--.|++|...|..+-+++++.|+.+..||+++
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~-------------~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEV-------------KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhh-------------cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 599999987653321111111110 011111011125689999999777777777999999999999
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC---------C-CCCeEEEEEecCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---------H-NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~---------h-~~~V~~v~~~p~~~~~~~ 400 (548)
|+....+++|.+.|.++.--.....+++|++||++++||.++++++..+.. | ..||-+++-+.
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------- 218 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------- 218 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-------
Confidence 999999999999999999854445689999999999999999998877652 2 35778888754
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
.+|+.| ....+.+|.++..++...+..
T Consensus 219 --------dWlvCG-gGp~lslwhLrsse~t~vfpi-------------------------------------------- 245 (325)
T KOG0649|consen 219 --------DWLVCG-GGPKLSLWHLRSSESTCVFPI-------------------------------------------- 245 (325)
T ss_pred --------ceEEec-CCCceeEEeccCCCceEEEec--------------------------------------------
Confidence 356544 457899999999887765543
Q ss_pred eecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccccC
Q 008939 481 HRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSS 521 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~~ 521 (548)
..+|..+.|-.|.+++++.-..|.-|.+.+....+.+
T Consensus 246 ----pa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip 282 (325)
T KOG0649|consen 246 ----PARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIP 282 (325)
T ss_pred ----ccceeEeeeecceEEEeccccceeeeeeccEEEEecc
Confidence 3568888999999999999999999998876644443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=176.09 Aligned_cols=365 Identities=17% Similarity=0.205 Sum_probs=255.2
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc----c
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ----D 211 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~----~ 211 (548)
..|++|+++++...++.|.||...++. +++.+..+...++.+.+.|....-.++++++.+|.|++||...... +
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~--~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGE--CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHh--hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 578999999999999999999999966 9999999999999999999866457889999999999999765200 0
Q ss_pred cc-c------------------------ceeeee---------------------------------eeccCC-------
Q 008939 212 VG-K------------------------KLVGAH---------------------------------HYNKDG------- 226 (548)
Q Consensus 212 ~~-~------------------------~~~~~~---------------------------------~~~~~~------- 226 (548)
.. + ...... .++..+
T Consensus 100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 00 0 000000 000000
Q ss_pred ----------------------cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 227 ----------------------SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 227 ----------------------~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
..|.-.++|.+++|.+. +++++..||.|.+|.--..
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~--------------------- 237 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGS--------------------- 237 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccc---------------------
Confidence 01556689999999999 9999999999999974321
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
.........|+.|...|++++|+++|.+|++|+..+.+.+|.+.+++ ..-+..-.++|..+.++||+.+.+...+|+.
T Consensus 238 -~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 238 -SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred -ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 01234567899999999999999999999999999999999999988 4445667789999999999999999999999
Q ss_pred EEEEECCCceeEEeccC-----------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 365 VQVWSMEDRKVVAWGEG-----------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-----------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
|.+..+.+......+.+ ..+-.+.++++| .- +.++-.+..+.|.+||+-+...+..
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-------r~------~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-------RT------NSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-------CC------CceeecCCCceEEEEeccccceeee
Confidence 99998866544333332 234567788887 22 4688889999999999999888766
Q ss_pred eecC----CCCC--------CceecCCCCccccCCee-----eeccc--CCCCceeecCCCCceE-----EeecCCCCee
Q 008939 434 LRRG----PLGG--------SPTFSTGSQSAHWDNVC-----PVGTL--QPAPSMRDVPKLSPLV-----AHRVHTEPLS 489 (548)
Q Consensus 434 ~~~~----~~~~--------~~~~~~~~~~~~~d~~~-----~~g~~--~~~~~~~d~~~~~~~~-----~~~~h~~~V~ 489 (548)
++.. ..+. .++.+.. +.|-.++ ..... .-.+++|.......-. ....|...+.
T Consensus 383 ~~v~~~n~~~~~~n~~v~itav~~~~~---gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 383 LQVCDENYSDGDVNIQVGITAVARSRF---GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred EEEEeecccCCcceeEEeeeeehhhcc---ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 6432 1111 1111111 1221111 11111 2245556543332222 2236888777
Q ss_pred EEEEeC----CeEEEEECCCeEEEEeCCCCCcccc----------C--CCCc--EEEecCCCCceEeeecc
Q 008939 490 GLIFTQ----ESVLTVCREGHIKIWMRPGVAESQS----------S--SSET--VLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 490 ~l~fsp----d~l~t~s~Dg~I~iW~~~~~~~~~~----------~--~~~~--v~~~s~d~~~l~s~~~~ 542 (548)
..+|.+ ++++|++.||.++||-+.+.+.... + |... ..+|+.||..|+.+...
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 777765 3699999999999999854432111 1 1222 22788999988888655
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=174.60 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=131.7
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCCCCe----EEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDKDPI----KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~~~i----~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
...+|...|+.+.|+|- ..+|++++.| .|+||.+..+....+ ..+-..+-.+-|+.|+|...+ |++....|
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg---il~s~a~g 150 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG---ILASGAHG 150 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc---eEEeccCc
Confidence 45689999999999995 4466678888 999999996553333 112223346789999999543 77788889
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.++|||+.++ +.++.. ..|.+.|.++.|+.||. +|++++.|.+|+|||.+...
T Consensus 151 ~v~i~D~stq-----k~~~el-------~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~-------------- 203 (1012)
T KOG1445|consen 151 SVYITDISTQ-----KTAVEL-------SGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASM-------------- 203 (1012)
T ss_pred eEEEEEcccC-----ceeecc-------cCCchhhhccccccCCc-eEeeecCCcceEEeCCccCC--------------
Confidence 9999999873 333221 24899999999999999 99999999999999998643
Q ss_pred eeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECC----CeEEEEeCCCC-eEEEeeee-cCCceEEEEEcc
Q 008939 279 FSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRD----GYLRVFDYSKE-QLICGGKS-YYGALLCCAWSM 351 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~-~~~~~~~~-~~~~v~~l~~sp 351 (548)
.+++..++|.+. =..+.|--+-..|++.+.+ ..|++||.+.- ..+.++.- ..-.|.---|.|
T Consensus 204 -----------~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~Dp 272 (1012)
T KOG1445|consen 204 -----------EPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDP 272 (1012)
T ss_pred -----------CccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecC
Confidence 445555555432 1234555443344444332 56788887642 22222221 112233344566
Q ss_pred CCCEEEEE-eCCCeEEEEEC
Q 008939 352 DGKYILTG-GEDDLVQVWSM 370 (548)
Q Consensus 352 dg~~l~sg-s~dg~I~vwd~ 370 (548)
|.++|+.+ -.+..|..+.+
T Consensus 273 Dt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 273 DTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred CCceEEEecCCcceEEEEEe
Confidence 66544433 33455555544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=163.65 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=202.5
Q ss_pred CCCCceEEEecCCCC-CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC---cEEE
Q 008939 172 SNSNPVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD---GAFV 247 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~---~~l~ 247 (548)
++..+..++|++-.. +...+++..-...+.+|+...+. ...+++.. . +. -+......++|+-+.. -++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~---~ir~lq~y--~-D~-d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG---GIRLLQSY--A-DE-DHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc---ceeeeeec--c-CC-CCCcceEEEEEEecCCCCCeeEE
Confidence 334566666764322 12233433444568888776521 11222111 1 11 2567778888876533 2888
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVF 326 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vw 326 (548)
+++.-|.|+|.|+.+ ......+.+|...|+.+.|+|+ .++|++++.|..||+|
T Consensus 110 ~~G~~GvIrVid~~~--------------------------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVS--------------------------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred eecceeEEEEEecch--------------------------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 899999999999986 3456677889999999999995 5799999999999999
Q ss_pred eCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE--------------------------
Q 008939 327 DYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-------------------------- 377 (548)
Q Consensus 327 d~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~-------------------------- 377 (548)
|+++..++..+ .+|.+.|.++.|+++|.+|++++.|..|++|++...+...
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999998775 5799999999999999999999999999999997422100
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC-CCCeEEeeeecCCC-----------CCCc
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVVPLRRGPL-----------GGSP 443 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~-~~~~~~~~~~~~~~-----------~~~~ 443 (548)
+-.-|...|-|+.|- | .++++-+-++.|..|.. +-.+.+..+..+.. ...+
T Consensus 244 fst~diHrnyVDCvrw~---------g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---------G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred ccccccccchHHHHHHH---------h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 112467777777774 3 58999999999999987 33333222211111 1111
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceE--Eee--cCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV--AHR--VHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~--~~~--~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+|..- ....|...++.|...+.+.+||+...+|.. ++. .....|...+|+.|+ |+..++|++|.-||+-
T Consensus 309 Wfirf-~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRF-AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEE-eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 11110 123456677889999999999998877732 111 124578999999985 8899999999999964
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=162.04 Aligned_cols=289 Identities=14% Similarity=0.197 Sum_probs=195.2
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
..++++.++|.|++||..+ ++.+. ..+.++..++.++|..+ +.+.+.+|+.||.|++||++...+
T Consensus 41 ~~vav~lSngsv~lyd~~t-----g~~l~-------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-----GQLLE-------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccc-----hhhhh-------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--
Confidence 4699999999999999886 22221 12246788889999875 556899999999999999997432
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEE----CCCeEEEEeCCCCeE-EEe-eeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVG----RDGYLRVFDYSKEQL-ICG-GKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~----~dg~v~vwd~~~~~~-~~~-~~~~ 340 (548)
.+...|..|. .+..+++..-.++.+++|+ .|-.|.+||++..+. +.. ...|
T Consensus 107 ----------------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH 164 (376)
T KOG1188|consen 107 ----------------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH 164 (376)
T ss_pred ----------------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc
Confidence 2233344443 4666777766777888775 467899999997765 433 4679
Q ss_pred CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCce----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 341 YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRK----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 341 ~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
...|+++.|+|.. ++|++|+.||.|.|||+.... ++..+ .|...|..+.|.. ++ +..|.+-+
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~-------~~-----ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLS-------KK-----YKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeec-------CC-----cceEEEEE
Confidence 9999999999955 689999999999999997642 23333 4888999999986 55 14688889
Q ss_pred CCCeEEEEECCCCeEEeeeecCCCCC-------CceecCCCC-ccccCCeeeecccCCCCceeec------CCCCceEEe
Q 008939 416 QDTRLLLWDLEMDEIVVPLRRGPLGG-------SPTFSTGSQ-SAHWDNVCPVGTLQPAPSMRDV------PKLSPLVAH 481 (548)
Q Consensus 416 ~Dg~i~lwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~d~~~~~g~~~~~~~~~d~------~~~~~~~~~ 481 (548)
.+....+|+++.+.+...++.+.... ...+-.+.- ...-+.-...|..-+...++-+ ....++..+
T Consensus 232 H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 232 HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 99999999999888665554320000 000000000 0011111122222222233222 234566667
Q ss_pred ec-CCCCeeEEEEeC--CeEEEEECCCeEEEEeCCCCCccccCCCCcE
Q 008939 482 RV-HTEPLSGLIFTQ--ESVLTVCREGHIKIWMRPGVAESQSSSSETV 526 (548)
Q Consensus 482 ~~-h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v 526 (548)
++ |.+.|+++.|.. +.+.||++||.+++|..+...+..+.-.+..
T Consensus 312 ~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~esl 359 (376)
T KOG1188|consen 312 QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWTESL 359 (376)
T ss_pred cCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCcccccccccccc
Confidence 76 777888888875 4699999999999999866555555444433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=173.10 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=177.9
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
.|++......+++.++.. .|+|||++. +..++.+..|.+.|+|+.|+.. ..+|++++..|+|.|..+.+.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~---DeyiAsvs~gGdiiih~~~t~---- 153 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT---DEYIASVSDGGDIIIHGTKTK---- 153 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCC---cceeEEeccCCcEEEEecccC----
Confidence 444444555788887765 999999996 5578888889999999999998 779999999999999998772
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.+...... .....|.-+.|+|..+.+|.+++.+|.|.+||+.. ..|+
T Consensus 154 -~~tt~f~~------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g--------------------------~sp~ 200 (673)
T KOG4378|consen 154 -QKTTTFTI------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG--------------------------MSPI 200 (673)
T ss_pred -ccccceec------CCCCeEEEeecccccceeeEeeccCCeEEEEeccC--------------------------CCcc
Confidence 11111111 13456779999999988899999999999999975 2333
Q ss_pred eEe-eecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 293 ARW-HICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 293 ~~~-~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
..| ..|..+...++|+| +..+|++.+.|..|.+||....+....+. +..++..++|+++|.+|+.|...|.|..||+
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 333 56889999999999 66789999999999999999777666554 5678999999999999999999999999999
Q ss_pred CC-ceeEEeccCCCCCeEEEEEec
Q 008939 371 ED-RKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 371 ~~-~~~~~~~~~h~~~V~~v~~~p 393 (548)
+. ..++..+..|...|++|+|-|
T Consensus 280 R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 280 RSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ccCCCCceEeeecccceeEEEeee
Confidence 86 468889999999999999987
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-19 Score=167.45 Aligned_cols=239 Identities=17% Similarity=0.264 Sum_probs=179.2
Q ss_pred CCCEEEEecCC-eEEEEEccCCCC-CCeE------------------EEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDK-DPIK------------------SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~-~~i~------------------~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.|.++|.+..+ .|.|||+.-... .|.- ....|.+.+..++|+..- .+.|++|+.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF--RNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc--ceeEEecCCCceE
Confidence 47799999988 999999875320 1111 122466677788888774 5689999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.+||+.. ++...... .|...|.++.|+|....+|++|+.|++|.+.|.+.....
T Consensus 269 ~lWD~~~-----g~p~~s~~-------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------------- 322 (463)
T KOG0270|consen 269 KLWDVDT-----GKPKSSIT-------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------------- 322 (463)
T ss_pred EEEEcCC-----CCcceehh-------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------------
Confidence 9999987 33322222 389999999999998889999999999999999852211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCC-EEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGK-YIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~-~l~ 357 (548)
-..|+. .+.|..++|.| ....+++++.||+|+-+|++.. +++.++++|.+.|.+|++++.-. +|+
T Consensus 323 -----------~~~wk~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 323 -----------GKEWKF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred -----------CceEEe-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 112222 27899999999 4567788889999999999865 89999999999999999998654 688
Q ss_pred EEeCCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+++.|+.|++|++..-....... -.-+...|.+++| +-. ..++.|+..+.++|||+.+...+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~-------~~a-----~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP-------DVA-----FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCC-------Ccc-----eEEEecCccceEEEeecccChhH
Confidence 99999999999997544321111 1112355667766 331 58999999999999999887654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-16 Score=159.19 Aligned_cols=354 Identities=23% Similarity=0.345 Sum_probs=249.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCC-CceEEEe-cCCCCCCc-eEEEEEc-CCc
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS-NPVCHAF-DQDAKDGH-DLLIGLN-SGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~-~p~~~~~~-~l~~g~~-dg~ 199 (548)
....|...+..+.|.+.+..++..+.+ .+.+|+..... ..+..+..... .+..+.+ .++ +. .++.... ++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPD---GNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCC---cceEEeccCCCCcc
Confidence 456788899999999999999988755 99999998743 24555554332 5666666 555 43 4444344 899
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccce
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+.+|++... ...... . ..|...|.+++|+|++. .+++++. |+.+++|++..
T Consensus 136 ~~~~~~~~~----~~~~~~-~------~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------- 187 (466)
T COG2319 136 VKLWDLSTP----GKLIRT-L------EGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT---------------- 187 (466)
T ss_pred EEEEEecCC----CeEEEE-E------ecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC----------------
Confidence 999998740 011111 1 13788999999999998 7888875 99999999985
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE-eeeecCCceEEEEEccCCCEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~spdg~~l 356 (548)
...+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++.++
T Consensus 188 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (466)
T COG2319 188 ----------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLL 256 (466)
T ss_pred ----------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEE
Confidence 234556666889999999999987 55555899999999999887777 677787765 44899999899
Q ss_pred EEEeCCCeEEEEECCCcee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 357 LTGGEDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++++.|+.+++|++..... +..+.+|...|.++.|.| ++ ..+++++.|+.+.+||+..........
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-------DG------KLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-------CC------CEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 9999999999999987654 444467899999999998 77 567778889899999999887766665
Q ss_pred --cCCC-CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEE-EECCCeEEEE
Q 008939 436 --RGPL-GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLT-VCREGHIKIW 510 (548)
Q Consensus 436 --~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t-~s~Dg~I~iW 510 (548)
.... ...+.+ ... .......+..+..+.+|+............+ ..+..+.+.++ .++. +..++.+.+|
T Consensus 324 ~~~~~~~~~~~~~-~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 324 LKGHEGPVSSLSF-SPD----GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLW 397 (466)
T ss_pred ecccCCceEEEEE-CCC----CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECCCCCEEEEecCCCceEEE
Confidence 2222 333344 211 1122222245566777887776633332222 22788888872 2333 7899999999
Q ss_pred eCCCCCccccCCC--CcEE--EecCCCCceEeee
Q 008939 511 MRPGVAESQSSSS--ETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 511 ~~~~~~~~~~~~~--~~v~--~~s~d~~~l~s~~ 540 (548)
+............ ..+. .+++++..++++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (466)
T COG2319 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431 (466)
T ss_pred ecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence 9887664333221 3333 6778888777643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=190.86 Aligned_cols=250 Identities=15% Similarity=0.261 Sum_probs=195.9
Q ss_pred CCCceeEEeCCCCCE----EEEecCC-eEEEEEccC----CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 130 STSMTNTNFDGKGTY----IIFNVGD-AIFISDLNS----QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~----l~~~~~d-~v~vwd~~~----~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...-..++|.+.|.. |+.+..| .|-+||... .....+....-|.+.|..+.|++.. +++|++|..+|+|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q--~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ--GNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC--CceeeccCCCCcE
Confidence 444567888887776 6666677 999999765 2234566777789999999999983 5699999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.|||+.+.. .+ +........+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus 142 ~iWDlnn~~-tP---------~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----------------- 194 (1049)
T KOG0307|consen 142 LIWDLNKPE-TP---------FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----------------- 194 (1049)
T ss_pred EEeccCCcC-CC---------CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----------------
Confidence 999998621 11 111111247889999999988889999999999999999973
Q ss_pred eecCCCCCCCCeeEeeecC--CCeEEEEECCCC-CEEEEEECCC---eEEEEeCCCC-eEEEeeeecCCceEEEEEccCC
Q 008939 281 VAHPRYSKSNPIARWHICQ--GSINSIAFSTDG-TYLATVGRDG---YLRVFDYSKE-QLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g-~~l~s~~~dg---~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg 353 (548)
+++..+..|. ..+..++|+|+. ..|++++.|. .|.+||++.- ..+..+++|...|.++.|++.+
T Consensus 195 ---------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 195 ---------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred ---------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 2222222221 347789999965 4677776554 5899999753 4567788999999999999976
Q ss_pred -CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 354 -KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 354 -~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
++|++++.|+.|.+|+.++++.+..+....+|+..+.|+|. +- .+|+.++.||.|.|+.+....
T Consensus 266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr------~P------~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 266 PRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR------NP------SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC------Cc------chhhhheeccceeeeeeecCC
Confidence 78999999999999999999999999988999999999982 22 479999999999999987654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=156.88 Aligned_cols=251 Identities=20% Similarity=0.319 Sum_probs=182.7
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEe-------cCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWV-------PGGDGAF 246 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~-------p~~~~~l 246 (548)
....|+|+ |..|++-+.|..+.+|++...+...... ....+.+.. ......|++.+|- |+.. ++
T Consensus 53 kgckWSPD---GSciL~~sedn~l~~~nlP~dlys~~~~--~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~ 126 (406)
T KOG2919|consen 53 KGCKWSPD---GSCILSLSEDNCLNCWNLPFDLYSKKAD--GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LF 126 (406)
T ss_pred ccceeCCC---CceEEeecccCeeeEEecChhhcccCCC--CccccccceeEEeccCCEEEEEEeeeccccCCCccc-ee
Confidence 45679999 8899999999999999997643222100 000011110 1246778888886 4555 99
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++.+.+.-|++||.-+ +..+..+......+.+ ..-.+++|+|||.+|+.|. ...|++|
T Consensus 127 a~ssr~~PIh~wdaft-G~lraSy~~ydh~de~--------------------taAhsL~Fs~DGeqlfaGy-krcirvF 184 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFT-GKLRASYRAYDHQDEY--------------------TAAHSLQFSPDGEQLFAGY-KRCIRVF 184 (406)
T ss_pred eeccccCceeeeeccc-cccccchhhhhhHHhh--------------------hhheeEEecCCCCeEeecc-cceEEEe
Confidence 9999999999999876 6666555544332222 3456899999999999875 6789999
Q ss_pred eC-CCCeE--EEe-----eeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCC
Q 008939 327 DY-SKEQL--ICG-----GKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 327 d~-~~~~~--~~~-----~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
|+ +.|+- +.. -.+..+-+.|++|+|-. +.+++|+-...+-||.-..++++..+.+|.+.|+.+.|++
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e---- 260 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE---- 260 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc----
Confidence 99 55432 111 12235678999999955 4899999999999999999999999999999999999999
Q ss_pred CCCCCCccceeEEEEEEeC-CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~-Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
|| +.|.+|+. |-.|..||++.-. .
T Consensus 261 ---dG------n~lfsGaRk~dkIl~WDiR~~~----------------------------------------------~ 285 (406)
T KOG2919|consen 261 ---DG------NKLFSGARKDDKILCWDIRYSR----------------------------------------------D 285 (406)
T ss_pred ---Cc------CeecccccCCCeEEEEeehhcc----------------------------------------------c
Confidence 99 67777775 8899999998633 1
Q ss_pred ceEEeecCCC-CeeEEEEeCC----eEEEEECCCeEEEEeCCC
Q 008939 477 PLVAHRVHTE-PLSGLIFTQE----SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 477 ~~~~~~~h~~-~V~~l~fspd----~l~t~s~Dg~I~iW~~~~ 514 (548)
++..+..|.+ .-..|.|.-+ .|++|+.||.|++||+.+
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 2333444544 4445666543 489999999999999887
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-18 Score=165.44 Aligned_cols=303 Identities=15% Similarity=0.178 Sum_probs=220.1
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
-..+.+|.+.+.|+..+|. |..|++|+.||.|+||.+.+ ++.+.... ..+.|.||+|+|....-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~---G~wlasGsdDGtvriWEi~T-----gRcvr~~~--------~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPS---GEWLASGSDDGTVRIWEIAT-----GRCVRTVQ--------FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeEeccCCeEEEEEecCC---cceeeecCCCCcEEEEEeec-----ceEEEEEe--------ecceeEEEEecCCCCce
Confidence 3455678999999999997 88999999999999999998 34333222 36689999999998764
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCC-----Ccccc---cccc-eeeeecCCC--CCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDS-----SFPVI---KDQT-QFSVAHPRY--SKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~-----~~~~~---~~~~-~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+++...+..+.|-+..-+.+... .+... .... +........ ....-++..-.|...|..+.|+..|.||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 55555555577766544311111 11111 0000 001110000 1122245556678999999999999999
Q ss_pred EEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEE
Q 008939 315 ATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 315 ~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~ 391 (548)
++...+ ..|.|+++...+...-++--.+.|.++.|+|...+|++++. ..|+|||+..++.+..+.....+|..++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 998654 56889999877766667666788999999999999999864 68999999998888888878889999999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
+| .| -.|+.++.|+.++.+|+....
T Consensus 616 hp-------~G------Dnli~gs~d~k~~WfDldlss------------------------------------------ 640 (733)
T KOG0650|consen 616 HP-------NG------DNLILGSYDKKMCWFDLDLSS------------------------------------------ 640 (733)
T ss_pred cC-------CC------CeEEEecCCCeeEEEEcccCc------------------------------------------
Confidence 99 88 578899999999999987542
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe--CCCCC---------ccccCCCCc----EE--EecCC
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM--RPGVA---------ESQSSSSET----VL--STSSK 532 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~--~~~~~---------~~~~~~~~~----v~--~~s~d 532 (548)
+|...++.|...|++|+|++.+ +++|+.||++.|+. +.+.. ..+.+|... |+ .|.|.
T Consensus 641 ----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 641 ----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred ----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 3455667799999999999975 88999999999987 22211 122244433 55 57899
Q ss_pred CCceEeeecccc
Q 008939 533 DKPLLSSKVVTS 544 (548)
Q Consensus 533 ~~~l~s~~~~g~ 544 (548)
.-+|.+++..|-
T Consensus 717 qpWLfsAGAd~t 728 (733)
T KOG0650|consen 717 QPWLFSAGADGT 728 (733)
T ss_pred CceEEecCCCce
Confidence 999999877653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=166.03 Aligned_cols=250 Identities=18% Similarity=0.298 Sum_probs=198.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee--cc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ--QL 209 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~--~~ 209 (548)
.|..++|.|||..++.+.++.++|||.+.+. .+..+..|++.+.|++|+.+ |.++++|+.|..|.+|+-.- .+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~--llqtLKgHKDtVycVAys~d---GkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKD---GKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc--cccccccccceEEEEEEccC---CceeccCCCceeEEEeccccccee
Confidence 6788999999999999999999999999977 89999999999999999999 88999999999999997542 12
Q ss_pred cccccceeeeeeeccCCc-----------------------ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGS-----------------------VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
.-.....++...|++-.. -...+|.+++|..||. +|+.|..||+|.+-+...+...
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcce
Confidence 222333444555554211 1356889999999999 9999999999998865432111
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-----CEEEEEECCCeEEEEeCCCCeEEEeeeecC
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-----TYLATVGRDGYLRVFDYSKEQLICGGKSYY 341 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 341 (548)
. +.+-.+.+.+|.+++|+|.. ..+++.....++.+|.+. |+.+..-+.-.
T Consensus 168 --~----------------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~ 222 (1081)
T KOG1538|consen 168 --K----------------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALN 222 (1081)
T ss_pred --E----------------------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCC
Confidence 1 11112235789999999952 478888888999999886 66666545455
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
-...|+.+.++|++++.|+.|+.+++|- +.|-.+.++-..+.||+.|+..| ++ +.++.|+.||+|-
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-------Ns------Q~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-------NS------QYVVVGCQDGTIA 288 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-------CC------ceEEEEEccCeee
Confidence 5677999999999999999999999996 45767777776889999999999 88 7899999999999
Q ss_pred EEECC
Q 008939 422 LWDLE 426 (548)
Q Consensus 422 lwd~~ 426 (548)
.|++.
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 99874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=159.32 Aligned_cols=258 Identities=14% Similarity=0.198 Sum_probs=192.7
Q ss_pred CCCCCceeEEeCCCCC-EEEEecCC--eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGT-YIIFNVGD--AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~-~l~~~~~d--~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-+.+.|++++|+|... .++..+++ .|=+||+.++. .+.+..+.-|...|.++.|+|.. ...+++.+.||.|++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n--~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN--TSQIYSSSYDGTIRL 261 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC--hhheeeeccCceeee
Confidence 4578899999999877 45554444 99999996433 34566666677799999999984 568999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
-|++....+ .+.. .+ -....+..+.|+.+.. .++.+..=|.+.+||++.++.
T Consensus 262 ~D~~~~i~e---~v~s-----~~--~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s----------------- 313 (498)
T KOG4328|consen 262 QDFEGNISE---EVLS-----LD--TDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS----------------- 313 (498)
T ss_pred eeecchhhH---HHhh-----cC--ccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc-----------------
Confidence 999873221 1111 00 1345677888888888 566666667999999998542
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCceEEEEEccCCCEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
....|..|...|..++++| ...+||+++.|++++|||++.-. .+...-.|...|.+..|||++-.|+
T Consensus 314 --------~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 314 --------EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred --------cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence 3445667778999999999 56789999999999999997532 2233345889999999999988899
Q ss_pred EEeCCCeEEEEECC----CceeEEecc---CCCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 358 TGGEDDLVQVWSME----DRKVVAWGE---GHNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 358 sgs~dg~I~vwd~~----~~~~~~~~~---~h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+-+.|..|+|||.. .-.+...+. .+..+++ ...|+| |. .+|+++-.-..|-|+|-..+
T Consensus 386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-------~~------~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-------DY------NLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-------Cc------cEEEEeccCcceeEEcCCCC
Confidence 99999999999983 333343443 1223443 457888 76 68999999899999999988
Q ss_pred eEEeeeec
Q 008939 429 EIVVPLRR 436 (548)
Q Consensus 429 ~~~~~~~~ 436 (548)
+.+..+..
T Consensus 453 q~v~el~~ 460 (498)
T KOG4328|consen 453 QMVCELHD 460 (498)
T ss_pred EEeeeccC
Confidence 87776654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=156.73 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=210.0
Q ss_pred CCCCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCC-------CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 129 SSTSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKD-------PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~-------~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
...++..+.|.++.. .++++++| .|+||-++....+ -+..+..|...++++.|+|+ |..|++|+.+|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~---gelLASg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD---GELLASGGDGGE 88 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC---cCeeeecCCCce
Confidence 467888999998877 89998888 9999998764421 23445568889999999999 889999999999
Q ss_pred EEEEEeeec-------ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 200 VYSVSLRQQ-------LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 200 I~iwdl~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
|.+|..... ..+..++... ..+....|...|+.++|+|++. .+++++.|..+++||+..
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~---v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~---------- 154 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWV---VKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA---------- 154 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceE---EEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc----------
Confidence 999987621 0000111000 1112224889999999999999 999999999999999987
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-----e--------
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-----S-------- 339 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~-------- 339 (548)
...+..+..|..-+..++|.|-.+++++-+.|...+++.+...+.++... .
T Consensus 155 ----------------G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~ 218 (434)
T KOG1009|consen 155 ----------------GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG 218 (434)
T ss_pred ----------------ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence 34567778888999999999999999999999888888776544332211 0
Q ss_pred ------cC----CceEEEEEccCCCEEEEEeC----CC-----eEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 340 ------YY----GALLCCAWSMDGKYILTGGE----DD-----LVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 340 ------~~----~~v~~l~~spdg~~l~sgs~----dg-----~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
|. .-...++|+|||.+|++... .+ ..++++-.. .++...+.+...++..+.|+|..
T Consensus 219 ~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy---- 294 (434)
T KOG1009|consen 219 KSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY---- 294 (434)
T ss_pred ceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE----
Confidence 11 12456789999999887542 12 234454432 35667777777888888888731
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+.|---..... ++.+.- ..+..-.....+.+||.++..|+.
T Consensus 295 ---------~elrp~~~~~~--~~~lpy----------------------------rlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 295 ---------YELRPLSSEKF--LFVLPY----------------------------RLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred ---------EEecccccccc--cccccc----------------------------ceEEEEeecceEEEeccccccceE
Confidence 00000000000 111100 000011112334444444444544
Q ss_pred Eee-cCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc
Q 008939 480 AHR-VHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES 518 (548)
Q Consensus 480 ~~~-~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~ 518 (548)
... .|-..|++++|++|+ |+..+.||...+-.+...+.-
T Consensus 336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 443 478899999999994 899999999988887766543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=154.22 Aligned_cols=312 Identities=13% Similarity=0.174 Sum_probs=218.7
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCC----CCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQ----DKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~----~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
-..+|.+.|..+.|+.++++|+++++| .++||+++.. ..+||..... |..+|.|++|+.. ...|++|..++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~---N~~~~SG~~~~ 127 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE---NRFLYSGERWG 127 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---CeeEecCCCcc
Confidence 345789999999999999999999998 9999998641 1256766544 4489999999988 78899999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
+|.+.|+++. +.+.- ++.. -..+.|+.+..+|..+ .|++.+.++.|.+||.+........+.+.
T Consensus 128 ~VI~HDiEt~-----qsi~V---~~~~--~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A----- 191 (609)
T KOG4227|consen 128 TVIKHDIETK-----QSIYV---ANEN--NNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPA----- 191 (609)
T ss_pred eeEeeecccc-----eeeee---eccc--CcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeec-----
Confidence 9999999872 11111 1111 1466999999999976 99999999999999998633222211111
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE-EE------eeeecCCceEEEEEc
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL-IC------GGKSYYGALLCCAWS 350 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~-~~------~~~~~~~~v~~l~~s 350 (548)
........+.|+| ...+|++.+..+-+.+||.+..+. +. .++........+.|+
T Consensus 192 ------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 192 ------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred ------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 1125577889999 567888999999999999986542 11 122212223567899
Q ss_pred cCCCEEEEEeCCCeEEEEECCCcee-EEeccCCC-------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKV-VAWGEGHN-------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~-~~~~~~h~-------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
|+|..|++--....-.+||+...++ +..+. |+ ..+.+++|.- . +.+++|+.+-.|.+
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--------D------~~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--------D------YTVATGSDHWGIHI 318 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--------c------eeeeccCcccceEE
Confidence 9999988877777778899987554 33332 43 3566778863 3 67999999999999
Q ss_pred EECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 423 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 423 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
|.+.....-.-+. .+|.... -.--++-....++.+++|..-++.|.|+|. .|++
T Consensus 319 WklP~~~ds~G~~-----------------------~IG~~~~-~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 319 WKLPRANDSYGFT-----------------------QIGHDEE-EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred EecCCCccccCcc-----------------------ccCcchh-hCchhheecceeEEEecccccccceeecCCcceEec
Confidence 9987543211110 0111000 000011122457788999999999999996 4888
Q ss_pred EECCCeEEEEeC
Q 008939 501 VCREGHIKIWMR 512 (548)
Q Consensus 501 ~s~Dg~I~iW~~ 512 (548)
.+-+..++||.-
T Consensus 375 SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 375 SGVENSFKLWSD 386 (609)
T ss_pred cchhhheecccc
Confidence 899999999983
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-17 Score=165.75 Aligned_cols=283 Identities=16% Similarity=0.154 Sum_probs=198.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.++||++... ..|-..+. .+..++|+.|+|.. ..+|+.|..+|+|.+||++.....+-..+ ......|..
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~s~l------s~~~~sh~~ 292 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPPSGL------SALEVSHSE 292 (555)
T ss_pred eEEEEecCCC-CCceEEEe-cCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCCccc------ccccccCCc
Confidence 5899999986 23444444 67899999999984 56899999999999999987422110111 111123899
Q ss_pred ceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-
Q 008939 232 RCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST- 309 (548)
Q Consensus 232 ~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp- 309 (548)
+|+.+.|..+-. .-|++++.||.|..|+++.-..+......-... ......+ ....+++++|.+
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------~~~~~~~--~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------HKGQQSS--KAVGATSLKFEPT 358 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------ccccccc--cccceeeEeeccC
Confidence 999999987544 248999999999999887632211111100000 0000001 125788999998
Q ss_pred CCCEEEEEECCCeEEEEeC---CCCe-----EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEecc
Q 008939 310 DGTYLATVGRDGYLRVFDY---SKEQ-----LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~---~~~~-----~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+...+++|+.+|.|..-+- +... ....+..|.+.|.++.++|-+..++..+.|..|+||+.. ...++..+.
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 6678999999999887333 2222 133456688999999999988765555559999999998 677888888
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
.+...|++++|+|. - ...|+++..||.|.+||+......
T Consensus 439 ~~~~~v~~vaWSpt-------r-----pavF~~~d~~G~l~iWDLl~~~~~----------------------------- 477 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPT-------R-----PAVFATVDGDGNLDIWDLLQDDEE----------------------------- 477 (555)
T ss_pred hccceeeeeEEcCc-------C-----ceEEEEEcCCCceehhhhhccccC-----------------------------
Confidence 88899999999982 1 158999999999999999764422
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
|+.....+....+.+.|++++ |+.|...|.+.+|+++..
T Consensus 478 ----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 478 ----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ----------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 222233345667778888865 888889999999998643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-17 Score=144.88 Aligned_cols=260 Identities=19% Similarity=0.224 Sum_probs=180.8
Q ss_pred CCCceeEEeCC---CCCEEEEecC-----CeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 130 STSMTNTNFDG---KGTYIIFNVG-----DAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~---~g~~l~~~~~-----d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.-.++.+.|+. ...+|+.++- +.|.|-.+.....+.+..-.| ++-.++.+.|.|+.+...-=+.++.+..+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~L 123 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFL 123 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeE
Confidence 34556677762 3445665542 367777766443334443333 66788999999996522112234455689
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++|.+...... -.+......++ ..-+..++++..|+.-..+++.+++-|.++.|||+..+..
T Consensus 124 RlWri~~ee~~--~~~~~~L~~~k-ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------- 185 (364)
T KOG0290|consen 124 RLWRIGDEESR--VELQSVLNNNK-NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------- 185 (364)
T ss_pred EEEeccCcCCc--eehhhhhccCc-ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---------------
Confidence 99998742111 11111111222 2236789999999998888999999999999999987311
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeE---EEeeeecCCceEEEEEccCC-CE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDG-KY 355 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg-~~ 355 (548)
...-..+-.|...|..++|...+ +.+|+++.||.+|+||++.-+- +..-.....++..++|++.. ++
T Consensus 186 --------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 186 --------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred --------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH
Confidence 01123455688999999999854 5899999999999999986543 32222224578899999854 56
Q ss_pred EEEEeCC-CeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 356 ILTGGED-DLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 356 l~sgs~d-g~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+|+-..| ..|.|.|++.. .++.++++|.+.|++|+|.|. .. ..|+++|.|.++.+||+..
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh------S~------~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH------SS------SHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC------CC------ceeeecCCcceEEEEeccc
Confidence 7765444 67999999874 688999999999999999992 22 6899999999999999975
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-15 Score=154.56 Aligned_cols=322 Identities=23% Similarity=0.363 Sum_probs=230.3
Q ss_pred CceeEEe-CCCCC-EEEEecC-C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEee
Q 008939 132 SMTNTNF-DGKGT-YIIFNVG-D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 132 ~v~~~~~-~~~g~-~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~ 206 (548)
.+..+.+ .+++. ++..... + .+++|++... ...+..+..+...+.+++|+|+ +..++.+.. ++.+++|++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLIRTLEGHSESVTSLAFSPD---GKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCC-CeEEEEEecCcccEEEEEECCC---CCEEEecCCCCCceEEEEcC
Confidence 4555555 77777 4444343 5 9999999861 1367778889999999999999 657888875 9999999987
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. .+.+.. .. .|...|.+++|+|++..++++++.|+.|++||....
T Consensus 187 ~-----~~~~~~-~~------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----------------------- 231 (466)
T COG2319 187 T-----GKPLST-LA------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----------------------- 231 (466)
T ss_pred C-----CceEEe-ec------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-----------------------
Confidence 5 111111 11 278899999999988734444589999999976631
Q ss_pred CCCCCee-EeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 287 SKSNPIA-RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 287 ~~~~~~~-~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+. .+..|...+ ...|++++.++++++.|+.+++|++..... +..+..|...+.++.|.|++..+++++.|+.
T Consensus 232 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 232 ---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred ---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence 1122 345555554 338999998999999999999999986654 4444678889999999998888888999989
Q ss_pred EEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCC
Q 008939 365 VQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
+.+||+.......... .|...|..+.|.+ ++. ..+..+..|+.+.+|++.................
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (466)
T COG2319 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSP-------DGS-----LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375 (466)
T ss_pred EEEEEcCCCceEEEeeecccCCceEEEEECC-------CCC-----EEEEeecCCCcEEeeecCCCceeEEecCCceEEE
Confidence 9999999887666655 7888899999943 320 3344446889999999998873322222111222
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.+.. . ......+..+..+.+|+............+...+....+.++. +++++.++.+++|++..
T Consensus 376 ~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 376 VSFSP-D-----GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEECC-C-----CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 23322 1 1112245667788899988877776665544678888888864 77789999999999887
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=154.65 Aligned_cols=166 Identities=17% Similarity=0.295 Sum_probs=141.8
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
+|..+|.+++|+|.+.+.||+|++|.+|.||++..++.... ...|+..+.+|+..|.-++|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------------------ltepvv~L~gH~rrVg~V~w 139 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------------------LTEPVVELYGHQRRVGLVQW 139 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------cccceEEEeecceeEEEEee
Confidence 59999999999999988999999999999999976443211 23689999999999999999
Q ss_pred CC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 308 ST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 308 sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
+| -.+.|++++.|..|.+||+.+++.+.++. |.+.|.++.|+.||.+|++.+.|..|+|||.++++.+....+|.+.-
T Consensus 140 HPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 140 HPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred cccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 99 45789999999999999999999888887 99999999999999999999999999999999999999888887632
Q ss_pred -EEEEEecCCCCCCCCCCccceeEEEEEEe----CCCeEEEEECCC
Q 008939 387 -SGVAFDSYWSQPNSDGTAETVMYRFGSVG----QDTRLLLWDLEM 427 (548)
Q Consensus 387 -~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~Dg~i~lwd~~~ 427 (548)
..+.|-. +| . |++.+ .+.++-|||...
T Consensus 219 ~~Raifl~-------~g------~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 219 PARAIFLA-------SG------K-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred cceeEEec-------cC------c-eeeeccccccccceeccCccc
Confidence 3455665 77 4 55554 467899998654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=149.72 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=187.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.++|++.+|++|...++.+... .|.||.....+ .++.+.+.-|...+++++|+|. .+.|++++.|..-++|....
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~---snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK---SNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC---CCceeEccCCCCccccccCC
Confidence 5788999999999999998887 99999988766 7889999999999999999999 77899999999999998743
Q ss_pred -cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 208 -QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
..+. +..-..+ ++...+++.|+|.++ .|++|+....|.||-++.+..- .....++
T Consensus 87 ~~~Wk---ptlvLlR-------iNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdW-WVsKhik------------ 142 (361)
T KOG1523|consen 87 GGTWK---PTLVLLR-------INRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDW-WVSKHIK------------ 142 (361)
T ss_pred CCeec---cceeEEE-------eccceeeEeecCcCc-eEEeccCccEEEEEEEecccce-ehhhhhC------------
Confidence 2222 2222222 688899999999998 9999999999999998863321 1111111
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----C-------------CeEEEeeeecCCceEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-----K-------------EQLICGGKSYYGALLCCA 348 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-----~-------------~~~~~~~~~~~~~v~~l~ 348 (548)
+.+...|.+++|+|++-+|++|+.|+.+|||..- + |+++..+....+.+..+.
T Consensus 143 ---------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 143 ---------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred ---------CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 1123789999999999999999999999999652 1 223334434567899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|+|+|..|+-.+.|..+.+-|-.... .+..+..-.-+..++.|-. + ..++.++.|..=.++..
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-------e-------~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-------E-------NSVVAAGYDCGPVLFVT 277 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-------C-------CceeecCCCCCceEEEe
Confidence 99999999999999999999987654 3444433336777777754 3 35777777754444443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=149.62 Aligned_cols=264 Identities=16% Similarity=0.102 Sum_probs=186.0
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|.+.++++.|..+++++.-.....|.+|++.+.. ++..++ ++...++.+.--|+ ..|.+-+.|+.+.+|++
T Consensus 11 Rp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r--~~~~~r~~g~~~it~lq~~p~----d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTER--DLPLIRLFGRLFITNLQSIPN----DSLDTQGRDPLLILWTI 84 (323)
T ss_pred ccccchheehhhccchhhhcccccceEEEEEeecCc--cchhhhhhccceeeceeecCC----cchhhcCCCceEEEEEc
Confidence 378899999999988874433334499999999854 666666 56666676666664 35788888899999987
Q ss_pred eec-------------------ccccccceeeeeeeccC----------------------CcccCcceEEEEEecCCC-
Q 008939 206 RQQ-------------------LQDVGKKLVGAHHYNKD----------------------GSVNNSRCTSVTWVPGGD- 243 (548)
Q Consensus 206 ~~~-------------------~~~~~~~~~~~~~~~~~----------------------~~~~~~~v~~l~~~p~~~- 243 (548)
.-. +....++......+... .....+.+.|..|..+..
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 641 00001111000001000 001345677777544332
Q ss_pred -cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 244 -GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 244 -~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
-+|++|.++|.|.+||+..+.... .++.. ...+.....|..+|.++.|.+.-..=++++.+..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~-~~~~~---------------~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKII-QLPQS---------------SKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceee-ccccc---------------cccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 267788999999999998742221 11110 1223344567799999999886556678888889
Q ss_pred EEEEeCCCC--eE--EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCC
Q 008939 323 LRVFDYSKE--QL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 323 v~vwd~~~~--~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
+..|++... .+ ...+.-....|..+..-||++.+|+++.|+.||||+.++.+++..++-|.+.|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp----- 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP----- 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-----
Confidence 999998643 22 122223345688899999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|. .++++++.|++|.+|++
T Consensus 304 --d~------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 --DC------ELMAAASKDARISLWKL 322 (323)
T ss_pred --CC------chhhhccCCceEEeeec
Confidence 86 59999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=151.30 Aligned_cols=285 Identities=15% Similarity=0.208 Sum_probs=200.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
...++..+.|.++..+.|++|+.|..|++|.+......... .+-..+..+..|+..|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----------------~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----------------MKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----------------eeEEEeecccCCcceeEEEEEc
Confidence 36789999999998889999999999999998763221100 0123355677899999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCC--------C--------CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 309 TDGTYLATVGRDGYLRVFDYS--------K--------EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
|+|.+||+|+.+|.|.+|-.. + ......+.+|...|..++|+||+.++++++-|..+++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999765 2 223456778999999999999999999999999999999999
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---------CC----
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---------PL---- 439 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---------~~---- 439 (548)
++.++.+..|...|..++|+| -+ +++++-+.|...+.+.+...+.+..+... ..
T Consensus 155 G~l~~~~~dh~~yvqgvawDp-------l~------qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~ 221 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDP-------LN------QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKST 221 (434)
T ss_pred ceeEeeccccccccceeecch-------hh------hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCccee
Confidence 999999999999999999999 65 68888888887777777655544333210 00
Q ss_pred -----------CCCceecCCCCc-cccCCeeeeccc--CCCCceeecC-CCCceEEeecCCCCeeEEEEeCC--------
Q 008939 440 -----------GGSPTFSTGSQS-AHWDNVCPVGTL--QPAPSMRDVP-KLSPLVAHRVHTEPLSGLIFTQE-------- 496 (548)
Q Consensus 440 -----------~~~~~~~~~~~~-~~~d~~~~~g~~--~~~~~~~d~~-~~~~~~~~~~h~~~V~~l~fspd-------- 496 (548)
-..+.|++++.. ....+.+..+.. ....++++-. ...|...+..-..++..+.|+|=
T Consensus 222 rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~ 301 (434)
T KOG1009|consen 222 RLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLS 301 (434)
T ss_pred eeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccc
Confidence 012345555531 112222222211 1223333322 33567777777777888888761
Q ss_pred -----------eEEEEECCCeEEEEeCCCCCcc---ccCCCCcEE--EecCCCCceEeeeccc
Q 008939 497 -----------SVLTVCREGHIKIWMRPGVAES---QSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 497 -----------~l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
.++.......|.|+|.+..... ..-|-..+. +|++||..|+.+...|
T Consensus 302 ~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 302 SEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred ccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 1344455568899997654311 113334444 8899998887776654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=147.05 Aligned_cols=225 Identities=14% Similarity=0.179 Sum_probs=166.6
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 381 (548)
-.|+.|++.|.+||+|..||.|.|||+.+...-..+.+|-.+|.+++||+||+.|++++.|..|.+||+..+.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7799999999999999999999999999988877889999999999999999999999999999999999999999988
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC-ccccCCeeee
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ-SAHWDNVCPV 460 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~ 460 (548)
..++|+...|+|. +- +..+..-.+..-.+-++..+.- ..+.. .....+..+.... ..-....+.+
T Consensus 105 f~spv~~~q~hp~------k~------n~~va~~~~~sp~vi~~s~~~h-~~Lp~-d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 105 FDSPVWGAQWHPR------KR------NKCVATIMEESPVVIDFSDPKH-SVLPK-DDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred ccCccceeeeccc------cC------CeEEEEEecCCcEEEEecCCce-eeccC-CCccccccccccccccCCCCEEEE
Confidence 7899999999992 22 2333333344444445543211 11111 1122222222111 1112356789
Q ss_pred cccCCCCceeecCCCCceEEeecCC-CCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC------ccccCC---------
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHT-EPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA------ESQSSS--------- 522 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~-~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~------~~~~~~--------- 522 (548)
|+..+.+.+++..+.+.+..++.-. ..|..+.|+.. .|+.-+.|..||.+++..-. +....|
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999999888766 78888998875 59999999999999975321 111111
Q ss_pred CCcEEEecCCCCceEeeec
Q 008939 523 SETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 523 ~~~v~~~s~d~~~l~s~~~ 541 (548)
...-..||.||++++.++.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred hhhheeecCCccEEEeccc
Confidence 1122278999999998864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=144.09 Aligned_cols=255 Identities=13% Similarity=0.200 Sum_probs=176.2
Q ss_pred CceEEEecCCCCCCceEEEEEcC----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC----cEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD----GAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~----~~l 246 (548)
.+..+.|+.......+|++|+-. +.|.|..+... .+ .++.... .-|.-+++.+-|.|+.. .+|
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~---s~-e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDED---SG-ELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccC---CC-ceeccCC-----CCCCCCccceEecCCccccCcchh
Confidence 44555565432235678888743 55777766531 11 1211111 13788999999999874 255
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRV 325 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~v 325 (548)
++++ ..+++|.+..+......-..+... .-..+..+++++.|+. +.++|.+.+-|-++.|
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~-----------------kns~~~aPlTSFDWne~dp~~igtSSiDTTCTi 177 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNN-----------------KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTI 177 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccC-----------------cccccCCcccccccccCCcceeEeecccCeEEE
Confidence 5544 479999987532111000000000 0011237899999997 7889999999999999
Q ss_pred EeCCCCe---EEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee---EEeccCCCCCeEEEEEecCCCCC
Q 008939 326 FDYSKEQ---LICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV---VAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 326 wd~~~~~---~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
||++++. +...+.+|...|..++|...+ +.+|+.+.||.||+||++..+. +.+-.....+...++|++.
T Consensus 178 Wdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq---- 253 (364)
T KOG0290|consen 178 WDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ---- 253 (364)
T ss_pred EEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC----
Confidence 9999873 355678899999999999866 4789999999999999987643 2222222457778888762
Q ss_pred CCCCCccceeEEEEEEeCC-CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 399 NSDGTAETVMYRFGSVGQD-TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~D-g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
|- ++|++-..| ..|.|-|++... .+
T Consensus 254 --Dp------nymATf~~dS~~V~iLDiR~P~----------------------------------------------tp 279 (364)
T KOG0290|consen 254 --DP------NYMATFAMDSNKVVILDIRVPC----------------------------------------------TP 279 (364)
T ss_pred --Cc------hHHhhhhcCCceEEEEEecCCC----------------------------------------------cc
Confidence 33 677777766 468888887533 35
Q ss_pred eEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 008939 478 LVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~ 515 (548)
+..+++|...|++|+|.|. .|.|+++|.++.|||++.-
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 6778899999999999996 4999999999999998654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-17 Score=144.29 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=183.6
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEE-ecC---C-----eEEEEEccCCC-------CCCeEEEe-cCCCCceEEEe
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIF-NVG---D-----AIFISDLNSQD-------KDPIKSIH-FSNSNPVCHAF 181 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~-~~~---d-----~v~vwd~~~~~-------~~~i~~~~-~~~~~~~~~~~ 181 (548)
+++.+-.+-.|.+.|-.++-+|....|++ ... + ...||.+...- .+.+..+. -+-..+.|+.|
T Consensus 52 s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 52 SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE
Confidence 44555677788889999998887665554 222 1 46799987532 12233332 12348899999
Q ss_pred cCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 008939 182 DQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 182 ~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~ 261 (548)
.|+ +..|+ +..+..|.+|++... .++.......... .+....++-+|+|..+...+....|+++..||++
T Consensus 132 ~Pn---s~kla-sm~dn~i~l~~l~es-----s~~vaev~ss~s~-e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 132 EPN---SDKLA-SMDDNNIVLWSLDES-----SKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred cCC---CCeeE-EeccCceEEEEcccC-----cchheeecccccc-cccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 998 44455 444899999999862 2322222211121 2577889999999333234445567999999999
Q ss_pred CCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCC-eEEEeeee
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKE-QLICGGKS 339 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~-~~~~~~~~ 339 (548)
+..+ ....-+.|...|..+.|+|+.+ +|++++.||.|+|||.+.- ..+..+.+
T Consensus 202 T~~~-------------------------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~ 256 (370)
T KOG1007|consen 202 TMKK-------------------------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG 256 (370)
T ss_pred chhh-------------------------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC
Confidence 7422 1222345667899999999765 6889999999999999854 56888999
Q ss_pred cCCceEEEEEccCC-CEEEEEeCCCeEEEEECCC-----------------------------ceeEEeccCCCCCeEEE
Q 008939 340 YYGALLCCAWSMDG-KYILTGGEDDLVQVWSMED-----------------------------RKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 340 ~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~-----------------------------~~~~~~~~~h~~~V~~v 389 (548)
|..+|.++.|+|.. ++|++|+.|..|.+|.... ...+.++..|++.|+++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 99999999999954 5788999999999996421 01334666799999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+.. |- -.|++-+.||.+.|=.+.
T Consensus 337 aWSsa------dP------WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSA------DP------WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccC------CC------eeEEEeccCceEEeecCC
Confidence 99751 33 688999999999886654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=145.65 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=179.2
Q ss_pred CCCCCCceeEEeCC-----CCCEEEEecCCeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCC-CceEEEEE
Q 008939 127 SSSSTSMTNTNFDG-----KGTYIIFNVGDAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKD-GHDLLIGL 195 (548)
Q Consensus 127 ~~h~~~v~~~~~~~-----~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~-~~~l~~g~ 195 (548)
-.|..++..++|++ .-..+++.+++.+.+|...... .++.++- ++.....++|.-+..+ .-+|++|+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 35677888888872 2345666677799999987633 2333221 4456677888887664 56788899
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.-|.|+|.|+.+. + +.+....|...|+.|+++|+..+++++++.|..|++|+++++
T Consensus 113 ~~GvIrVid~~~~------~------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~------------ 168 (385)
T KOG1034|consen 113 YLGVIRVIDVVSG------Q------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD------------ 168 (385)
T ss_pred ceeEEEEEecchh------h------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC------------
Confidence 9999999998862 1 222233589999999999999889999999999999999872
Q ss_pred cceeeeecCCCCCCCCeeE---eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE------E------------
Q 008939 276 QTQFSVAHPRYSKSNPIAR---WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL------I------------ 334 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~------~------------ 334 (548)
..+.. ..+|.+.|.++.|+++|.+|++++.|..|++|++...+. .
T Consensus 169 --------------~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 169 --------------VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred --------------eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 22333 356889999999999999999999999999999973210 0
Q ss_pred ----Eee------eecCCc------------------------------------------------------eE--EEE
Q 008939 335 ----CGG------KSYYGA------------------------------------------------------LL--CCA 348 (548)
Q Consensus 335 ----~~~------~~~~~~------------------------------------------------------v~--~l~ 348 (548)
..+ .-|..+ |. ..+
T Consensus 235 pt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred CccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 000 001111 11 123
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeE--Eecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVV--AWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~--~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|.|-++.||.|...|.|.+||++..++. .++. .-...|.+.+|+. || ..|+..+.|+.|.-||
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-------dg------s~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-------DG------SILVLVCDDGTVWRWD 381 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-------cC------cEEEEEeCCCcEEEEE
Confidence 4445667888999999999999876552 1222 1346889999998 99 7999999999999999
Q ss_pred CC
Q 008939 425 LE 426 (548)
Q Consensus 425 ~~ 426 (548)
..
T Consensus 382 rv 383 (385)
T KOG1034|consen 382 RV 383 (385)
T ss_pred ee
Confidence 64
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=144.35 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=188.6
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+|...++-+...++|+.|..+ .+|+.|...|.|.+|++.+. +.... .+ ..+...|+.+.-.|++
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~----~rL~sg~~~G~V~~w~lqt~-----r~~~~-~r-----~~g~~~it~lq~~p~d- 68 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN----ERLMSGLSVGIVKMWVLQTE-----RDLPL-IR-----LFGRLFITNLQSIPND- 68 (323)
T ss_pred CCeeEeccccchheehhhccc----hhhhcccccceEEEEEeecC-----ccchh-hh-----hhccceeeceeecCCc-
Confidence 466677777788999999876 35999999999999999872 21111 10 0267889999999986
Q ss_pred cEEEEEeCCCcEEEEEcCCCCC-----------CCCCccccccc---ceeeeecCCCC---------CCCCeeEe----e
Q 008939 244 GAFVVGHADGNLYVYEKSKDGA-----------GDSSFPVIKDQ---TQFSVAHPRYS---------KSNPIARW----H 296 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~----~ 296 (548)
.|.+-+.|+.+.+|++.-..- ....+...+.. .+....+.... +...++.. .
T Consensus 69 -~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 69 -SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred -chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 488999999999999875110 01111111111 11111111111 11111111 1
Q ss_pred ecCCCeEEEEECC-CCC--EEEEEECCCeEEEEeCCCCe----------EEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 297 ICQGSINSIAFST-DGT--YLATVGRDGYLRVFDYSKEQ----------LICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 297 ~h~~~v~~~~~sp-~g~--~l~s~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+.++|..+.- ++. +|+.|.++|.+.+||+.++. .+.....|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 1347788887654 443 46778899999999999873 3334456889999999988666678888999
Q ss_pred eEEEEECCCc--ee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 364 LVQVWSMEDR--KV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 364 ~I~vwd~~~~--~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
.+..|+++.. .+ ..++.-.+-.|..+...| |+ +.++++|.|+.|++|..++...+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-------D~------KIlATAGWD~RiRVyswrtl~pL-------- 286 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-------DG------KILATAGWDHRIRVYSWRTLNPL-------- 286 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEcc-------CC------cEEeecccCCcEEEEEeccCCch--------
Confidence 9999998653 21 122222345688889999 99 89999999999999998876544
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..++-|.+.|++++|+|+. ++.++.|++|.+|++
T Consensus 287 ---------------------------------------AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 ---------------------------------------AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------------------------------------hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4455699999999999984 899999999999996
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-16 Score=161.33 Aligned_cols=302 Identities=12% Similarity=0.147 Sum_probs=202.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
..+...+.|+|-...++++.++ .|+|||.+.+. .+..+. +....|+.+.+-.+ .+..++++|+.||.|+||+-
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGR--LLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCc--eeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEecc
Confidence 3356678899999999988866 99999999855 554443 34456777776543 23678999999999999975
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
-...+..-+.+..............+.=.-+.|..... .|++++.-..|+|||..++... ..++.-
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~-~diP~~------------ 1206 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVV-ADIPYG------------ 1206 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeE-eecccC------------
Confidence 43222222222221111111111112224567888777 6666666789999999873221 111110
Q ss_pred CCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC---eEEEeeeecCCc--eEEEEEccCCCE-EEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGA--LLCCAWSMDGKY-ILT 358 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~--v~~l~~spdg~~-l~s 358 (548)
-...|+++.-+. .|+.|+.|..||.|++||.+.. ..+...+.|... |..+.+.+.|-- |++
T Consensus 1207 ------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1207 ------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred ------------CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence 124566665443 5799999999999999999754 356778888887 999999987754 999
Q ss_pred EeCCCeEEEEECCCceeEEec--cCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 359 GGEDDLVQVWSMEDRKVVAWG--EGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~--~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
|+.||.|++||++.......+ ..| .+.++++..|+ +. ..+++|+. +.|+||++... .+..
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-------ha------piiAsGs~-q~ikIy~~~G~-~l~~ 1339 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-------HA------PIIASGSA-QLIKIYSLSGE-QLNI 1339 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeecc-------CC------CeeeecCc-ceEEEEecChh-hhcc
Confidence 999999999999974222222 223 23589999998 66 57888887 99999998643 3333
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
++.. ..| +......+.+++|+|.. |+.|+.|..|.||.
T Consensus 1340 ~k~n-----~~F-----------------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1340 IKYN-----PGF-----------------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cccC-----ccc-----------------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 3220 000 00123457999999974 88899999999998
Q ss_pred CCCC
Q 008939 512 RPGV 515 (548)
Q Consensus 512 ~~~~ 515 (548)
.+..
T Consensus 1380 ~~k~ 1383 (1387)
T KOG1517|consen 1380 CEKP 1383 (1387)
T ss_pred cCCc
Confidence 7654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-14 Score=135.76 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=176.0
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEEEEeeec
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~iwdl~~~ 208 (548)
..+....|+.+...|..++.+..++|..+... ......-....|.-+-|+.. ++++.+.+.. +++++++.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~--k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk- 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE--KCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKK- 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchH--HhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEccc-
Confidence 34556779999999999999999999988633 22222223345566667644 5655555433 77777664
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+..++... -...|.+|.++.+ .|+++-.+ .|+|||++...- ..
T Consensus 78 -----~~~ICe~~-------fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~Mkl-Lh-------------------- 120 (391)
T KOG2110|consen 78 -----KTTICEIF-------FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKL-LH-------------------- 120 (391)
T ss_pred -----CceEEEEe-------cCCceEEEEEccc---eEEEEEcc-cEEEEeccccee-eh--------------------
Confidence 33444443 3678889998765 56666654 499999987321 11
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe-E
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL-V 365 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~-I 365 (548)
.+..+..+...+.++.+++++.+|+.-+ ..|.|.+||..+-+.+..+..|.+.+-|++|+++|.+||++++.|+ |
T Consensus 121 --TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 121 --TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred --hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 1222222335576777777778888743 4689999999999999999999999999999999999999999986 6
Q ss_pred EEEECCCceeEEeccCC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 366 QVWSMEDRKVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
||+++.+++.+.+|+.- -..|.+++|+| |+ .+|++.+..++|.+|.+....
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-------ds------~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-------DS------QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECC-------CC------CeEEEecCCCeEEEEEecccc
Confidence 99999999999998743 34678999999 98 788899999999999998755
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=148.43 Aligned_cols=196 Identities=12% Similarity=0.157 Sum_probs=143.7
Q ss_pred CEEEEecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
..++++.. ..|++||..++. .+..+.+++..+..++|.... ..+.+++++.||.|++||++.+...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARI------S 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhhe------e
Confidence 34555544 499999999955 888999999999999998753 2678999999999999999984211111 1
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGH----ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
+... ...+..|++....+. ++++|. .|-.|.+||++...+.. -.....
T Consensus 112 ~~~~---~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l------------------------~~~~eS 163 (376)
T KOG1188|consen 112 WTQQ---SGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL------------------------RQLNES 163 (376)
T ss_pred ccCC---CCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchh------------------------hhhhhh
Confidence 1111 135667777766666 777775 46789999999743211 122356
Q ss_pred cCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE---EEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCC
Q 008939 298 CQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 298 h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~ 372 (548)
|...|+++.|+| +.++|++|+.||.|.+||+..... +...-.|...|.++.|..++ +.|.+-+......+|+++.
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 789999999999 678999999999999999975421 22223467779999999887 4588888899999999876
Q ss_pred cee
Q 008939 373 RKV 375 (548)
Q Consensus 373 ~~~ 375 (548)
+.+
T Consensus 244 ~~~ 246 (376)
T KOG1188|consen 244 GSE 246 (376)
T ss_pred CCh
Confidence 543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=144.35 Aligned_cols=214 Identities=20% Similarity=0.320 Sum_probs=170.7
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc-cccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL-QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
+..+......++|++|+++ ...++++-.+.+|.||...... +.....+ .-|...|++|+|.|..+
T Consensus 3 ~~~~~~~~~pitchAwn~d---rt~iAv~~~~~evhiy~~~~~~~w~~~htl----------s~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSD---RTQIAVSPNNHEVHIYSMLGADLWEPAHTL----------SEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred eEEeeeccCceeeeeecCC---CceEEeccCCceEEEEEecCCCCceeceeh----------hhhCcceeEEeecCCCC-
Confidence 3445556778999999999 7789999999999999987632 2222221 12889999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|++++.|.+-+||....++. -.|...+..++...+++.|+|.++.||+|+....|.
T Consensus 69 rIvtcs~drnayVw~~~~~~~-----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGT-----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred ceeEccCCCCccccccCCCCe-----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence 899999999999999865332 345556666779999999999999999999999999
Q ss_pred EEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-----CC-------------ceeEEeccCC
Q 008939 325 VFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-----ED-------------RKVVAWGEGH 382 (548)
Q Consensus 325 vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-----~~-------------~~~~~~~~~h 382 (548)
||-++..+- .+.-+.+...|++++|+|++-+|++|+.|+..+|+.. ++ |+++.++...
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 998875432 1233456788999999999999999999999999864 21 2344445456
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.++|..+.|+| +| ..|+-.+.|..+.+=|.....
T Consensus 206 ggwvh~v~fs~-------sG------~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 206 GGWVHGVLFSP-------SG------NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCceeeeEeCC-------CC------CEeeEecCCCceEEeecCCCc
Confidence 78999999999 88 799999999999999987664
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=158.73 Aligned_cols=230 Identities=17% Similarity=0.204 Sum_probs=179.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
++..|.+.+..++|.|. ...|++++.||.|.+|++........+.+.... ....|.++|.|++..++++ .++
T Consensus 289 tl~s~~d~ir~l~~~~s---ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~----tfraH~gPVl~v~v~~n~~-~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPS---EPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL----TFRAHEGPVLCVVVPSNGE-HCY 360 (577)
T ss_pred eeecchhhhhhhhcCCC---CCeEEEeccccchhhhhhcccCCccccceeeeE----EEecccCceEEEEecCCce-EEE
Confidence 44556778888899888 446999999999999999432112222222211 1235999999999999999 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+|+-||+|+.|++.........+. .......+.+|.+.|..+++|+....|++++.||+++.|+
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~d----------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYD----------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred eeccCceeeeeccCCCCCcccccC----------------cchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 999999999998864332222221 1344567889999999999999888999999999999998
Q ss_pred CCCCeEEEeeee----------------------------------------------------cCCceEEEEEccCCCE
Q 008939 328 YSKEQLICGGKS----------------------------------------------------YYGALLCCAWSMDGKY 355 (548)
Q Consensus 328 ~~~~~~~~~~~~----------------------------------------------------~~~~v~~l~~spdg~~ 355 (548)
...... +++.. -...+..+.++|...+
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe
Confidence 864433 11100 1123567788899999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+++.+|+.|+++|..++.+++....|...|+++++.| +| -+|++++.|+.+++|.+....++....
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-------ng------~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-------NG------PYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eEecccCCceecccccccccchheeeccceecceeecC-------CC------ceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999999999999999999999999999 88 799999999999999998888776543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-18 Score=173.93 Aligned_cols=236 Identities=15% Similarity=0.192 Sum_probs=178.9
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
+.+..+.+|..+|+|+.|...|.++++++.|..++||.++++.++...++|.+.|+.++.+.+.-.+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44667788999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee--------------ee
Q 008939 370 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP--------------LR 435 (548)
Q Consensus 370 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~--------------~~ 435 (548)
+.++.++..+++|++.|++++|+| +.+.+.||++++||.+-.-.... +.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP-----------------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSP-----------------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCc-----------------cccCCCCCceEeccccccccccCCCCCCcccccceeeee
Confidence 999999999999999999999999 44778899999999882111111 10
Q ss_pred cCCCCCCceecC---CCCcc---------------------ccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 436 RGPLGGSPTFST---GSQSA---------------------HWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 436 ~~~~~~~~~~~~---~~~~~---------------------~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
.... ...|.. ++... ..+..+.+...+-.++.|++-.+..+..+.+|.+.+..|
T Consensus 324 ~~~~--~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 324 FENN--GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred cccc--ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence 0000 001111 11000 011112223334457778888999999999999999999
Q ss_pred EEeC-C--eEEEEECCCeEEEEeCCCCCccc---cCCCCcEE-EecCCCCceEeeecccc
Q 008939 492 IFTQ-E--SVLTVCREGHIKIWMRPGVAESQ---SSSSETVL-STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 492 ~fsp-d--~l~t~s~Dg~I~iW~~~~~~~~~---~~~~~~v~-~~s~d~~~l~s~~~~g~ 544 (548)
.++| + ...+++.||.+.|||+-.+.... .+|...+- +||+||..++.....|-
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence 9999 3 26799999999999976544221 23444444 88888877666654443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=154.92 Aligned_cols=308 Identities=17% Similarity=0.204 Sum_probs=217.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEE-cc-CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISD-LN-SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd-~~-~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.|.-.+++.+++|++++++++..+ .|.||. +. .......+.++||.+.+.+++|+++ |.+|++|+..|.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~---G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD---GAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC---CceEeecccceEEEEEe
Confidence 455568899999999999998877 999997 33 3445678899999999999999999 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+++.. ++.+.. -.++|..+.++||+. +.+....|..|.+....... .......+.....
T Consensus 280 ~~T~~----kqfLPR---------Lgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~------ 338 (792)
T KOG1963|consen 280 LETGK----KQFLPR---------LGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTP------ 338 (792)
T ss_pred ecCCC----cccccc---------cCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchh-hhhhccCccCCCc------
Confidence 98732 222221 378999999999999 88888899999999875421 1111111111000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------cCCceEEEEEccCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS-----------YYGALLCCAWSMDG 353 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~l~~spdg 353 (548)
.. -...++-.+.++++|--+.++..+..|.|.+||+.+.+.+..+.. +.-.++.++.+-.|
T Consensus 339 ~~--------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 339 ST--------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cc--------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 00 001125567788999667788888999999999988766554431 12357778888889
Q ss_pred CEEEEEe--------CC--CeEEEEECCCce----eEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 354 KYILTGG--------ED--DLVQVWSMEDRK----VVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 354 ~~l~sgs--------~d--g~I~vwd~~~~~----~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.+++|.- .| ..+++|-..... +... ...|+..+...+|.+ -- ...++++++.||
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-------~~----rs~~~vta~~dg 479 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-------PT----RSVRCVTASVDG 479 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-------Cc----ccceeEEeccCC
Confidence 9998853 23 357888665432 2222 246988888888765 11 112799999999
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
.+++|-+...+.+..... .| .+...-.-|..+++.++|+.|+
T Consensus 480 ~~KiW~~~~~~n~~k~~s--------------------------------~W-----~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSS--------------------------------NW-----TCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eEEEEEEecccccCcCcc--------------------------------ce-----EEeeeeccccCcccchhhcCCCc
Confidence 999999866543322111 01 0111111278899999999997
Q ss_pred EEEEECCCeEEEEeCCCC
Q 008939 498 VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 498 l~t~s~Dg~I~iW~~~~~ 515 (548)
+++++.|++|.+||..+.
T Consensus 523 lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 523 LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEEEecCCEEEEecCCCh
Confidence 999999999999998773
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-15 Score=145.76 Aligned_cols=227 Identities=15% Similarity=0.183 Sum_probs=147.6
Q ss_pred CCeEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccc-eeeeeeeccCC
Q 008939 150 GDAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKK-LVGAHHYNKDG 226 (548)
Q Consensus 150 ~d~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~-~~~~~~~~~~~ 226 (548)
++.|++||+.+ +....+..+. ....+..++++|+ ++.|+++. .++.|.+|+++.. ++. ......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd---~~~lyv~~~~~~~i~~~~~~~~----g~l~~~~~~~----- 77 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD---KRHLYVGVRPEFRVLSYRIADD----GALTFAAESP----- 77 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC---CCEEEEEECCCCcEEEEEECCC----CceEEeeeec-----
Confidence 34999999964 2223455554 3467889999998 77777764 5788999998631 111 111111
Q ss_pred cccCcceEEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.......+.|+|+++ +|+++ ..++.|.+|+++.++..... +.... +...+.++
T Consensus 78 --~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~----------------------~~~~~-~~~~~~~~ 131 (330)
T PRK11028 78 --LPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAP----------------------IQIIE-GLEGCHSA 131 (330)
T ss_pred --CCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCc----------------------eeecc-CCCcccEe
Confidence 123467899999999 55554 45899999999754322111 11111 11346778
Q ss_pred EECCCCCEEEEEE-CCCeEEEEeCCCCeEEEe-----ee-ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCC--c--
Q 008939 306 AFSTDGTYLATVG-RDGYLRVFDYSKEQLICG-----GK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMED--R-- 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~-----~~-~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~--~-- 373 (548)
+|+|++++++++. .++.|.+||+.+...+.. .. ........++|+|+|+++++..+ ++.|.+||++. +
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 9999999886655 569999999976332211 11 11234678999999999988876 89999999973 2
Q ss_pred eeEEeccC------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCCC
Q 008939 374 KVVAWGEG------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMD 428 (548)
Q Consensus 374 ~~~~~~~~------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~ 428 (548)
+.+..+.. +..+...+.|+| || ++|+++. .++.|.+|++...
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~p-------dg------~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITP-------DG------RHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECC-------CC------CEEEEecCCCCeEEEEEEeCC
Confidence 23333322 122445688999 88 5666654 5789999998654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=133.44 Aligned_cols=242 Identities=16% Similarity=0.167 Sum_probs=177.8
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCC--------CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQ--------DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~--------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
|..-+++|.+++++.+..+ .|.|..+++- .+.++-..+.|...+..++|..+ .|++| .||.|+-|
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~-gdG~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSG-GDGLVYGW 86 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeec-cCceEEEe
Confidence 4456788999999988776 8888887652 13556666779999999999844 44444 55999999
Q ss_pred Eeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
..+..... ..+++.........+......|++|...|..+ -++.++.|+.++-||++++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G------------------- 146 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDG------------------- 146 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCC-------------------
Confidence 87753321 12222222211122233567899999999887 5666669999999999972
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC----------CceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY----------GALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----------~~v~~l~~spd 352 (548)
...+.+++|++-|.++.--.....+++|+.||++|+||+++++.+..+..+. .+|-+++-+
T Consensus 147 -------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-- 217 (325)
T KOG0649|consen 147 -------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-- 217 (325)
T ss_pred -------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--
Confidence 4467889999999999986555679999999999999999999887765432 245566554
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
..+|++|+ ...+.+|+++..++...+. -...|..+.|.. ..++++++..+|.-|.+.
T Consensus 218 edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~---------------d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 EDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVD---------------DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeec---------------ceEEEeccccceeeeeec
Confidence 45777664 5689999999998888776 567788899964 368899988999999875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=159.45 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=180.3
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|.+.|+.+.|.|-.. .|++++.||.|.+|++.+... .......|+..|++|.++|.|+++
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~------------------s~~~~~epi~tfraH~gPVl~v~v 352 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKK------------------SAEKDVEPILTFRAHEGPVLCVVV 352 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCC------------------ccccceeeeEEEecccCceEEEEe
Confidence 3788999999999988 999999999999999954100 012235789999999999999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCC----------eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKE----------QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~----------~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.++++++++|+.||+|+.|++-.. .+...+.+|.+.++.+++|+....|++++.||++++|+.....+ .
T Consensus 353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C 431 (577)
T ss_pred cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-c
Confidence 999999999999999999965311 23456789999999999999999999999999999999876655 3
Q ss_pred eccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--------CCCCceecC
Q 008939 378 WGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--------LGGSPTFST 447 (548)
Q Consensus 378 ~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~ 447 (548)
++.... +.-..+.|-.. +- ..+++...-+.--+.|+.....+..+.... .++.++..+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss------~~------a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSS------RP------AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred ccCCccccCCcceEeeccc------hh------HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 333221 22334555320 00 122332233333444455444444443321 111111111
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.. ........+..++++|..+..++.....|...++++++.|++ |++++.|+.+++|.+....
T Consensus 500 ~~------~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 500 TA------DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred CC------CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 11 222445557789999999999999999999999999999985 9999999999999986544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=144.89 Aligned_cols=250 Identities=13% Similarity=0.143 Sum_probs=159.9
Q ss_pred CCceeEEeCCCCCEEEEecC--CeEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNVG--DAIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~ 206 (548)
+.+..++++|++++|.++.. +.|.+|+++. +....+.... ....+..++|+|+ ++.|+++.. ++.|.+|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~---g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ---GRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC---CCEEEEEEcCCCeEEEEEEC
Confidence 34557899999998877543 3899999973 2212233333 3346789999998 777777664 7889999986
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ........... +...+.+++++|+++.++++...++.|.+||++..+.........
T Consensus 111 ~~--g~~~~~~~~~~-------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~------------- 168 (330)
T PRK11028 111 KD--GIPVAPIQIIE-------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE------------- 168 (330)
T ss_pred CC--CCCCCceeecc-------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc-------------
Confidence 41 10011111110 234467889999998455666677999999997633221100000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCC--Ce--EEEeeeec------CCceEEEEEccCCCE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSK--EQ--LICGGKSY------YGALLCCAWSMDGKY 355 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~--~~--~~~~~~~~------~~~v~~l~~spdg~~ 355 (548)
+. .. .......++|+|++++|+++.. ++.|.+|++.. ++ .+..+..+ ......+.++|++++
T Consensus 169 -----~~-~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 169 -----VT-TV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred -----ee-cC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 00 00 0134567999999999988876 89999999973 33 23333221 122346889999999
Q ss_pred EEEEeC-CCeEEEEECCCceeEEeccCC---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECC
Q 008939 356 ILTGGE-DDLVQVWSMEDRKVVAWGEGH---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~-dg~I~vwd~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~ 426 (548)
|+++.. ++.|.+|+++.......+.++ ......+.|+| || ++|+++. .++.|.+|++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-------dg------~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-------SG------KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-------CC------CEEEEEEccCCcEEEEEEc
Confidence 998854 789999999654321122212 13456789999 98 5565555 48999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-15 Score=157.26 Aligned_cols=344 Identities=13% Similarity=0.122 Sum_probs=204.8
Q ss_pred CCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC-----CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 128 SSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK-----DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~-----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
-|...+..++.++.. .+++++++| +|+||++..-.. +...+.......+.++.+.+. ++.+++++.||.|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---GDQFAVSTKDGSV 1122 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC---CCeEEEEcCCCeE
Confidence 456667777776655 899999988 999999875322 222233334678899999888 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.+.+++.. ..++........++......-|..-+|...... .++.+..-+.|..||+++..... ..
T Consensus 1123 ~~~~id~~---~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~l--------- 1189 (1431)
T KOG1240|consen 1123 RVLRIDHY---NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RL--------- 1189 (1431)
T ss_pred EEEEcccc---ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hh---------
Confidence 99998862 122222222222222212223344455444333 77888888999999998732211 00
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCC---CE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDG---KY 355 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg---~~ 355 (548)
......|.|++++.+|.+++++.|+..|.+.+||++-+.++.... .+..++..+..+|-. ..
T Consensus 1190 --------------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1190 --------------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred --------------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence 011123899999999999999999999999999999888876643 234567777666633 34
Q ss_pred EEE-Ee-CCCeEEEEECCCceeEEeccCCCCCeEEEEE-ecCC---CCC--------CCCCCccceeEEEEEEeCCCeEE
Q 008939 356 ILT-GG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF-DSYW---SQP--------NSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 356 l~s-gs-~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~-~p~~---~~~--------~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.++ ++ ..+.|.+|++.++.+...+..-+ .+..+.+ .|.- +++ ..+++ ..+.+++.|..|+
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-----~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCEKN-----GFLLTGGSDMKIR 1329 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCC-CCcchhhhcccccCCCCCcccceeeecccCC-----ceeeecCCcccee
Confidence 444 44 57899999999987665554221 1111111 1100 000 00111 3789999999999
Q ss_pred EEECCCCeEEeeeecCCCCC---------CceecCCCCccccCCee----eecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 422 LWDLEMDEIVVPLRRGPLGG---------SPTFSTGSQSAHWDNVC----PVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~~~----~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
.||....+... +....+.. .....+++. .-+..+ .++.. ...+--......+...-..|.++|
T Consensus 1330 ~wD~~~p~~ss-~~~~~~s~~~~~~~~s~~~~~i~~~~--~i~e~i~~~~tv~~t-~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1330 KWDPTRPEISS-YAVPGPSTSYSTNSESYDLSTIPGSQ--FIDEFIIYQQTVGLT-EALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred eccCCCccccc-ccccCccccccccchhccccccCCCc--cchhhhhhhhhcCch-hhcccccccccCCCCCcccccchh
Confidence 99998766542 11111100 011111110 001000 00000 000001111111222223688999
Q ss_pred eEEEEeCC---eEEEEECCCeEEEEe
Q 008939 489 SGLIFTQE---SVLTVCREGHIKIWM 511 (548)
Q Consensus 489 ~~l~fspd---~l~t~s~Dg~I~iW~ 511 (548)
++|++... .|++++.||.|+||.
T Consensus 1406 tdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhccCccEEEEecCCCeeeecC
Confidence 99998763 499999999999994
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-17 Score=155.12 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=203.4
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..-.+..+.|..+ |..|+.|+..|.|..+|..+ +.+...+. ....|.++.|..+.+ +||++
T Consensus 126 ~l~eFGPY~~~ytrn---GrhlllgGrKGHlAa~Dw~t------~~L~~Ei~-------v~Etv~Dv~~LHneq-~~AVA 188 (545)
T KOG1272|consen 126 SLPEFGPYHLDYTRN---GRHLLLGGRKGHLAAFDWVT------KKLHFEIN-------VMETVRDVTFLHNEQ-FFAVA 188 (545)
T ss_pred cccccCCeeeeecCC---ccEEEecCCccceeeeeccc------ceeeeeee-------hhhhhhhhhhhcchH-HHHhh
Confidence 334456788888888 88999999999999999887 44444444 467899999998887 66666
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
- ...++|||-.- ..+++++.| ..|..+.|-|..=+|++++..|.++--|+.
T Consensus 189 Q-K~y~yvYD~~G---------------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNG---------------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVS 239 (545)
T ss_pred h-hceEEEecCCC---------------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeec
Confidence 4 57899998542 224444444 678899999988889999999999999999
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
+|+++..+..-.+.+..++-+|-+-.+-+|..+|+|.+|+....+++..+..|.++|.+|++++ +| +
T Consensus 240 ~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-------~G------~ 306 (545)
T KOG1272|consen 240 TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-------GG------R 306 (545)
T ss_pred hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-------CC------c
Confidence 9999999988888999999999998999999999999999999999999999999999999999 99 8
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC-ccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ-SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
+++|.|.|..++|||+++-..+.++....+...+.++..+. ...+...+.+|....... -....|.+.+.. ..+|
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s---~~~~~pYm~H~~-~~~V 382 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGS---GHGETPYMNHRC-GGPV 382 (545)
T ss_pred EEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCC---CCCCcchhhhcc-Cccc
Confidence 99999999999999999998888887766777777777664 223333332222110000 011123332222 3489
Q ss_pred eEEEEeC
Q 008939 489 SGLIFTQ 495 (548)
Q Consensus 489 ~~l~fsp 495 (548)
..+.|.|
T Consensus 383 ~~l~FcP 389 (545)
T KOG1272|consen 383 EDLRFCP 389 (545)
T ss_pred ccceecc
Confidence 9999999
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.9e-16 Score=143.61 Aligned_cols=231 Identities=13% Similarity=0.195 Sum_probs=168.7
Q ss_pred eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
...|.-+.... .+..-.+..|...+..++|+|. +.+.|++|+.|..|.||++... .....+. .......+|
T Consensus 58 af~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~--~l~~~lt---epvv~L~gH 130 (472)
T KOG0303|consen 58 AFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPEN--GLTRDLT---EPVVELYGH 130 (472)
T ss_pred ceeecccccccccCCCCCCccCccccccccccCcc--CCceeecCCCCceEEEEECCCc--ccccCcc---cceEEEeec
Confidence 55555544311 1234455678899999999998 4678999999999999998763 1111111 111222359
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..+|--++|+|...++|++++.|..|.+|++.++. .+..+. |..-|.++.|+.
T Consensus 131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------------------------ali~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------------------------ALITLD-HPDMVYSMSFNR 183 (472)
T ss_pred ceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------------------------eeeecC-CCCeEEEEEecc
Confidence 99999999999999999999999999999999842 233344 779999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC-ceEEEEEccCCCEEEEEe---CCCeEEEEECCCce---eEEeccCC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-ALLCCAWSMDGKYILTGG---EDDLVQVWSMEDRK---VVAWGEGH 382 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~sgs---~dg~I~vwd~~~~~---~~~~~~~h 382 (548)
||.+|++.+.|..|||||.++++++....+|.+ .-..+.|-.+|.++-+|- .+..+-+||..+-+ ....+. .
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-t 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-T 262 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-c
Confidence 999999999999999999999999988888876 344566888998555553 47889999876643 233343 3
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.+.|.---|+| |.. -..+.|-.|+.|+.|.+....
T Consensus 263 SnGvl~PFyD~-------dt~-----ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 263 SNGVLLPFYDP-------DTS-----IVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CCceEEeeecC-------CCC-----EEEEEecCCcceEEEEecCCC
Confidence 44555555666 541 234455569999999998766
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=135.76 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=126.5
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
.+.|+|+|+++++...-.+.|.|.++-+ .+ .+-..-+.+..+.|..+. -..|.+...++.|.+|++.+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq--~~-qlf~cldki~yieW~ads--~~ilC~~yk~~~vqvwsl~Qpe----- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQ--LH-QLFLCLDKIVYIEWKADS--CHILCVAYKDPKVQVWSLVQPE----- 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhh--HH-HHHHHHHHhhheeeeccc--eeeeeeeeccceEEEEEeecce-----
Confidence 5899999999999887799999988632 22 222223466677777662 3355666778899999998732
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc--------cceeeeecCCC
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--------QTQFSVAHPRY 286 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 286 (548)
....+. .....+..++|+|+|+++|.+...|-.|.||.+.+........+.... ..-..+.....
T Consensus 83 -w~ckId------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 83 -WYCKID------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred -eEEEec------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 111111 146789999999999879999999999999999874322222211110 00000000000
Q ss_pred ----------CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 287 ----------SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 287 ----------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
..-..++.++..+-..+.+.|+|||+.|+ |||.--.-.+..+. ..-.+..++|+|.+++|
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceE
Confidence 00001111222234455566666655444 44432111121221 12358889999999999
Q ss_pred EEEeCCCeEEEEECC
Q 008939 357 LTGGEDDLVQVWSME 371 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~ 371 (548)
++|+.|+.++|.+--
T Consensus 226 avGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHF 240 (447)
T ss_pred Eeeccchhhhhhcee
Confidence 999999999986543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=152.37 Aligned_cols=194 Identities=22% Similarity=0.334 Sum_probs=150.4
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
.+..|.|-||+++.. ++..-..+ .+..+...|+++.|.|.+...|++++.||.|++|.+..++.....
T Consensus 599 ~g~gG~iai~el~~P----GrLPDgv~----p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~---- 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEP----GRLPDGVM----PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE---- 666 (1012)
T ss_pred cCCCceEEEEEcCCC----CCCCcccc----cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc----
Confidence 355689999999863 22211111 111267889999999988879999999999999999876543332
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
..|-..+.+|...|+.+.|+| ....|++++.|-+|++||+.+++....+.+|.+.|..++||||
T Consensus 667 ---------------~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 667 ---------------MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred ---------------CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 356678889999999999999 5678999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCce-eEEeccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeEEEEECC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRK-VVAWGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRLLLWDLE 426 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i~lwd~~ 426 (548)
|+.+++.+.||.|++|+-+.++ ++..-.+..+ .--.|.|.- || ++++..+.| .+|.+||..
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-------dg------r~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-------DG------RIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-------cC------cEEEEecccccchhhhhhhhhh
Confidence 9999999999999999998764 4444433221 223466665 77 566666655 468888876
Q ss_pred C
Q 008939 427 M 427 (548)
Q Consensus 427 ~ 427 (548)
+
T Consensus 799 ~ 799 (1012)
T KOG1445|consen 799 T 799 (1012)
T ss_pred h
Confidence 5
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-16 Score=148.34 Aligned_cols=202 Identities=16% Similarity=0.262 Sum_probs=146.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|+.++.||.+.+.+..- + .-.....|.+.+.+-.|+|||.-|++++.||.|+
T Consensus 77 ~~~i~s~DGkf~il~k~~--r-------------------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iK 129 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA--R-------------------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIK 129 (737)
T ss_pred eEEEEcCCceEEEecccc--h-------------------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEE
Confidence 799999999999887542 1 1233456779999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+|.- +|-+..++.....+|.|++|.|+.+.++-+ ..+.+.|=.+.....+..+++|++-|.++.|+| ..
T Consensus 130 iWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-------~s-- 198 (737)
T KOG1524|consen 130 IWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-------QS-- 198 (737)
T ss_pred EEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCc-------cc--
Confidence 9974 465555555567789999999998876665 345677777776666778889999999999998 55
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
.+|+++|+|-..++||-.... +..-..|
T Consensus 199 ----~lI~sgGED~kfKvWD~~G~~------------------------------------------------Lf~S~~~ 226 (737)
T KOG1524|consen 199 ----NIIASGGEDFRFKIWDAQGAN------------------------------------------------LFTSAAE 226 (737)
T ss_pred ----cceeecCCceeEEeecccCcc------------------------------------------------cccCChh
Confidence 699999999999999965322 2222356
Q ss_pred CCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 485 TEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 485 ~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
..+|++++|.||.+...+.-.++|+ ..+....++ ++|+||..++.|+..|-+
T Consensus 227 ey~ITSva~npd~~~~v~S~nt~R~---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDYLLWSYNTARF---------SSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ccceeeeeeccccceeeeeeeeeee---------cCCCccceEEEEEcCCCceeeccccCceE
Confidence 7777777777775433333334441 112233444 667777777776666543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=145.23 Aligned_cols=220 Identities=17% Similarity=0.271 Sum_probs=157.0
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCc-eEEEecCC----CCCCceEEEEEcCCcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNP-VCHAFDQD----AKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~-~~~~~~p~----~~~~~~l~~g~~dg~I~iw 203 (548)
|.+.+.++.|......+.++.++.+.+|.-.... .+..+...++.+ +.+-.-+- ++....++++++||.+.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~--s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD--SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccch--hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4566678888888877777777766665533322 222222222222 11111111 1234689999999999988
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+-.. ++ .+....|.+.+.+-.|+|+|. -|+++++||.|++|.-.- -.+..+
T Consensus 91 ~k~~-------rV------E~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsG--MLRStl------------- 141 (737)
T KOG1524|consen 91 NKSA-------RV------ERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSG--MLRSTV------------- 141 (737)
T ss_pred cccc-------hh------hhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccc--hHHHHH-------------
Confidence 7443 11 111224899999999999999 799999999999998542 111111
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
-....+|.|++|.|+.+.++.+. .+.+.|=.+.....+...++|.+-|.++.|++..+++++|++|-
T Consensus 142 ------------~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 142 ------------VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred ------------hhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCce
Confidence 11127899999999887776664 45677777776666777899999999999999999999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
..+|||-. |+.+..-..|+.+|++++|.|
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eEEeeccc-CcccccCChhccceeeeeecc
Confidence 99999975 667777778999999999999
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=149.07 Aligned_cols=297 Identities=14% Similarity=0.140 Sum_probs=216.2
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-....|.+.|..+.|+..|+.++++++| .|.+||+..+. ..+.....|..++....|-|... ...|+..+.||+|++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~-d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSG-DRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCC-CcCceeccccCceee
Confidence 3567899999999999999999999999 99999998754 23344455777888888988864 567899999999998
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
=.+.......+ .... .-|.++|..++.-|+....|.+++.|+.+.-+|++.+........
T Consensus 214 s~i~~t~~~e~--t~rl-------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c----------- 273 (559)
T KOG1334|consen 214 SEILETGYVEN--TKRL-------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC----------- 273 (559)
T ss_pred eeeccccceec--ceec-------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee-----------
Confidence 76654211111 1111 128999999999999998999999999999999987432211110
Q ss_pred cCCCCCCCCeeEeeecC---CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE------EEeeee------cCCceEE
Q 008939 283 HPRYSKSNPIARWHICQ---GSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL------ICGGKS------YYGALLC 346 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~---~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~------~~~~~~------~~~~v~~ 346 (548)
-..+. -..+.++..| +..++++++.|-.+++||.+.-.. +..+.. ..-.|+|
T Consensus 274 ------------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 274 ------------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred ------------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 01111 2466788888 445899999999999999864221 122211 2236999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCC--c----------eeEEe-ccCCCC--CeEEEEEe-cCCCCCCCCCCccceeEE
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMED--R----------KVVAW-GEGHNS--WVSGVAFD-SYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~--~----------~~~~~-~~~h~~--~V~~v~~~-p~~~~~~~dg~~~~~~~~ 410 (548)
++|+.++.-|++.-.|-.|+++.-.- + ..+.. ++||.. .|.++-|- | .. .+
T Consensus 342 l~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-------rs------Ey 408 (559)
T KOG1334|consen 342 LVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-------RS------EY 408 (559)
T ss_pred EEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-------cc------ce
Confidence 99998877777777889999994322 2 22333 678864 57788773 3 33 58
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
+++|+.-|.|.|||-.+++.++-++. ...-|+|
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~Meg-----------------------------------------------Dr~VVNC 441 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEG-----------------------------------------------DRHVVNC 441 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhc-----------------------------------------------ccceEec
Confidence 99999999999999999888765554 2237899
Q ss_pred EEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 491 LIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 491 l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
|.-+|.. |++.+-|.-||||...+
T Consensus 442 LEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 442 LEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cCCCCCCchhhccCCccceeeecCCc
Confidence 9999964 99999999999998644
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-15 Score=150.55 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=188.8
Q ss_pred CCCceeEEeCCCCCEEEEec-CC-eEEEEEccCCCCCCeEEE----ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQDKDPIKSI----HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~~~~i~~~----~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...++++.|+|....+++++ .+ .|.+||+..+...+...+ .-|...++.+.|..+..+ ..+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeee
Confidence 56788999999777666644 44 999999998764322222 236778899999988664 779999999999999
Q ss_pred Eeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC-CCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS-KDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~ 281 (548)
+++.........+. ..... .........+++++|.+...+.|++|..+|.|+--+-. .......
T Consensus 321 ~~~~l~~P~e~~~~-~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~------------- 386 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLL-ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV------------- 386 (555)
T ss_pred eccccccchhhccc-ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc-------------
Confidence 88763221111111 11110 01111346789999999999899999999999873322 1111100
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCC-EEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGK-YILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~-~l~s 358 (548)
..+++..+..|.++|+++.++|=+. .+++++ |.+++||... ...++..+..+...|++++|||-.. .+++
T Consensus 387 ------~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 387 ------SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ------cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1233456667889999999999554 455554 9999999987 6667777777888899999999764 6777
Q ss_pred EeCCCeEEEEECCCc--eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 359 GGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 359 gs~dg~I~vwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+..||.|.+||+... .++.....+......+.|++ +| ..|+.|...|.+.+|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-------~g------~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-------NG------KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCC-------CC------cEEEEecCCCcEEEEEcCch
Confidence 888999999999754 45555555566667788887 78 78999999999999999643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-15 Score=143.03 Aligned_cols=151 Identities=16% Similarity=0.309 Sum_probs=113.8
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc---------cccce-eeeeeeccC------CcccCcceEE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD---------VGKKL-VGAHHYNKD------GSVNNSRCTS 235 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~---------~~~~~-~~~~~~~~~------~~~~~~~v~~ 235 (548)
.+..++|+.|-|.. ...++++..+|.+++||.+-.... .+... +........ ..+..+.|+.
T Consensus 218 ~ktsvT~ikWvpg~--~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGS--DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCC--CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccc
Confidence 45799999999984 458899999999999987531100 00000 000000000 1134678999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE
Q 008939 236 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA 315 (548)
Q Consensus 236 l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 315 (548)
++|+||+. +||+.+.||.++|||..+.. .+...+..=+...|++|||||+||+
T Consensus 296 f~FS~DG~-~LA~VSqDGfLRvF~fdt~e--------------------------Llg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 296 FAFSPDGK-YLATVSQDGFLRIFDFDTQE--------------------------LLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred eeEcCCCc-eEEEEecCceEEEeeccHHH--------------------------HHHHHHhhccceEEEEEcCCccEEE
Confidence 99999999 99999999999999998721 1111111227899999999999999
Q ss_pred EEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc
Q 008939 316 TVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM 351 (548)
Q Consensus 316 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp 351 (548)
+|+.|..|.||.+..++++..-++|..+|..++|.|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999984
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=158.10 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=188.2
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..+|-++|+|+.|+..|.+|+++++| .++||..+++. ++..+..|...++.++.+.+ ..++++++.|..|++|-
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs~ditdlavs~~---n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--CLASCRGHSGDITDLAVSSN---NTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh--hhccCCCCccccchhccchh---hhhhhhcccCceEEEEe
Confidence 34899999999999999999999999 99999988854 89999999999999999887 77899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... ..+. .+ ..|.+.|++|+|+|-. +.+.||++++||.+.........+.....
T Consensus 261 l~~~-----~pvs-vL------rghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~-------- 315 (1113)
T KOG0644|consen 261 LPDG-----APVS-VL------RGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTE-------- 315 (1113)
T ss_pred cCCC-----chHH-HH------hccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCccc--------
Confidence 8762 2221 11 1489999999999954 67899999999998321111100000000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC-CEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG-KYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg 363 (548)
...+..+.|...+.-+++++.|+.-+.|.+..... +...+.-+..+.|- .+.+++-.+.
T Consensus 316 --------------~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 316 --------------KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred --------------ccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeee
Confidence 14466777888888999999999999887752211 11111112222222 4567777888
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+++|++-++..++.+.+|...+..+.++|+ |- ....+++.||...|||+-.+..++...
T Consensus 376 ~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf------n~------ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF------NP------RIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EeeeeecccchhhhhhcccccceeeeeecCC------Cc------HhhhhccCCCceEeeecccCCcceeee
Confidence 9999999999999999999999999999994 44 577899999999999999887766544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=147.09 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=194.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+..++|-|+ |..|+.+. +..+++||... +..+.. .+.|++.|+|++|+.+|+ .|++|+.|..
T Consensus 14 ci~d~afkPD---GsqL~lAA-g~rlliyD~nd-----G~llqt-------LKgHKDtVycVAys~dGk-rFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPD---GTQLILAA-GSRLLVYDTSD-----GTLLQP-------LKGHKDTVYCVAYAKDGK-RFASGSADKS 76 (1081)
T ss_pred chheeEECCC---CceEEEec-CCEEEEEeCCC-----cccccc-------cccccceEEEEEEccCCc-eeccCCCcee
Confidence 6788899999 55666654 45799999876 222211 125999999999999999 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|.+|....++... -.|...|.||.|+|-.+.|++++-. ..-+|...... +
T Consensus 77 VI~W~~klEG~Lk----------------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V 126 (1081)
T KOG1538|consen 77 VIIWTSKLEGILK----------------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-V 126 (1081)
T ss_pred EEEecccccceee----------------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-H
Confidence 9999976543211 2366899999999988899998754 46788776433 2
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE---EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV---AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~---~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
...+ ....+.+++|..||++|+.|-.||+|.+-+-. ++.. .+--|.+++|++++|+| ... ......+
T Consensus 127 ~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p-------~sg-~G~~di~ 196 (1081)
T KOG1538|consen 127 SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNP-------SSG-EGRNDIL 196 (1081)
T ss_pred Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecC-------CCC-CCccceE
Confidence 2222 24578999999999999999999999998643 3332 23335789999999998 221 1122478
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
+......++.++.+.....-..-...-...++.+-++| ..+.+|..++.+.++.. .+..+.++......|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG------Ey~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG------EYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTV 269 (1081)
T ss_pred EEEeccceeEEEEecceeecccccCCCCchhheeccCC------cEEEEccCCCceEEEee-cCeEEeeccccceeEEEE
Confidence 88888899999988654332222121222333333333 55677777777777743 344455555567789999
Q ss_pred EEeCCe--EEEEECCCeEEEEeCC
Q 008939 492 IFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 492 ~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+..|+. ++.|+.||+|--+++-
T Consensus 270 ~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 270 QAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEccCCceEEEEEccCeeehhhhH
Confidence 999974 9999999999999853
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=135.18 Aligned_cols=280 Identities=15% Similarity=0.121 Sum_probs=193.4
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCC
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGS 301 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 301 (548)
.++...|.+.|+.|.|+.+++ +|++|+.|-.+++|+++.- .... ..+|+..... |...
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~--~~~k------------------~~KPI~~~~~~H~SN 107 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDEL--MVRK------------------TPKPIGVMEHPHRSN 107 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHH--Hhhc------------------CCCCceeccCccccc
Confidence 344556999999999999988 9999999999999998641 0000 1244544433 4589
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce-eEE-
Q 008939 302 INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK-VVA- 377 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~-~~~- 377 (548)
|.|++|.....+|++|..+++|...|+++.+.+..+.. ..+.|..+..+|-.+.|++.+.++.|.+||.+... .+.
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 99999999889999999999999999999988776542 23589999999999999999999999999998765 221
Q ss_pred -eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee----ecCCC----CCCceecCC
Q 008939 378 -WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL----RRGPL----GGSPTFSTG 448 (548)
Q Consensus 378 -~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~----~~~~~----~~~~~~~~~ 448 (548)
.+.........+.|+| .- ..+|++.+..+-+-+||++..+...-- ...+. -....|++.
T Consensus 188 ~~~AN~~~~F~t~~F~P-------~~-----P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHP-------ET-----PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred eeecCCCccceeeeecC-------CC-----ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 1223456677889998 32 168899999999999999876532110 00011 133455555
Q ss_pred CCccccCCeeeecccCCCCceeecCCCC-ceEEeecC-------CCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc--
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLS-PLVAHRVH-------TEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE-- 517 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~-~~~~~~~h-------~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~-- 517 (548)
+. .+..-.......++|+.... ++..+. | ...+.+++|..|+ +++|+.|=.|.+|.++....
T Consensus 256 G~------Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 256 GN------QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred CC------eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcccc
Confidence 52 11111123345566665533 333332 2 2357888998886 99999999999999876431
Q ss_pred --ccc---------------------CCCCcE--EEecCCCCceEeeecc
Q 008939 518 --SQS---------------------SSSETV--LSTSSKDKPLLSSKVV 542 (548)
Q Consensus 518 --~~~---------------------~~~~~v--~~~s~d~~~l~s~~~~ 542 (548)
.+. +|..-+ +.|+|-..+|+++++.
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchh
Confidence 122 222211 2678888888887765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=147.99 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=143.4
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+|||..... ...+..+...+...+|+|+ +..|+..+.+ .+|++||+++.. ...+..
T Consensus 185 ~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD---G~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~--------- 245 (429)
T PRK01742 185 EVRVADYDGFN---QFIVNRSSQPLMSPAWSPD---GSKLAYVSFENKKSQLVVHDLRSGA----RKVVAS--------- 245 (429)
T ss_pred EEEEECCCCCC---ceEeccCCCccccceEcCC---CCEEEEEEecCCCcEEEEEeCCCCc----eEEEec---------
Confidence 89999987643 3445556678899999999 7778777654 369999987521 111110
Q ss_pred cCcceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.......++|+|+++ .|+. ...+|.+.||.++..+. .+..+..+...+....|
T Consensus 246 ~~g~~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~-------------------------~~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 246 FRGHNGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGG-------------------------TPSQLTSGAGNNTEPSW 299 (429)
T ss_pred CCCccCceeECCCCC-EEEEEEecCCcEEEEEEECCCC-------------------------CeEeeccCCCCcCCEEE
Confidence 122234689999999 5555 45788766665443111 12223334456788999
Q ss_pred CCCCCEEEEEE-CCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 308 STDGTYLATVG-RDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 308 sp~g~~l~s~~-~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
+|||+.|+..+ .++..+||++... .....+ .+.. .++.|+|||++|+..+.++ +.+||+.+++.......+ .
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~ 373 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L 373 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C
Confidence 99999877665 5788888877432 212222 3333 4578999999998887765 556999988654333322 2
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC--CCeEEeee
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE--MDEIVVPL 434 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~--~~~~~~~~ 434 (548)
...+.|+| || .+|+.++.++.+.+|++. .+..++.+
T Consensus 374 ~~~~~~sP-------dG------~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 374 DESPSISP-------NG------IMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCceECC-------CC------CEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 35678999 99 789988889988888763 34444444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=148.61 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=150.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~i 202 (548)
.|...+...+|+|||+.|++.+. + .|++||+.++..+.+..+ +......+|+|+ +..|+.+. .+|.+.|
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~wSPD---G~~La~~~~~~g~~~I 274 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPAFSPD---GSRLAFASSKDGVLNI 274 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCceeECCC---CCEEEEEEecCCcEEE
Confidence 45677889999999999998653 2 799999987542333332 234457899999 77777765 6787655
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++.. ...+.... .+...+....|+|+++.+++++..+|...||+++..+..
T Consensus 275 y~~d~~----~~~~~~lt-------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------------- 327 (429)
T PRK01742 275 YVMGAN----GGTPSQLT-------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------------- 327 (429)
T ss_pred EEEECC----CCCeEeec-------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------------
Confidence 544321 11111111 134567889999999944555667889999987653221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+ .+.+ ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.+
T Consensus 328 ---------~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 328 ---------ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred ---------eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 1111 1222 4578999999999888765 556999888654322222 23567899999999999999
Q ss_pred CeEEEEEC--CCceeEEeccCCCCCeEEEEEec
Q 008939 363 DLVQVWSM--EDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 363 g~I~vwd~--~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.+.+|++ .+++.+..+..|.+.+..++|+|
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 98888876 35778888888988899999988
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=119.71 Aligned_cols=300 Identities=14% Similarity=0.156 Sum_probs=191.9
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEEEEcC------CcEEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLIGLNS------GDVYSV 203 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~g~~d------g~I~iw 203 (548)
....++|+.|...++++.++-.+||+++- .+......+... .+.-+-|..+ -+.++|+.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEE
Confidence 34569999999999999999999999874 122222222222 2222233322 234455443 359999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|=. .++.+.... ...+|.+|.+.++ .|++.- .+.|+||....+-+....+....++
T Consensus 81 DD~------k~~~i~el~-------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NP------- 136 (346)
T KOG2111|consen 81 DDL------KERCIIELS-------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP------- 136 (346)
T ss_pred ecc------cCcEEEEEE-------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCC-------
Confidence 922 233333333 4788999999887 455554 4789999987543332222221111
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEE-EECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccCCCEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST--DGTYLAT-VGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s-~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
... ++.+| +..+||. |-.-|.|+|-|+...+. ...+.+|...|.|++++-+|..+|+
T Consensus 137 ----------------kGl--C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 137 ----------------KGL--CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ----------------Cce--EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE
Confidence 122 33344 3445554 44569999999976554 3678899999999999999999999
Q ss_pred EeCCCe-EEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 359 GGEDDL-VQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 359 gs~dg~-I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++..|+ |||||.++++.+++++. ....|.+|+|+| |+ .+|+..+.-|+|.|+.++....-..
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-------~~------s~LavsSdKgTlHiF~l~~~~~~~~-- 263 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-------NS------SWLAVSSDKGTLHIFSLRDTENTED-- 263 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-------Cc------cEEEEEcCCCeEEEEEeecCCCCcc--
Confidence 999885 79999999999999873 456899999999 88 7999999999999999886442211
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
. ..++.+ +...+ .+..+ ....+..++...++..-++|-.+ .++..+.||.-.-+.+.
T Consensus 264 ~---~SSl~~--------~~~~l--------pky~~--S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 264 E---SSSLSF--------KRLVL--------PKYFS--SEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred c---cccccc--------ccccc--------chhcc--cceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 0 000000 00000 00000 01122333344566777888765 58999999987766654
Q ss_pred CC
Q 008939 514 GV 515 (548)
Q Consensus 514 ~~ 515 (548)
..
T Consensus 323 ~~ 324 (346)
T KOG2111|consen 323 PK 324 (346)
T ss_pred cc
Confidence 43
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-15 Score=139.26 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=151.3
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY 313 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~ 313 (548)
.+++|++++. .|++++.||.+|||+... ..++.....|.+.|.++.|+|||++
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps--------------------------~~t~l~e~~~~~eV~DL~FS~dgk~ 200 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS--------------------------MLTILEEIAHHAEVKDLDFSPDGKF 200 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCc--------------------------chhhhhhHhhcCccccceeCCCCcE
Confidence 7899999998 999999999999999654 2345555677899999999999999
Q ss_pred EEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCC-----CEEEEEeCCCeEEEEECCCcee-----EEeccC
Q 008939 314 LATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDG-----KYILTGGEDDLVQVWSMEDRKV-----VAWGEG 381 (548)
Q Consensus 314 l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg-----~~l~sgs~dg~I~vwd~~~~~~-----~~~~~~ 381 (548)
|++.+.| ..+||+.+++..+.... .....+..|.|+-|+ .+++.-..-+.|+.||+..... ......
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 9999999 89999999996655443 223356778888877 2333344456777777643221 111112
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeec
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g 461 (548)
-...|++++.++ || ++++.|+.||.|.|++..+-++++-++.
T Consensus 280 ~~~siSsl~VS~-------dG------kf~AlGT~dGsVai~~~~~lq~~~~vk~------------------------- 321 (398)
T KOG0771|consen 280 RFKSISSLAVSD-------DG------KFLALGTMDGSVAIYDAKSLQRLQYVKE------------------------- 321 (398)
T ss_pred ccCcceeEEEcC-------CC------cEEEEeccCCcEEEEEeceeeeeEeehh-------------------------
Confidence 345799999999 99 8999999999999999988776654443
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.|...|+.|.|+|| ++++.+.|..+.+..+.-..
T Consensus 322 ---------------------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 322 ---------------------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ---------------------hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 68889999999997 48889999998888876533
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-13 Score=126.44 Aligned_cols=177 Identities=18% Similarity=0.341 Sum_probs=138.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.+++.+++... .|..+.| +..+.+|.++.+ +|++.-.+. |+|||++. .++...+... ..+..
T Consensus 69 ~Lkv~~~Kk~~--~ICe~~f-pt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~------MklLhTI~t~---~~n~~ 130 (391)
T KOG2110|consen 69 KLKVVHFKKKT--TICEIFF-PTSILAVRMNRK-----RLVVCLEES-IYIYDIKD------MKLLHTIETT---PPNPK 130 (391)
T ss_pred eEEEEEcccCc--eEEEEec-CCceEEEEEccc-----eEEEEEccc-EEEEeccc------ceeehhhhcc---CCCcc
Confidence 68999998744 7777776 459999999876 677777664 99999987 2222222111 11455
Q ss_pred ceEEEEEecCCCcEEEE-Ee-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 232 RCTSVTWVPGGDGAFVV-GH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s-~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.+.++.+++.+. +|+- ++ ..|.|+|||+.+ ..++..+..|++.+-+++|++
T Consensus 131 gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~n--------------------------l~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 131 GLCALSPNNANC-YLAYPGSTTSGDVVLFDTIN--------------------------LQPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ceEeeccCCCCc-eEEecCCCCCceEEEEEccc--------------------------ceeeeEEEecCCceeEEEECC
Confidence 566777766666 5555 33 458999999986 467888999999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCCeEEEeeeecC--CceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGY-LRVFDYSKEQLICGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+|.+||+++..|+ ||||.+.+|+.+..++... ..|.+++|+||+++|++.++.++|++|.+++.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999997 7899999999998887533 36889999999999999999999999998754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=136.94 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=144.2
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 256 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~ 256 (548)
.+++|+.+ +..|++|..||.+++|+..+. ..+.... .|...|.++.|+||++ .|++-+.| ..+
T Consensus 148 k~vaf~~~---gs~latgg~dg~lRv~~~Ps~-----~t~l~e~-------~~~~eV~DL~FS~dgk-~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGD---GSKLATGGTDGTLRVWEWPSM-----LTILEEI-------AHHAEVKDLDFSPDGK-FLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCC---CCEeeeccccceEEEEecCcc-----hhhhhhH-------hhcCccccceeCCCCc-EEEEecCC-ceE
Confidence 89999998 889999999999999996652 2222212 2789999999999999 89999998 999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC---CE--EEEEECCCeEEEEeCCCC
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG---TY--LATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~--l~s~~~dg~v~vwd~~~~ 331 (548)
||++++. .......+... ......+.|+.|+ .+ ++....-+.|+.||+...
T Consensus 211 VW~~~~g-~~~a~~t~~~k-----------------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 211 VWSVNTG-AALARKTPFSK-----------------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred EEEeccC-chhhhcCCccc-----------------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 9999974 22222221111 1234456777665 22 222334456777666432
Q ss_pred e------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCc
Q 008939 332 Q------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 332 ~------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
. ....+. ....|.+++.++||++++.|+.||.|.|++..+.+.++..+ .|...|+.|.|+| |.
T Consensus 267 ~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-------ds-- 336 (398)
T KOG0771|consen 267 SGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-------DS-- 336 (398)
T ss_pred ccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-------Cc--
Confidence 1 111122 23469999999999999999999999999999988776664 7999999999999 88
Q ss_pred cceeEEEEEEeCCCeEEEEECCCC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++++.+.|..+.+..+.-.
T Consensus 337 ----r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 337 ----RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ----CcccccccCCceeEEEEeec
Confidence 68888999988888877653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=143.75 Aligned_cols=236 Identities=15% Similarity=0.146 Sum_probs=163.6
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.|..++.|...+..++.++.. +.++++|+.||+|++|+++....+. ........+.. ...++.++...+.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~--~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~----~~sr~~~vt~~~~~~- 1111 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEH--TSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSP----EGSRVEKVTMCGNGD- 1111 (1431)
T ss_pred EeehhhhccccccceeecCCC--CceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEec----cCCceEEEEeccCCC-
Confidence 466666677778888887773 5799999999999999998633221 11122222222 467899999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeE-EEEECC-CCC-EEEEEECC
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSIN-SIAFST-DGT-YLATVGRD 320 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~sp-~g~-~l~s~~~d 320 (548)
.+|+++.||.|++.+++............ +....+ .+.+. .-+|.. .+. .|+.+...
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~-------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQV-------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeee-------------------ecccccCCCceEEeecccccccceeEEEEEec
Confidence 89999999999999998621111111000 000000 12333 333443 333 78888889
Q ss_pred CeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCC
Q 008939 321 GYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~ 397 (548)
+.|..||+++......++ ...+.|++++.+|.+.++++|...|.+.+||++-+.++..++ ++..+++.|..+|....
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence 999999998776554433 234789999999999999999999999999999998887776 46688999988873111
Q ss_pred CCCCCCccceeEEEEEEe-CCCeEEEEECCCCeEEeeeec
Q 008939 398 PNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+. ..+.++. ..+.|.+|++.+|.+...+-.
T Consensus 1253 ---~S------~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1253 ---ES------VSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ---Cc------eEEEecccCCCceeeeecccCcceEEEEc
Confidence 11 3344444 578899999999987766654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=142.61 Aligned_cols=278 Identities=18% Similarity=0.225 Sum_probs=180.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg 253 (548)
.+..+.|+|- ...++++...-.|.+||.+. ++.+.. |. .+......|+.+.+-.+.+ .++++|+.||
T Consensus 1066 ~pk~~~~hpf---~p~i~~ad~r~~i~vwd~e~-----~~~l~~---F~-n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPF---EPQIAAADDRERIRVWDWEK-----GRLLNG---FD-NGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCceeeecCC---CceeEEcCCcceEEEEeccc-----Cceecc---cc-CCCCCCCccceeeeecccchhheeeeccCc
Confidence 4677888887 45688888778899999876 232211 11 1223567899998865433 3899999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-------CCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-------QGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
.|+||+--...-. +.+.+..|..- .+.=.-++|-.+..+|++++.-..|+||
T Consensus 1134 vIRIwk~y~~~~~---------------------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIW 1192 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWK---------------------KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIW 1192 (1387)
T ss_pred eEEEecccccccC---------------------CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEE
Confidence 9999985432100 01111112110 1111346777755566666668899999
Q ss_pred eCCCCeEEEeeeec-CCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCc---eeEEeccCCCCC--eEEEEEecCCCCCC
Q 008939 327 DYSKEQLICGGKSY-YGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDR---KVVAWGEGHNSW--VSGVAFDSYWSQPN 399 (548)
Q Consensus 327 d~~~~~~~~~~~~~-~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h~~~--V~~v~~~p~~~~~~ 399 (548)
|....+++..+... ...++++.-+ +.|+.+++|..||.|++||.+.. ..+...+.|+.+ |..+.+.+
T Consensus 1193 Da~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~------ 1266 (1387)
T KOG1517|consen 1193 DAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR------ 1266 (1387)
T ss_pred ecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec------
Confidence 99988877765533 2345555432 34689999999999999999864 356777889888 99999987
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
.|- ..|++++.||.|++||+++......+.. ... |
T Consensus 1267 -~G~-----~elvSgs~~G~I~~~DlR~~~~e~~~~i--------------v~~----------------~--------- 1301 (1387)
T KOG1517|consen 1267 -QGL-----GELVSGSQDGDIQLLDLRMSSKETFLTI--------------VAH----------------W--------- 1301 (1387)
T ss_pred -CCC-----cceeeeccCCeEEEEecccCccccccee--------------eec----------------c---------
Confidence 662 2599999999999999998522211110 000 0
Q ss_pred EeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccCCC--------C--cEEEecCCCCceEeee
Q 008939 480 AHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSS--------E--TVLSTSSKDKPLLSSK 540 (548)
Q Consensus 480 ~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~~~--------~--~v~~~s~d~~~l~s~~ 540 (548)
.-...+++|..+++ .|++|+. +.|+||++.+......... . .-++|.|-.-.||.|.
T Consensus 1302 ---~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1302 ---EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ---ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 01224888888886 4778877 9999999988764333111 1 2225666655566663
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=129.25 Aligned_cols=269 Identities=12% Similarity=0.123 Sum_probs=186.3
Q ss_pred CceeEEeCCCCC--EEEEe-cCCeEEEEEccCCCC----CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 132 SMTNTNFDGKGT--YIIFN-VGDAIFISDLNSQDK----DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 132 ~v~~~~~~~~g~--~l~~~-~~d~v~vwd~~~~~~----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+..+.|..+++ .+... .++.+...++..... ..+..+.+....+..++.. ...|++|..+|.+.+|.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-----dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-----DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-----CCEEEEEecCCcEEEEe
Confidence 444556654444 34444 344676666665321 1222444445555555554 33789999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--CcEEEEEcCCCCCCCCCccccc-ccceeee
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--GNLYVYEKSKDGAGDSSFPVIK-DQTQFSV 281 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~-~~~~~~~ 281 (548)
.+.......+.+. .. ....+..|.-++..++++++|+.. ..+.+||+... ...+.-.-.+ +.-...
T Consensus 132 ~k~~d~hss~l~~-la--------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~Lr- 200 (412)
T KOG3881|consen 132 DKSGDLHSSKLIK-LA--------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLR- 200 (412)
T ss_pred ccCCcccccccee-ee--------cCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccce-
Confidence 8752211111111 10 245677888888888788889988 89999999864 2111111010 000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
+- -.++++.|-+. ...|++++.-+.||+||.+.++ ++..+.-...++.++...|+++++++
T Consensus 201 ----------VP------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 201 ----------VP------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred ----------ee------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE
Confidence 00 34677888886 7889999999999999998764 57777777889999999999999999
Q ss_pred EeCCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 359 GGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
|..-+.+..+|++.++.... +.+-.+.|++|..+| .+ .++++||.|..|+|+|+.+.+++..+...
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-------~~------~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-------TH------PVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcC-------CC------ceEEeeccceeEEEeecccchhhhhhhhh
Confidence 99999999999999988766 889999999999999 76 79999999999999999997776555443
Q ss_pred CCCCCcee
Q 008939 438 PLGGSPTF 445 (548)
Q Consensus 438 ~~~~~~~~ 445 (548)
...+.+.+
T Consensus 332 s~lt~il~ 339 (412)
T KOG3881|consen 332 SRLTFILL 339 (412)
T ss_pred ccccEEEe
Confidence 44444444
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=129.90 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=172.5
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--CcEEEEEe
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS--GDVYSVSL 205 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d--g~I~iwdl 205 (548)
..+|-.+.. .+|.++.+-....+++|..+.+. ..++..+..+ ..+..+.-.+.. ...+++|+.. ..+.+||+
T Consensus 105 ~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~--p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 105 TKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTD--PYIVATGGKENINELKIWDL 180 (412)
T ss_pred cccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCC--CceEecCchhcccceeeeec
Confidence 344444443 35556655555599999998644 3455555544 345555555553 3466779998 88999999
Q ss_pred eecccccccceeeeeeeccCCcc--cCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSV--NNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++ .+++.......++... ..-.++++.|.+. .. .|+++..-+.|++||.+.+
T Consensus 181 e~-----~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~q------------------ 236 (412)
T KOG3881|consen 181 EQ-----SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQ------------------ 236 (412)
T ss_pred cc-----ceeeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCccc------------------
Confidence 87 3555544444443322 3456778999887 44 8999999999999999863
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
+.|+..+..-+.+|+++...|++++++++..-+.+..||++.+++... +++..+.|.++..+|.+++|++++
T Consensus 237 -------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 237 -------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred -------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence 567777777789999999999999999999999999999999998766 888999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
-|+.|||+|+++.++++... -...+++|.+.+
T Consensus 310 LDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999977765543 345567777765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-13 Score=121.88 Aligned_cols=158 Identities=18% Similarity=0.403 Sum_probs=115.6
Q ss_pred EEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeE
Q 008939 234 TSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSIN 303 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 303 (548)
..+.|+|.|..+++.... -|...+|.++..+ .++..+... .++|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-------------------------~~~~~i~l~~~~~I~ 63 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-------------------------IPVESIELKKEGPIH 63 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-------------------------CccceeeccCCCceE
Confidence 578899999855555541 1345566654322 233333332 35799
Q ss_pred EEEECCCCCEEEEE--ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEe
Q 008939 304 SIAFSTDGTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAW 378 (548)
Q Consensus 304 ~~~~sp~g~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~ 378 (548)
+++|+|+++.|++. ..+..|.+||++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||+++.+.+..
T Consensus 64 ~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~ 140 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST 140 (194)
T ss_pred EEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec
Confidence 99999999987655 357799999997 66666654 4678899999999999998754 6799999999988887
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd~~~~~~~~~~~ 435 (548)
.+ |. .++.++|+| || ++|+++.. |..++||++. |+++....
T Consensus 141 ~~-~~-~~t~~~WsP-------dG------r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 141 FE-HS-DATDVEWSP-------DG------RYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred cc-cC-cEEEEEEcC-------CC------CEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 76 44 478999999 99 67777763 8899999985 66655443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=120.33 Aligned_cols=247 Identities=17% Similarity=0.280 Sum_probs=168.0
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEcc-CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLN-SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~-~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
|...+.....-|...-++..+.| +++||--. .++ .--.-..+.+..++++.|.++ ...|++|..+|.+.-+.+.
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc-cCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEEhh
Confidence 33444444455556667777777 99999744 332 112223457889999999998 7789999999999998876
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ..+ ..+.+....|..++..+-|+-..+ .+++.+.|..+. |.-...+...-.+-..
T Consensus 99 ed---fnk-----m~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~------------- 155 (404)
T KOG1409|consen 99 ED---FNK-----MTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFA-WHCTESGNRLGGYNFE------------- 155 (404)
T ss_pred hh---hhh-----cchhhhhhhhhcceeeEEecCCce-eEEEeccccceE-EEeeccCCcccceEee-------------
Confidence 52 122 123344456899999999998887 788888876654 4433222211111000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
...+++.|.-. +...|...|.|.+..+. .-.++.++.+|.+.+.++.|.|....|++|..|..
T Consensus 156 -------------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 156 -------------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred -------------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 01111111111 44445555555554443 34567889999999999999999999999999999
Q ss_pred EEEEECCCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 365 VQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 365 I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
|.+||+--++ ....+.+|...|..+.+.+ -- +.+.+++.||.|.+||++....
T Consensus 221 vi~wdigg~~g~~~el~gh~~kV~~l~~~~-------~t------~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQGHNDKVQALSYAQ-------HT------RQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eEEEeccCCcceeeeeccchhhhhhhhhhh-------hh------eeeeeccCCCeEEEEeccceee
Confidence 9999997544 4567789999999998865 33 7899999999999999976543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=120.05 Aligned_cols=206 Identities=16% Similarity=0.228 Sum_probs=141.4
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+....+..++|++- -..++++..|..|++||-........+. .....|+|++|-|.+...|++|+
T Consensus 96 ws~~dlr~~aWhqH---~~~fava~nddvVriy~ksst~pt~Lks------------~sQrnvtclawRPlsaselavgC 160 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQH---IIAFAVATNDDVVRIYDKSSTCPTKLKS------------VSQRNVTCLAWRPLSASELAVGC 160 (445)
T ss_pred hhhcceeeEeechh---hhhhhhhccCcEEEEeccCCCCCceecc------------hhhcceeEEEeccCCcceeeeee
Confidence 34456667777775 4568999999999999866421111110 14678999999999887888888
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS 329 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~ 329 (548)
.. -|.+|..+............. .....+..-.+| ..|++|.|.+||..+++++ .|..|.|||..
T Consensus 161 r~-gIciW~~s~tln~~r~~~~~s------------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 161 RA-GICIWSDSRTLNANRNIRMMS------------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred cc-eeEEEEcCccccccccccccc------------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC
Confidence 85 488998865332221111000 001112222334 7899999999999999887 46789999999
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-eeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++..+.......+.+.-+.||||+.+|+++.-|+..++|+.... ....... -.+.|...+|+| +|.
T Consensus 227 tg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWsp-------cGs----- 293 (445)
T KOG2139|consen 227 TGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSP-------CGS----- 293 (445)
T ss_pred CCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecC-------CCC-----
Confidence 98876554444577889999999999999999999999966543 3333333 344899999999 882
Q ss_pred EEEEEEeCCC
Q 008939 409 YRFGSVGQDT 418 (548)
Q Consensus 409 ~~l~s~~~Dg 418 (548)
.+|.+++..-
T Consensus 294 fLLf~~sgsp 303 (445)
T KOG2139|consen 294 FLLFACSGSP 303 (445)
T ss_pred EEEEEEcCCc
Confidence 4455555433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=132.61 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=142.3
Q ss_pred CCCCceeEEeCCCCCEEEEec---CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcCC--cEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV---GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSG--DVY 201 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~---~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg--~I~ 201 (548)
+...+...+|+|||+.|++.. ++ .+++|++.++..+.+ ...+......+|+|+ +..|+.. ..+| +|+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~SPD---G~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFSPD---GSKLAFALSKTGSLNLY 270 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEECCC---CCEEEEEEcCCCCcEEE
Confidence 455778999999999998743 33 899999987542223 223344557899999 6667654 4455 488
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||+.+. .+..... +...+....|+|+++.++++...++...||.++..+..
T Consensus 271 ~~d~~tg------~~~~lt~-------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--------------- 322 (429)
T PRK03629 271 VMDLASG------QIRQVTD-------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--------------- 322 (429)
T ss_pred EEECCCC------CEEEccC-------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---------------
Confidence 8998752 1111111 23456789999999943344444555566644322111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
...+..+........|+|||++|+....+ ..|.+||+.+++... +... .......|+|||+.|+.
T Consensus 323 ----------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 ----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred ----------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEE
Confidence 11111222345678899999999887654 358899998876442 2221 22346789999999999
Q ss_pred EeCCCe---EEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 359 GGEDDL---VQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 359 gs~dg~---I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.+.++. +.+++++ ++....+.+|.+.+...+|+|
T Consensus 391 ~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 887764 6777774 556667778888899899987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-12 Score=129.33 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=139.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++||.... ..+.+..+...+...+|+|+ +..|+..+.+ .+|++||+... +. .....
T Consensus 185 ~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpD---g~~la~~s~~~~~~~l~~~dl~~g-----~~-~~l~~------- 245 (433)
T PRK04922 185 ALQVADSDGY---NPQTILRSAEPILSPAWSPD---GKKLAYVSFERGRSAIYVQDLATG-----QR-ELVAS------- 245 (433)
T ss_pred EEEEECCCCC---CceEeecCCCccccccCCCC---CCEEEEEecCCCCcEEEEEECCCC-----CE-EEecc-------
Confidence 6889998643 34455556678899999999 7778777643 36999998752 11 11000
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
......+++|+|+++.++++.+.+| .|++||+.... +..+..+.......+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---------------------------~~~lt~~~~~~~~~~ 298 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---------------------------LTRLTNHFGIDTEPT 298 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---------------------------eEECccCCCCccceE
Confidence 2333457899999995555666666 58888887521 111222223456789
Q ss_pred ECCCCCEEEEEEC-CCe--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. +|. |.++|+.+++... +..+......++|+|||++|+..+.++ .|.+||+.+++.. .+.
T Consensus 299 ~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 299 WAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 9999998887764 444 6667777665432 222233445789999999988765433 6999999887655 333
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEECCCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMD 428 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lwd~~~~ 428 (548)
+........|+| || ++|+..+. ...|.++|+..+
T Consensus 377 -~~~~~~~p~~sp-------dG------~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 -PGSLDESPSFAP-------NG------SMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -CCCCCCCceECC-------CC------CEEEEEEecCCceEEEEEECCCC
Confidence 333455678999 98 55555554 346888888543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=132.30 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=162.1
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.....||.+-|.++.|+.+|.+|+++++| .+.|||.-. .++++.+. .|..+|.|+.|-|... ...+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCC-CeEEEeccCcceE
Confidence 44667999999999999999999999999 999999875 55777774 5888999999999864 6788999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+++|+..... .+.. ............|..+|..|+-.|++++.|.++++||+|+-||++.............
T Consensus 120 ~lfdl~~~~~-~~~d-~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~------ 191 (758)
T KOG1310|consen 120 KLFDLDSSKE-GGMD-HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS------ 191 (758)
T ss_pred EEEecccccc-cccc-cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH------
Confidence 9999985210 0000 0000011112248889999999999988999999999999999986332221110000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC--------Ce----------EEEee-eec
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK--------EQ----------LICGG-KSY 340 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~--------~~----------~~~~~-~~~ 340 (548)
.+..+...--...|+..+| +..+|++|+.|-..++||.+. +. ++..+ .+|
T Consensus 192 ----------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 192 ----------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred ----------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 0000111113567899999 567899999999999999532 11 11111 111
Q ss_pred C--------Cc---eEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 341 Y--------GA---LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 341 ~--------~~---v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
. .. ++-+.|+|+|.-|++.-....|+++|+..++.
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 1 12 45568999998777777777999999987653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=113.22 Aligned_cols=178 Identities=16% Similarity=0.264 Sum_probs=132.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee-eeeeccCCcccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG-AHHYNKDGSVNN 230 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~-~~~~~~~~~~~~ 230 (548)
.|.|||-.. .+++..+.|.. .|..+.+.++ .++.-..+.|++|...... +.+.. .... +.
T Consensus 76 kviIWDD~k--~~~i~el~f~~-~I~~V~l~r~------riVvvl~~~I~VytF~~n~----k~l~~~et~~------NP 136 (346)
T KOG2111|consen 76 KVIIWDDLK--ERCIIELSFNS-EIKAVKLRRD------RIVVVLENKIYVYTFPDNP----KLLHVIETRS------NP 136 (346)
T ss_pred eEEEEeccc--CcEEEEEEecc-ceeeEEEcCC------eEEEEecCeEEEEEcCCCh----hheeeeeccc------CC
Confidence 688999444 56899999764 8999999887 5556667799999887521 11111 1111 12
Q ss_pred cceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 231 SRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..+.+++-..+.. +||. |..-|.|+|-|+.... .++-.....|...|.|++.+.
T Consensus 137 kGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~------------------------~~~p~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 137 KGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTK------------------------PNAPSIINAHDSDIACVALNL 191 (346)
T ss_pred CceEeecCCCCce-EEEcCCCccceEEEEEhhhcC------------------------cCCceEEEcccCceeEEEEcC
Confidence 2233333333333 4444 5567999999998621 123466788999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCCeEEEeeeec--CCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGY-LRVFDYSKEQLICGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+|.++|+++..|+ |||||..+++.+..++.. ...|.|++|||+..+|++.++.|+|+|+.++..
T Consensus 192 ~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 192 QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999998 789999999999887643 347999999999999999999999999998763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-11 Score=126.24 Aligned_cols=220 Identities=14% Similarity=0.078 Sum_probs=139.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++||.+... .+.+..+...+...+|+|+ |..|+..+. +..|++|++.... .+.+. .
T Consensus 180 ~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPD---G~~la~~s~~~g~~~i~i~dl~~G~---~~~l~---~------- 240 (429)
T PRK03629 180 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD---GSKLAYVTFESGRSALVIQTLANGA---VRQVA---S------- 240 (429)
T ss_pred eEEEEcCCCCC---CEEeecCCCceeeeEEcCC---CCEEEEEEecCCCcEEEEEECCCCC---eEEcc---C-------
Confidence 78999988643 2334446668899999999 667776543 3468999986511 11111 0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
....+..++|+|||+.++++...+| .|++||+.... +..+..+...+....
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------------------------~~~lt~~~~~~~~~~ 293 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------------------IRQVTDGRSNNTEPT 293 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------------------------EEEccCCCCCcCceE
Confidence 1233456899999994444445555 48888886521 111111224567889
Q ss_pred ECCCCCEEEEEECC-Ce--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGRD-GY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~d-g~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+.+ +. |.++|+.+++.. .+...........|+|||++|+..+.+ ..|.+||+++++... +.
T Consensus 294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt 371 (429)
T PRK03629 294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT 371 (429)
T ss_pred ECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC
Confidence 99999988877754 44 555577666443 333333455678999999998876543 368899998876443 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe---EEEEECCCCeEEeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR---LLLWDLEMDEIVVPL 434 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~---i~lwd~~~~~~~~~~ 434 (548)
.. .......|+| || .+|+..+.++. +.+|++. +.....+
T Consensus 372 ~~-~~~~~p~~Sp-------DG------~~i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 372 DT-FLDETPSIAP-------NG------TMVIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 11 2234677898 99 67877777653 7777874 3333444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-11 Score=113.31 Aligned_cols=201 Identities=16% Similarity=0.235 Sum_probs=128.7
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++.=..++++..| .|+|||-.. +.+..-..-...+++|++|.|.+. ..|++|... -|.+|........
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsa--selavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSA--SELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCc--ceeeeeecc-eeEEEEcCccccc
Confidence 4467887744344455555 999999876 223333333567999999999953 367777665 5889987652111
Q ss_pred ccccee--e--eeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 212 VGKKLV--G--AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 212 ~~~~~~--~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
++... . .....+ .. ....|++|.|.+|+. .+++++ .|..|.|||.+++.....
T Consensus 176 -~r~~~~~s~~~~qvl~-~p-gh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL------------------ 233 (445)
T KOG2139|consen 176 -NRNIRMMSTHHLQVLQ-DP-GHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPL------------------ 233 (445)
T ss_pred -ccccccccccchhhee-CC-CCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccc------------------
Confidence 11100 0 000111 11 237999999999998 777766 567899999987432111
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
. ...-+.+.-+.||||+.+|+.+.-|+..++|+.... ..... .--.+.|...+|+|+|.+|+.... +.-
T Consensus 234 ------~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 234 ------I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred ------c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 1 011277889999999999999999999999965433 22222 223458999999999997554332 233
Q ss_pred EEEEC
Q 008939 366 QVWSM 370 (548)
Q Consensus 366 ~vwd~ 370 (548)
++|.+
T Consensus 304 ~lysl 308 (445)
T KOG2139|consen 304 RLYSL 308 (445)
T ss_pred eEEEE
Confidence 44443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-11 Score=126.42 Aligned_cols=217 Identities=15% Similarity=0.114 Sum_probs=142.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+++|.+.. ..+.+..+...+.+.+|+|+ +..|+..+. +..|++||+.... .+.+. .
T Consensus 183 ~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpD---G~~lay~s~~~g~~~i~~~dl~~g~---~~~l~----------~ 243 (435)
T PRK05137 183 RLAIMDQDGA---NVRYLTDGSSLVLTPRFSPN---RQEITYMSYANGRPRVYLLDLETGQ---RELVG----------N 243 (435)
T ss_pred EEEEECCCCC---CcEEEecCCCCeEeeEECCC---CCEEEEEEecCCCCEEEEEECCCCc---EEEee----------c
Confidence 7888888653 44556667778999999999 667777654 3579999987621 01111 1
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...+...+|+|+|+.++++.+.++. |++||+.... +..+..+........
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------~~~Lt~~~~~~~~~~ 296 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------------------------TTRLTDSPAIDTSPS 296 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------------------------eEEccCCCCccCcee
Confidence 34566788999999955566666665 6666766421 112222334456789
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. +| .|.+||+..++... +..+.+.+....|+|||++|+....+ ..|.+||+..+.. ..+.
T Consensus 297 ~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 297 YSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred EcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9999999888764 33 68888887665433 33334556778999999998876543 3688899865543 3333
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC------CeEEEEECCCCeE
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD------TRLLLWDLEMDEI 430 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D------g~i~lwd~~~~~~ 430 (548)
....+..+.|+| || +.|+..+.+ ..|.++|+..+..
T Consensus 375 -~~~~~~~p~~sp-------DG------~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 375 -SGFLVEGPTWAP-------NG------RVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CCCCCCCCeECC-------CC------CEEEEEEccCCCCCcceEEEEECCCCce
Confidence 223467789999 98 455544432 3678888876544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-11 Score=118.95 Aligned_cols=317 Identities=15% Similarity=0.143 Sum_probs=188.2
Q ss_pred EEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc
Q 008939 146 IFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 146 ~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
++..++ .|.|.|..+ .+.+..+.........+.|+|+ ++++++.+.||.|.++|+.+ .+++....
T Consensus 10 V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~D---gr~~yv~~rdg~vsviD~~~------~~~v~~i~--- 75 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPD---GRYLYVANRDGTVSVIDLAT------GKVVATIK--- 75 (369)
T ss_dssp EEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT----SSEEEEEETTSEEEEEETTS------SSEEEEEE---
T ss_pred EEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCC---CCEEEEEcCCCeEEEEECCc------ccEEEEEe---
Confidence 344444 999999988 4488888765433455788998 88999999999999999987 23443333
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-------
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI------- 297 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 297 (548)
......+++++++|+.++++...++.+.++|.++. ++++.+..
T Consensus 76 ----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--------------------------e~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 76 ----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--------------------------EPVKTIPTGGMPVDG 125 (369)
T ss_dssp -----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----------------------------EEEEEE--EE-TTT
T ss_pred ----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccc--------------------------cceeecccccccccc
Confidence 34567899999999944444557899999998762 12222211
Q ss_pred cCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEE-eeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCce
Q 008939 298 CQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRK 374 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~ 374 (548)
....+.++..+|....++..-. .+.|.+.|+...+.+. .............|+|++++++++ ..++.|-++|.++++
T Consensus 126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 1246778888888776655554 4888888987654332 222234567789999999987664 557799999999988
Q ss_pred eEEecc----CCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 375 VVAWGE----GHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 375 ~~~~~~----~h~~~V~~v~~~p~----~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
.+..+. .|...+..+- +|. |.... .+ ...++.-....+.+||....+.++.+........+..+
T Consensus 206 ~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~-~~------~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~th 277 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFP-HPGFGPVWATSG-LG------YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTH 277 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEB-SS------SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--
T ss_pred EEEEeecccccccccccccc-CCCcceEEeecc-cc------ceecccccCCccccchhhcCeEEEEEECCCCcceeecC
Confidence 776553 3444554432 331 10000 11 11222222346678999999999999876555555566
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCCe---EEEEECCC-eEEEEeCCCCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQES---VLTVCREG-HIKIWMRPGVA 516 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd~---l~t~s~Dg-~I~iW~~~~~~ 516 (548)
|++...--+. ..+.....+.++|..+.+.+..+... ...+..+.|++|+ ++|.-.++ .|.++|-.+.+
T Consensus 278 P~s~~vwvd~--~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 278 PDSRYVWVDT--FLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp TT-SEEEEE---TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred CCCccEEeec--cCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 7663111110 11223567889999988777666532 2358899999985 55555444 89999987755
|
... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.4e-12 Score=114.05 Aligned_cols=117 Identities=26% Similarity=0.495 Sum_probs=90.5
Q ss_pred CcceEEEEEecCCCcEEEE--EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVV--GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.++|.+++|+|++. .|++ |..+..|.+||++. .++.. .+...++.+.|
T Consensus 59 ~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~~---------------------------~~i~~--~~~~~~n~i~w 108 (194)
T PF08662_consen 59 EGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVKG---------------------------KKIFS--FGTQPRNTISW 108 (194)
T ss_pred CCceEEEEECcCCC-EEEEEEccCCcccEEEcCcc---------------------------cEeEe--ecCCCceEEEE
Confidence 45799999999999 5544 44678999999862 11222 23467889999
Q ss_pred CCCCCEEEEEEC---CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC------CCeEEEEECCCceeEEe
Q 008939 308 STDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE------DDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 308 sp~g~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------dg~I~vwd~~~~~~~~~ 378 (548)
+|+|++|++++. .|.|.+||.++.+.+.... | ..+..++|+|||++|+++.. |..++||+.. |+.+..
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 999999999874 3679999999888887765 3 34789999999999998864 7889999985 665544
Q ss_pred c
Q 008939 379 G 379 (548)
Q Consensus 379 ~ 379 (548)
.
T Consensus 186 ~ 186 (194)
T PF08662_consen 186 K 186 (194)
T ss_pred c
Confidence 3
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-12 Score=123.56 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=174.4
Q ss_pred CCCCCCceeEEeCCCCCEEEEec-CC-eEEEEEccCCC--------CCCe------------------EEEecCC-----
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQD--------KDPI------------------KSIHFSN----- 173 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~--------~~~i------------------~~~~~~~----- 173 (548)
-.+...-+.+..+|||+|+++.+ -+ .|++||+..-. .+.| +.+.||.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 34566667899999999988754 45 99999997632 0111 1222221
Q ss_pred ------CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 174 ------SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 174 ------~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
.....++++.. ...|++++....|+-++|++ ++-+.. .......+++|..++... +|+
T Consensus 128 y~~RIP~~GRDm~y~~~---scDly~~gsg~evYRlNLEq-----GrfL~P-------~~~~~~~lN~v~in~~hg-Lla 191 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKP---SCDLYLVGSGSEVYRLNLEQ-----GRFLNP-------FETDSGELNVVSINEEHG-LLA 191 (703)
T ss_pred eeeecCcCCccccccCC---CccEEEeecCcceEEEEccc-----cccccc-------cccccccceeeeecCccc-eEE
Confidence 12233444444 33488888888999999987 333322 223568899999999988 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+|..+|.|.+||.+....... +....... . .........|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~-----------s---~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGT-LDAASSVN-----------S---HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ecccCceEEEecchhhhhhee-eecccccC-----------C---CccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 999999999999986322111 00000000 0 00000114599999999999999999999999999
Q ss_pred CCCCeEEEe-eeecCCceEEEEEccC--CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 328 YSKEQLICG-GKSYYGALLCCAWSMD--GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 328 ~~~~~~~~~-~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+++.+++.. -....-+|..+.|.+. ++.+++. +...++|||-.+++....++ ....+..+++-| ++
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p-------~s-- 325 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVP-------GS-- 325 (703)
T ss_pred cccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeec-------CC--
Confidence 998887654 2334558999999776 3445554 56789999999999998888 455599999998 66
Q ss_pred cceeEEEEEEeCCCeEEEEECC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
-+++++-.+..+..|=+.
T Consensus 326 ----Gm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 326 ----GMFFTANESSKMHTYYIP 343 (703)
T ss_pred ----ceEEEecCCCcceeEEcc
Confidence 488888888877766554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=129.26 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=148.0
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEcc--CCCEEEEEeCCCeEEEE
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM--DGKYILTGGEDDLVQVW 368 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~sp--dg~~l~sgs~dg~I~vw 368 (548)
.+.+.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999999888877665 57999999999998 44689999999999999
Q ss_pred ECCCc----------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-
Q 008939 369 SMEDR----------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG- 437 (548)
Q Consensus 369 d~~~~----------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~- 437 (548)
|+... +....+..|...|..|+-.| ++. ..+.++++||+|+-+|++....-..-...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p-------~~P-----htfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP-------NGP-----HTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCC-------CCC-----ceEEEecCCcceeeecccCCccCCcccccc
Confidence 99842 34455667999999999888 552 58999999999999999974321111100
Q ss_pred ----------CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC-C------------c-----eEEe-ecCC---
Q 008939 438 ----------PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL-S------------P-----LVAH-RVHT--- 485 (548)
Q Consensus 438 ----------~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~-~------------~-----~~~~-~~h~--- 485 (548)
-...++.+++. ....+.+|..++-.+++|.+.. + | +.-+ .+|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred HHHHHhchhhheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 01122333333 2455678888888888883211 1 0 1111 1222
Q ss_pred --------CCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 486 --------EPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 486 --------~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
..++-+.|+|++ |+..-.-..|.++|+...+
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 125678899984 4433344578999987655
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-12 Score=123.79 Aligned_cols=266 Identities=15% Similarity=0.186 Sum_probs=183.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe---eEeeecC------
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI---ARWHICQ------ 299 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~------ 299 (548)
+....+.|..+|||+.++++|..--.|++||+..- .+...-..-.+...|.+....+++...+ +.+..|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc-eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 67888999999999988888999999999999751 1111111112223343333333322111 1111221
Q ss_pred -----CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce
Q 008939 300 -----GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 374 (548)
Q Consensus 300 -----~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~ 374 (548)
..-..++++.-..-|+.++....|.-++++.|+.+..+....+.+++|..++...+|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 223345555433335555556679999999999998888888999999999999999999999999999999887
Q ss_pred eEEeccC------CCC-----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCC
Q 008939 375 VVAWGEG------HNS-----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGG 441 (548)
Q Consensus 375 ~~~~~~~------h~~-----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~ 441 (548)
.+..+.. |.. .|+++.|+- || ..++.|..+|.+.|||+++.+.+..-.+. -++.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d-------~g------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRD-------DG------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecC-------Cc------eeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 6665542 322 499999986 78 88999999999999999998887655442 2333
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.+.|.... +....+......+++||-.++++...+..- ..++.+++-|+. +++|-++..+-.+=++.
T Consensus 276 ~l~~~~~~-----~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 276 KLDWQDTD-----QQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eecccccC-----CCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 33332221 111122223456889999999998888754 459999999973 78888888887777664
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-11 Score=124.34 Aligned_cols=222 Identities=20% Similarity=0.174 Sum_probs=137.1
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|.... ....+..+...+.+.+|+|+ ++.|+..+.+ ..|++||+... +. .....
T Consensus 177 ~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPD---G~~la~~s~~~~~~~I~~~dl~~g-----~~-~~l~~------- 237 (427)
T PRK02889 177 QLQISDADGQ---NAQSALSSPEPIISPAWSPD---GTKLAYVSFESKKPVVYVHDLATG-----RR-RVVAN------- 237 (427)
T ss_pred EEEEECCCCC---CceEeccCCCCcccceEcCC---CCEEEEEEccCCCcEEEEEECCCC-----CE-EEeec-------
Confidence 6778887542 33444456678889999999 7778776643 35999998762 11 11111
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....+...+|+|++..++++.+.+|...||.++..+.. ...+..+.+......|+
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-------------------------~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-------------------------LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-------------------------cEECCCCCCCCcCeEEc
Confidence 23345688999999945556778888777776542211 11222223445667899
Q ss_pred CCCCEEEEEEC-CCeEEEEeC--CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEeccCC
Q 008939 309 TDGTYLATVGR-DGYLRVFDY--SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 309 p~g~~l~s~~~-dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~~h 382 (548)
|||+.|+..+. ++...+|.+ ..++... +..........+|+|||++|+..+.++ .|.+||+.+++......
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-- 369 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-- 369 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--
Confidence 99998887664 456666654 4444322 211223344678999999998776554 69999998876543322
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEECCCCeEEeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg---~i~lwd~~~~~~~~~~ 434 (548)
........|+| || +.|+..+.++ .+.+.++. +.....+
T Consensus 370 ~~~~~~p~~sp-------dg------~~l~~~~~~~g~~~l~~~~~~-g~~~~~l 410 (427)
T PRK02889 370 TTRDESPSFAP-------NG------RYILYATQQGGRSVLAAVSSD-GRIKQRL 410 (427)
T ss_pred CCCccCceECC-------CC------CEEEEEEecCCCEEEEEEECC-CCceEEe
Confidence 23446788999 98 5665555433 35555653 4434333
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-11 Score=112.44 Aligned_cols=253 Identities=16% Similarity=0.156 Sum_probs=160.1
Q ss_pred CCceeEEeCCCCCEEEEec-CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCC-ceEEEEEcCCcEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNV-GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDG-HDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~-~~l~~g~~dg~I~iwdl~~ 207 (548)
..|..+.|..|.-+++.+. .| .|.+|++..++ -..++...++......|+|+ | ..|.+..-+-.|.+|.+.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPd---grhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPD---GRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCC---cceEeeeecceeEEEEEEecc
Confidence 3455678888877776654 45 99999999854 67788888889999999999 5 4566666688899999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE---EE-----E------EcCCCCCCCCCcccc
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL---YV-----Y------EKSKDGAGDSSFPVI 273 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v---~v-----w------d~~~~~~~~~~~~~~ 273 (548)
+ +..-... .+..+..++|+|+++ +.+.+++-... .+ | ++++-... .+
T Consensus 124 ~------~~~~~~~-------pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt--gi--- 184 (447)
T KOG4497|consen 124 Q------KGYLLPH-------PKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT--GI--- 184 (447)
T ss_pred c------eeEEecc-------cccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc--Cc---
Confidence 3 1111111 234456677777776 44444432111 11 1 11110000 00
Q ss_pred cccceeeeecCCCCCCCCeeEeee---------c-CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-------
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHI---------C-QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG------- 336 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~---------h-~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~------- 336 (548)
....+.+-+..|+. | .-.+..++|+|.+++|++|+.|+.+||.+--+.+....
T Consensus 185 ----------eWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~ 254 (447)
T KOG4497|consen 185 ----------EWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY 254 (447)
T ss_pred ----------eECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhc
Confidence 00111222222221 1 24688899999999999999999999865322211100
Q ss_pred -----------------------------------------------------ee------ecCCceEEEEEccCCCEEE
Q 008939 337 -----------------------------------------------------GK------SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 337 -----------------------------------------------------~~------~~~~~v~~l~~spdg~~l~ 357 (548)
++ ...-.+--++|++|..+++
T Consensus 255 ~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~a 334 (447)
T KOG4497|consen 255 HDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAA 334 (447)
T ss_pred cCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEe
Confidence 00 0112356689999999888
Q ss_pred EEeCC--CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGED--DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~d--g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+-.+. +.+-+||++..+....+. ...+|....|+| .. .+|+.+.....+.+|...-..++
T Consensus 335 Trnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-------~~------prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 335 TRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-------GR------PRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred eecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-------CC------ceEEEEcCCceEEEEcCCCceEE
Confidence 86543 579999999877666555 677899999999 54 56777777778999987664443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=126.78 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=138.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCC--cE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSG--DV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg--~I 200 (548)
.+...+...+|+|||+.|++... + .|++||+.++.. ..+...+....+.+|+|+ +..|+ +...+| +|
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~SpD---G~~l~~~~s~~g~~~I 274 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSPD---GRRLALTLSRDGNPEI 274 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECCC---CCEEEEEEeCCCCceE
Confidence 34567888999999999998652 3 799999987542 233323445567899999 66565 445555 59
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||+... .+.... .+.......+|+|++..++++...+|. |+++|+....
T Consensus 275 y~~d~~~g------~~~~lt-------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-------------- 327 (433)
T PRK04922 275 YVMDLGSR------QLTRLT-------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-------------- 327 (433)
T ss_pred EEEECCCC------CeEECc-------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------------
Confidence 99998752 111111 123345678999999944444445565 5555554311
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
...+..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||+.
T Consensus 328 -------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 328 -------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred -------------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCE
Confidence 111111113344689999999998876443 6999999887755 332 2223456799999998
Q ss_pred EEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 356 ILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 356 l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
|+..+.+ ..|.++++. +.....+..+.+.+...+|+|
T Consensus 393 i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 393 VLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 8776653 468888885 445556655667777778876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=126.19 Aligned_cols=221 Identities=18% Similarity=0.226 Sum_probs=141.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~I~i 202 (548)
.+...+...+|+|||+.|++... + .|++||+.++. . ..+...+....+.+|+|+ +..|+ +...+|...|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~-~~l~~~~g~~~~~~~SPD---G~~la~~~~~~g~~~I 266 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--R-RVVANFKGSNSAPAWSPD---GRTLAVALSRDGNSQI 266 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--E-EEeecCCCCccceEECCC---CCEEEEEEccCCCceE
Confidence 45667888999999999988653 2 69999998754 2 233323345678899999 66666 4567777666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++.. +....... .+........|+||++.+++++..+|...||.++..+..
T Consensus 267 y~~d~~----~~~~~~lt-------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---------------- 319 (427)
T PRK02889 267 YTVNAD----GSGLRRLT-------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---------------- 319 (427)
T ss_pred EEEECC----CCCcEECC-------CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc----------------
Confidence 655431 11111100 123345667899999944445555677777776532211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
...+..+.......+|+|||++|+..+.++ .|.+||+.+++...... . .......|+|||+.|+..
T Consensus 320 ---------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 320 ---------AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYA 388 (427)
T ss_pred ---------eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEE
Confidence 011111112234578999999999877654 69999998876543222 2 234678999999988877
Q ss_pred eCCC---eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 360 GEDD---LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 360 s~dg---~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.++ .+.+.++ +++....+..+.+.+...+|+|
T Consensus 389 ~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 389 TQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 7544 3556666 4555666666777788888887
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-13 Score=129.61 Aligned_cols=231 Identities=12% Similarity=0.149 Sum_probs=180.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.-.++.+.|..+|+.++.++.+ .|--+|+.+.. ....+.. ...|..+.|-.+ .. +++......++|||-..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~--L~~Ei~v-~Etv~Dv~~LHn---eq-~~AVAQK~y~yvYD~~G- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK--LHFEINV-METVRDVTFLHN---EQ-FFAVAQKKYVYVYDNNG- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce--eeeeeeh-hhhhhhhhhhcc---hH-HHHhhhhceEEEecCCC-
Confidence 3456789999999999998887 99999998844 5555553 346777777765 33 44445666899998543
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
..+.+.. ....|..+.|.|..- +|++++..|.+..-|+..+ .
T Consensus 201 -----tElHClk--------~~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~G-k----------------------- 242 (545)
T KOG1272|consen 201 -----TELHCLK--------RHIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTG-K----------------------- 242 (545)
T ss_pred -----cEEeehh--------hcCchhhhcccchhh-eeeecccCCceEEEeechh-h-----------------------
Confidence 3333322 356889999999987 8999999999999999873 2
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
.+..+....+.+..|+-+|-...+-+|...|+|.+|.....+.+..+..|.++|.+|++.++|.+++|.+.|..++||
T Consensus 243 --lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 243 --LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW 320 (545)
T ss_pred --hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe
Confidence 233333334778888889988899999999999999999999888888999999999999999999999999999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|++....+.++.. .-+...++|+- -| +++++....|.||.
T Consensus 321 DlR~~~ql~t~~t-p~~a~~ls~Sq-------kg--------lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 321 DLRNFYQLHTYRT-PHPASNLSLSQ-------KG--------LLALSYGDHVQIWK 360 (545)
T ss_pred eeccccccceeec-CCCcccccccc-------cc--------ceeeecCCeeeeeh
Confidence 9998876666553 45667788876 44 66777778899994
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-12 Score=130.80 Aligned_cols=264 Identities=17% Similarity=0.246 Sum_probs=178.8
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEE------ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSI------HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~------~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
++++++.+-.+.+||+..+. .+..+ ..|-....-.. .+.+++.+..-+.++.-+...+ ....
T Consensus 18 ~~llag~gp~i~~yd~~s~~--li~~~~~~~~~~~H~~e~~~~l------~~~~~v~~~~~~~v~~~~~~~~---~~~~- 85 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGC--LIRHLIQSKILEVHRGEGKVKL------LSGKIVTCAKSDEVYVKEASNQ---IIER- 85 (967)
T ss_pred ceeeecCCCceEEeeCCchh--Hhhhhhhhccccccccccccee------ccceEEEEEeecceeecchhhh---hhhh-
Confidence 78988888899999998754 22222 11200000001 1456677777666655443321 1111
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
....+....+.-+.. .++....+..+.+||... +......+... ...+
T Consensus 86 ------------~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~-~~~~~~i~~~e-----------------r~~l- 133 (967)
T KOG0974|consen 86 ------------FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKN-SSVLSKIQSDE-----------------RCTL- 133 (967)
T ss_pred ------------ccccccccchhhhcc-eEEEEEcCceEEEEeccc-CceehhcCCCc-----------------eEEE-
Confidence 233334344444445 788888889999999864 22211111000 0000
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
....-+-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|..+.|+-||.++++.++|..+++|++++.+..
T Consensus 134 ---~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~ 210 (967)
T KOG0974|consen 134 ---YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL 210 (967)
T ss_pred ---EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence 11223445677779999999999999999733333357899999999999999999999999999999999998776
Q ss_pred E-eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 377 A-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 377 ~-~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
. ..-+|...|+.+.|+| ..+++++.|.+.++|+....++ .
T Consensus 211 ~~~~fgHsaRvw~~~~~~---------------n~i~t~gedctcrvW~~~~~~l-~----------------------- 251 (967)
T KOG0974|consen 211 GCTGFGHSARVWACCFLP---------------NRIITVGEDCTCRVWGVNGTQL-E----------------------- 251 (967)
T ss_pred CcccccccceeEEEEecc---------------ceeEEeccceEEEEEeccccee-h-----------------------
Confidence 5 6678999999999998 5799999999999996543222 1
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+| ...|..++..++. ++|++.|+.+++|++.+..
T Consensus 252 ------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 252 ------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 12234 3468888888863 8999999999999976644
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=130.38 Aligned_cols=297 Identities=11% Similarity=0.172 Sum_probs=206.9
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
..+..+|.|+-++.++...+++-|+...-..+..-.+..+-.+-.+.|+|..+ ..+-++......-.+|++... ..
T Consensus 28 ~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a-~~~wiVsts~qkaiiwnlA~s---s~ 103 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPA-KPYWIVSTSNQKAIIWNLAKS---SS 103 (1081)
T ss_pred cceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCC-CceeEEecCcchhhhhhhhcC---Cc
Confidence 35777899999999888899999998765455555555666888889999865 345556666666778988752 12
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCee
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (548)
+.+. |... .|...|+++.|+|..+.++++++.|-.+..||++.. ..|+.
T Consensus 104 ~aIe----f~lh--ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------------------------~~p~y 152 (1081)
T KOG0309|consen 104 NAIE----FVLH--GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------------------------HRPFY 152 (1081)
T ss_pred cceE----EEEe--cCccceeccccCCCCCcceeeccccccceeeeccCC-------------------------Cccee
Confidence 2222 2122 489999999999999889999999999999999973 34555
Q ss_pred EeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 008939 294 RWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM 370 (548)
Q Consensus 294 ~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~ 370 (548)
.|..-...-..++|+- ++..| +.+....|++||++.+ ..++.+++|...|+.++|..-- ..+.+++.|++|+.||.
T Consensus 153 s~~~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eeecccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 5555456677899987 55444 4556778999999876 4678889998889888886532 35788999999999999
Q ss_pred CCceeE-EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 371 EDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 371 ~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
+..... .....-..+|..-.|.|.| +| +.+.-.-.+..+.+.+.+.....
T Consensus 232 ~kSt~e~~~~vtt~~piw~~r~~Pfg-----~g------~~~mp~~G~n~v~~~~c~n~d~e------------------ 282 (1081)
T KOG0309|consen 232 SKSTTESKRTVTTNFPIWRGRYLPFG-----EG------YCIMPMVGGNMVPQLRCENSDLE------------------ 282 (1081)
T ss_pred cccccccceeccccCcceeccccccC-----ce------eEeccccCCeeeeeccccchhhh------------------
Confidence 764321 2222355677777787732 33 33322222234444444332211
Q ss_pred CccccCCeeeecccCCCCceeec-CCCCceEEeecCCCCeeEEEEeC-----------C-eEEEEECCCeEEEEeCCCC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDV-PKLSPLVAHRVHTEPLSGLIFTQ-----------E-SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~-~~~~~~~~~~~h~~~V~~l~fsp-----------d-~l~t~s~Dg~I~iW~~~~~ 515 (548)
|++ ....|+..+.||.+.|....|.. | .|+|=+.|..+|+|-+...
T Consensus 283 --------------------~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 283 --------------------WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --------------------hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 211 23468899999999998777753 1 2999999999999987654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-11 Score=122.78 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCCCceeEEeCCCCCEEEEec---CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCc--E
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNV---GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGD--V 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~---~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~--I 200 (548)
.|...+...+|+|||+.|++.+ ++ .|++||+.++. ...+...+..+...+|+|+ +..|+ +...+|. |
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SPD---G~~la~~~~~~g~~~I 272 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSPD---GRKVVMSLSQGGNTDI 272 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECCC---CCEEEEEEecCCCceE
Confidence 5667889999999999998864 23 89999998754 2334444556778899999 66565 4455554 7
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCC--cEEEEEcCCCCCCCCCcccccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADG--NLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg--~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
++||++.. .+.... .+........|+|+++ .|+..+ .+| .|++||+... .
T Consensus 273 y~~d~~~~------~~~~Lt-------~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~-~------------ 325 (435)
T PRK05137 273 YTMDLRSG------TTTRLT-------DSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS-N------------ 325 (435)
T ss_pred EEEECCCC------ceEEcc-------CCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC-C------------
Confidence 77787652 111111 1334456789999999 555444 444 5777776531 1
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
...+..+.+.+....|+|||++|+....+ ..|.+||+..+... .+. ....+....|+|||+
T Consensus 326 --------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 326 --------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred --------------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCC
Confidence 11222223456678899999999887654 36888898655432 222 223467789999999
Q ss_pred EEEEEeCC------CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 355 YILTGGED------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 355 ~l~sgs~d------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.|+..+.+ ..|.++|+..+.. ..+. ....+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 88765442 2578888876544 3444 344466667766
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-10 Score=110.19 Aligned_cols=254 Identities=20% Similarity=0.256 Sum_probs=157.0
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeeccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQ 210 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~ 210 (548)
...+.|++||+++.+.+.| .|.++|+.+.+ .+.++.. ...+.+++++++ |++++++. ..+.|.++|.++.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s~D---G~~~~v~n~~~~~v~v~D~~tl-- 110 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVSPD---GKYVYVANYEPGTVSVIDAETL-- 110 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE--T---TTEEEEEEEETTEEEEEETTT---
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEcCC---CCEEEEEecCCCceeEeccccc--
Confidence 3457899999998887777 99999999854 8888885 447899999999 77888775 6899999998761
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++.+.+ ......... ...++..|..+|... .+++.-. .+.|.+.|......
T Consensus 111 e~v~~I-~~~~~~~~~--~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~------------------------ 162 (369)
T PF02239_consen 111 EPVKTI-PTGGMPVDG--PESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKN------------------------ 162 (369)
T ss_dssp -EEEEE-E--EE-TTT--S---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSC------------------------
T ss_pred cceeec-ccccccccc--cCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccc------------------------
Confidence 111111 111111111 356788898899888 5666555 47888888765211
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeee------------------------------
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGK------------------------------ 338 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~------------------------------ 338 (548)
+....-.-........|+|+++|++.+ ..+..|-++|.++++++..+.
T Consensus 163 -~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 163 -LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp -EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred -cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 010111112456778899998887664 455678888887766543321
Q ss_pred -------------------------ecCCceEEEEEccCCCEEEEE----eCCCeEEEEECCCceeEEeccC-CCCCeEE
Q 008939 339 -------------------------SYYGALLCCAWSMDGKYILTG----GEDDLVQVWSMEDRKVVAWGEG-HNSWVSG 388 (548)
Q Consensus 339 -------------------------~~~~~v~~l~~spdg~~l~sg----s~dg~I~vwd~~~~~~~~~~~~-h~~~V~~ 388 (548)
...++ .-+..+|+++++.+. .+.+.|.++|.++.+.+..+.. -...+..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h 320 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVH 320 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEec
Confidence 11112 446779999999988 4558999999999988877752 2235889
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEECCCCeEEeeeec
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~ 436 (548)
+.|++ ||. ...+|.-.++ .|.+||..+.+++..+..
T Consensus 321 ~ef~~-------dG~-----~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 321 MEFNP-------DGK-----EVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEE-T-------TSS-----EEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred cEECC-------CCC-----EEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 99999 983 3445554444 899999999999888764
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-09 Score=104.89 Aligned_cols=264 Identities=17% Similarity=0.261 Sum_probs=165.2
Q ss_pred CCCceeEEeCCCCCEEEEecC----C-eEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG----D-AIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~----d-~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~ 201 (548)
...+..+++++++++|.+... + .|..|++... ....+.........+..++++|+ +.+|+++. .+|.|.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~---g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD---GRFLYVANYGGGSVS 112 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT---SSEEEEEETTTTEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC---CCEEEEEEccCCeEE
Confidence 445567999999999888644 2 8888888763 33456666556678889999999 77788776 488999
Q ss_pred EEEeeecccccccceeeeeee---ccC-CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 202 SVSLRQQLQDVGKKLVGAHHY---NKD-GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
++++.... .. ........+ .+. ..-......++.|+|+++.++++--....|++|+++........
T Consensus 113 v~~l~~~g-~l-~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-------- 182 (345)
T PF10282_consen 113 VFPLDDDG-SL-GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-------- 182 (345)
T ss_dssp EEEECTTS-EE-EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE--------
T ss_pred EEEccCCc-cc-ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE--------
Confidence 99998620 01 111111110 000 01124567899999999944444445568999999764321100
Q ss_pred eeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CCeE--EEeeee----c--CCceE
Q 008939 278 QFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KEQL--ICGGKS----Y--YGALL 345 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~~~--~~~~~~----~--~~~v~ 345 (548)
...+.. .....+.++|+|+++++++.. .++.|.+|++. ++.. +..+.. . .....
T Consensus 183 --------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 183 --------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp --------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred --------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 011111 125678999999999887665 57789999998 4433 222221 1 12577
Q ss_pred EEEEccCCCEEEEEeC-CCeEEEEECCC--c--eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCe
Q 008939 346 CCAWSMDGKYILTGGE-DDLVQVWSMED--R--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTR 419 (548)
Q Consensus 346 ~l~~spdg~~l~sgs~-dg~I~vwd~~~--~--~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~ 419 (548)
.|+++|||++|++... ++.|.+|+++. + +.+..+......-+.++++| +| ++|+++. .++.
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-------~g------~~l~Va~~~s~~ 315 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-------DG------RYLYVANQDSNT 315 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-------TS------SEEEEEETTTTE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-------CC------CEEEEEecCCCe
Confidence 8999999999887664 67899999942 3 33444443455678999999 88 4555554 6789
Q ss_pred EEEEEC--CCCeEEee
Q 008939 420 LLLWDL--EMDEIVVP 433 (548)
Q Consensus 420 i~lwd~--~~~~~~~~ 433 (548)
|.+|++ ++|.+...
T Consensus 316 v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCcEEEe
Confidence 999976 46665443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-12 Score=121.09 Aligned_cols=271 Identities=17% Similarity=0.201 Sum_probs=188.9
Q ss_pred ccCCCCCCceeEEeCCC--CCEEEEecCC-eEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK--GTYIIFNVGD-AIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~--g~~l~~~~~d-~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.-++|...|....|-|. ..-|+.++.| .+++-.+.... .+.+..+.-|...+.-++..|.. ...|++++.|+.+
T Consensus 180 f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s--p~~f~S~geD~~v 257 (559)
T KOG1334|consen 180 FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS--PKPFLSCGEDAVV 257 (559)
T ss_pred cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCC--CCcccccccccce
Confidence 34688999998888774 3456666666 88888765422 23345555577888888888885 4479999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.-+|+++.. +..++.+... ... ..-..+.|+..|-..+.|++++.|-.+++||.+.-......- . ...
T Consensus 258 ~~~Dlr~~~--pa~~~~cr~~--~~~--~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~---~~~-- 325 (559)
T KOG1334|consen 258 FHIDLRQDV--PAEKFVCREA--DEK--ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-V---LDK-- 325 (559)
T ss_pred eeeeeccCC--ccceeeeecc--CCc--cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-h---hhh--
Confidence 999998732 2222221111 000 123678999999988899999999999999987522110000 0 000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--C----------eEEEe-eeecCC--ceE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--E----------QLICG-GKSYYG--ALL 345 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--~----------~~~~~-~~~~~~--~v~ 345 (548)
..|-+......-.|+|++|+.++..|++...|-.|.+|+-.. | ..+.. +++|.. .|.
T Consensus 326 --------f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVK 397 (559)
T KOG1334|consen 326 --------FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVK 397 (559)
T ss_pred --------cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccc
Confidence 011111111225799999998887777788888899995432 2 22222 677764 355
Q ss_pred EEE-EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 346 CCA-WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 346 ~l~-~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
++- |-|..+++++|+..|.|.||+-.+++.+..+++...-|+||.-+|+ - ..|++.|-|..|+||-
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~-------~------PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH-------L------PVLASSGIDHDVKIWT 464 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC-------C------chhhccCCccceeeec
Confidence 554 5678899999999999999999999999999987779999999983 2 5899999999999998
Q ss_pred CCCCeE
Q 008939 425 LEMDEI 430 (548)
Q Consensus 425 ~~~~~~ 430 (548)
-.+.+.
T Consensus 465 P~~~er 470 (559)
T KOG1334|consen 465 PLTAER 470 (559)
T ss_pred CCcccc
Confidence 755443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-10 Score=114.15 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=135.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+++|.... ..+.+..+...+...+|+|+ +..|+..... ..|++||+.+. +.. ....
T Consensus 171 ~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spd---g~~la~~~~~~~~~~i~v~d~~~g-----~~~-~~~~------- 231 (417)
T TIGR02800 171 ELQVADYDGA---NPQTITRSREPILSPAWSPD---GQKLAYVSFESGKPEIYVQDLATG-----QRE-KVAS------- 231 (417)
T ss_pred eEEEEcCCCC---CCEEeecCCCceecccCCCC---CCEEEEEEcCCCCcEEEEEECCCC-----CEE-Eeec-------
Confidence 6888888643 33444445556888899999 7778877654 36999998762 111 1011
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
+...+.+++|+|+++.++++...++ .|++||+.... ...+..+........
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---------------------------~~~l~~~~~~~~~~~ 284 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---------------------------LTRLTNGPGIDTEPS 284 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---------------------------EEECCCCCCCCCCEE
Confidence 2345667899999984555555555 48888876521 111111223344678
Q ss_pred ECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~ 380 (548)
|+||++.|+..+.. + .|.++|+.+++.. .+..+...+....|+|+|++|+....++ .|.+||+.++.... +.
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~ 362 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT 362 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc
Confidence 99999988876643 3 5778888776643 3333455677889999999999888776 89999998765432 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEECC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLE 426 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg---~i~lwd~~ 426 (548)
.. .......|+| || ..|+....++ .+.+.+..
T Consensus 363 ~~-~~~~~p~~sp-------dg------~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 363 DT-GLDESPSFAP-------NG------RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEeCCCcEEEEEEECC
Confidence 22 2234568898 88 4565555443 45555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=111.75 Aligned_cols=231 Identities=18% Similarity=0.239 Sum_probs=135.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.|++.|.+... .+.+.........-+|+|+++.-.++++...+| +|++.++... ..+.+.. .
T Consensus 166 ~l~~~d~dG~~---~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~----------~ 229 (428)
T PRK01029 166 ELWSVDYDGQN---LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILA----------L 229 (428)
T ss_pred eEEEEcCCCCC---ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeec----------C
Confidence 57777777644 233443555667779999943211333555554 4777787652 1122211 1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCC--cEEE--EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADG--NLYV--YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg--~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.......+|+|||+.++++...+| .+++ |++..... ..+......+.+.....
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~-----------------------g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI-----------------------GKPRRLLNEAFGTQGNP 286 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC-----------------------CcceEeecCCCCCcCCe
Confidence 334456899999984555554444 3333 55543110 01111111112334568
Q ss_pred EECCCCCEEEEEE-CCCeEEEE--eCCC-CeEEEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEe
Q 008939 306 AFSTDGTYLATVG-RDGYLRVF--DYSK-EQLICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAW 378 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vw--d~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~ 378 (548)
+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence 9999999888766 46655555 4432 22233343344567788999999988876543 4799999998876543
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeC--CCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQ--DTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~--Dg~i~lwd~~~~~~~~~~~ 435 (548)
.. ....+....|+| || +.|+. ... +..|.+||+..++......
T Consensus 367 t~-~~~~~~~p~wSp-------DG------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 367 TT-SPENKESPSWAI-------DS------LHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred cC-CCCCccceEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 33 344567889999 98 45543 332 4678999998877654443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-10 Score=102.71 Aligned_cols=210 Identities=15% Similarity=0.187 Sum_probs=145.7
Q ss_pred eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.+.+|++.....-++..+.. ..+.+..+.|.--..++. .|+.+...|+|.++...... .. ....-.....+.
T Consensus 47 kl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~----ss--~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE----SS--VHLRGLSSKKIS 120 (339)
T ss_pred ceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce----ee--eeecccchhhhh
Confidence 56777777644333333322 234556666665444444 67888889999998765411 00 001101111112
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.....++.|++.+. .++++..+|.+.+-+.... ..+.++.|+.|+-.+.-..|+.
T Consensus 121 ~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~------------------------~le~vq~wk~He~E~Wta~f~~ 175 (339)
T KOG0280|consen 121 VVEALSLDISTSGT-KIFVSDSRGSISGVYETEM------------------------VLEKVQTWKVHEFEAWTAKFSD 175 (339)
T ss_pred heeeeEEEeeccCc-eEEEEcCCCcEEEEeccee------------------------eeeecccccccceeeeeeeccc
Confidence 33467889999998 7899999999985544321 1234678999999999999986
Q ss_pred -CCCEEEEEECCCeEEEEeCC-CCeEEEe-eeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCC
Q 008939 310 -DGTYLATVGRDGYLRVFDYS-KEQLICG-GKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNS 384 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~ 384 (548)
+.+++++|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+.|..|++||.++ ++++..-. -.+
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G 254 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG 254 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence 56799999999999999998 4455544 567888999998876 466899999999999999995 66665544 458
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
.|+.+.++|
T Consensus 255 GVWRi~~~p 263 (339)
T KOG0280|consen 255 GVWRIKHHP 263 (339)
T ss_pred ceEEEEecc
Confidence 899999998
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-08 Score=96.68 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=147.1
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC-C-----CCc------eEE-EecCCCCCCceEEEEEcCCcEEEEE
Q 008939 138 FDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS-N-----SNP------VCH-AFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 138 ~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~-~-----~~~------~~~-~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+.||+.|++..+..|++||-++. .+.++... + ... ..+ .|++. +|.+++..+ .|+..+.+
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td---~lekldI~lpl~rk~k~~k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETD---SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcC---cceeeecCCccccccccccccCHHHhhhhhccC--CCcEEEEEe-cCcEEEEC
Confidence 357899999998889999998854 34444332 1 111 111 24443 244555444 46776665
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC-cEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
... ...++. .+...|.-..+.-+.+ -++.|..|| .+-|||.+..
T Consensus 348 ~~~------~~~iqv--------~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~-------------------- 392 (668)
T COG4946 348 PWD------GYSIQV--------GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG-------------------- 392 (668)
T ss_pred CCC------CeeEEc--------CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc--------------------
Confidence 433 111111 2567788888888887 789999999 8999999862
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.+.++...-+.|.++..+++|++++.+.....|.+.|+.++.....-+...+-|+.++|+|+++++|-+--+|
T Consensus 393 -------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 393 -------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred -------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 2333344448899999999999999999999999999999988777777788999999999999999876665
Q ss_pred ----eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 364 ----LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 364 ----~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
.|+++|+..++....-. ..+.=.+-+|+|
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~ 498 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP 498 (668)
T ss_pred eeeeeEEEEecCCCeEEEecC-CcccccCcccCC
Confidence 69999999887665433 333344667888
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-09 Score=102.12 Aligned_cols=317 Identities=12% Similarity=0.192 Sum_probs=201.9
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-----EcC-----CcEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-----LNS-----GDVYS 202 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-----~~d-----g~I~i 202 (548)
....+++++|++++++.++.++|++..... .+.... .....++.|+|. +.+|.+- ..+ -.+.+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~--~~~~~~L~fSP~---g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVE--LKKTYDLLFSPK---GNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEec--cceeeeeeeccc---ccccccccccccccCCCCCCCceee
Confidence 567899999999999999999999988743 333333 238899999998 5555432 112 23678
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++++.. ....+. .. ...+ ++..|++|.. |++--..+.+++|++.....
T Consensus 110 ~~vet~~---~~s~~q-----~k--~Q~~--W~~qfs~dEs--l~arlv~nev~f~~~~~f~~----------------- 158 (566)
T KOG2315|consen 110 YNVETGV---QRSQIQ-----KK--MQNG--WVPQFSIDES--LAARLVSNEVQFYDLGSFKT----------------- 158 (566)
T ss_pred eeeccce---ehhhee-----hh--hhcC--cccccccchh--hhhhhhcceEEEEecCCccc-----------------
Confidence 8877611 111000 00 0122 6889999886 55545567899999875211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEE-----EECCCeEEEEeCCCCeEEEe--eee-cCCceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDG--TYLAT-----VGRDGYLRVFDYSKEQLICG--GKS-YYGALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s-----~~~dg~v~vwd~~~~~~~~~--~~~-~~~~v~~l~~spd 352 (548)
+.+ ..|...|..+.+||.+ ..+|+ .+.-..|+||.+.....-.. .+. ....=..+.|.+-
T Consensus 159 --------~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 159 --------IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKL 228 (566)
T ss_pred --------eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccC
Confidence 111 2335779999999863 34443 24456899998863221111 011 1112234678877
Q ss_pred CCE-EEEEe--C---------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeE
Q 008939 353 GKY-ILTGG--E---------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 353 g~~-l~sgs--~---------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i 420 (548)
|.- |+..+ - +..+++.+++...++..+. -.++|.++.|+| +|.+ --++-|-.-.++
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-------s~~E----F~VvyGfMPAkv 296 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-------SGRE----FAVVYGFMPAKV 296 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-------CCCE----EEEEEecccceE
Confidence 762 22222 1 2368888888445555554 689999999999 8721 233444467899
Q ss_pred EEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E
Q 008939 421 LLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V 498 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l 498 (548)
.|+|++. ..+..+.. .+.+.+.|++.+..... .-.|.+.+.+.+||+...+.+..+..-. -+-.+|+||+ +
T Consensus 297 tifnlr~-~~v~df~e-gpRN~~~fnp~g~ii~l---AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 297 TIFNLRG-KPVFDFPE-GPRNTAFFNPHGNIILL---AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYF 369 (566)
T ss_pred EEEcCCC-CEeEeCCC-CCccceEECCCCCEEEE---eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEE
Confidence 9999874 44444443 56677888888732211 1356778999999999998888877543 3558899985 6
Q ss_pred EEEE------CCCeEEEEeCCCCC
Q 008939 499 LTVC------REGHIKIWMRPGVA 516 (548)
Q Consensus 499 ~t~s------~Dg~I~iW~~~~~~ 516 (548)
+|++ .|..++||++.+..
T Consensus 370 lTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEeccccEEecCCeEEEEecCce
Confidence 6665 47899999987765
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-11 Score=123.04 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=142.9
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...++.+..++.+.+||.... ..+...+. ....--....-+-++++.- ++++|+.-+.|.+|+...+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~-----~~~~~i~~---~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~d---- 165 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNS-----SVLSKIQS---DERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHED---- 165 (967)
T ss_pred cceEEEEEcCceEEEEecccC-----ceehhcCC---CceEEEEeEEEEeccCcEE-EEEeccccccEEEEecccc----
Confidence 557889999999999997652 11110000 0000001111122233333 7889999999999998731
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE-eeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~ 346 (548)
..|+ .+.+|++.|..+.|+.||.++++++.|..+|+|++++.+... ..-+|...+..
T Consensus 166 ---------------------n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 166 ---------------------NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred ---------------------CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 1222 678899999999999999999999999999999999988765 67789999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
+.|.|+ .++++++|-+.++|+.+ +..+..+.+|. ..|..++..+ +. ..++|++.|+.+++||+
T Consensus 224 ~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~-------~~------~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPI-------GV------IIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcC-------Cc------eEEEeeccCcchhhhhh
Confidence 999998 89999999999999765 44455777775 5789999987 55 68999999999999998
Q ss_pred CCC
Q 008939 426 EMD 428 (548)
Q Consensus 426 ~~~ 428 (548)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-09 Score=108.82 Aligned_cols=220 Identities=12% Similarity=0.113 Sum_probs=130.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CC--cEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|..... .+.+...+..+.+..|+|+ +..|+..+. ++ +|++||+... +. .....
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPD---G~~La~~s~~~g~~~L~~~dl~tg-----~~-~~lt~------- 259 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPD---GRKLAYVSFENRKAEIFVQDIYTQ-----VR-EKVTS------- 259 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCC---CCEEEEEEecCCCcEEEEEECCCC-----Ce-EEecC-------
Confidence 67777876533 2344456678889999999 667776654 33 5888888652 11 10000
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.........|+|+++.++++...+|. |+++|+.... +..+..+.......+
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------------------------~~~lt~~~~~~~~p~ 312 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------------------------LTRITRHRAIDTEPS 312 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------------------------eEECccCCCCccceE
Confidence 12233468999999955556677776 6666765421 111122224456789
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~ 380 (548)
|+||++.|+..+. ++ .|.++|+.+++.... ..........+|+|||++|+..+.+ + .|.++|+.+++... +.
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt 390 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT 390 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc
Confidence 9999998877654 33 466678877764332 1122233457899999988776553 3 46667888776433 32
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeCCC--eEEEEECCCCeEEeee
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQDT--RLLLWDLEMDEIVVPL 434 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~Dg--~i~lwd~~~~~~~~~~ 434 (548)
.. .......|+| || +.|+. ...++ .|.++|.. +.....+
T Consensus 391 ~~-~~d~~ps~sp-------dG------~~I~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 391 ST-RLDESPSVAP-------NG------TMVIYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred CC-CCCCCceECC-------CC------CEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 22 1222457888 88 44444 43444 36777764 4444444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-10 Score=111.77 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=148.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe------c-------------CCCcEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV------P-------------GGDGAFVV 248 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~------p-------------~~~~~l~s 248 (548)
..+++....||.+++||.... ++... |.+... -.+.+++..|. | .+...++-
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~------~~~~e--~~p~~~-~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKN------QLQQE--FAPIAS-LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred hheEeecCCCCeEEEEEccCc------eeeee--eccchh-ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 568899999999999998762 11111 111110 24566666663 1 12226778
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
|...|.|.+|++..++ ....+ .-..|.+.|+++.++.+-..|.+++.|+.+..|+.
T Consensus 76 gt~~g~v~~ys~~~g~-it~~~-----------------------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~ 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGE-ITAKL-----------------------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE 131 (541)
T ss_pred ecCCccEEEEEecCCe-EEEEE-----------------------ecCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence 8899999999987521 11111 11346789999999998889999999999999999
Q ss_pred CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC--CCccc
Q 008939 329 SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD--GTAET 406 (548)
Q Consensus 329 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d--g~~~~ 406 (548)
...+.++..+.....+.+++.+|||+.|++++ +.|++||+++++.+..|.||.++|+++.|-- + | -.
T Consensus 132 ~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~-------~~~g--~~ 200 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT-------LIDG--II 200 (541)
T ss_pred ccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE-------eccc--cc
Confidence 99999999998888999999999999999987 6899999999999999999999999999976 4 2 11
Q ss_pred eeEEEEEEeCCCeEEEEECCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..+.|.+...+.-+.+|-++.
T Consensus 201 G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceeeeccccccceeEEEEEc
Confidence 125666666777888887654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-09 Score=109.52 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=130.8
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|.++|.+... ...+..+...+....|+|+ +..|+..+.+ ..|++||+.+.. .+.+. .
T Consensus 180 ~l~~~d~~g~~---~~~l~~~~~~~~~p~wSpD---G~~la~~s~~~~~~~l~~~~l~~g~---~~~l~---~------- 240 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQSREPILSPRWSPD---GKRIAYVSFEQKRPRIFVQNLDTGR---REQIT---N------- 240 (430)
T ss_pred EEEEECCCCCC---ceEEecCCCceeeeeECCC---CCEEEEEEcCCCCCEEEEEECCCCC---EEEcc---C-------
Confidence 57788887533 3444445667888999999 6677665543 358999987521 01111 0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
....+....|+|+++.++++...+| .|++||+.... ...+..+........
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------~~~lt~~~~~~~~~~ 293 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------------------------LSRVTNHPAIDTEPF 293 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------eEEcccCCCCcCCeE
Confidence 1233456899999984444565565 57778877521 111111223455678
Q ss_pred ECCCCCEEEEEEC-CC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEecc
Q 008939 307 FSTDGTYLATVGR-DG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 307 ~sp~g~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~ 380 (548)
|+|||+.|+..+. ++ .|.++|+.+++..... ..........|+|||++|+....+ + .|.+||+.+++... +.
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt 371 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT 371 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc
Confidence 9999998877664 33 5777788777643221 112233457899999998876643 2 58889998876433 22
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-C--CeEEEEECCCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-D--TRLLLWDLEMD 428 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-D--g~i~lwd~~~~ 428 (548)
+........|+| || ++++..+. + ..|.++++...
T Consensus 372 -~~~~~~~p~~sp-------dg------~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 372 -DTSLDESPSVAP-------NG------TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred -CCCCCCCceECC-------CC------CEEEEEEecCCceEEEEEECCCC
Confidence 122223568998 88 45554443 3 34677777543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=112.95 Aligned_cols=215 Identities=15% Similarity=0.214 Sum_probs=130.8
Q ss_pred CCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE-EEcCCc--EEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI-GLNSGD--VYS 202 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~-g~~dg~--I~i 202 (548)
...+....|+|||+.|++... . .|++||+.++.. ..+...+......+|+|+ +..|+. ...+|. |++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wSPD---G~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFSPD---GKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeECCC---CCEEEEEEeCCCCeEEEE
Confidence 456678999999999998542 2 699999987542 223222334457899999 665654 556665 777
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+|+.+. ...... .+........|+|+++.++++...++. |+++|+... .
T Consensus 291 ~dl~tg------~~~~lt-------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~--------------- 341 (448)
T PRK04792 291 VDIATK------ALTRIT-------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K--------------- 341 (448)
T ss_pred EECCCC------CeEECc-------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C---------------
Confidence 777651 111111 123345678999999955555555555 444555431 1
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+..+.......+|+|||++|+..+.+ + .|.++|+.+++... +... .......|+|||+.|+
T Consensus 342 -----------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 342 -----------VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred -----------EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence 11111111223356899999998877653 3 45667887776432 2211 1223457999999877
Q ss_pred EEeCC-C--eEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 358 TGGED-D--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 358 sgs~d-g--~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
....+ + .+.+++. +++....+..+.+.+...+|+|
T Consensus 409 ~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 65543 3 3777787 4666666766667777788877
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-08 Score=98.12 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=168.1
Q ss_pred CeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----CCcEEEEEeeecccccccceeeeeeecc
Q 008939 151 DAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----SGDVYSVSLRQQLQDVGKKLVGAHHYNK 224 (548)
Q Consensus 151 d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 224 (548)
+.|++|+++... ...+..+ .....+..++++|+ +.+|++... +|.|..|++.... ..+.......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~---~~~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~~- 83 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPD---GRRLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSVP- 83 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TT---SSEEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEEE-
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeC---CCEEEEEEccccCCCCEEEEEECCCc----ceeEEeeeec-
Confidence 488888884432 1222332 25568899999998 778888877 4689999887520 1111111111
Q ss_pred CCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 225 DGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 225 ~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
........++++|++..++++...+|.|.++++...+............ ... .++. +.-....++
T Consensus 84 ---~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----g~g----~~~~---rq~~~h~H~ 148 (345)
T PF10282_consen 84 ---SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----GSG----PNPD---RQEGPHPHQ 148 (345)
T ss_dssp ---ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----EEE----SSTT---TTSSTCEEE
T ss_pred ---cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----CCC----Cccc---cccccccee
Confidence 1244556899999999444444568999999998754322211100000 000 0000 001245789
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEeCCCCe--EEE--eee-ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECC--Cce-
Q 008939 305 IAFSTDGTYLATVGR-DGYLRVFDYSKEQ--LIC--GGK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSME--DRK- 374 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~-dg~v~vwd~~~~~--~~~--~~~-~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~--~~~- 374 (548)
+.|+|++++|++... ...|.+|++.... +.. .+. .....-+.++|+|+++++++..+ ++.|.++++. ++.
T Consensus 149 v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 999999998887653 3579999997654 322 222 23356788999999998876654 7889999998 332
Q ss_pred -eEEecc----C--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--CeEEeeeecCCCCCCcee
Q 008939 375 -VVAWGE----G--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM--DEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 375 -~~~~~~----~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~ 445 (548)
.+..+. + .......|+++| ||+ .++++...+..|.+|++.. +++. .+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~isp-------dg~-----~lyvsnr~~~sI~vf~~d~~~g~l~-~~~~--------- 286 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISP-------DGR-----FLYVSNRGSNSISVFDLDPATGTLT-LVQT--------- 286 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-T-------TSS-----EEEEEECTTTEEEEEEECTTTTTEE-EEEE---------
T ss_pred eEEEEeeeccccccccCCceeEEEec-------CCC-----EEEEEeccCCEEEEEEEecCCCceE-EEEE---------
Confidence 222222 1 123678999999 983 4566666788999999942 3322 1111
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRPG 514 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~ 514 (548)
........+.++|+|++ |+.+. .++.|.+|++..
T Consensus 287 -----------------------------------~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 287 -----------------------------------VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -----------------------------------EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred -----------------------------------EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 11123346899999974 55554 778999998753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=109.03 Aligned_cols=182 Identities=19% Similarity=0.178 Sum_probs=118.6
Q ss_pred cCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCCC--eEEEEECC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDD--LVQVWSME 371 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~dg--~I~vwd~~ 371 (548)
+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 34568889999999999987654 479999999886543 2335556778999999997764 44443 58899998
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CC--eEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DT--RLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
+++.. .+..+........|+| || ..|+..+. ++ .|.+||+.+++... +.
T Consensus 267 ~~~~~-~l~~~~~~~~~~~~s~-------dg------~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~------------- 318 (417)
T TIGR02800 267 GKQLT-RLTNGPGIDTEPSWSP-------DG------KSIAFTSDRGGSPQIYMMDADGGEVRR-LT------------- 318 (417)
T ss_pred CCCEE-ECCCCCCCCCCEEECC-------CC------CEEEEEECCCCCceEEEEECCCCCEEE-ee-------------
Confidence 77544 3444555556778998 88 56655543 33 57777776554321 11
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCC---eEEEEeCCCCCccccCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQSSSS 523 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg---~I~iW~~~~~~~~~~~~~ 523 (548)
.+...+..+.|+|++ |+.++.++ .|.+||+.++........
T Consensus 319 ----------------------------------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 364 (417)
T TIGR02800 319 ----------------------------------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT 364 (417)
T ss_pred ----------------------------------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC
Confidence 122335567788864 66666665 788888776543322211
Q ss_pred --CcEEEecCCCCceEeeecc
Q 008939 524 --ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 524 --~~v~~~s~d~~~l~s~~~~ 542 (548)
..-.+++||+++|+.....
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCceECCCCCEEEEEEeC
Confidence 1222788999888776554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-09 Score=109.76 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=133.2
Q ss_pred CCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE-EEcCC--cE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI-GLNSG--DV 200 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~-g~~dg--~I 200 (548)
.+...+....|+|||+.|++.+. . .|++||+.++..+ .+...+......+|+|+ +..|+. ...+| .|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---~l~~~~g~~~~~~~SpD---G~~la~~~~~~g~~~I 269 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---QITNFEGLNGAPAWSPD---GSKLAFVLSKDGNPEI 269 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---EccCCCCCcCCeEECCC---CCEEEEEEccCCCceE
Confidence 34566788899999999988542 2 7999999875422 23223334557899998 666664 44455 58
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc--EEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN--LYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||+.+. ....... +........|+|+++.++++...+|. |+++|+.... .
T Consensus 270 y~~d~~~~------~~~~lt~-------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~------------ 323 (430)
T PRK00178 270 YVMDLASR------QLSRVTN-------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A------------ 323 (430)
T ss_pred EEEECCCC------CeEEccc-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E------------
Confidence 88888752 1111110 23345667899999855555545554 6666655321 1
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
..+...........|+|||++|+....+ + .|.+||+.+++...... ........|+|||+.
T Consensus 324 --------------~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~ 387 (430)
T PRK00178 324 --------------ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTM 387 (430)
T ss_pred --------------EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCE
Confidence 0000001123346899999999887653 2 58889998876533222 122235689999998
Q ss_pred EEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 356 ILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 356 l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
|+..+.+ ..|.++++. +.....+..+.+.+...+|+|
T Consensus 388 i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 8776643 357777775 344445555566677777876
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=128.18 Aligned_cols=193 Identities=19% Similarity=0.314 Sum_probs=152.6
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
++.|+.=+|. ..+.++|+.||.|++|.... +..+..... ....+|+.+.|+.+|+ .+..+..||.
T Consensus 2210 ~v~r~~sHp~---~~~Yltgs~dgsv~~~~w~~-----~~~v~~~rt------~g~s~vtr~~f~~qGn-k~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPS---DPYYLTGSQDGSVRMFEWGH-----GQQVVCFRT------AGNSRVTRSRFNHQGN-KFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCC---CceEEecCCCceEEEEeccC-----CCeEEEeec------cCcchhhhhhhcccCC-ceeeeccCCc
Confidence 4455555555 44689999999999998665 334433211 1348899999999999 8999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCC
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKE 331 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~ 331 (548)
+.+|.... ++...|+.|....+.+.|-. ..+++++ .++.+.+||..-.
T Consensus 2275 l~l~q~~p---------------------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2275 LSLWQASP---------------------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred eeecccCC---------------------------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 99999873 56788899999999999865 5677764 4688999997532
Q ss_pred ---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 332 ---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 332 ---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
.++. ..|.+.++++++-|..++|++|+.+|.|++||++..+.++.++. ++. .
T Consensus 2326 ~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~-------~------- 2380 (2439)
T KOG1064|consen 2326 PMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDT-------R------- 2380 (2439)
T ss_pred cccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhh-------h-------
Confidence 2344 78999999999999999999999999999999999988887774 222 2
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+|++++..|.|+||++..-..+..+..
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred heeeccCcccceEEEEccccchhhcCch
Confidence 3799999999999999998877766654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-09 Score=106.67 Aligned_cols=223 Identities=15% Similarity=0.163 Sum_probs=132.9
Q ss_pred CCceeEEeCCCCCE--EEE-ec--CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CC--cEE
Q 008939 131 TSMTNTNFDGKGTY--IIF-NV--GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SG--DVY 201 (548)
Q Consensus 131 ~~v~~~~~~~~g~~--l~~-~~--~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg--~I~ 201 (548)
+....-.|+|||+. +++ +. +. .|++.++.++..+.+..+ +......+|+|+ |+.|+.... +| .++
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPD---G~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPR---KKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCC---CCEEEEEECCCCCccee
Confidence 34456799999975 322 22 23 789999987654444433 334556899999 666766553 33 344
Q ss_pred E--EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 202 S--VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 202 i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+ |++........+.+.. . ........+|+|||+.++++...+|...+|.+......
T Consensus 259 ~~~~~~~~g~~g~~~~lt~------~---~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g------------- 316 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLN------E---AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG------------- 316 (428)
T ss_pred EEEeecccCCCCcceEeec------C---CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-------------
Confidence 4 5554310000011110 0 11234567999999944445556776666654321100
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l 356 (548)
.....+..+...+....|+|||+.|+....+ ..|.+||+.+++.... ......+....|+|||+.|
T Consensus 317 ----------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 317 ----------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ----------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEE
Confidence 0011222223456788999999999877653 4699999998876433 2223456789999999987
Q ss_pred EEEeC---CCeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 357 LTGGE---DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 357 ~sgs~---dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.... ...|.+||+..++...... ..+.+...+|+|
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 75433 3578899998776544433 445566777877
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=107.71 Aligned_cols=197 Identities=18% Similarity=0.251 Sum_probs=147.4
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCC--CeEEEE----ECCCCCEEEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQG--SINSIA----FSTDGTYLAT 316 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~--~v~~~~----~sp~g~~l~s 316 (548)
+||....||.+++|+..+ ++....|.+...-.. .+....|. .... ...++. -+.|-..++-
T Consensus 7 ~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~----------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSG----------TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred eEeecCCCCeEEEEEccC-ceeeeeeccchhccC----------cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 899999999999999987 333333333221110 01111111 0000 011111 1223446888
Q ss_pred EECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecC
Q 008939 317 VGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~ 394 (548)
|...|.|.+|+...+++...+. .|.+.|.++.++.+-..|.+++.|..+..|+..+.+.++.+.+....+..++.+|
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP- 154 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-
Confidence 8899999999999999877665 6889999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~ 474 (548)
|| ..+++++ ++|++||+++++.+..
T Consensus 155 ------D~------~~l~~as--~~ik~~~~~~kevv~~----------------------------------------- 179 (541)
T KOG4547|consen 155 ------DG------KILLTAS--RQIKVLDIETKEVVIT----------------------------------------- 179 (541)
T ss_pred ------CC------CEEEecc--ceEEEEEccCceEEEE-----------------------------------------
Confidence 98 6888877 6899999999887654
Q ss_pred CCceEEeecCCCCeeEEEEeCC-------e-EEEEECCCeEEEEeCCC
Q 008939 475 LSPLVAHRVHTEPLSGLIFTQE-------S-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 475 ~~~~~~~~~h~~~V~~l~fspd-------~-l~t~s~Dg~I~iW~~~~ 514 (548)
+.+|..+|+++.|..+ + |.++..+.-|.+|-+..
T Consensus 180 ------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 ------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 4569999999999875 2 56667888899998765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-08 Score=98.40 Aligned_cols=326 Identities=13% Similarity=0.107 Sum_probs=202.6
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---------
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--------- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--------- 199 (548)
-.-++..++|+|.|.++++.....|.+|.-... ..+..+ ....+..+.|+|. +.+|.+-...+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~--~~l~~~--~~~~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp 103 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK--AKLVRF--RHPDVKYLDFSPN---EKYLVTWSREPIIEPEIEISP 103 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccch--hheeee--ecCCceecccCcc---cceeeeeccCCccChhhccCC
Confidence 355778899999999999988889999998873 344333 3357888999998 777877665543
Q ss_pred ------EEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 200 ------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 200 ------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
+.+||+.. +. ++....... ...-.. -+.|+-++. ++|-- ....++|+++ +..-..
T Consensus 104 ~~~~n~~~vwd~~s-----g~-iv~sf~~~~----q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~~----- 165 (561)
T COG5354 104 FTSKNNVFVWDIAS-----GM-IVFSFNGIS----QPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIEE----- 165 (561)
T ss_pred ccccCceeEEeccC-----ce-eEeeccccC----Ccccccceeeeeecch-hhhhh-ccCeEEEEec-CCcccc-----
Confidence 88888876 22 222111100 111133 677888776 43332 3456899997 321111
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEE-----EECCCeEEEEeCCCCeEEEeeeecCCceE
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLAT-----VGRDGYLRVFDYSKEQLICGGKSYYGALL 345 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 345 (548)
.|.+.++ ...|..+.|+|. +..|++ ...++.+++|.+-.+..+.+..-....=.
T Consensus 166 -----------------~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 166 -----------------HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -----------------Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 1111111 156888899985 344554 35678999999987766554332223334
Q ss_pred EEEEccCCCEEEEEe-----------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 346 CCAWSMDGKYILTGG-----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 346 ~l~~spdg~~l~sgs-----------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
.+.|.+.|++|++-- .+..+.|++++...+.... .-.++|...+|.| .+. .--+++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-------~S~----~F~vi~g 294 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-------LSS----RFAVISG 294 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-------cCC----ceeEEec
Confidence 688999999766421 2346888888854433332 5688999999998 661 0234455
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE-EeecCCCCeeEEEE
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV-AHRVHTEPLSGLIF 493 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~-~~~~h~~~V~~l~f 493 (548)
-.+..+.++|++.. ++..+ .+..-+.+.|++...... ..-.+.+.+.+.+||....-.+. .+.+- ..+-+.|
T Consensus 295 ~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~il---~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~w 367 (561)
T COG5354 295 YMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERYIL---FAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDW 367 (561)
T ss_pred ccccceeecccccc-eEEec-CCcccccccccCcccEEE---EecCCccccceEEeccCCceEEEEEeecC--CceEeec
Confidence 58899999999876 33333 335566677777653111 01234556677788766544433 44332 3355779
Q ss_pred eCCe--EEEE--E----CCCeEEEEeCCCCCc
Q 008939 494 TQES--VLTV--C----REGHIKIWMRPGVAE 517 (548)
Q Consensus 494 spd~--l~t~--s----~Dg~I~iW~~~~~~~ 517 (548)
+||+ +.+. + .|..|+|||+.+...
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 9984 3333 2 578999999987663
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-09 Score=96.36 Aligned_cols=195 Identities=18% Similarity=0.187 Sum_probs=132.8
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---CCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
..|.+++|++......+...+. . .....+..+.|.. ++...++-+..+|.|.+|...... ....+
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q-~--------~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L-- 111 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQ-C--------TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHL-- 111 (339)
T ss_pred eccceEEEeecccccCccceee-e--------ecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeee--
Confidence 4577888988763212111111 1 1356778888864 333367788899999999876421 11111
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEc
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWS 350 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~s 350 (548)
+++...+......-++.|++.+..+++...+|.+.+-+.....+. +..+.|.-.+..+.|+
T Consensus 112 -----------------~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 112 -----------------RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred -----------------cccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc
Confidence 111111111123457889998889999999999996666555443 3788899999999987
Q ss_pred cCC-CEEEEEeCCCeEEEEECCC-ceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC-
Q 008939 351 MDG-KYILTGGEDDLVQVWSMED-RKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE- 426 (548)
Q Consensus 351 pdg-~~l~sgs~dg~I~vwd~~~-~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~- 426 (548)
... +++.+|++|+.+..||++- ++.+.. .+-|...|.+|.-+| +.+ .+|++|+.|-.|++||.+
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~------~~~------~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP------PKP------TYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC------CCC------ceEEEeccccceeeeehhc
Confidence 643 5889999999999999993 344433 446889999998877 144 799999999999999998
Q ss_pred CCeEE
Q 008939 427 MDEIV 431 (548)
Q Consensus 427 ~~~~~ 431 (548)
.++.+
T Consensus 243 m~kPl 247 (339)
T KOG0280|consen 243 MGKPL 247 (339)
T ss_pred ccCcc
Confidence 45544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-10 Score=124.41 Aligned_cols=207 Identities=14% Similarity=0.226 Sum_probs=157.1
Q ss_pred CCcccccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEE
Q 008939 118 SSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 118 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
+++.+++-.-.+-+.+.++.-+|...+-+++++| .+++|....+. +|...+ ..+..++.+.|+.+ |+.+.++.
T Consensus 2196 ~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g~s~vtr~~f~~q---Gnk~~i~d 2270 (2439)
T KOG1064|consen 2196 TSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAGNSRVTRSRFNHQ---GNKFGIVD 2270 (2439)
T ss_pred ecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCC--eEEEeeccCcchhhhhhhccc---CCceeeec
Confidence 3344445555556667777777888888888888 89999887754 554443 34578888999988 88899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.||.+.+|.... +..... ..|.....++.|-. . ++++++ .++++.+||....+.
T Consensus 2271 ~dg~l~l~q~~p------k~~~s~-------qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~------- 2327 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP------KPYTSW-------QCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPM------- 2327 (2439)
T ss_pred cCCceeecccCC------cceecc-------ccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcc-------
Confidence 999999998763 233222 23788888998876 3 566654 578999999875321
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+. ..|.+.++++++-|..++|++|+.+|.|++||++..++++.++. +. .
T Consensus 2328 ----------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~ 2379 (2439)
T KOG1064|consen 2328 ----------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-T 2379 (2439)
T ss_pred ----------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-h
Confidence 11222 67889999999999999999999999999999998888776664 44 5
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
..++++|+..|.|+||++.....++.+.
T Consensus 2380 ~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2380 REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hheeeccCcccceEEEEccccchhhcCc
Confidence 5689999999999999999887776665
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=96.43 Aligned_cols=299 Identities=17% Similarity=0.147 Sum_probs=171.8
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+..++++..+ .|+-+|..+++ .+-............+. ++..+++++.+|.|+.+|.++ ++.+....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~p~v-----~~~~v~v~~~~g~l~ald~~t-----G~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--RLWRVDLDERLSGGVGA-----DGGLVFVGTEKGEVIALDAED-----GKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--EeeeecCCCCcccceEE-----cCCEEEEEcCCCEEEEEECCC-----CcEeeeec
Confidence 3455555554 88888887765 55444433321111222 155788999999999999876 33332211
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. ...+.+.-.. .+. .++.+..+|.|+.||..+ ++....+..... ...+. .
T Consensus 133 ~--------~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----------------~~~~~---~ 182 (377)
T TIGR03300 133 L--------SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAAT-GERLWTYSRVTP----------------ALTLR---G 182 (377)
T ss_pred c--------CceeecCCEE-ECC-EEEEECCCCeEEEEEcCC-CceeeEEccCCC----------------ceeec---C
Confidence 0 1112111111 233 677788899999999876 333222211000 00000 0
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC-------ceEEEEEcc--CCCEEEEEeCCCeEEEEECC
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-------ALLCCAWSM--DGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-------~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~ 371 (548)
. ..... .+..++.+..++.+..+|.++++.+........ .+..+.-+| .+..+++++.++.+..||.+
T Consensus 183 ~-~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 S-ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred C-CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 0 00111 123677788889999999999987755331100 000011111 24577888889999999999
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CC-CCCceecCCC
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PL-GGSPTFSTGS 449 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~-~~~~~~~~~~ 449 (548)
+++.+-... ... ....... ++ .+..++.||.|..+|..+++.+...... .. ...+
T Consensus 260 tG~~~W~~~-~~~-~~~p~~~--------~~-------~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp------ 316 (377)
T TIGR03300 260 SGRVLWKRD-ASS-YQGPAVD--------DN-------RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP------ 316 (377)
T ss_pred CCcEEEeec-cCC-ccCceEe--------CC-------EEEEECCCCeEEEEECCCCcEEEccccccCCccccC------
Confidence 998765544 211 1122222 33 6777788999999999999887655321 11 1111
Q ss_pred CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe-eEEEEeCCeEEEEECCCeEEEE
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL-SGLIFTQESVLTVCREGHIKIW 510 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V-~~l~fspd~l~t~s~Dg~I~iW 510 (548)
...+..+.++..++.+..+|..+++.+..+..+...+ ...++..+.|+.++.||.|..|
T Consensus 317 --~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 317 --AVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred --EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 1123456667777888888888888888777665433 3334555678888888888765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-07 Score=92.52 Aligned_cols=242 Identities=17% Similarity=0.171 Sum_probs=151.8
Q ss_pred eCCCCCEEEEecC-----------CeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEE-c-C
Q 008939 138 FDGKGTYIIFNVG-----------DAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGL-N-S 197 (548)
Q Consensus 138 ~~~~g~~l~~~~~-----------d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~-~-d 197 (548)
++|||+.+..+.. |.|.|||..+.. .+..+...+ ..+..++++|+ +++|++.. . +
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~d---gk~l~V~n~~p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPD---NKTLLFYQFSPS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCC---CCEEEEecCCCC
Confidence 8999998887655 499999999944 888887532 23458899999 77888776 4 6
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
..|.++|+.+ ++++..... .+ +..+--.++.. +.+-+.||......++..+..........+..
T Consensus 128 ~~V~VvD~~~------~kvv~ei~v-------p~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~ 191 (352)
T TIGR02658 128 PAVGVVDLEG------KAFVRMMDV-------PD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE 191 (352)
T ss_pred CEEEEEECCC------CcEEEEEeC-------CC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence 7899999987 344433321 11 11111111111 22334566666655554333110000000000
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCe-----EEEeeee-------cCCce
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQ-----LICGGKS-------YYGAL 344 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~-------~~~~v 344 (548)
..++ ...+ .|.+ +++++.+... |.|.+.|+...+ .+..+.. ..+.+
T Consensus 192 -----------~~~v-----~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 192 -----------DEYL-----INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred -----------cccc-----ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 0000 0122 4455 8877777666 999999965432 2222111 12344
Q ss_pred EEEEEccCCCEEEEEe----------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-EEEE
Q 008939 345 LCCAWSMDGKYILTGG----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGS 413 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s 413 (548)
.-++++|+++.+++.. ..+.|.++|..+++.+..+. -...+..|+++| || + +|.+
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~-------Dg------kp~lyv 316 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQ-------DA------KPLLYA 316 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECC-------CC------CeEEEE
Confidence 5599999999888843 12579999999999998887 345889999999 98 4 5554
Q ss_pred Ee-CCCeEEEEECCCCeEEeeee
Q 008939 414 VG-QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 414 ~~-~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.. .++.|.+.|..+++.+..+.
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeeec
Confidence 44 68889999999999988873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=99.79 Aligned_cols=254 Identities=15% Similarity=0.239 Sum_probs=180.3
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.++.++.+.+.++....-|.. .-++..+.|.++++|--+.. ++..-...+ ....+++++.+.++..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e---~gv~~~s~drtvrv~lkrds----~q~wpsI~~------~mP~~~~~~~y~~e~~- 81 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKE---EGVISVSEDRTVRVWLKRDS----GQYWPSIYH------YMPSPCSAMEYVSESR- 81 (404)
T ss_pred hhhhhcCchhhhhhheeccCC---CCeEEccccceeeeEEeccc----cccCchhhh------hCCCCceEeeeeccce-
Confidence 345555566666666666653 34899999999999965441 111111111 1477899999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
.|++|-..|++.-+.+..+ +.+....+.+..|...+..+-|+-....+++.+.|..+.
T Consensus 82 ~L~vg~~ngtvtefs~sed----------------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~ 139 (404)
T KOG1409|consen 82 RLYVGQDNGTVTEFALSED----------------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA 139 (404)
T ss_pred EEEEEEecceEEEEEhhhh----------------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence 8999999999999987642 234566778888999999999998888999999998776
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC--ceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
-.-.+.+..+..+.- .....++.+.-. +...|...+.|.+..+.. -.++.++.+|...+.+++|.| ..
T Consensus 140 ~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-------~~ 209 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-------GQ 209 (404)
T ss_pred EEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-------CC
Confidence 555555554432221 111112222211 556677777777776644 467889999999999999988 44
Q ss_pred CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee
Q 008939 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR 482 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~ 482 (548)
.+|.++..|..+.+||+.-..-+ ...+.
T Consensus 210 ------~~LfSg~~d~~vi~wdigg~~g~----------------------------------------------~~el~ 237 (404)
T KOG1409|consen 210 ------RLLFSGASDHSVIMWDIGGRKGT----------------------------------------------AYELQ 237 (404)
T ss_pred ------cEEEeccccCceEEEeccCCcce----------------------------------------------eeeec
Confidence 58999999999999998754322 12345
Q ss_pred cCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC
Q 008939 483 VHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 483 ~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~ 516 (548)
+|.+.|..+...+. .|++++.||.|-+|++.-..
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 78888888877664 59999999999999986543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-09 Score=101.58 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=159.8
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-----EcCCcEEEEEeeec
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-----LNSGDVYSVSLRQQ 208 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-----~~dg~I~iwdl~~~ 208 (548)
-+..|+.|..+.+--....+++|++..-. ... -.++...+..+.++|... ...+++= +.-..|+||.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~-~~~--~kl~~~~i~~f~lSpgp~-~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFK-TIQ--HKLSVSGITMLSLSPGPE-PPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcc-cee--eeeeccceeeEEecCCCC-CceEEEEccCCCCCCcEEEEeccccc
Confidence 36889999888888888899999998722 222 333566788888888632 1222221 23345888876621
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----------CcEEEEEcCCCCCCCCCcccccccc
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----------GNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.....+.. ..| .+..=..+.|++-+..+|+.++.| .+++++++..+ .
T Consensus 205 --~~~~~~a~-ksF------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s------------ 262 (566)
T KOG2315|consen 205 --GQHQPVAN-KSF------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-S------------ 262 (566)
T ss_pred --cccchhhh-ccc------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-e------------
Confidence 11111111 111 233335788998887666655432 34666665521 0
Q ss_pred eeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEE--EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC
Q 008939 278 QFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLAT--VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~ 354 (548)
..+.. ..++|+++.|+|+++.+++ |..--.+.|||++ +.++..+. .++-+++-|+|.|+
T Consensus 263 ---------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 263 ---------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGN 324 (566)
T ss_pred ---------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCC
Confidence 01111 1489999999999987765 4566789999997 66666553 57778999999999
Q ss_pred EEEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEEC
Q 008939 355 YILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWDL 425 (548)
Q Consensus 355 ~l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd~ 425 (548)
+|+.++-+ |.|.|||+.+.+++..+..... +-..|+| || .+|+++.. |+.++||++
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-------dG------e~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-------DG------EYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcC-------CC------cEEEEEeccccEEecCCeEEEEe
Confidence 98887764 7899999999999888875443 4578999 99 67777753 788999998
Q ss_pred CCCeEEe
Q 008939 426 EMDEIVV 432 (548)
Q Consensus 426 ~~~~~~~ 432 (548)
. |..+.
T Consensus 390 t-G~~l~ 395 (566)
T KOG2315|consen 390 T-GSLLH 395 (566)
T ss_pred c-Cceee
Confidence 5 44443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-07 Score=107.68 Aligned_cols=263 Identities=14% Similarity=0.152 Sum_probs=158.3
Q ss_pred eeEEeCCC-CCEEEEecCC-eEEEEEccCCCCCCeEEEec--------------CCCCceEEEecCCCCCCceEEEEEc-
Q 008939 134 TNTNFDGK-GTYIIFNVGD-AIFISDLNSQDKDPIKSIHF--------------SNSNPVCHAFDQDAKDGHDLLIGLN- 196 (548)
Q Consensus 134 ~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~--------------~~~~~~~~~~~p~~~~~~~l~~g~~- 196 (548)
..++++++ +.+.++..++ .|++||.... .+..+-. .-..+..++++++ ++.|+++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~---gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK---KNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC---CCEEEEEeCC
Confidence 45788875 5555565555 8999998642 2222221 0125789999987 666666655
Q ss_pred CCcEEEEEeeecccccccceeeeee--eccCCc----c-cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHH--YNKDGS----V-NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~--~~~~~~----~-~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
++.|+++|+.+.. ...+..... ....+. . .-....+++|+|++..++++...++.|++||...... ..
T Consensus 645 n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~ 719 (1057)
T PLN02919 645 NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RV 719 (1057)
T ss_pred CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EE
Confidence 4668889876521 000100000 000000 0 0123468999996554777777889999999865211 00
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCeEEEEeCCCCeEEEeeee---------
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGYLRVFDYSKEQLICGGKS--------- 339 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~v~vwd~~~~~~~~~~~~--------- 339 (548)
+. .+...... .... .....-.....++|+|+++.|+ +-..++.|++||+.++.......+
T Consensus 720 ~~--G~G~~~~~-------~g~~-~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 720 FS--GDGYERNL-------NGSS-GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred Ee--cCCccccC-------CCCc-cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 00 00000000 0000 0000113467899999988555 445678999999987653211100
Q ss_pred ------------cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-------------CCCCCeEEEEEecC
Q 008939 340 ------------YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-------------GHNSWVSGVAFDSY 394 (548)
Q Consensus 340 ------------~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-------------~h~~~V~~v~~~p~ 394 (548)
.......++++++|+++++-..++.|++||..++....... +.-.....|++++
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~- 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE- 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-
Confidence 01124588999999988888899999999998876543221 1123567899998
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+| +++++-+.++.|++||+.+++.
T Consensus 869 ------dG------~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 ------NG------RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ------CC------CEEEEECCCCEEEEEECCCCcc
Confidence 88 6888888999999999998865
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-08 Score=94.85 Aligned_cols=235 Identities=15% Similarity=0.243 Sum_probs=145.6
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee-------eeccCCcccCcceEEEEEecCCC-c
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH-------HYNKDGSVNNSRCTSVTWVPGGD-G 244 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~l~~~p~~~-~ 244 (548)
.+.+.++.|+.. |.+|++|..+|.|.++.-...... ........ .+.+... ....|+.+.|.++++ .
T Consensus 25 adiis~vef~~~---Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSle-ieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHY---GERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLE-IEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeecc---cceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhh-hhhhhhhceecCCCCcc
Confidence 346788888888 889999999999999975542110 00111111 1111111 357899999998775 3
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccc-----eeeee----cCCCCCCCCeeEe-eecCCCeEEEEECCCCCEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT-----QFSVA----HPRYSKSNPIARW-HICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l 314 (548)
.|+....|.+|++|.+...+.....+....... .+.+. +.......|.+.+ ..|..-|+++.++.|+..+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 678888999999999865333221111100000 00000 0000011122222 4578889999999999988
Q ss_pred EEEECCCeEEEEeCCCCeE---EEeeeec-----CCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeE----E----
Q 008939 315 ATVGRDGYLRVFDYSKEQL---ICGGKSY-----YGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVV----A---- 377 (548)
Q Consensus 315 ~s~~~dg~v~vwd~~~~~~---~~~~~~~-----~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~----~---- 377 (548)
+++ .|=.|.+|+++--.. +..++.+ ..-|++..|+|.. +.++-.+..|.|++.||+...+- .
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 887 467899999973321 2233333 2357888999964 46777788999999999853211 1
Q ss_pred --------eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 378 --------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 378 --------~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.+..--..|+.+.|++ +| ++|++-.. -+|++||+.+
T Consensus 259 pedp~~rsffseiIsSISDvKFs~-------sG------ryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSH-------SG------RYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEcc-------CC------cEEEEecc-ceeEEEeccc
Confidence 1112235788999998 88 67776432 6899999964
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-07 Score=83.98 Aligned_cols=268 Identities=14% Similarity=0.211 Sum_probs=166.8
Q ss_pred ccccccCCCCCCceeEEeCCCCCEEEEecC---C-eEEEEEccC--CCCCCeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 121 IGSLGASSSSTSMTNTNFDGKGTYIIFNVG---D-AIFISDLNS--QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 121 ~~~~~~~~h~~~v~~~~~~~~g~~l~~~~~---d-~v~vwd~~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
+..+......+.++.++|+++++.|.+... + .|--|.++. +....+.........++.++++++ +++|+++
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~---g~~vf~A 106 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED---GRFVFVA 106 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC---CCEEEEE
Confidence 334444556677889999999988776432 2 555555553 443445555555566789999998 7788877
Q ss_pred Ec-CCcEEEEEeeecccccccceeeeeeeccCCccc----CcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCC
Q 008939 195 LN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN----NSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 195 ~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~ 268 (548)
.. .|.|.++-+... .....++.... ......| ..-+....+.|+++ +|++.+ .-..|.+|++.. +....
T Consensus 107 nY~~g~v~v~p~~~d--G~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~d-g~L~~ 181 (346)
T COG2706 107 NYHSGSVSVYPLQAD--GSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDD-GKLTP 181 (346)
T ss_pred EccCceEEEEEcccC--Cccccceeeee-cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEccc-Ccccc
Confidence 65 578999988652 11111211111 0000011 12288899999999 666554 445899999983 44322
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCC-eEEEeeee-------
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKE-QLICGGKS------- 339 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~-~~~~~~~~------- 339 (548)
..+..- ......+.|.|+|++++.+... .+++|.+|.+... ..+..++.
T Consensus 182 ~~~~~v----------------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 182 ADPAEV----------------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred cccccc----------------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 211100 1125678899999999877665 5889999999763 11222221
Q ss_pred --cCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc--e--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 340 --YYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR--K--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 340 --~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~--~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...+.-.|..++||++|.++.. ...|.+|.+... + .+....-+...-+...|+| +| .+|+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-------~g------~~Li 306 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-------SG------RFLI 306 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-------CC------CEEE
Confidence 1346778999999999988765 347888887643 2 2222233445567888888 77 5676
Q ss_pred EEeCC-CeEEEEECC--CCeEE
Q 008939 413 SVGQD-TRLLLWDLE--MDEIV 431 (548)
Q Consensus 413 s~~~D-g~i~lwd~~--~~~~~ 431 (548)
.+.+| ..|.+|.+. +|++.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEE
Confidence 66664 568888654 45443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-07 Score=94.15 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=229.5
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC---------CCceEEEEEcCCcEEEE
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK---------DGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~---------~~~~l~~g~~dg~I~iw 203 (548)
-..+.|++.| +|+++++..|.|-|..+ .+.|..+..|+..|+.+.|.|... ..-+|+++...|.|.+|
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 4467787766 78899999999999887 458999999999999999998532 12356777778999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|..... .... ...+..++.+++|.+.. ..+|++-+....|.+|+..+++. .+.+.
T Consensus 95 d~~~~s------~~~~------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~--------- 152 (1062)
T KOG1912|consen 95 DFVLAS------VINW------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYD--------- 152 (1062)
T ss_pred Eehhhh------hhhh------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccc---------
Confidence 987621 1100 01267788999998743 24788888889999999987432 22211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCC-------CeEEEeeeecCC----------
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSK-------EQLICGGKSYYG---------- 342 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~---------- 342 (548)
.......|+.+.| |.+.+..-+..|.+.+.+.-- ++..+.-..|..
T Consensus 153 ----------------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 153 ----------------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred ----------------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 1124566788888 777788777888887776531 222222222211
Q ss_pred ---------------ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 343 ---------------ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 343 ---------------~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
....++|+|.-+.++-..-...+.|+|++-..++....-..+.+.-+.+-| +++.
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP-------~~~r--- 286 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP-------DPRR--- 286 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc-------CCCc---
Confidence 012346788776666566678899999998888877766666677778877 5521
Q ss_pred eEEEEEEeCCCeEEEEECCC----------------CeEE---eeeecC-------CCCC--C-----------------
Q 008939 408 MYRFGSVGQDTRLLLWDLEM----------------DEIV---VPLRRG-------PLGG--S----------------- 442 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~----------------~~~~---~~~~~~-------~~~~--~----------------- 442 (548)
..|.....||.+.+|--+. ++.+ +.++.. .+.+ .
T Consensus 287 -d~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 287 -DALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred -ceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 2477788899999996543 2111 111110 0000 0
Q ss_pred --------------------------------ceecCCCC---------------------------ccccCCeeeeccc
Q 008939 443 --------------------------------PTFSTGSQ---------------------------SAHWDNVCPVGTL 463 (548)
Q Consensus 443 --------------------------------~~~~~~~~---------------------------~~~~d~~~~~g~~ 463 (548)
...+.++. .....-.+++|+.
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 00011110 0011123477888
Q ss_pred CCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECC----------CeEEEEeCCCCCcc-----ccCCCCcEE
Q 008939 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCRE----------GHIKIWMRPGVAES-----QSSSSETVL 527 (548)
Q Consensus 464 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~D----------g~I~iW~~~~~~~~-----~~~~~~~v~ 527 (548)
.+.+.+.|+-+......+..|...|.++.|.-.. |++.+.. ..+.+-|++++... +...+..+.
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 8889999998888888888999999999998763 6555432 45667788876632 223333443
Q ss_pred --EecCCCCceEeee
Q 008939 528 --STSSKDKPLLSSK 540 (548)
Q Consensus 528 --~~s~d~~~l~s~~ 540 (548)
..|..++||+...
T Consensus 526 ~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILF 540 (1062)
T ss_pred eeeecccCceEEEEe
Confidence 6788899987654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-06 Score=82.68 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=148.1
Q ss_pred CCeEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeecccccccceeeeeeeccC
Q 008939 150 GDAIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 150 ~d~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
++.|++|++++... .....+.....+++.++|+|+ .+.|.++-.+ |.|..|.++.. .++ +....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~---~~~LY~v~~~~~~ggvaay~iD~~---~G~-Lt~ln~---- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD---QRHLYVVNEPGEEGGVAAYRIDPD---DGR-LTFLNR---- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC---CCEEEEEEecCCcCcEEEEEEcCC---CCe-EEEeec----
Confidence 45899999985431 122233346779999999999 7678877665 56777776641 111 111111
Q ss_pred CcccCcceEEEEEecCCCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
......+.+.++++++++ +++++ ...|.|.++-++.++.............. .|- -+....-+..
T Consensus 84 ~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------~p~--~rQ~~~h~H~ 149 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------GPH--ERQESPHVHS 149 (346)
T ss_pred cccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------CCC--ccccCCccce
Confidence 111233448899999999 55554 46789999999876654433222111000 000 0000122788
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc-eeEEe
Q 008939 305 IAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR-KVVAW 378 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~-~~~~~ 378 (548)
..|.|++++|++... --.|.+|++..+++...-. .....-+-|.|+|++++..+-.+ +++|.+|..+.. ..+..
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 999999999998752 2369999999876532211 23345788999999998777665 899999998773 22222
Q ss_pred cc---------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC
Q 008939 379 GE---------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM 427 (548)
Q Consensus 379 ~~---------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~ 427 (548)
++ .-..+...|..+| || +.|.++- ....|-+|.+..
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~-------dG------rFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISP-------DG------RFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred eeeeccCccccCCCCceeEEEECC-------CC------CEEEEecCCCCeEEEEEEcC
Confidence 22 1245778899999 99 4444443 234666666543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-07 Score=101.22 Aligned_cols=265 Identities=20% Similarity=0.296 Sum_probs=158.3
Q ss_pred CCceeEEeCCCCCEEEEecCC--e---EEEEEccCCC-CCCeEEEe-----cCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD--A---IFISDLNSQD-KDPIKSIH-----FSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d--~---v~vwd~~~~~-~~~i~~~~-----~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
..+...+|++....+.+..+. . +.+....... ...+..+. ...+.+..+.|-++ ...|+++..+|.
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d---~~~l~~~~~~Gd 98 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLAD---SESLCIALASGD 98 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccC---CCcEEEEECCce
Confidence 345567777766555443332 2 2333322211 11222222 23457889999988 667999999999
Q ss_pred EEEE----EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc--c
Q 008939 200 VYSV----SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV--I 273 (548)
Q Consensus 200 I~iw----dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~ 273 (548)
|.++ +.... .-.++.. ....|.+++|+||++ +|+....+++|.+.+.+-+.-....+.. .
T Consensus 99 i~~~~~~~~~~~~----~~E~VG~---------vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 99 IILVREDPDPDED----EIEIVGS---------VDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEEEEccCCCCCc----eeEEEEE---------EcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9999 43331 1112221 467899999999999 8999998999988764331111111110 1
Q ss_pred cccceeeeecCC--------CCC------CCCe------eEeeecCCCeEEEEECCCCCEEEEEEC---C---CeEEEEe
Q 008939 274 KDQTQFSVAHPR--------YSK------SNPI------ARWHICQGSINSIAFSTDGTYLATVGR---D---GYLRVFD 327 (548)
Q Consensus 274 ~~~~~~~~~~~~--------~~~------~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~---d---g~v~vwd 327 (548)
+......++.++ ..| ..|. ..+. +...-..++|-.||+++|+.+. + ..+|||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 111122222111 111 1111 1122 3456668999999999998774 2 5799998
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCC
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
-+ |++...-..-.+--.+++|.|.|++||+.-. ...|.+|.- +|-. ...+......|..+.|++
T Consensus 244 Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~------- 314 (928)
T PF04762_consen 244 RE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNS------- 314 (928)
T ss_pred CC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECC-------
Confidence 76 7665554444444457899999999988764 345666643 3322 222224567899999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|+ ..|+..-.|. |.+|-...-.
T Consensus 315 ds------~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 315 DS------EILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CC------CEEEEEecCC-ceEEEeeCCE
Confidence 88 5777766555 9999887654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-07 Score=101.57 Aligned_cols=326 Identities=16% Similarity=0.227 Sum_probs=185.6
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEE----EccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFIS----DLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vw----d~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
....|..+.|-++...++....+ .|.+. +... ..+..+-.-...+.|++|+|| ...|++.+.+++|.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---~~~E~VG~vd~GI~a~~WSPD---~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---DEIEIVGSVDSGILAASWSPD---EELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---ceeEEEEEEcCcEEEEEECCC---cCEEEEEeCCCEEEEE
Confidence 45678889998888766665443 55555 3333 344444445679999999999 7899999999998876
Q ss_pred Eeee------cc--cccc----------cceeeee----ee----ccC--------Ccc-cCcceEEEEEecCCCcEEEE
Q 008939 204 SLRQ------QL--QDVG----------KKLVGAH----HY----NKD--------GSV-NNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 204 dl~~------~~--~~~~----------~~~~~~~----~~----~~~--------~~~-~~~~v~~l~~~p~~~~~l~s 248 (548)
+-.= .+ .+.+ ++-.+.. +. .++ +.. ..+.-..|+|-.||. +||+
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~-yFAV 226 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE-YFAV 226 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc-EEEE
Confidence 4221 00 0000 1100000 00 000 000 233567899999999 8888
Q ss_pred EeC---C---CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---
Q 008939 249 GHA---D---GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR--- 319 (548)
Q Consensus 249 ~~~---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~--- 319 (548)
.+. . ..++||+-+ +.......+. .+--.+++|.|.|++||+.-.
T Consensus 227 ss~~~~~~~~R~iRVy~Re--G~L~stSE~v-------------------------~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE--GELQSTSEPV-------------------------DGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred EEEEcCCCceeEEEEECCC--ceEEeccccC-------------------------CCccCCccCCCCCCEEEEEEEcCC
Confidence 764 3 478899865 3222221111 133446899999999998764
Q ss_pred CCeEEEEeCCCCeEEE----eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEeccC-CCCCeEEEEEe
Q 008939 320 DGYLRVFDYSKEQLIC----GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWGEG-HNSWVSGVAFD 392 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~~~-h~~~V~~v~~~ 392 (548)
...|.+|.-+ |..-. .+......|..+.|++|+..||.--.|. |.+|-+.+..- .+.+.- ....+..+.|+
T Consensus 280 ~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd 357 (928)
T PF04762_consen 280 RHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD 357 (928)
T ss_pred CcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence 3456666543 32222 2223456799999999999999977665 99999988652 233331 23345559999
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeec
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~ 472 (548)
| ... ..|.....++.+..+++.-......... +.........+|. .+.+-.+. .-.+
T Consensus 358 p-------e~p-----~~L~v~t~~g~~~~~~~~~~v~~s~~~~-~~D~g~vaVIDG~------~lllTpf~----~a~V 414 (928)
T PF04762_consen 358 P-------EKP-----LRLHVLTSNGQYEIYDFAWDVSRSPGSS-PNDNGTVAVIDGN------KLLLTPFR----RAVV 414 (928)
T ss_pred C-------CCC-----CEEEEEecCCcEEEEEEEEEEEecCCCC-ccCceEEEEEeCC------eEEEeccc----ccCC
Confidence 8 321 4566666667776666543222111110 1111222222221 00000000 0001
Q ss_pred CCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 473 PKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 473 ~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
|..=....+. -..+|.+++|+++. ++.-..||.|.+|..+.
T Consensus 415 PPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 415 PPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1000011221 35789999999975 99999999999999544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-07 Score=92.26 Aligned_cols=292 Identities=15% Similarity=0.083 Sum_probs=168.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++++.+|.|+.+|..+ ++.+..... . ......... ++. .+++++.+|.++.+|..+ ++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~t-----G~~~W~~~~-~------~~~~~~p~v--~~~-~v~v~~~~g~l~ald~~t-G~~~ 128 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAET-----GKRLWRVDL-D------ERLSGGVGA--DGG-LVFVGTEKGEVIALDAED-GKEL 128 (377)
T ss_pred CCEEEEECCCCeEEEEEccC-----CcEeeeecC-C------CCcccceEE--cCC-EEEEEcCCCEEEEEECCC-CcEe
Confidence 55789999999999999776 333322111 0 100111222 344 688888999999999876 3322
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce-
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL- 344 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v- 344 (548)
...... +.+. -+| .+..++.+..++.|..||.++++.+..+......+
T Consensus 129 W~~~~~--------------------------~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 129 WRAKLS--------------------------SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT 179 (377)
T ss_pred eeeccC--------------------------ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee
Confidence 221110 1111 111 24567777889999999999999887765432211
Q ss_pred ----EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-C---CCeEEE-EEecCCCCCCC-CCCccceeEEEEEE
Q 008939 345 ----LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-N---SWVSGV-AFDSYWSQPNS-DGTAETVMYRFGSV 414 (548)
Q Consensus 345 ----~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~---~~V~~v-~~~p~~~~~~~-dg~~~~~~~~l~s~ 414 (548)
.+.... + ..++.+..++.+..+|.++++.+-..... . ..+..+ .+. +.|.- ++ .+..+
T Consensus 180 ~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~---~~p~~~~~-------~vy~~ 247 (377)
T TIGR03300 180 LRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD---GDPVVDGG-------QVYAV 247 (377)
T ss_pred ecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccC---CccEEECC-------EEEEE
Confidence 111111 3 46788888999999999999766443211 0 000000 000 00100 33 57778
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec-CCCCeeEEEE
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIF 493 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~f 493 (548)
+.++.+..||.++++.+...... .... ....+..+.++..++.+..+|..+.+.+..... ..........
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~-~~~~--------p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDAS-SYQG--------PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccC-CccC--------ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 88999999999999887765531 1111 112345556666677788888877776655422 1122233334
Q ss_pred eCCeEEEEECCCeEEEEeCCCCCccc-cC-CCCcEE-E-ecCCCCceEeeecccccc
Q 008939 494 TQESVLTVCREGHIKIWMRPGVAESQ-SS-SSETVL-S-TSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 494 spd~l~t~s~Dg~I~iW~~~~~~~~~-~~-~~~~v~-~-~s~d~~~l~s~~~~g~~~ 546 (548)
..+.|++++.||.|.+||..+++..- .. +...+. . ...++ .|..++..|.+|
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~ 374 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLY 374 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEE
Confidence 45679999999999999987766322 22 121222 1 12333 477777777665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-08 Score=91.73 Aligned_cols=266 Identities=12% Similarity=0.136 Sum_probs=167.3
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC---CCeEEEecC------------CCCceEEEecCCCCCCceEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK---DPIKSIHFS------------NSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~------------~~~~~~~~~~p~~~~~~~l~~ 193 (548)
..-+.++.|+..|.+|+++..+ .|-++.-....+ .....++.| ...+..+.|.++.. ...++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n-~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN-LAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC-ccEEEE
Confidence 3456789999999999998776 777775433211 011111111 13567778887743 667888
Q ss_pred EEcCCcEEEEEeeecccccc-----------------cceeee-------eeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 194 GLNSGDVYSVSLRQQLQDVG-----------------KKLVGA-------HHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~-----------------~~~~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+.|.+|++|.+........ .+++.. .....-...|.--|++|.++.|.+ .++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec
Confidence 99999999999876311110 000000 000001224888899999999998 55554
Q ss_pred eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeC
Q 008939 250 HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 250 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~ 328 (548)
.|-.|.+|++....+. |.+..-+..+. ..-+.-|++..|+| .-+.++..+..|+|++.|+
T Consensus 183 -DdLRINLWnlei~d~s------------FnIVDIKP~nm------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQS------------FNIVDIKPANM------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred -cceeeeeccccccCCc------------eeEEEccccCH------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 5789999999752211 11100000000 00124588899999 4568888899999999999
Q ss_pred CCCeEE------Ee----------eeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-CCceeEEeccCCC--------
Q 008939 329 SKEQLI------CG----------GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-EDRKVVAWGEGHN-------- 383 (548)
Q Consensus 329 ~~~~~~------~~----------~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-~~~~~~~~~~~h~-------- 383 (548)
+...+- .. +..--..|..+.|+++|+++++-. =-+|++||+ ...+++.+++-|.
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 843211 00 011123578899999999998763 258999999 4556777666553
Q ss_pred ----CCe---EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 384 ----SWV---SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 384 ----~~V---~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
..| ..++|+- ++ .+++||+.....+++++..|..
T Consensus 323 lYEnD~IfdKFec~~sg-------~~------~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSG-------ND------SYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HhhccchhheeEEEEcC-------Cc------ceEecccccceEEEecCCCCcc
Confidence 222 2456654 55 6899999999999999776643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=99.91 Aligned_cols=166 Identities=18% Similarity=0.200 Sum_probs=115.1
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.+..+..+|.++ +|+++..+....+++++...+.. +.+..... ....+++.|..+.
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~----------------------kl~~~~~v-~~~~~ai~~~~~~ 119 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGA----------------------KLLDVSCV-PKRPTAISFIRED 119 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCcc----------------------eeeeEeec-ccCcceeeeeecc
Confidence 344556677777 89998888888888887532200 00101000 0223344444444
Q ss_pred CEEEEE---ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCCCCeE
Q 008939 312 TYLATV---GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNSWVS 387 (548)
Q Consensus 312 ~~l~s~---~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~~~V~ 387 (548)
..+..+ +....+.+|....+.+. .+-+|-..++.++|+||+++|+++..|..|++-....-..+..+ .||+..|.
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 444443 34445556665554443 34579999999999999999999999999999887765555544 47999999
Q ss_pred EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 388 ~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.++.-+ + +.|++++.|++|++||+++++++.++..
T Consensus 199 ~isl~~--------~------~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 199 TISLTD--------N------YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeecc--------C------ceeeecCCCCcEEEEecccCCcccccch
Confidence 999975 3 5799999999999999999999877654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-06 Score=98.44 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=158.0
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc----CCc---ccCcceEEEEEecCCCcEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK----DGS---VNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~----~~~---~~~~~v~~l~~~p~~~~~l 246 (548)
..+..+++++. ++..+++-..++.|++||.... .+........ ++. ..-.....|++.+++. .|
T Consensus 568 ~~P~gvavd~~--~g~lyVaDs~n~rI~v~d~~G~------~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~L 638 (1057)
T PLN02919 568 KFPGKLAIDLL--NNRLFISDSNHNRIVVTDLDGN------FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LL 638 (1057)
T ss_pred CCCceEEEECC--CCeEEEEECCCCeEEEEeCCCC------EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EE
Confidence 34556788875 2445555566778999997642 1111100000 000 1223468899999887 55
Q ss_pred EEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEE
Q 008939 247 VVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLR 324 (548)
Q Consensus 247 ~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~ 324 (548)
+++. ....|+++|+.... ...+.... ......... ....... -.....++|+| ++.++++...++.|+
T Consensus 639 YVaDt~n~~Ir~id~~~~~--V~tlag~G-~~g~~~~gg---~~~~~~~----ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 639 YVADTENHALREIDFVNET--VRTLAGNG-TKGSDYQGG---KKGTSQV----LNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEEeCCCceEEEEecCCCE--EEEEeccC-cccCCCCCC---hhhhHhh----cCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 5554 45679999876421 00000000 000000000 0000000 02345799999 566667777889999
Q ss_pred EEeCCCCeEEEeeee---------------cCCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEEec---------
Q 008939 325 VFDYSKEQLICGGKS---------------YYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAWG--------- 379 (548)
Q Consensus 325 vwd~~~~~~~~~~~~---------------~~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~~~--------- 379 (548)
+||..++.... +.+ .......++++|+++. +++-+.++.|++||++++......
T Consensus 709 v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 709 EYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 99998775431 111 1123467999999984 455566799999999876532111
Q ss_pred ----cCC--------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 380 ----EGH--------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 380 ----~~h--------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
-.+ -..-.+++|++ +| .++++-..++.|++||..++.+......... .+ .
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~-------dG------~LYVADs~N~rIrviD~~tg~v~tiaG~G~~----G~-~ 849 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAK-------DG------QIYVADSYNHKIKKLDPATKRVTTLAGTGKA----GF-K 849 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeC-------CC------cEEEEECCCCEEEEEECCCCeEEEEeccCCc----CC-C
Confidence 000 11235788888 88 6888888999999999988776543221000 00 0
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++ . ...++-.....|++++++ +++-+.++.|++||+.++.
T Consensus 850 dG--------------------------~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DG--------------------------K---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CC--------------------------c---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 00 0 011223456789999974 7777889999999998765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=105.13 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=167.7
Q ss_pred ceeEEeCCC--CCE-EEEecCCeEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 133 MTNTNFDGK--GTY-IIFNVGDAIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 133 v~~~~~~~~--g~~-l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
+....|++. -.+ ++..+...-.||++.....+.|.-+ ..|...++.+-|+|..++ .|++++.|-.|..||++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCC
Confidence 334555543 333 4444444778999987665666544 457778999999998544 8999999999999999872
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...+..... -...-..++|+-...+.++ .+....|++||++.+
T Consensus 148 ----~~p~ys~~~-------w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g------------------------- 190 (1081)
T KOG0309|consen 148 ----HRPFYSTSS-------WRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG------------------------- 190 (1081)
T ss_pred ----Ccceeeeec-------ccccCceeeecccCcchhh-hccCCceEEEeccCC-------------------------
Confidence 222222111 2455678999988874554 445578999999985
Q ss_pred CCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEE--EeCCCe
Q 008939 289 SNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILT--GGEDDL 364 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s--gs~dg~ 364 (548)
..|+..++.|...|+.++|.. ....+.+.+.|++|+.||.+....... ......+|..-.+-|-|+-.++ --.+..
T Consensus 191 s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~ 270 (1081)
T KOG0309|consen 191 STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM 270 (1081)
T ss_pred CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee
Confidence 356677777888999999976 445788999999999999975432111 1123345666666675542222 112224
Q ss_pred EEEEE---------CCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 365 VQVWS---------MED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 365 I~vwd---------~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+++ ..+ .++++.|.||.+.|....|... -..+|........|++-+.|..+++|-+..
T Consensus 271 v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r---~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 271 VPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR---KECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc---ccccCCCCccceeEEEeecCCceEeeeccH
Confidence 44443 333 3689999999998877766431 111333334447899999999999998753
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-06 Score=77.54 Aligned_cols=249 Identities=14% Similarity=0.106 Sum_probs=145.0
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
++.+.+|+++|.--+..|.|...++.=...+.+.....+ +=.-++|+|+ +.+|+.+...|+|+++|+...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD---~tlLa~a~S~G~i~vfdl~g~---- 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD---CTLLAYAESTGTIRVFDLMGS---- 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC---CcEEEEEcCCCeEEEEecccc----
Confidence 456789999998777788888776543234555554333 3478999999 889999999999999998752
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCC-----CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGG-----DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~-----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.+............-...|..|.|.+.. ...|++-..+|.++-|-+...... .+ .
T Consensus 76 --~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q--~y---~------------- 135 (282)
T PF15492_consen 76 --ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ--GY---Q------------- 135 (282)
T ss_pred --eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC--cc---e-------------
Confidence 1111000000011135677788786543 125666777788887776321100 00 0
Q ss_pred CCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE---ccCCCEEEEEeCCC
Q 008939 288 KSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW---SMDGKYILTGGEDD 363 (548)
Q Consensus 288 ~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~---spdg~~l~sgs~dg 363 (548)
.+-...+.. +...|.++.|+|..++|++|+.... +++. -++....+++-.. .|.-+. ++..+|+
T Consensus 136 -e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~ 203 (282)
T PF15492_consen 136 -ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDD 203 (282)
T ss_pred -eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE-ccccCcc
Confidence 011111222 3578999999999888888764322 1000 0011112222222 122211 2222222
Q ss_pred e------EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 L------VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~------I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. -.+|.+-+.+...........|..|..+| || ..|++...+|.|.+|++..-.+......
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-------dg------~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-------DG------SLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECC-------CC------CEEEEEEcCCeEEEEecCcchhhcccch
Confidence 2 13333333222222223567899999999 99 7999999999999999998776666554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-07 Score=82.11 Aligned_cols=228 Identities=14% Similarity=0.030 Sum_probs=142.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC--CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK--DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~--~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.+-+|++-...+ .+..+. ..+.|-|..- ...+|+.|+..|+..+|.+.+. +...+ .. -. +
T Consensus 53 sv~i~~~y~N~~-~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn--~~h~~-~c-d~-------s 114 (344)
T KOG4532|consen 53 SVPINSHYSNPK-GIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN--DGHLY-QC-DV-------S 114 (344)
T ss_pred eeEeccccCCch-hhEEee------ecccccchHhhccccEEEeccccceeeeecccCc--cccee-ee-cc-------c
Confidence 677888775432 222222 2334444321 1447999999999999998752 11001 00 00 1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC--CCeEEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ--GSINSIAF 307 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~ 307 (548)
...|+-+.=..+....+..++.|.++++.+++.+.. ....|. -.+.++++
T Consensus 115 nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----------------------------~~~~h~~~~~~ns~~~ 166 (344)
T KOG4532|consen 115 NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----------------------------KFAVHNQNLTQNSLHY 166 (344)
T ss_pred ccchhhhhhhcccccceeeccCCcceeEEEEecCcc----------------------------cceeeccccceeeeEE
Confidence 111111111112222467788888888888874211 011121 23788999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCC-e-EEE-eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE-Ee----c
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKE-Q-LIC-GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AW----G 379 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~-~-~~~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~-~~----~ 379 (548)
++|++++++.+....|..|.+... + .+. ......+.-.+..|+.....+|++..||.+.|||++..... .+ -
T Consensus 167 snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr 246 (344)
T KOG4532|consen 167 SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR 246 (344)
T ss_pred cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC
Confidence 999999999999999999998643 2 222 22334455668899999999999999999999999875322 21 1
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..|.+.+..+.|+| -|. .-+|.-.-.=+.+.+-|+++....+.+.-
T Consensus 247 p~hnGa~R~c~Fsl-------~g~----lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 247 PHHNGAFRVCRFSL-------YGL----LDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred CCCCCceEEEEecC-------CCc----ceEEEEecCcceEEEEEcccCceeeEEec
Confidence 25899999999998 441 12444444557899999999877665543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7e-07 Score=88.26 Aligned_cols=306 Identities=14% Similarity=0.183 Sum_probs=182.4
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------C-CcEEE
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------S-GDVYS 202 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------d-g~I~i 202 (548)
+.+.|+|.|.||++--...|.+|-=.+ .+.++.+. |+ .+.-+.|+|. ..+|++-+. + ..+.|
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~---EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGES--FDRIQRFY-HP-GVQFIDFSPN---EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCcc--HHHHHhcc-CC-CceeeecCCc---cceEEEecCCccccCcccCCCceEEE
Confidence 578999999999987777999997554 33444433 33 5666777777 445665542 2 35999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++.. .++..... +. ....-.-..|+.|+. ++|.-.. ..|.||+..+-.....
T Consensus 287 WDI~tG~---lkrsF~~~---~~---~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~-------------- 341 (698)
T KOG2314|consen 287 WDIATGL---LKRSFPVI---KS---PYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDK-------------- 341 (698)
T ss_pred EEccccc---hhcceecc---CC---CccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecc--------------
Confidence 9999831 11111111 11 111223468999998 7766555 5788998765211100
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
+++ .-..|..+.|+|.+++||.-... ..+.+..+-+++.+.+.+-+.-.=..+-|-.+|.+|+
T Consensus 342 -------Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 342 -------KSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred -------ccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 001 01678899999998888875422 3567777777777766554443334567888888887
Q ss_pred EEe----------CCCeEEEEECCCcee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEE
Q 008939 358 TGG----------EDDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLW 423 (548)
Q Consensus 358 sgs----------~dg~I~vwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lw 423 (548)
.-- .--.+.|+.++.... +..+. -...|-..+|.| .| ..+++-+. ..++.+|
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP-------~g------dkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEP-------HG------DKFAVISGNTVKNTVSFY 475 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeecc-------CC------CeEEEEEccccccceeEE
Confidence 532 122466777766543 33333 567888999999 77 34444332 2456666
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE--
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-- 499 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-- 499 (548)
.+++... +.+.+..+. ....+.|.|+|.+ ++
T Consensus 476 ~~e~~~~-------------------------------------------~~~lVk~~d--k~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 476 AVETNIK-------------------------------------------KPSLVKELD--KKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred EeecCCC-------------------------------------------chhhhhhhc--ccccceEEEcCCCcEEEEE
Confidence 6553110 011111221 2446789999974 33
Q ss_pred -EEECCCeEEEEeCCCCCccccCCCC----cEEEecCCCCceEeeecc
Q 008939 500 -TVCREGHIKIWMRPGVAESQSSSSE----TVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 500 -t~s~Dg~I~iW~~~~~~~~~~~~~~----~v~~~s~d~~~l~s~~~~ 542 (548)
-+|.-|.+.++|..-.......+.+ .-.-+-|.|+|++++...
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 3346789999998753333332222 222678999999887543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-08 Score=92.06 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=113.7
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
+....+++++++++.+..+ ...++++....+ +.+.... -+..++.+.|..+ ....+++...|.++.+|+-...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~---~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIRE---DTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeec---cceEEEEeecCCceeeeeeccc
Confidence 3456778889999887665 666777765432 2233322 3345566666665 4457778888887777765421
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
....+.+. +|-..+++|+|+||++ .++++..|+.|+|-.....
T Consensus 141 ~~~~~~~l----------GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-------------------------- 183 (390)
T KOG3914|consen 141 SGRCEPIL----------GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-------------------------- 183 (390)
T ss_pred ccCcchhh----------hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc--------------------------
Confidence 11122222 4889999999999998 9999999999999877541
Q ss_pred CCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 290 NPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 290 ~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
..+..|. +|+.-|..++.-++ ..|++++.|++|++||+.+++++.++
T Consensus 184 f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 2233332 47788999988765 46899999999999999999987554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-05 Score=77.89 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=144.4
Q ss_pred CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------CCcEEEEEeeecccccccceeeee
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------SGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.|.|.|..+.+ .+..+... ..+..+ ++|+ +..|+++.. +..|.+||+.+. +....+
T Consensus 27 ~~v~ViD~~~~~--v~g~i~~G-~~P~~~-~spD---g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~------~~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTDGG-FLPNPV-VASD---GSFFAHASTVYSRIARGKRTDYVEVIDPQTH------LPIADI 93 (352)
T ss_pred ceEEEEECCCCE--EEEEEEcc-CCCcee-ECCC---CCEEEEEeccccccccCCCCCEEEEEECccC------cEEeEE
Confidence 589999998843 66667643 345554 9998 666777766 678999999872 222222
Q ss_pred eeccCCc-ccCcceEEEEEecCCCcEEEEEe-C-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 221 HYNKDGS-VNNSRCTSVTWVPGGDGAFVVGH-A-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 221 ~~~~~~~-~~~~~v~~l~~~p~~~~~l~s~~-~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
....+.+ ........++++|+|+ +|++.. . +..|.+.|+.... ... ....
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~k-vv~-------------------------ei~v 146 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKA-FVR-------------------------MMDV 146 (352)
T ss_pred ccCCCchhhccCccceEEECCCCC-EEEEecCCCCCEEEEEECCCCc-EEE-------------------------EEeC
Confidence 2111100 0123345789999999 666555 4 7899999998721 111 1110
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEE-Ee---eeecCCceE-EEEEcc-CCCEEEEEeCCCeEEEEEC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLI-CG---GKSYYGALL-CCAWSM-DGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~-~~---~~~~~~~v~-~l~~sp-dg~~l~sgs~dg~I~vwd~ 370 (548)
. +...-+..+++.. + .-+.||......+.+ ++.. .. +.....++. .-.|.+ +|+++.+..+ |.|.+.|+
T Consensus 147 p-~~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~ 222 (352)
T TIGR02658 147 P-DCYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDL 222 (352)
T ss_pred C-CCcEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEec
Confidence 0 1111111111111 1 112333333332221 1111 11 111000000 003455 8888888776 99999996
Q ss_pred CCc-----eeEEeccC-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEE-Ee---------CCCeEEEEECCCC
Q 008939 371 EDR-----KVVAWGEG-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VG---------QDTRLLLWDLEMD 428 (548)
Q Consensus 371 ~~~-----~~~~~~~~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~---------~Dg~i~lwd~~~~ 428 (548)
... +....+.. ..+.+..++++| || .++.. .. ..+.|.++|..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-------dg------~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 223 SSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-------AR------DRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred CCCcceecceeeeccccccccccCCCcceeEEEcC-------CC------CEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 443 23322221 223444589998 87 34443 21 1257999999988
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE-CC
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC-RE 504 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s-~D 504 (548)
+.+..+.. ...+..|+|+||+ |++.. .+
T Consensus 290 kvi~~i~v------------------------------------------------G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 290 KRLRKIEL------------------------------------------------GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred eEEEEEeC------------------------------------------------CCceeeEEECCCCCeEEEEeCCCC
Confidence 88776654 3467889999973 44444 67
Q ss_pred CeEEEEeCCCCC
Q 008939 505 GHIKIWMRPGVA 516 (548)
Q Consensus 505 g~I~iW~~~~~~ 516 (548)
+.|.+.|..+.+
T Consensus 322 ~~VsViD~~t~k 333 (352)
T TIGR02658 322 KTLYIFDAETGK 333 (352)
T ss_pred CcEEEEECcCCe
Confidence 889999987765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-07 Score=80.06 Aligned_cols=212 Identities=16% Similarity=0.078 Sum_probs=138.7
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
...+|+.++.. .+.+|.+.+.+ .......-+...++-+.=..+. ...+.+++.|.++++++++. +..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~--~~~~~i~sndht~k~~~~~~---~s~~~~~-- 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDL--KFPLNIASNDHTGKTMVVSG---DSNKFAV-- 154 (344)
T ss_pred cccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhccc--ccceeeccCCcceeEEEEec---Cccccee--
Confidence 44567666554 89999988633 1233333344434333222221 33588899999999998875 2222221
Q ss_pred eeeccCCcccC--cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 220 HHYNKDGSVNN--SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 220 ~~~~~~~~~~~--~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
|. -.++.+++++++. ++++.+....|..|.++.++...... ....
T Consensus 155 ---------h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~-----------------------~~a~ 201 (344)
T KOG4532|consen 155 ---------HNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENI-----------------------YEAP 201 (344)
T ss_pred ---------eccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeee-----------------------Eecc
Confidence 22 2378999999999 88888888999999998644322210 0111
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE-----EeeeecCCceEEEEEccCCC--EEEEEeCCCeEEEEEC
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-----CGGKSYYGALLCCAWSMDGK--YILTGGEDDLVQVWSM 370 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~~~~~v~~l~~spdg~--~l~sgs~dg~I~vwd~ 370 (548)
-+..=.+..|+.....+|+++.||++.|||++..... .+-..|.+.++.+.|++-|. +|+..-.-+.+++.|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 1234457789988889999999999999999865432 22345889999999998664 4555555689999999
Q ss_pred CCceeEEecc-------CCCC-CeEEEEEec
Q 008939 371 EDRKVVAWGE-------GHNS-WVSGVAFDS 393 (548)
Q Consensus 371 ~~~~~~~~~~-------~h~~-~V~~v~~~p 393 (548)
++++..+.+. .|.. .|..-.|+.
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccC
Confidence 9986544332 2332 366666654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.5e-08 Score=86.80 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=121.1
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-----EC
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-----GR 319 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-----~~ 319 (548)
-++++..||.+.+++.++.-......+.... + -.+.+....++.+.++ ..
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~------------------------~-~as~~~~~~~~~i~s~~~g~~n~ 157 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHS------------------------G-SASRKICRHGNSILSGGCGNWNA 157 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccc------------------------c-ccccceeecccEEecCCcceEee
Confidence 5899999999999998763222221111100 0 0011111223333332 12
Q ss_pred CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCce-eEEeccCCCCCeEEEEEecCCCC
Q 008939 320 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~-~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
-+..++|+++..+.+..-+.....|.+++-+|..+ ++++|++||.+-+||++... ++..+..|+.+|+.|.|+|.
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk--- 234 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK--- 234 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC---
Confidence 23566777764433222222223488999888654 66778889999999999875 44567789999999999993
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
++ ..|+++++||.+..||..+.- +. +.......+.+.+.+- .-...++....+
T Consensus 235 ---~p------~~Lft~sedGslw~wdas~~~-l~-i~~~~s~~s~WLsgD~----------------v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 235 ---NP------EHLFTCSEDGSLWHWDASTTF-LS-ISNQASVISSWLSGDP----------------VKSRIEITSLLP 287 (319)
T ss_pred ---Cc------hheeEecCCCcEEEEcCCCce-EE-ecCccccccccccCCc----------------ccceEeeecccc
Confidence 44 579999999999999987522 21 1111111111111111 000011111111
Q ss_pred eEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEe
Q 008939 478 LVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 511 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~ 511 (548)
.-...|+++...-+.|++|+.-+.|.+.+
T Consensus 288 -----~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 288 -----SRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -----ccceeeeeeeccCceEEeccccceEEEec
Confidence 12345777777778899999999998875
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-07 Score=91.17 Aligned_cols=303 Identities=15% Similarity=0.144 Sum_probs=178.8
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccccee---eeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV---GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
....|++|+.+ ..++++|+.||.+++..+.+...+..++-. .....+....+|+..|.-+.|+.+.+ .|-++.
T Consensus 15 vkL~c~~WNke---~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSD 90 (1189)
T ss_pred ceEEEEEEccc---CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccC
Confidence 35689999988 779999999999999999885444333321 12223444557999999999998888 899999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.+|-|.||-+-++.= +....+ ...+.-|.+++|..||..++.+..||.|.|=.++-
T Consensus 91 t~GlIiVWmlykgsW----~EEMiN--------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG 146 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSW----CEEMIN--------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG 146 (1189)
T ss_pred CCceEEEEeeecccH----HHHHhh--------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence 999999999865210 000000 00126688999999999999999999998887763
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc-------eeEEec----cCCCCCeEEEEEecCCCCC-
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR-------KVVAWG----EGHNSWVSGVAFDSYWSQP- 398 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~-------~~~~~~----~~h~~~V~~v~~~p~~~~~- 398 (548)
. .+..-.-.......+.|++|.+.++.+-.+|.+++||.+.. .+.... ......|-.+.|..-.-.|
T Consensus 147 N-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 147 N-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred c-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 3 33211111122346889999999999989999999998642 111111 1111235556664211111
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCc---cccCCeeeecccCCCCceeecCCC
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS---AHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
.+|. ..|+.+-..|.+.|..-........+..+-.+....++.+|.. ...+.. ..-..+.....+-.+-+
T Consensus 226 ~pdr------P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~d-a~~~~d~n~v~Fysp~G 298 (1189)
T KOG2041|consen 226 PPDR------PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSD-ADEPTDSNKVHFYSPYG 298 (1189)
T ss_pred CCCC------CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCccc-ccCccccceEEEeccch
Confidence 1133 5788888888877764433332222222111222223333210 000000 00001111122233455
Q ss_pred CceEEeecCCCCeeEEEEeCCeE-EEEECCCeEEEEeC
Q 008939 476 SPLVAHRVHTEPLSGLIFTQESV-LTVCREGHIKIWMR 512 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd~l-~t~s~Dg~I~iW~~ 512 (548)
..+..++.....|+++.|--.+| +.-.-|+.|.+=++
T Consensus 299 ~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANI 336 (1189)
T ss_pred hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEee
Confidence 66777777778889888876542 33344555554443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=89.50 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=113.2
Q ss_pred CceeEEeCCCCCE-EEEe-cC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcC--CcEEEE
Q 008939 132 SMTNTNFDGKGTY-IIFN-VG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNS--GDVYSV 203 (548)
Q Consensus 132 ~v~~~~~~~~g~~-l~~~-~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~d--g~I~iw 203 (548)
......|+|||+. +++. .. + .|+++|+.++..+ .+...+.......|+|+ +..|+.. ..+ .+|+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---~lt~~~g~~~~~~~SPD---G~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---KIASSQGMLVVSDVSKD---GSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---EEecCCCcEEeeEECCC---CCEEEEEEccCCCcEEEEE
Confidence 5668999999985 5542 22 3 7999999875533 33334445667889999 6555544 334 458888
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|+.... .+++. . +........|+|||+.++++....+ .|+++|+..+......+
T Consensus 263 dl~~g~---~~~LT---~-------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~----------- 318 (419)
T PRK04043 263 DTNTKT---LTQIT---N-------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF----------- 318 (419)
T ss_pred ECCCCc---EEEcc---c-------CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----------
Confidence 876521 11111 1 1222334579999996666665555 46666665421100000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---------CeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
. +. ....|+|||++|+..... ..|.+.|+.+++... +... .......|+||
T Consensus 319 --------------~---g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 319 --------------H---GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred --------------C---CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 0 11 124899999998877654 368888988776432 3222 22335889999
Q ss_pred CCEEEEEeCC---CeEEEEECCC
Q 008939 353 GKYILTGGED---DLVQVWSMED 372 (548)
Q Consensus 353 g~~l~sgs~d---g~I~vwd~~~ 372 (548)
|+.|+....+ ..+.+.+++.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCC
Confidence 9987765543 2366667654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-06 Score=83.12 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=167.8
Q ss_pred CCceeEEeCCCCCEEEEecC----------------CeEEEEEccCCCCCCeEEEecCCCC--ce-EEEecCCCCCCceE
Q 008939 131 TSMTNTNFDGKGTYIIFNVG----------------DAIFISDLNSQDKDPIKSIHFSNSN--PV-CHAFDQDAKDGHDL 191 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~----------------d~v~vwd~~~~~~~~i~~~~~~~~~--~~-~~~~~p~~~~~~~l 191 (548)
.-|..+.|+|.+++|.+-.. +.+.|||..++. .+..+...+.. .+ -+.|+.+.+ ++
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ 146 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGWPVLKFSIDDK---YV 146 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce--eEeeccccCCcccccceeeeeecch---hh
Confidence 34667889999999886332 258999999865 66665554433 33 677877733 22
Q ss_pred EEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc-EEEE-----EeCCCcEEEEEcCCCCC
Q 008939 192 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG-AFVV-----GHADGNLYVYEKSKDGA 265 (548)
Q Consensus 192 ~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~-~l~s-----~~~dg~v~vwd~~~~~~ 265 (548)
+ --....++|+++...+...-.+ ..-...|....|+|.+++ .|+. ...++.+++|.+.....
T Consensus 147 A-Rvv~~sl~i~e~t~n~~~~p~~-----------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 147 A-RVVGSSLYIHEITDNIEEHPFK-----------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred h-hhccCeEEEEecCCccccCchh-----------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 2 2244578999863211100000 012466888999998543 3333 45667888888764211
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-----------CCCeEEEEeCCCCeEE
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-----------RDGYLRVFDYSKEQLI 334 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-----------~dg~v~vwd~~~~~~~ 334 (548)
.... ..-+..=..+.|.+.|++|+.-- ....+.++++....+.
T Consensus 215 -l~tk-------------------------~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~ 268 (561)
T COG5354 215 -LVTK-------------------------NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP 268 (561)
T ss_pred -eeee-------------------------eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence 1110 00012223577777777665421 1246788888744333
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEe--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
.. ....++|...+|.|+++.+++.+ .+-.+.++|++.. .+..+ .+..-..+.|+| .+ ++++
T Consensus 269 V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-------~~------r~il 331 (561)
T COG5354 269 VE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-------HE------RYIL 331 (561)
T ss_pred ee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-------cc------cEEE
Confidence 22 25578999999999998776644 6889999999865 33333 344556788999 77 7888
Q ss_pred EEeCC---CeEEEEECCCCeEEe-eeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecC
Q 008939 413 SVGQD---TRLLLWDLEMDEIVV-PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP 473 (548)
Q Consensus 413 s~~~D---g~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~ 473 (548)
.++-| |.|.+||......+. .+.. .......+++++..-.-+..-.--..|..+.+||+-
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 87765 789999988766555 3333 333334466666422222221222345667777764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-05 Score=72.41 Aligned_cols=212 Identities=21% Similarity=0.236 Sum_probs=132.1
Q ss_pred eEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 135 NTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 135 ~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
...|++ ++.++++.... .|+.|+..++. ...+.... +..+++... ...|+++... .+.++|+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~---~g~l~v~~~~-~~~~~d~~~g---- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRP---DGRLYVADSG-GIAVVDPDTG---- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEESSS--EEEEEEECT---TSEEEEEETT-CEEEEETTTT----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe---EEEEecCC--CceEEEEcc---CCEEEEEEcC-ceEEEecCCC----
Confidence 467887 66666665544 99999988633 33333333 888888843 3456666654 4455576652
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--------CcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
++...... .........++++++.|+|. +.++.... |.|+.++... .
T Consensus 71 --~~~~~~~~-~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~--~------------------- 125 (246)
T PF08450_consen 71 --KVTVLADL-PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG--K------------------- 125 (246)
T ss_dssp --EEEEEEEE-ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS--E-------------------
T ss_pred --cEEEEeec-cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC--e-------------------
Confidence 22111111 11112467889999999998 55554433 4466665541 1
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCeEEEEeCCCC-e-E-----EEeeeecCCceEEEEEccCCCEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGYLRVFDYSKE-Q-L-----ICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~v~vwd~~~~-~-~-----~~~~~~~~~~v~~l~~spdg~~l 356 (548)
+..+...-...+.++|+|+++.|+ +-+..+.|..|++... . . ...+....+..-.+++..+|++.
T Consensus 126 -------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 126 -------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp -------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred -------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 111112225678999999998776 4556788999998532 1 1 12222222347789999999988
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
++....+.|.++|.+ ++.+..+......+++++|-
T Consensus 199 va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 199 VADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred EEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888889999999988 88887777555689999994
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=95.66 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=128.4
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
+|...|..++--.+.+ -|++++.|.+|++|.++.++....+ ......++.|+.+|+++.|
T Consensus 733 GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t-------------------saCQfTY~aHkk~i~~igf 792 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT-------------------SACQFTYQAHKKPIHDIGF 792 (1034)
T ss_pred CcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc-------------------ceeeeEhhhccCcccceee
Confidence 4777888776655555 7999999999999999875543221 2245567889999999999
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEcc--CCCEEEE-EeCCCeEEEEECCCceeEEecc--
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSM--DGKYILT-GGEDDLVQVWSMEDRKVVAWGE-- 380 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~sp--dg~~l~s-gs~dg~I~vwd~~~~~~~~~~~-- 380 (548)
-.+-++++++ ||-|.+||.-.++++..+.. ..+.+..+..-+ +..+++. ++...+|+++|.+.++.+..++
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 9988887765 88999999987776553221 122222233223 3444444 4778999999999987666554
Q ss_pred ---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 381 ---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 381 ---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+.+..+.+++..| .| ++++.+-..|+|.+.|.++|+.+..++.
T Consensus 871 na~~Pna~~R~iaVa~-------~G------N~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVAD-------KG------NKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cCCCCchheeEEEecc-------Cc------chhhHHhcCCcEEEEecCCCceeccCCc
Confidence 4567789999988 78 7999999999999999999998876654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-05 Score=79.15 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=130.7
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
..++++..+ .++-+|.++++ .+-+..... .+. -+|-- .+..++++..+|.|+.+|.++ ++.+.....
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~-~~~---ssP~v-~~~~v~v~~~~g~l~ald~~t-----G~~~W~~~~ 188 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGE--VAWQTKVAG-EAL---SRPVV-SDGLVLVHTSNGMLQALNESD-----GAVKWTVNL 188 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCC--CcccccCCC-cee---cCCEE-ECCEEEEECCCCEEEEEEccC-----CCEeeeecC
Confidence 444454444 88889988866 444433222 111 11111 144678888899999999876 343332211
Q ss_pred eccCC--cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 222 YNKDG--SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 222 ~~~~~--~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
..+.. .....++ .. +. .++.+..+|.++.+|..+ +......+...... ...+.
T Consensus 189 ~~~~~~~~~~~sP~----v~--~~-~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~-----------~~~~~------ 243 (394)
T PRK11138 189 DVPSLTLRGESAPA----TA--FG-GAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTG-----------ATEID------ 243 (394)
T ss_pred CCCcccccCCCCCE----EE--CC-EEEEEcCCCEEEEEEccC-ChhhheeccccCCC-----------ccchh------
Confidence 00000 0001111 11 22 567778889999999876 44333322111000 00000
Q ss_pred CCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 300 GSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 300 ~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
....+.-+| .+..++.++.+|.+..+|..+++.+..... .....+. .++..|+.++.++.+..+|.++++.+-
T Consensus 244 -~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 244 -RLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred -cccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 000111122 245677778899999999999988765432 1121222 245678888899999999999987654
Q ss_pred eccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 378 WGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 378 ~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
....-. ......... ++ +|..++.||.|.+.|..+++.+...+
T Consensus 319 ~~~~~~~~~~~sp~v~--------~g-------~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 319 SQSDLLHRLLTAPVLY--------NG-------YLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred cccccCCCcccCCEEE--------CC-------EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 332111 112222222 44 67788999999999999998776554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-05 Score=79.52 Aligned_cols=212 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCce-EEEEEcC---CcEEEEEeeecccccccceeeeeeeccCCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHD-LLIGLNS---GDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~-l~~g~~d---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 227 (548)
.|.+-|.+... .+.+.... ......|+|+ ++. ++..+.+ .+|+++|+.+.. .+.+..
T Consensus 170 ~l~~~d~dg~~---~~~~~~~~-~~~~p~wSpD---G~~~i~y~s~~~~~~~Iyv~dl~tg~---~~~lt~--------- 230 (419)
T PRK04043 170 NIVLADYTLTY---QKVIVKGG-LNIFPKWANK---EQTAFYYTSYGERKPTLYKYNLYTGK---KEKIAS--------- 230 (419)
T ss_pred eEEEECCCCCc---eeEEccCC-CeEeEEECCC---CCcEEEEEEccCCCCEEEEEECCCCc---EEEEec---------
Confidence 66776766532 22233233 6678899999 553 5544443 458888886521 111111
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
..+......|+||+..++++.+.++ .|+++|+... . ...+..+.+.....
T Consensus 231 -~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g-~--------------------------~~~LT~~~~~d~~p 282 (419)
T PRK04043 231 -SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK-T--------------------------LTQITNYPGIDVNG 282 (419)
T ss_pred -CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC-c--------------------------EEEcccCCCccCcc
Confidence 2344567789999985666655554 5666676542 1 11111111223345
Q ss_pred EECCCCCEEEEEECC-C--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---------CeEEEEECCCc
Q 008939 306 AFSTDGTYLATVGRD-G--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED---------DLVQVWSMEDR 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d---------g~I~vwd~~~~ 373 (548)
.|+|||+.|+..+.. + .|.++|+.+++....... +. ....|+|||++|+..... ..|.+.|++++
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 799999988877642 3 588888887765333221 11 124899999988766543 36888898887
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEECCCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMD 428 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lwd~~~~ 428 (548)
... .+... .......|+| || +.|+-... ...|.+.++...
T Consensus 360 ~~~-~LT~~-~~~~~p~~SP-------DG------~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 360 YIR-RLTAN-GVNQFPRFSS-------DG------GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CeE-ECCCC-CCcCCeEECC-------CC------CEEEEEEccCCcEEEEEEecCCC
Confidence 643 33322 2233578999 98 44444332 234667777554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.1e-08 Score=89.54 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=100.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-----eEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCc
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-----QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~ 373 (548)
+.|.++.|...++++..|...|.|.++|++.+ .+...+ -|...|+++..-. ++++|++.+.+|.|++||++--
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 67888999988899999999999999999865 233333 3888899998776 7889999999999999999876
Q ss_pred ee---EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 374 KV---VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 374 ~~---~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
++ +..++||...-.-+-++- . +.+ ..++++++|...+||.++.+.++.++...
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v---~-~ee-------g~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHV---K-EEE-------GSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hcccceeeeeccccccccccccc---c-ccc-------ceEEEccCeeEEEEEecccCceeeccCCC
Confidence 66 888888866544444432 0 012 37888999999999999999999888763
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=80.98 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCC
Q 008939 300 GSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~ 372 (548)
..|.+++-+| +.+.+++|+.||.+-+||.+.... +..++.|+.++..+.|+| ++..|+++++||.+-.||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3488999999 456788889999999999987754 344788999999999999 557899999999999999874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-06 Score=87.20 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=165.6
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
...-||.++|..+.|+.+...+-++..+ .|.||-+-.+.+-.-..-.-.++-+.++.|+.+ |..+.+...||.|.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d---G~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD---GTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC---CcEEEEEEccCCEEE
Confidence 4567899999999999988888776655 899999887653111011124556788888888 778999999999887
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
=.++. .++ |.++. ...-...+.|++|.+ .++.+-..|.+.+||...+- ...+..... ....
T Consensus 142 GsvdG------NRI-----wgKeL--kg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF--~~Kl~~~c~---Vn~t 202 (1189)
T KOG2041|consen 142 GSVDG------NRI-----WGKEL--KGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNF--ERKLEKDCE---VNGT 202 (1189)
T ss_pred Eeecc------cee-----cchhc--chheccceeecccHH-HHHhhhcCCcEEEecccccH--HHhhhhceE---Eeee
Confidence 77664 112 12221 122345788999998 78888889999999975321 111110000 0000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
..-.+....+.......++..- .-||...|+++...|.+.|..-+.......+. ..-.+....|+++|..|++++.+
T Consensus 203 g~~s~~~~kia~i~w~~g~~~~--v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 203 GIFSNFPTKIAEIEWNTGPYQP--VPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eeecCCCccccceeeccCcccc--CCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 0000000001111111122111 13577889999999999988665433222222 22568889999999999998864
Q ss_pred C---------eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 363 D---------LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 363 g---------~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
. .|++|.. -|+.+.+++-....|++++|-. .| .+++ -..|+.|.+=+++-.
T Consensus 280 ~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg-------~g------LriA-~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEG-------TG------LRIA-IAVDSFIYFANIRPE 339 (1189)
T ss_pred ccccCccccceEEEecc-chhheEEEecCCceeeeeEEcC-------Cc------eEEE-EEecceEEEEeeccc
Confidence 2 4555543 3677788888889999999954 44 3443 345788888887754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-05 Score=78.06 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=112.2
Q ss_pred CCCeEEEEECCCCCEEEEEECCC-eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 299 QGSINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.+.|.-..+.-+++-++.|..|| .|-|||.++++... +...-+.|.++..+|+|++++++.....|-+.|++++....
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 36688788887888899999999 89999999887554 45566889999999999999999988999999999998766
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeEEEEECCCCeEEeeeecCCCCCCceecCCCC
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (548)
.-+...+-|+.+.|+| ++ ++|+-+--+ ..|+++|+..++............+++|.+++.
T Consensus 438 idkS~~~lItdf~~~~-------ns------r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 438 IDKSEYGLITDFDWHP-------NS------RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred ecccccceeEEEEEcC-------Cc------eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 6666778899999999 88 677766554 469999999988776555445667777777774
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-07 Score=91.72 Aligned_cols=244 Identities=11% Similarity=0.088 Sum_probs=153.0
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEec-CCeEEEEEccCCCC-C----CeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDK-D----PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~-~----~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
-.+.||.+.|..+.--.+..-+++++ +++|++|.++.... . .-.+...|+..+..+.|-.+ .-.+++.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----LRSIASCD 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----cceeeecc
Confidence 35678888887775544444444544 45999999985331 1 11222336778888888765 23567889
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CCcEEEEE-eCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GDGAFVVG-HADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
|.|.+||.-- ++.+.+.....+ .+.+..+...++ ...+++.+ +...+|+++|.+..
T Consensus 804 ~giHlWDPFi-----gr~Laq~~dapk-----~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------------ 861 (1034)
T KOG4190|consen 804 GGIHLWDPFI-----GRLLAQMEDAPK-----EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------------ 861 (1034)
T ss_pred Ccceeecccc-----cchhHhhhcCcc-----cCCCceeEecccCcchheeeeccchhhheeeecccc------------
Confidence 9999999643 222221111111 223333444443 22244444 78899999999863
Q ss_pred cceeeeecCCCCCCCCeeEeeec-----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~s 350 (548)
..+..|+.+ ++.+.+++.-+.|+.++.+-..|.|.+.|.++|+.+..++.....+..++ .
T Consensus 862 --------------e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 862 --------------EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-A 926 (1034)
T ss_pred --------------cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-C
Confidence 223333332 36688999999999999999999999999999999887776555555454 3
Q ss_pred cCCCEEEEEeCCCeEEE-EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 351 MDGKYILTGGEDDLVQV-WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~v-wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|..+.|+....|..+.+ |..-++......+....+..-+.- -| .-|+++.....+.+|-
T Consensus 927 psdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqs---------vg------pSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQS---------VG------PSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhc---------cC------ceeEEeccCcEEEEEe
Confidence 55567888878999998 987777655554433332221110 22 3566666666666663
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-07 Score=86.16 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=122.5
Q ss_pred EecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEE
Q 008939 180 AFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYE 259 (548)
Q Consensus 180 ~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd 259 (548)
+|+-+.. +-. ++.+.+-.|.+-|+++..++. .. .++.|.++.|...++ ++..|+.+|.|.++|
T Consensus 218 awSlni~-gyh-fs~G~sqqv~L~nvetg~~qs-------f~-------sksDVfAlQf~~s~n-Lv~~GcRngeI~~iD 280 (425)
T KOG2695|consen 218 AWSLNIM-GYH-FSVGLSQQVLLTNVETGHQQS-------FQ-------SKSDVFALQFAGSDN-LVFNGCRNGEIFVID 280 (425)
T ss_pred hhhhccc-eee-ecccccceeEEEEeecccccc-------cc-------cchhHHHHHhcccCC-eeEecccCCcEEEEE
Confidence 7775533 222 445556678888888732211 11 467888999998888 999999999999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeE---EE
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQL---IC 335 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~---~~ 335 (548)
++...+. +..+.++ --|...|+++..-. ++++|++.+.+|.|++||++.-++ +.
T Consensus 281 LR~rnqG---------------------~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~ 338 (425)
T KOG2695|consen 281 LRCRNQG---------------------NGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM 338 (425)
T ss_pred eeecccC---------------------CCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee
Confidence 9863111 0111222 12568899988766 788999999999999999987766 77
Q ss_pred eeeecCCceE--EEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC----CCCeEEEEEec
Q 008939 336 GGKSYYGALL--CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDS 393 (548)
Q Consensus 336 ~~~~~~~~v~--~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p 393 (548)
++.+|-..-. -+...+....++++++|...+||.++.+..+.++.-. +..+..++|..
T Consensus 339 qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 339 QYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 7777744222 2233455568888999999999999999998887632 23455677754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-05 Score=83.58 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=134.7
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..+.|-.+ .+.++++...|.|.+.|.++....... .....|.+++|+||++ .++....++
T Consensus 69 ~~i~s~~fl~d---~~~i~v~~~~G~iilvd~et~~~eivg-------------~vd~GI~aaswS~Dee-~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD---TNSICVITALGDIILVDPETLELEIVG-------------NVDNGISAASWSPDEE-LLALITGRQ 131 (1265)
T ss_pred cceEEEEEecc---cceEEEEecCCcEEEEcccccceeeee-------------eccCceEEEeecCCCc-EEEEEeCCc
Confidence 47788888877 778999999999999987763211111 1467899999999999 888888888
Q ss_pred cEEEEEcCCCCCCCCCc----------ccc---cccceeeeecCCCCCCCCeeEee------ecCCCeEEEEECCCCCEE
Q 008939 254 NLYVYEKSKDGAGDSSF----------PVI---KDQTQFSVAHPRYSKSNPIARWH------ICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~g~~l 314 (548)
++.+-+..-.--....+ ... +...+|....++.....++...+ .+ ..=+.+.|--||+++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccCCcEE
Confidence 88776543211111111 000 00111111111111111111111 11 122358899999999
Q ss_pred EEEE----CC-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe---CCCeEEEEECCC---ceeEEeccCCC
Q 008939 315 ATVG----RD-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSMED---RKVVAWGEGHN 383 (548)
Q Consensus 315 ~s~~----~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~vwd~~~---~~~~~~~~~h~ 383 (548)
|+.. .+ +.|+|||-+ +.+-..-..-.+.=.+++|-|.|.++++-. .|+.|.++--+- ++.+..+....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 9832 23 789999987 554333333334445799999999888743 455788886432 22233333344
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEE---EeCCCeEEEEECCCCe
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGS---VGQDTRLLLWDLEMDE 429 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s---~~~Dg~i~lwd~~~~~ 429 (548)
..|..++|+. ++ ..|+. ......|++|-+..-.
T Consensus 290 ~~ve~L~Wns-------~s------diLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNS-------NS------DILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecC-------CC------CceeeeecccccceEEEEEecCeE
Confidence 5599999987 76 45555 4555669999987654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-05 Score=76.75 Aligned_cols=190 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEE-EEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTS-VTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
+..++++..+|.|+.+|.++ ++.+..... ...+.+ .... + . .++++..+|.|+.+|..+ ++.
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-----G~~~W~~~~--------~~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~t-G~~ 182 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-----GEVAWQTKV--------AGEALSRPVVS-D-G-LVLVHTSNGMLQALNESD-GAV 182 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCCcccccC--------CCceecCCEEE-C-C-EEEEECCCCEEEEEEccC-CCE
Confidence 45788899999999999876 333322111 111111 1111 3 3 677788899999999886 443
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCC----
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---- 342 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---- 342 (548)
...++.... .........++ . .+..++.++.++.+..+|..+++.+........
T Consensus 183 ~W~~~~~~~----------------~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 183 KWTVNLDVP----------------SLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred eeeecCCCC----------------cccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 333321100 00000000111 1 123566677889999999999887655431110
Q ss_pred ---ceEEEEEcc--CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 343 ---ALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 343 ---~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
....+..+| .+..++.++.++.+..+|..+++.+-... .. ....+... ++ .+..++.|
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~~~~--------~~-------~vy~~~~~ 303 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDFAVD--------GG-------RIYLVDQN 303 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCcEEE--------CC-------EEEEEcCC
Confidence 011111122 24467777789999999999998764432 11 11122222 33 67777889
Q ss_pred CeEEEEECCCCeEEee
Q 008939 418 TRLLLWDLEMDEIVVP 433 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~ 433 (548)
+.|..+|..+++.+..
T Consensus 304 g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 304 DRVYALDTRGGVELWS 319 (394)
T ss_pred CeEEEEECCCCcEEEc
Confidence 9999999999887643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=80.74 Aligned_cols=254 Identities=15% Similarity=0.210 Sum_probs=152.6
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC----cccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS----FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
....|+++.|...|. +|++|...|.|.+|.-......... ++.....- ..+..+.. ...|..
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF------------DYLkSlei-eEKin~ 90 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF------------DYLKSLEI-EEKINA 90 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccch------------hhhhhccH-HHHhhh
Confidence 467899999999988 9999999999999987653222211 11111000 00111111 146788
Q ss_pred EEECCCC--CEEEEEECCCeEEEEeCCCCeE-------------------------------------EEe------eee
Q 008939 305 IAFSTDG--TYLATVGRDGYLRVFDYSKEQL-------------------------------------ICG------GKS 339 (548)
Q Consensus 305 ~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~-------------------------------------~~~------~~~ 339 (548)
+.|..++ ..++..+.|.+|++|.+....+ +.. -..
T Consensus 91 I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 91 IEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred eeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 8887643 4677778999999998753210 000 023
Q ss_pred cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce---eEEeccCCC-----CCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHN-----SWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 340 ~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~---~~~~~~~h~-----~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
|.-.|+++.+..|.+.++++ .|=.|.+|+++-.. -+.-++.|. .-|++..|+| .. +..+
T Consensus 171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp-------~~-----cn~f 237 (460)
T COG5170 171 HPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP-------EM-----CNVF 237 (460)
T ss_pred ceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH-------hH-----cceE
Confidence 55568889999998888776 67899999986421 233344453 5688899998 21 2577
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
.-.+..|.|++-|++...+...-.. ......+ ...+.-+.+-...|..+
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~k-----lfe~~~D--------------------------~v~~~ff~eivsSISD~ 286 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKK-----LFELTID--------------------------GVDVDFFEEIVSSISDF 286 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchh-----hhhhccC--------------------------cccchhHHHHhhhhcce
Confidence 7778889999999985432110000 0000000 00011122334678999
Q ss_pred EEeCCe-EEEEECCCeEEEEeCCCCCcccc---------------CCCCcEE-----EecCCCCceEeee
Q 008939 492 IFTQES-VLTVCREGHIKIWMRPGVAESQS---------------SSSETVL-----STSSKDKPLLSSK 540 (548)
Q Consensus 492 ~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~---------------~~~~~v~-----~~s~d~~~l~s~~ 540 (548)
.|++++ ++.+-.=-+|+|||+.-.+-... -....++ .+|.|++.+.+|.
T Consensus 287 kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 287 KFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred EEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 999986 55555557899999765542211 1223343 6777777777764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-05 Score=73.25 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=112.9
Q ss_pred eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec-------CCCCceEEEecCCCCC---CceEEEEEcCCcEEE
Q 008939 134 TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF-------SNSNPVCHAFDQDAKD---GHDLLIGLNSGDVYS 202 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~-------~~~~~~~~~~~p~~~~---~~~l~~g~~dg~I~i 202 (548)
..++|+||+.+++++... +|+|+|+.... +..+.- -...+..+.|-+...+ ...|++-..+|.++-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 579999999999998776 99999998532 111111 1123444455443211 235777788888887
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|-+.....+..+.... ..+.. .....|+++.|+|..+ +|++|+.... -..+...
T Consensus 124 y~vs~gt~q~y~e~hs-fsf~~---~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~-------------------- 178 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHS-FSFSS---HYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKAS-------------------- 178 (282)
T ss_pred EEEEcccCCcceeeEE-EEecc---cCCCceeEEEEcCCCC-EEEEeccCCCCCcccccc--------------------
Confidence 7664211111111111 11111 1467899999999988 6666654322 0000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEE-CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAF-STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
..-+..|+.-.+......+ +.+...-...... .+|.+-+.+...........|..+..||||++||+..
T Consensus 179 -------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 179 -------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred -------ccCceEEEEcCCCCcEEEccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 0112222222222221111 1111111111122 2333322222222233467899999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~ 381 (548)
.+|.|.+|++-.-++...+.-
T Consensus 249 ~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cCCeEEEEecCcchhhcccch
Confidence 999999999988776665553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-07 Score=81.40 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=146.5
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeee------eeeccCCcccCcceEEEEEecCCC-cE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA------HHYNKDGSVNNSRCTSVTWVPGGD-GA 245 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~l~~~p~~~-~~ 245 (548)
.+.++.+.|... |.+|++|...|.|.+|.-+....-..+-.... ..+.+... ....|..|.|..++. +.
T Consensus 26 ad~ItaVefd~t---g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSle-ieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDET---GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE-IEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccc---cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhcc-HHHHhhheeeecCCCcce
Confidence 346778888877 88999999999999997654210001111111 11111211 356789999976553 47
Q ss_pred EEEEeCCCcEEEEEcCCCC-------CCCCCccccccc-----ceeeee----cCCCCCCCCeeEe-eecCCCeEEEEEC
Q 008939 246 FVVGHADGNLYVYEKSKDG-------AGDSSFPVIKDQ-----TQFSVA----HPRYSKSNPIARW-HICQGSINSIAFS 308 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~-------~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~-~~h~~~v~~~~~s 308 (548)
|+....|.+|++|.+.... .....+.....+ ...... |.......|.+.. ..|..-|+++.|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 8888899999999986421 000001000000 000000 0000012233333 5677889999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCe---EEEeeeecC-----CceEEEEEccCC-CEEEEEeCCCeEEEEECCCcee----
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQ---LICGGKSYY-----GALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKV---- 375 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~-----~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~---- 375 (548)
.|.+.++++ .|=.|.+|+++.-. .+..++.|. .-|++..|+|.. ..+.-.+..|.|++.|++....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998888876 46789999986432 233344443 357888899864 3556667789999999984321
Q ss_pred ------------EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe-EEeee
Q 008939 376 ------------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE-IVVPL 434 (548)
Q Consensus 376 ------------~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~-~~~~~ 434 (548)
+..+.+-...|..+.|++ +| ++|++-. --+|+|||+++.+ ++.++
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~-------ng------ryIlsRd-yltvkiwDvnm~k~pikTi 318 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSD-------NG------RYILSRD-YLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcC-------CC------cEEEEec-cceEEEEecccccCCceee
Confidence 111223346788999999 88 6666544 3689999998753 44444
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.9e-06 Score=83.41 Aligned_cols=243 Identities=15% Similarity=0.188 Sum_probs=167.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
+...-..+.|+|.| +|+-|+. ..|.+-|..+ .+.++.+..|+..|+.+.|.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s--------------------------~q~iqsie~h~s~V~~VrWa 64 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS--------------------------LQLIQSIELHQSAVTSVRWA 64 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh--------------------------hhhhhccccCccceeEEEec
Confidence 44456789999998 6777765 4678888765 34566677788899999997
Q ss_pred CCC------------CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc---CC-CEEEEEeCCCeEEEEECCC
Q 008939 309 TDG------------TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM---DG-KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 309 p~g------------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp---dg-~~l~sgs~dg~I~vwd~~~ 372 (548)
|.. -+||++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++-..-..|.+|+..+
T Consensus 65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 631 2477788889999999999999999999999999999976 33 3566666678999999999
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-------CeEEeeeecCCCC-----
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-------DEIVVPLRRGPLG----- 440 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-------~~~~~~~~~~~~~----- 440 (548)
|+.+-..........++.++|+ |. +.+..-+..|.+.+-+.-. ++..+ +..+...
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPf------d~------rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~le 211 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPF------DS------RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLE 211 (1062)
T ss_pred CceeeccccCCcceeeeeeCCC------Cc------ceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhh
Confidence 9988777666677888999996 55 5666666677777665421 11111 1111000
Q ss_pred ------CCceecCCC-----------CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEE
Q 008939 441 ------GSPTFSTGS-----------QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVL 499 (548)
Q Consensus 441 ------~~~~~~~~~-----------~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~ 499 (548)
....-.+.+ ...+|.+.+ .-.+...+.++|++-..++.......+.+.-+.+-|+ .|+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 000000000 123444433 3345667778888777777777666666666777774 599
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
+.-.||.+.||-...
T Consensus 291 clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEecCCeEEEEEeec
Confidence 999999999998665
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=59.13 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=36.9
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
++++..+++|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=69.10 Aligned_cols=220 Identities=21% Similarity=0.243 Sum_probs=123.0
Q ss_pred eEEEEEccCCCCCCeEEEecCC--CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSN--SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~--~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 229 (548)
.|..||..+++ .+-.....+ ....+... +. +..++++..++.|+.||..+ ++.+... .. .....
T Consensus 4 ~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~-~~---~~~v~~~~~~~~l~~~d~~t-----G~~~W~~-~~--~~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGK--ELWSYDLGPGIGGPVATAV-PD---GGRVYVASGDGNLYALDAKT-----GKVLWRF-DL--PGPIS 69 (238)
T ss_dssp EEEEEETTTTE--EEEEEECSSSCSSEEETEE-EE---TTEEEEEETTSEEEEEETTT-----SEEEEEE-EC--SSCGG
T ss_pred EEEEEECCCCC--EEEEEECCCCCCCccceEE-Ee---CCEEEEEcCCCEEEEEECCC-----CCEEEEe-ec--ccccc
Confidence 56666766544 555554422 12221122 12 55788889999999999866 3333221 11 11111
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc-ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF-PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
.. ... .+. .++++..++.|+.+|..+ +...... ...... ......+...
T Consensus 70 ~~-----~~~-~~~-~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~----------------------~~~~~~~~~~ 119 (238)
T PF13360_consen 70 GA-----PVV-DGG-RVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPP----------------------AGVRSSSSPA 119 (238)
T ss_dssp SG-----EEE-ETT-EEEEEETTSEEEEEETTT-SCEEEEEEE-SSCT----------------------CSTB--SEEE
T ss_pred ce-----eee-ccc-ccccccceeeeEecccCC-cceeeeeccccccc----------------------cccccccCce
Confidence 11 122 233 567777888999999776 3322221 100000 0011112222
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc----------eEEEEEccCCCEEEEEeCCCe-EEEEECCCceeEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA----------LLCCAWSMDGKYILTGGEDDL-VQVWSMEDRKVVA 377 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------v~~l~~spdg~~l~sgs~dg~-I~vwd~~~~~~~~ 377 (548)
.++..++.+..++.|..+|+++|+.+......... +..-....++ .++.+..++. +.+ |+++++.+-
T Consensus 120 ~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 120 VDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp EETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred EecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence 23778888888999999999999998877654322 1122222344 6777777775 556 999998663
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
... ...+..+. .+ ++ ..|+.++.++.|..||+++++.+..
T Consensus 198 ~~~--~~~~~~~~-~~-------~~------~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 198 SKP--ISGIYSLP-SV-------DG------GTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEC--SS-ECECE-EC-------CC------TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred Eec--CCCccCCc-ee-------eC------CEEEEEeCCCEEEEEECCCCCEEeE
Confidence 222 22233311 22 33 2566666999999999999998753
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=82.51 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=150.6
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecC-C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.-+..|-..+..++.+-+|..+++... | .++++|++.-..-....+.+-|..+.+ ..+|..+-....+....+|.|.
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIF 125 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcE
Confidence 345567778888899999998888555 6 999999998443233444444533332 3333322112333345678899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++|-.....+ .... ...|..+|.++.+.|-+. .+++....|.|..|..... ++..+....+..
T Consensus 126 VvD~~~d~~q---~~~f-------kklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~------~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 126 VVDGFGDFCQ---DGYF-------KKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGP------FQFPRTNLNFEL 188 (558)
T ss_pred EECCcCCcCc---ccee-------cccccCceEEEEeecccc-ceeeccccceeEeecCCCc------ccCccccccccc
Confidence 9986652211 1111 123899999999999999 8999999999999987630 111111111111
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----------------------
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---------------------- 339 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------------------- 339 (548)
- ...-+..+...+....++.|+|++..+.+-..|..|+++++.++++++.+..
T Consensus 189 K-----~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgR 263 (558)
T KOG0882|consen 189 K-----HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGR 263 (558)
T ss_pred c-----ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhh
Confidence 1 1122333334457788999999999999999999999999998876544321
Q ss_pred ----------cC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 340 ----------YY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 340 ----------~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
|. -.-..+.|...|++|+-|+-= -|++.++.+++++..+
T Consensus 264 Rmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 264 RMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEe
Confidence 11 123456788888888877643 4889999988877655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00015 Score=68.88 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=130.8
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe-cCCCcEEEEEeCCCcEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV-PGGDGAFVVGHADGNLY 256 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~~l~s~~~dg~v~ 256 (548)
+.+|.+. ++.++++-...+.|+.|+.... +... . .......+++. +++ .|+++..++ +.
T Consensus 4 gp~~d~~--~g~l~~~D~~~~~i~~~~~~~~-----~~~~--~--------~~~~~~G~~~~~~~g--~l~v~~~~~-~~ 63 (246)
T PF08450_consen 4 GPVWDPR--DGRLYWVDIPGGRIYRVDPDTG-----EVEV--I--------DLPGPNGMAFDRPDG--RLYVADSGG-IA 63 (246)
T ss_dssp EEEEETT--TTEEEEEETTTTEEEEEETTTT-----EEEE--E--------ESSSEEEEEEECTTS--EEEEEETTC-EE
T ss_pred ceEEECC--CCEEEEEEcCCCEEEEEECCCC-----eEEE--E--------ecCCCceEEEEccCC--EEEEEEcCc-eE
Confidence 5677774 2667777777899999998762 1111 1 12227788888 554 566666644 55
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--e-cCCCeEEEEECCCCCEEEEEECC--------CeEEE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--I-CQGSINSIAFSTDGTYLATVGRD--------GYLRV 325 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~sp~g~~l~s~~~d--------g~v~v 325 (548)
++|..+. .... +.... . .....+.+++.++|++.++.... |.|..
T Consensus 64 ~~d~~~g-~~~~-----------------------~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 64 VVDPDTG-KVTV-----------------------LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEETTTT-EEEE-----------------------EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred EEecCCC-cEEE-----------------------EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5587652 1100 11110 0 12568899999999977776543 55777
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCC--c-----eeEEeccCCCCCeEEEEEecCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMED--R-----KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~--~-----~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
++.. ++...... .....+.|+|+||++.|+ +-+..+.|..+++.. . +....+....+..-.++++.
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~---- 193 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS---- 193 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT----
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC----
Confidence 7777 55443333 345678999999999765 566788999999863 2 12223333333578899998
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCcee
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTF 445 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~ 445 (548)
+| ++.++.-..+.|.++|.+ ++.+..+... ....+++|
T Consensus 194 ---~G------~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 194 ---DG------NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ---TS-------EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ---CC------CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 88 677777788999999987 8888888764 44445555
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.2e-08 Score=99.40 Aligned_cols=218 Identities=14% Similarity=0.145 Sum_probs=149.0
Q ss_pred CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
.++++.++-+....+|++|+-. .+.|++|+..|+|+++++.+.. .. .....|..+|+-+.=+.+|
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~---~~hL~vG~~~Geik~~nv~sG~-----~e-------~s~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGG---TNHLAVGSHAGEIKIFNVSSGS-----ME-------ESVNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred cccchhhhccccceeeEEeecC---CceEEeeeccceEEEEEccCcc-----cc-------ccccccccccccccccCCc
Confidence 4567777778889999999988 7789999999999999998732 11 1122489999999999999
Q ss_pred CcEEEEEeCCC-cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 243 DGAFVVGHADG-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
..+|.+++... -..+|++..-+.....| ..-.++.|+..-+.-+.|....
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----------------------------~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSF-----------------------------DEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccccc-----------------------------cccceeehhhhHHHHHhccccc
Confidence 84444444433 57799987644333333 2355788988655555565556
Q ss_pred eEEEEeCCCCeEEEee-ee---cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCC
Q 008939 322 YLRVFDYSKEQLICGG-KS---YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~-~~---~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
...+||++++..+.++ .+ ....-++..|+|+.++++ +|| .+||++..+.++.|...+..+. =.|+|
T Consensus 1207 ~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP---- 1276 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHP---- 1276 (1516)
T ss_pred ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccC----
Confidence 7899999998765552 11 111236788999988765 343 5899998888877765443333 35899
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
.| ..++..+ -|||+++-+.++.+.. -....+.|...|
T Consensus 1277 ---~g------~eVIINS-----EIwD~RTF~lLh~VP~-Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1277 ---SG------NEVIINS-----EIWDMRTFKLLHSVPS-LDQCAVTFNSTG 1313 (1516)
T ss_pred ---CC------ceEEeec-----hhhhhHHHHHHhcCcc-ccceEEEeccCc
Confidence 88 4565544 5899999887766654 233445555544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00012 Score=69.55 Aligned_cols=237 Identities=17% Similarity=0.115 Sum_probs=141.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+.-.++.+|.....++.+-.-|. +.+||..+. .....+.. .+-+.|.+| -.||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g-~~~~~~~a-----------------~~gRHFyGH------g~fs 59 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG-QLLQRLWA-----------------PPGRHFYGH------GVFS 59 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC-ceeeEEcC-----------------CCCCEEecC------EEEc
Confidence 3455678889966646777777664 678998763 32222221 112233333 5799
Q ss_pred CCCCEEEEEEC-----CCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCEEEEEeC------------------CCe
Q 008939 309 TDGTYLATVGR-----DGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKYILTGGE------------------DDL 364 (548)
Q Consensus 309 p~g~~l~s~~~-----dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~------------------dg~ 364 (548)
+||++|++.-. .|.|-|||.. ..+.+..+..|.-.-..+.+.|||+.|+++.. +-.
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 99999998744 4889999998 56777788877767778999999988887631 223
Q ss_pred EEEEECCCceeEEe--c--cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe---EEeeeecC
Q 008939 365 VQVWSMEDRKVVAW--G--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE---IVVPLRRG 437 (548)
Q Consensus 365 I~vwd~~~~~~~~~--~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~---~~~~~~~~ 437 (548)
+...|..+++.+.. + ..|...|..+++.+ +| .++.+.+. .-.... ++...+.
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-------~G-------~V~~a~Q~------qg~~~~~~PLva~~~~- 198 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-------DG-------TVAFAMQY------QGDPGDAPPLVALHRR- 198 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecC-------CC-------cEEEEEec------CCCCCccCCeEEEEcC-
Confidence 55567777877765 4 23777899999988 77 34444331 111111 1111111
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCeEEEEeCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPG 514 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~I~iW~~~~ 514 (548)
+..+...+.+. .....-..-|-+|++++++ + +|+=.-+.+.+||..+
T Consensus 199 --------------------------g~~~~~~~~p~----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 199 --------------------------GGALRLLPAPE----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred --------------------------CCcceeccCCh----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 00011111110 0011224568899999974 4 4555889999999888
Q ss_pred CCccccCCCCcEEEec--CCCCceEeeecc
Q 008939 515 VAESQSSSSETVLSTS--SKDKPLLSSKVV 542 (548)
Q Consensus 515 ~~~~~~~~~~~v~~~s--~d~~~l~s~~~~ 542 (548)
+.......-..+..+. +++ +++++..+
T Consensus 249 g~~~~~~~l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 249 GRLLGSVPLPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCEeeccccCceeeeeecCCc-eEEeCCCc
Confidence 7755544444444333 333 56666554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-05 Score=72.25 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=84.3
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEE---------------EEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIF---------------ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~---------------vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
|.....++.+++...+|.++..-.+. +.-++....+++.-+..+...|..++|+|.. ..+|..
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~--~GLl~~ 211 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFN--EGLLGL 211 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccc--cceeee
Confidence 56666666666666555543221111 1222222244555555667789999999982 237889
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
++.+..|.|.|+++. .++.... ....+++++|.-+..+++..|...|.|+|||++......
T Consensus 212 asl~nkiki~dlet~------~~vssy~-------a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 212 ASLGNKIKIMDLETS------CVVSSYI-------AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred eccCceEEEEecccc------eeeehee-------ccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 999999999999972 2222111 247899999999999899999999999999999754433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-05 Score=71.07 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=115.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCC---CC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHN---SW 385 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~---~~ 385 (548)
++..+++++.++.|..||..+|+.+..... ...+.... ..++..++++..++.|..+|.++++.+... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 566788888999999999999999887764 33222222 223456677778889999999999987763 3221 11
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee--cCC--CCccccCCeeeec
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF--STG--SQSAHWDNVCPVG 461 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~d~~~~~g 461 (548)
........ ++ ..++.+..++.|..+|+++|+.+.......+.....+ ..+ +.....+..+.+.
T Consensus 113 ~~~~~~~~-------~~------~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 113 RSSSSPAV-------DG------DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp B--SEEEE-------ET------TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred ccccCceE-------ec------CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence 12222222 33 3677777799999999999999888876332211111 000 1111112345455
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeE-EEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSG-LIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~-l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
..+..+...|+.+.+.+.... ...+.. +....+.|+.++.|+.|..||+.+++
T Consensus 180 ~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 544443333777776554222 233333 33333467777799999999998865
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-07 Score=57.51 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=36.2
Q ss_pred ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 373 RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 373 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
++++..+++|...|++|+|+| ++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-------~~------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-------DG------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-------TS------SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-------cc------ccceeeCCCCEEEEEC
Confidence 467889999999999999999 87 7999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-07 Score=98.05 Aligned_cols=195 Identities=18% Similarity=0.155 Sum_probs=138.1
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC--Ce
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--DL 364 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--g~ 364 (548)
+...++..++.|+...+|++|+-+.++|+.|+..|.|++|++.+|........|..+|+-+.-+.||..+++.+.- -.
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 3456778888899999999999999999999999999999999999999999999999999999999877765543 35
Q ss_pred EEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-----C
Q 008939 365 VQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-----P 438 (548)
Q Consensus 365 I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-----~ 438 (548)
..+|++.. +...+.+.+ -.++.|+. .- +.+.+.+ .-....+||+.++..+.++-.+ .
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn-------~~----q~r~~gt--~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSN-------SL----QFRALGT--EADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhh-------hH----HHHHhcc--cccceEEEecccCcHHHHhcCcchhhhh
Confidence 78999865 455555543 34678864 21 1022333 3356889999999887764332 2
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
..+...|+|......||+. +||++..+.+..+......+. =.|+|++ ++.-++ |||+++-
T Consensus 1232 ~~n~a~FsP~D~LIlndGv-----------LWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLILNDGV-----------LWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred hccccccCCCcceEeeCce-----------eeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHH
Confidence 3456778888776666654 577777666655544432222 2478865 555443 6776653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00029 Score=67.74 Aligned_cols=246 Identities=20% Similarity=0.190 Sum_probs=138.9
Q ss_pred EEeCCCCCEEEEecC-----------CeEEEEEccCCCCCCeEEEecCCC-Cc------eEEEecCCCCCCceEEEEEcC
Q 008939 136 TNFDGKGTYIIFNVG-----------DAIFISDLNSQDKDPIKSIHFSNS-NP------VCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-----------d~v~vwd~~~~~~~~i~~~~~~~~-~~------~~~~~~p~~~~~~~l~~g~~d 197 (548)
+..+|+|+.+.+..- |.|.+||..+- .+...+...+. .. ...+++.+ ++++++.-..
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL--~~~~EI~iP~k~R~~~~~~~~~~~ls~d---gk~~~V~N~T 115 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL--SPTGEIEIPPKPRAQVVPYKNMFALSAD---GKFLYVQNFT 115 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT--EEEEEEEETTS-B--BS--GGGEEE-TT---SSEEEEEEES
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC--cccceEecCCcchheecccccceEEccC---CcEEEEEccC
Confidence 567899998875321 47999999984 47777765543 22 23345555 5555554332
Q ss_pred --CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 198 --GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 198 --g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
-.|.+.|+.. +++..... ... |...-|.++.-|.+-|.||.+.-..++..++.......
T Consensus 116 Pa~SVtVVDl~~------~kvv~ei~--------~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~--- 176 (342)
T PF06433_consen 116 PATSVTVVDLAA------KKVVGEID--------TPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK--- 176 (342)
T ss_dssp SSEEEEEEETTT------TEEEEEEE--------GTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE---
T ss_pred CCCeEEEEECCC------Cceeeeec--------CCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc---
Confidence 3466666664 44443332 222 33334555447899999999999999876654311110
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE--Eeeee----------cCC
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKS----------YYG 342 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~----------~~~ 342 (548)
.| .....+ +..-++...+..++..+.+|.|+-.|+...... ..+.- -.+
T Consensus 177 --~F----------------~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 177 --VF----------------DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp --ES----------------STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred --cc----------------CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 11 000111 122334444444555667777777777644321 11110 012
Q ss_pred ceEEEEEccCCCEEEEEeC---CC-------eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 343 ALLCCAWSMDGKYILTGGE---DD-------LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~---dg-------~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...-+++++..+.|++--. ++ .|-++|+.+++.+.++.. ..++.+|..+. |.. .+|.
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsq-------d~~-----P~L~ 305 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQ-------DDK-----PLLY 305 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEES-------SSS------EEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEcc-------CCC-----cEEE
Confidence 3445778876666555322 11 488889999999998873 34577888876 441 3454
Q ss_pred -EEeCCCeEEEEECCCCeEEeeeec
Q 008939 413 -SVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 413 -s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
....++.|.+||..+++.+..++.
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE--
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhc
Confidence 455689999999999999988875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0031 Score=64.17 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=85.8
Q ss_pred CCeEEEEECC-CCCEEEEE----ECCCe----EEEEeCCCCeEEEe---eeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 300 GSINSIAFST-DGTYLATV----GRDGY----LRVFDYSKEQLICG---GKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~----~~dg~----v~vwd~~~~~~~~~---~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
....++.|+. +...+.+. +.+|. -.+|++...++... --.....+.|++++|+.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4456778886 44555554 33444 34677765543211 1235678999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
||...+... +..+.-..+.++|+| +| ..+++|+.-|.|.+||+.-..+...+
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp-------~g------ai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHP-------DG------AIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcC-------CC------cEEEEEcCCceEEEEEeecCccceee
Confidence 999766322 223455678999999 98 78999999999999999876554443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0016 Score=61.96 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=129.0
Q ss_pred CceEEEecCCCCCCceEEEEEcCCc-EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGD-VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--- 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--- 250 (548)
....++.+|.. ...++.+-.-|+ ..+||.++. +.. ..... +.+ ...-=.-.|++||+ +|++.-
T Consensus 6 RgH~~a~~p~~--~~avafaRRPG~~~~v~D~~~g-----~~~-~~~~a-~~g---RHFyGHg~fs~dG~-~LytTEnd~ 72 (305)
T PF07433_consen 6 RGHGVAAHPTR--PEAVAFARRPGTFALVFDCRTG-----QLL-QRLWA-PPG---RHFYGHGVFSPDGR-LLYTTENDY 72 (305)
T ss_pred cccceeeCCCC--CeEEEEEeCCCcEEEEEEcCCC-----cee-eEEcC-CCC---CEEecCEEEcCCCC-EEEEecccc
Confidence 33445556642 345566666665 667887662 111 11111 111 01111357999999 677654
Q ss_pred --CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE----------
Q 008939 251 --ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---------- 318 (548)
Q Consensus 251 --~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---------- 318 (548)
..|.|-|||.... ...+..|..|.-....+.+.|||+.|+++.
T Consensus 73 ~~g~G~IgVyd~~~~-------------------------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 73 ETGRGVIGVYDAARG-------------------------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred CCCcEEEEEEECcCC-------------------------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 3589999999831 233555666666677888999998777762
Q ss_pred --------CCCeEEEEeCCCCeEEEe--e--eecCCceEEEEEccCCCEEEEEeCCC-------eEEEEECCCceeEEec
Q 008939 319 --------RDGYLRVFDYSKEQLICG--G--KSYYGALLCCAWSMDGKYILTGGEDD-------LVQVWSMEDRKVVAWG 379 (548)
Q Consensus 319 --------~dg~v~vwd~~~~~~~~~--~--~~~~~~v~~l~~spdg~~l~sgs~dg-------~I~vwd~~~~~~~~~~ 379 (548)
.+-.|...|..+|+++.. + .-|...|.-+++.++|..++..-..+ .|-+++.. +.+..+
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~ 205 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLL 205 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--Ccceec
Confidence 123566667778887766 3 23667899999999997655543322 24444433 222222
Q ss_pred c-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 E-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. .-...|-+|++++ +|. ...+|+=..+.+.+||..+++.+.....
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~-------~g~-----~ia~tsPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADR-------DGR-----LIAVTSPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred cCChHHHHhhCCceEEEEEeC-------CCC-----EEEEECCCCCEEEEEECCCCCEeecccc
Confidence 2 3457899999998 772 3445666789999999999998765443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00025 Score=73.59 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=75.4
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCC-----CeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCcee-----
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSK-----EQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKV----- 375 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~----- 375 (548)
+.++|++... .++.|.+.|.++ .+.+..+. -......++++|||+++++++. +..|.|.|+++.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457877665 367899999998 34554444 3455778999999998877665 89999999987542
Q ss_pred -------EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 376 -------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 376 -------~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.+.+- ...-...+|++ +| +...|.-.|.+|..||+..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg-------~G------~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDG-------RG------NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECC-------CC------CEEEeEeecceeEEEehHH
Confidence 333332 22233578887 77 6788888899999999986
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-06 Score=79.83 Aligned_cols=218 Identities=16% Similarity=0.076 Sum_probs=144.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|.+.|+.+.-.-. + ++.+++.||.++.|-...-. .-+-+..++.|.+.|.+++.+
T Consensus 8 hrd~i~hv~~tka-~-fiiqASlDGh~KFWkKs~is-----------------------GvEfVKhFraHL~~I~sl~~S 62 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-K-FIIQASLDGHKKFWKKSRIS-----------------------GVEFVKHFRAHLGVILSLAVS 62 (558)
T ss_pred ccceeeeEeeehh-h-eEEeeecchhhhhcCCCCcc-----------------------ceeehhhhHHHHHHHHhhhcc
Confidence 6777777655443 3 89999999999999754300 123455667788899999999
Q ss_pred CCCCEEEEEEC-CCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCC--EEEE-EeCCCeEEEEECCCce--eEEeccC
Q 008939 309 TDGTYLATVGR-DGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGK--YILT-GGEDDLVQVWSMEDRK--VVAWGEG 381 (548)
Q Consensus 309 p~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~--~l~s-gs~dg~I~vwd~~~~~--~~~~~~~ 381 (548)
-++.++.+... |..++++|++.-..+..++-.. ....++..++... .|++ .-.++.|.++|-.... ....-.-
T Consensus 63 ~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 63 YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 99999999777 9999999998766553333221 1122233333322 3333 3357899999976543 3344456
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeec
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g 461 (548)
|..+|.++.+.| -+ ..+++....|.|.-|.... ..+ . +...+.
T Consensus 143 H~sPV~~i~y~q-------a~------Ds~vSiD~~gmVEyWs~e~--~~q---f--Pr~~l~----------------- 185 (558)
T KOG0882|consen 143 HFSPVKKIRYNQ-------AG------DSAVSIDISGMVEYWSAEG--PFQ---F--PRTNLN----------------- 185 (558)
T ss_pred ccCceEEEEeec-------cc------cceeeccccceeEeecCCC--ccc---C--cccccc-----------------
Confidence 999999999998 66 5688888889999998763 111 0 001111
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|.++...-+..+.-.....+++.|+|++ +.+-+.|..||++.+.+++
T Consensus 186 --------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 186 --------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred --------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 1112222222222335567899999985 8888899999999988876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00029 Score=74.00 Aligned_cols=218 Identities=13% Similarity=0.139 Sum_probs=133.6
Q ss_pred EEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc-----EEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD-----VYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~-----I~iwdl~~~~ 209 (548)
-++++.+..++++..+ .|.+.+-. ...++.+...+..+...-|.-+ ....|++-..|++ |++|+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~- 102 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKV- 102 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccccc-
Confidence 4667788888887776 55555433 2233555544444222222222 1356666666654 899999873
Q ss_pred ccccc--ceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC--CCCCCCCcccccccceeeeecC
Q 008939 210 QDVGK--KLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 210 ~~~~~--~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+. .+... ..+.........++.+++.+.+-. .+|+|-.+|.|.++.=+- +...
T Consensus 103 -~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgs------------------ 162 (933)
T KOG2114|consen 103 -DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGS------------------ 162 (933)
T ss_pred -CCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhcccc------------------
Confidence 2222 12211 112212223678899999999877 899999999999985322 1111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
.+...+....+|++++|..+++.++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++ +.
T Consensus 163 ------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 163 ------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred ------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence 1111222348999999999888744444456799999984332 444677778899999987666455554 46
Q ss_pred eEEEEECCCceeEEecc-CCCCCe
Q 008939 364 LVQVWSMEDRKVVAWGE-GHNSWV 386 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~-~h~~~V 386 (548)
.|.+||.....+-..+. +|...+
T Consensus 236 ~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 236 FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred eEEEEcCCCcceeeeecCCCeEEE
Confidence 89999988655544444 555433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0017 Score=59.03 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=87.5
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
.++++|+..+.+.-.|..+ ++...... -..++.+-+.. -++ .++.|+..|.+++.+..++ ...+
T Consensus 24 T~v~igSHs~~~~avd~~s-----G~~~We~i--------lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tG-s~~w 87 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQS-----GNLIWEAI--------LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTG-SQIW 87 (354)
T ss_pred eEEEEecCCceEEEecCCC-----CcEEeehh--------hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecch-hhee
Confidence 4688888888887777655 23222211 23444444444 344 7999999999999999873 2222
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
.+... +.|. .....+++.++..++.|+.....|.++..++...+...+-..+-
T Consensus 88 ~f~~~--------------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 88 NFVIL--------------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred eeeeh--------------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 22211 1122 23346788999999999999999999999988876544444444
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEECCC
Q 008939 348 AWSM-DGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 348 ~~sp-dg~~l~sgs~dg~I~vwd~~~ 372 (548)
+..| ++ .|..+...|.|.--+.++
T Consensus 142 ~i~~g~~-sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 142 VIAPGDG-SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eecCCCc-eEEEEeccceEEEEccCC
Confidence 5556 44 344444455544444433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00029 Score=71.43 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=62.5
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
....|.+++++|+...|+.|..||.|.+||...+..... ...-....++|+|+|..+++|++.|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 357899999999999999999999999999987643322 23445788999999999999999999999998643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0002 Score=73.59 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=119.7
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
+..+..-+++.. ..+|+.|+..|.|++|+-..... ++ .+..+ ....+..+..+++.. ++|.|+..
T Consensus 33 ~~~v~lTc~dst---~~~l~~GsS~G~lyl~~R~~~~~---~~------~~~~~--~~~~~~~~~vs~~e~-lvAagt~~ 97 (726)
T KOG3621|consen 33 PARVKLTCVDAT---EEYLAMGSSAGSVYLYNRHTGEM---RK------LKNEG--ATGITCVRSVSSVEY-LVAAGTAS 97 (726)
T ss_pred cceEEEEEeecC---CceEEEecccceEEEEecCchhh---hc------ccccC--ccceEEEEEecchhH-hhhhhcCC
Confidence 334444444444 77999999999999998654210 11 11111 234555666777776 88889999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
|.|.++-+.........+-...+ +.|...|++++|++++..|++|...|.|..-.+....
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d--------------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCD--------------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred ceEEeehhhccCCCcceeecccc--------------------ccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 99999998873322221111100 1167899999999999999999999999988887621
Q ss_pred E----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC--eEEEEEecCCCCCCCCCCccc
Q 008939 333 L----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW--VSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 333 ~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~dg~~~~ 406 (548)
. ...+-...+.|.-+.+. ++ +|++.+- -...+++++.....+.-+...+. -.+.+|-|.. .+ .
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl-~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~-----~~---~ 226 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTL-TRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQ-----CK---A 226 (726)
T ss_pred hhccccceeeccCcceEEeecc-cc-eehHhhh-hhhheeecchhHHHHhcCCCcCCccccceEEeecc-----cc---C
Confidence 1 11222234556555554 23 3333322 23455666544322222212222 2455666510 10 0
Q ss_pred eeEEEEEEeCCCeEEEEECCC-CeEEeeee
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM-DEIVVPLR 435 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~-~~~~~~~~ 435 (548)
. .-.+.|+.-| .|+|..+- |+..++..
T Consensus 227 q-~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 227 Q-KPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred C-CceEEEecCC-CceEEeecceeEEEeee
Confidence 1 2233344433 68887663 45544443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00031 Score=70.14 Aligned_cols=233 Identities=12% Similarity=0.174 Sum_probs=142.4
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC-----cEEEEEeeecc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYSVSLRQQL 209 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~iwdl~~~~ 209 (548)
-..|+.|++++|--..+.|.||+..+ ..++..-......|....|+|. +.+|+.-...- .+.+..+..
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtps--f~lld~Kslki~gIr~FswsP~---~~llAYwtpe~~~~parvtL~evPs-- 382 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPS--FMLLDKKSLKISGIRDFSWSPT---SNLLAYWTPETNNIPARVTLMEVPS-- 382 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCc--eeeecccccCCccccCcccCCC---cceEEEEcccccCCcceEEEEecCc--
Confidence 46899999999998889999999876 4455555556678888888887 55555443221 244444332
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE----------eCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG----------HADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~----------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.+.+. . ...+.-.=..+.|..+|+ +|++- +.-.++.|+.++..
T Consensus 383 ---~~~iR-t------~nlfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireK---------------- 435 (698)
T KOG2314|consen 383 ---KREIR-T------KNLFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREK---------------- 435 (698)
T ss_pred ---cceee-e------ccceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEEEEeecc----------------
Confidence 11111 1 111233334567777777 55431 11224555555531
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCC----eEEEeeeecCCceEEEEEccC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKE----QLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~v~vwd~~~~----~~~~~~~~~~~~v~~l~~spd 352 (548)
.-|+..+.. ...|..++|-|.|..+++-+. ..++.+|-+++. +++..+.. ...+.+.|+|.
T Consensus 436 ---------dIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk 503 (698)
T KOG2314|consen 436 ---------DIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK 503 (698)
T ss_pred ---------CCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC
Confidence 122222222 267889999999988776543 357888888732 23333332 45678999999
Q ss_pred CCEEEEE---eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEE
Q 008939 353 GKYILTG---GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLW 423 (548)
Q Consensus 353 g~~l~sg---s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lw 423 (548)
|++++.+ +..|.+.++|+.-..+...-...-...+.+.|+| .| +++++++. |.--+||
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-------tG------RYvvT~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-------TG------RYVVTSSSSWRHKVDNGYRIF 570 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-------CC------CEEEEeeehhhhccccceEEE
Confidence 9998775 4578999999985333222222223457799999 88 78888764 4445566
Q ss_pred ECC
Q 008939 424 DLE 426 (548)
Q Consensus 424 d~~ 426 (548)
+++
T Consensus 571 tfq 573 (698)
T KOG2314|consen 571 TFQ 573 (698)
T ss_pred Eee
Confidence 654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-05 Score=80.46 Aligned_cols=180 Identities=17% Similarity=0.265 Sum_probs=130.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..++.|+-...+..+|+++. +...... .....|+-|+. ++. ++.+|...|+|.+-|.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~------~e~r~~~------v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s----- 206 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE------KETRTTN------VSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNS----- 206 (1118)
T ss_pred Ccceeecchhhheeeeecccc------eeeeeee------ccCCceEEEEe--cCc-EEEeecccceEEeecCCc-----
Confidence 446788888888888998862 1111111 12223444443 445 899999999999999986
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---------CCeEEEEeCCCCeEEEeee
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---------DGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---------dg~v~vwd~~~~~~~~~~~ 338 (548)
..+++.+..|++.|.++.. .|++|++++. |..|+|||++..+.+.-+.
T Consensus 207 ---------------------~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 207 ---------------------FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ---------------------Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5678999999999987765 6788888863 6678999999888776666
Q ss_pred ecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC---CCce-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 339 SYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM---EDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 339 ~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~---~~~~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
-+.++ .-+.|+|.- ..+++++..|...+.|. .+.. -+..+..-.+.+..+++++ +| ..|+.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-------n~------~alaf 329 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-------NG------DALAF 329 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-------CC------ceEEE
Confidence 55544 456777753 46888999999999993 3321 2223333455699999998 88 68999
Q ss_pred EeCCCeEEEEE
Q 008939 414 VGQDTRLLLWD 424 (548)
Q Consensus 414 ~~~Dg~i~lwd 424 (548)
+..+|.|.+|-
T Consensus 330 gd~~g~v~~wa 340 (1118)
T KOG1275|consen 330 GDHEGHVNLWA 340 (1118)
T ss_pred ecccCcEeeec
Confidence 99999999997
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00066 Score=74.01 Aligned_cols=210 Identities=17% Similarity=0.304 Sum_probs=128.3
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee---
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR--- 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~--- 206 (548)
..|..+.|-.+...++..... .|.+-|.++. .+..+-...+.|.+.+|+|+ ...++..+..++|.+.+-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg~vd~GI~aaswS~D---ee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVGNVDNGISAASWSPD---EELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc---ceeeeeeccCceEEEeecCC---CcEEEEEeCCcEEEEEeccccc
Confidence 567788888888777775544 6666677754 34444445679999999999 7788888888887765431
Q ss_pred ---ecc-cccc--cceee------eeeecc-CC------cc----------cCcceEEEEEecCCCcEEEEEe----CC-
Q 008939 207 ---QQL-QDVG--KKLVG------AHHYNK-DG------SV----------NNSRCTSVTWVPGGDGAFVVGH----AD- 252 (548)
Q Consensus 207 ---~~~-~~~~--~~~~~------~~~~~~-~~------~~----------~~~~v~~l~~~p~~~~~l~s~~----~d- 252 (548)
.++ .+.. .+.+. ...|.- .+ .. ..+.=+.|.|--||+ +|++.. .+
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGT 221 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCc
Confidence 011 0000 00000 000000 00 00 111224599999999 888732 23
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCC
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYS 329 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~ 329 (548)
..|+|||-+ +.....-.+. .+.=.+++|-|.|.++++.. .|+.|.+|.-+
T Consensus 222 RkirV~drE--g~Lns~se~~-------------------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 222 RKIRVYDRE--GALNSTSEPV-------------------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred eeEEEeccc--chhhcccCcc-------------------------cccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 789999976 2222111111 13345799999999998864 45678888753
Q ss_pred ---CCeEEEeeeecCCceEEEEEccCCCEEEE---EeCCCeEEEEECCCce
Q 008939 330 ---KEQLICGGKSYYGALLCCAWSMDGKYILT---GGEDDLVQVWSMEDRK 374 (548)
Q Consensus 330 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s---gs~dg~I~vwd~~~~~ 374 (548)
.++....+......+..++|+.++..|++ ......|++|-+.+..
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 23333333334445899999999999988 5566679999887753
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00027 Score=73.64 Aligned_cols=176 Identities=20% Similarity=0.296 Sum_probs=119.2
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+++++++..+ .|++.+.+.. + .....+... + .+|.++++|+.||.|.|-.+-+. +... ..
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~---~~Gey~asCS~DGkv~I~sl~~~-----~~~~-~~ 109 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------I---LEGEYVASCSDDGKVVIGSLFTD-----DEIT-QY 109 (846)
T ss_pred cceeeeccccceEEEEecCCc---c-ccccccccc------c---cCCceEEEecCCCcEEEeeccCC-----ccce-eE
Confidence 5788888887 9999998752 2 222112211 1 23889999999999999887661 2111 11
Q ss_pred eeccCCcccCcceEEEEEecC----CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 221 HYNKDGSVNNSRCTSVTWVPG----GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~----~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
. ...++.+|+++|+ ....+++|+.-| +.++.-+.-+.. ..+ .++
T Consensus 110 d-------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-----------------------~~v-~l~ 157 (846)
T KOG2066|consen 110 D-------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-----------------------DSV-VLS 157 (846)
T ss_pred e-------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-----------------------cce-eee
Confidence 1 3678899999998 123799999988 888876542211 111 344
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc------eEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA------LLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~------v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.-.|+|.++.|. |+++|.++.+| |+|||..+++.+..++..... -..+.|.++. .|+.|- ..+|+|..+
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I 232 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSI 232 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEE
Confidence 456999999995 67999998777 999999998887665543332 2346777664 567774 458999988
Q ss_pred CCc
Q 008939 371 EDR 373 (548)
Q Consensus 371 ~~~ 373 (548)
+.+
T Consensus 233 ~~~ 235 (846)
T KOG2066|consen 233 KKR 235 (846)
T ss_pred ecc
Confidence 843
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00023 Score=68.30 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=135.2
Q ss_pred ccCCCCCCceeEEeCCCCC-EEEEec-CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 125 GASSSSTSMTNTNFDGKGT-YIIFNV-GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~-~l~~~~-~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-..+|+..|..++|+|... ++..++ ++.|.|.|+++.. .+.....+ ..+++.+|+-++ .+.|+.|..+|.|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde--~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDE--RHVIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCC--cceeEEeccCceEEE
Confidence 3445677888999999877 444444 5599999999744 55555544 799999999985 679999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW------VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
||++...... ..+.... ...+|..|+. .+.+. +|+....+ +..|++..............
T Consensus 263 yD~R~~~~~~-~e~~a~~--------t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele-- 328 (463)
T KOG1645|consen 263 YDMRQPEGPL-MELVANV--------TINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELE-- 328 (463)
T ss_pred EEccCCCchH-hhhhhhh--------ccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccC--
Confidence 9999732111 1111101 1223333333 23343 44444443 55666543221111100000
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-------CeEE-EEeCCCCeEEEeee-ecCC-c---
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-------GYLR-VFDYSKEQLICGGK-SYYG-A--- 343 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-------g~v~-vwd~~~~~~~~~~~-~~~~-~--- 343 (548)
..+.+.++.+++-.+.++..... ..+- --|..+|-.++..+ .+.+ .
T Consensus 329 ---------------------~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~k 387 (463)
T KOG1645|consen 329 ---------------------PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTK 387 (463)
T ss_pred ---------------------CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccc
Confidence 01445556666533433333221 0011 11223343333221 1211 0
Q ss_pred ---eEEEEEccCCCEEE-EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 008939 344 ---LLCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419 (548)
Q Consensus 344 ---v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~ 419 (548)
-..+.-.++.++|+ +|..-+.+.+||..+.+.++++. -+.+|..++.... +|. .+|+. -.|..
T Consensus 388 l~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~------n~~-----syLa~-LTd~~ 454 (463)
T KOG1645|consen 388 LSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDT------NGS-----SYLAL-LTDDR 454 (463)
T ss_pred cccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeec------CCc-----chhhh-eecce
Confidence 01122234555544 35556789999999999999987 4578888776431 331 24443 34667
Q ss_pred EEEEECC
Q 008939 420 LLLWDLE 426 (548)
Q Consensus 420 i~lwd~~ 426 (548)
++|+..+
T Consensus 455 v~Iyk~e 461 (463)
T KOG1645|consen 455 VHIYKNE 461 (463)
T ss_pred EEEEecC
Confidence 7777543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=76.49 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=110.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
....++|++++.. .|+-|.-+|.|++++..-. .... ..|... .
T Consensus 38 ~~D~is~~av~~~---~~~~GtH~g~v~~~~~~~~--~~~~--------------------------~~~s~~------~ 80 (846)
T KOG2066|consen 38 QNDAISCCAVHDK---FFALGTHRGAVYLTTCQGN--PKTN--------------------------FDHSSS------I 80 (846)
T ss_pred hhhHHHHHHhhcc---eeeeccccceEEEEecCCc--cccc--------------------------cccccc------c
Confidence 4667788887643 7999999999999997641 1100 011111 4
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC-----CCEEEEEeCCCeEEEEECCC---ceeEEecc
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD-----GKYILTGGEDDLVQVWSMED---RKVVAWGE 380 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~sgs~dg~I~vwd~~~---~~~~~~~~ 380 (548)
.+|.++++|+.||.|.|..+-+.+..+++. ...++.+++++|| .+.+++|+.-| +.++.-+- ...+ .+.
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 579999999999999999998888777665 4578999999998 45789999888 66664321 1122 345
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.-.++|.++.|. | .+|+-+..+| |++||+.+++.+..++.
T Consensus 158 ~~eG~I~~i~W~---------g------~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 158 EGEGPIHSIKWR---------G------NLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred cCccceEEEEec---------C------cEEEEecCCC-cEEEeccccceeeccCC
Confidence 567899999994 4 5677666555 99999999888766654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-05 Score=78.65 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=122.2
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++..++.|+....+..+|+++.+......-..+.|.- +..+++++.+|...|.|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456777887788999999988877665544444443 44578899999999999999999999999999999999988
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeC---------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQ---------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~---------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
.. .| ++|++||. |.-|++||+++-+.+..+.......-+.|.|.= ...+.+
T Consensus 224 Dv---------~G------NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl-----~t~~~V 283 (1118)
T KOG1275|consen 224 DV---------QG------NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL-----TTRLAV 283 (1118)
T ss_pred ec---------cC------CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc-----cceEEE
Confidence 87 44 68888874 556899999998877776653222222232221 112222
Q ss_pred cccCCCCceeecCCC-Cc-eEEee--cCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 461 GTLQPAPSMRDVPKL-SP-LVAHR--VHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 461 g~~~~~~~~~d~~~~-~~-~~~~~--~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
.+..+...+-|.... .| ...+. .....+..+.++++ .++-+-.+|.|.+|.
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 222222223331111 11 11222 22344888999986 499999999999998
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0034 Score=63.03 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=101.0
Q ss_pred CCCCCEEEEe----------cCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 139 DGKGTYIIFN----------VGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 139 ~~~g~~l~~~----------~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
|||++++++. ....+.|+|++++. +..+.-.........|+|+ ++.++.. .++.|+++++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~---g~~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPD---GKYIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SS---STEEEEE-ETTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecC---CCeeEEE-ecCceEEEECCCC
Confidence 5788888873 23368899999744 3333323567889999999 6666655 4679999987542
Q ss_pred ccccccceeeee---------eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 209 LQDVGKKLVGAH---------HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 209 ~~~~~~~~~~~~---------~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
....+.... .+.-+.+ .-+.-..+-|+||++.++..--.+..|..+.+.........+
T Consensus 74 ---~~~~lT~dg~~~i~nG~~dwvyeEE-v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~y--------- 140 (353)
T PF00930_consen 74 ---QETQLTTDGEPGIYNGVPDWVYEEE-VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQY--------- 140 (353)
T ss_dssp ---EEEESES--TTTEEESB--HHHHHH-TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS---------
T ss_pred ---CeEEeccccceeEEcCccceecccc-ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccC---------
Confidence 001111000 0000000 022346789999999544445566666666654311100000
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE-ee----eecCCceEEEEEccCCC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GG----KSYYGALLCCAWSMDGK 354 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~-~~----~~~~~~v~~l~~spdg~ 354 (548)
-.+..+.+-.-|.-.... .|.|+|+.+++... .. ..-...+..+.|.++++
T Consensus 141 --------------------p~~~~~~YPk~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 141 --------------------PEVESIRYPKAGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp ---------------------EEEEEE--BTTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred --------------------CcccccccCCCCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 124445543233322222 47888998876532 11 22345788999999998
Q ss_pred EEEE--EeCC---CeEEEEECCCcee
Q 008939 355 YILT--GGED---DLVQVWSMEDRKV 375 (548)
Q Consensus 355 ~l~s--gs~d---g~I~vwd~~~~~~ 375 (548)
.|+. ...+ -.+.++|..+++.
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred EEEEEEcccCCCEEEEEEEECCCCce
Confidence 4443 3333 2477778877644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-06 Score=87.11 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=131.7
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe----
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---- 250 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---- 250 (548)
.+.|+++.-+.. ...+++|..+|.|.+-.++..- +.....+ ..+...|++++|++-+.+.||+|.
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~h-dSs~E~t---------p~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPH-DSSAEVT---------PGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcc-cccceec---------ccccccccccccccccHHHHHhhhhhhc
Confidence 566777766532 4578999999999999887621 1111111 126789999999997665788775
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|-.+.|||+.+.-. .+.. ...|.. .-.....+++|-.+.+++.+|.....+.++|++.
T Consensus 127 nds~~~Iwdi~s~lt-----vPke-~~~fs~---------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLT-----VPKE-SPLFSS---------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred ccCCccceecccccC-----CCcc-cccccc---------------ccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 367899999976211 0000 000000 0113455888888899999999999999999983
Q ss_pred CeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEE-CCCc-eeEEeccCCC----CCeEEEEEecCCCCCCCCCC
Q 008939 331 EQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWS-MEDR-KVVAWGEGHN----SWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd-~~~~-~~~~~~~~h~----~~V~~v~~~p~~~~~~~dg~ 403 (548)
.. .....-.+..+..+...| .+.++++-. |+.|.+|| .++- .++..+...+ ..+..++|+|. ..|
T Consensus 186 s~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt-----rtg- 257 (783)
T KOG1008|consen 186 SL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT-----RTG- 257 (783)
T ss_pred hh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC-----Ccc-
Confidence 22 111111233456677788 666776665 99999999 3332 2333333222 24899999982 133
Q ss_pred ccceeEEEEEEeCC-CeEEEEECCC
Q 008939 404 AETVMYRFGSVGQD-TRLLLWDLEM 427 (548)
Q Consensus 404 ~~~~~~~l~s~~~D-g~i~lwd~~~ 427 (548)
++++...| +.|+++|+..
T Consensus 258 ------lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 ------LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ------hhhhhccCcceEEEecccc
Confidence 56666655 7899999863
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0057 Score=61.76 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=89.5
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-CCccccc------------ccceeeeecCCC----CCCCCeeE
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD-SSFPVIK------------DQTQFSVAHPRY----SKSNPIAR 294 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~----~~~~~~~~ 294 (548)
.|+.+.|.++.. .|++|...|.|.||......... ...+... ...-..+.+... ....|...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999987 89999999999999886533221 1111000 011111111110 12456777
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--e------cCCceEEEEEcc-----CC---CEEEE
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--S------YYGALLCCAWSM-----DG---KYILT 358 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~------~~~~v~~l~~sp-----dg---~~l~s 358 (548)
++..+++|++++.|.= -++|.|..+|.|.|.|++....+..-. . ....++++.|.- |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 7888999999999744 499999999999999998877776522 1 234677888863 33 36889
Q ss_pred EeCCCeEEEEECC--C-ce----eEEeccCCCCCeEEEE
Q 008939 359 GGEDDLVQVWSME--D-RK----VVAWGEGHNSWVSGVA 390 (548)
Q Consensus 359 gs~dg~I~vwd~~--~-~~----~~~~~~~h~~~V~~v~ 390 (548)
|.+.|.+.+|.+. . +. .......+.+.|..|.
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~ 199 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII 199 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence 9999999999874 1 21 1222224566666655
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0014 Score=69.06 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=98.3
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEE
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLA 315 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~ 315 (548)
+|++.+. .++.|+.+|.|.+++-.- ..++.|+.+... |..+....+..+|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~---------------------------~~~~~fqa~~~siv~~L~~~~~~~~L~ 81 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF---------------------------QLIRGFQAYEQSIVQFLYILNKQNFLF 81 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc---------------------------eeeehheecchhhhhHhhcccCceEEE
Confidence 3566666 899999999998887542 234556666666 43343333446788
Q ss_pred EEECCC-----eEEEEeCCCC------eEEE--eeee-----cCCceEEEEEccCCCEEEEEeCCCeEEEEECC---C-c
Q 008939 316 TVGRDG-----YLRVFDYSKE------QLIC--GGKS-----YYGALLCCAWSMDGKYILTGGEDDLVQVWSME---D-R 373 (548)
Q Consensus 316 s~~~dg-----~v~vwd~~~~------~~~~--~~~~-----~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~---~-~ 373 (548)
+.+.|+ .|+|||++.- +++. .+.. ...++.+++.+.+-+.+|+|-.||.|..+.-+ + +
T Consensus 82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 877765 4899999632 2331 1111 24578899999999999999999999998532 1 1
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
....-...-..+|+++.|.. |+ ..++-+.....|.+|.+..
T Consensus 162 sr~~~~~~~~~pITgL~~~~-------d~------~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRS-------DG------KSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred cceeeeccCCCCceeeEEec-------CC------ceeEEEEecceeEEEEecC
Confidence 12222223568999999987 77 2323333346788888873
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-06 Score=85.17 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
...+.|+++.-+.+ .++++|..+|.|-+-.++....... .....|...+++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------E~tp~~ar~Ct~lAwn 111 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------EVTPGYARPCTSLAWN 111 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------eecccccccccccccc
Confidence 34566777765443 4899999999999998876332211 1112344789999999
Q ss_pred C-CCCEEEEEE----CCCeEEEEeCCCCe--EE--Eeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 309 T-DGTYLATVG----RDGYLRVFDYSKEQ--LI--CGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 309 p-~g~~l~s~~----~dg~v~vwd~~~~~--~~--~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
+ |.+.||.|- .|..+.|||+.++- +. ..+.+ ......+++|..+.+++.+|.....++++|++..... .
T Consensus 112 eLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~ 190 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-V 190 (783)
T ss_pred cccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-h
Confidence 8 777888774 35679999998761 11 11222 3345668899999999999999999999999843211 1
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
..-.+..|..+..+|+ .+ .++++-. |+.|-+||.
T Consensus 191 ~svnTk~vqG~tVdp~------~~------nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPF------SP------NYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhhhhhcccceecCC------CC------Cceeccc-cCceeeccc
Confidence 1113445667777774 33 3666555 999999993
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.012 Score=60.18 Aligned_cols=207 Identities=15% Similarity=0.131 Sum_probs=110.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.|+||+... +++.++.+....+.++.|+.+ ..|++-..||.++++|+.... ... ...-.....+...
T Consensus 62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~~----e~LvvV~~dG~v~vy~~~G~~-----~fs-l~~~i~~~~v~e~ 128 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTDD----EELVVVQSDGTVRVYDLFGEF-----QFS-LGEEIEEEKVLEC 128 (410)
T ss_pred EEEEECCCC---CEeEEEEECCCCEEEEEECCC----CeEEEEEcCCEEEEEeCCCce-----eec-hhhhccccCcccc
Confidence 489999874 488999998899999999875 357888899999999986421 000 0000001111222
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.+....+..+| +++ -..++.+++.+-.........++... .. ......+.....-..++.+.
T Consensus 129 ~i~~~~~~~~G--ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p--~~-------------~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 129 RIFAIWFYKNG--IVV-LTGNNRFYVVNNIDEPVKLRRLPEIP--GL-------------WTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred cccccccCCCC--EEE-ECCCCeEEEEeCccccchhhccccCC--Cc-------------ccccccccccccceEeecCc
Confidence 33333333344 233 23455555543222110000111000 00 00000000000003344455
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVA 390 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~ 390 (548)
...+....++.+.+.+-...+. +. ..+++..++.||++++||.-..+|.+.+.+.+-.+.+..+.-. .....++.
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 5555555556666444332211 22 2467999999999999999999999999987666666555432 23445666
Q ss_pred Eec
Q 008939 391 FDS 393 (548)
Q Consensus 391 ~~p 393 (548)
|+-
T Consensus 267 WCG 269 (410)
T PF04841_consen 267 WCG 269 (410)
T ss_pred EEC
Confidence 643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.033 Score=58.56 Aligned_cols=291 Identities=11% Similarity=0.059 Sum_probs=145.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce--EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC--TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
+..++++..++.|+-+|.++ ++.+.....-..... ....+ ..+... ++. .++.++.+|.|+.+|.++ ++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-----G~~~W~~~~~~~~~~-~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~T-G~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-----GKVLWRYDPKLPADR-GCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAET-GK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-----ChhhceeCCCCCccc-cccccccCCcEEc-cCC-eEEEecCCCeEEEEECCC-CC
Confidence 44678888889999999876 333322110000000 00000 011111 213 688888999999999887 44
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEE---------CCCeEEEEeCCCCeEE
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST--DGTYLATVG---------RDGYLRVFDYSKEQLI 334 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~---------~dg~v~vwd~~~~~~~ 334 (548)
....+....... .-..+.-+| .+.+++.++ .++.|..+|..+++.+
T Consensus 132 ~~W~~~~~~~~~-----------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 132 QVWKFGNNDQVP-----------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred EeeeecCCCCcC-----------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 333332111000 000011111 123444443 3688999999999988
Q ss_pred EeeeecCCc--------------------e-EEEEEccCCCEEEEEeCCC------------------eEEEEECCCcee
Q 008939 335 CGGKSYYGA--------------------L-LCCAWSMDGKYILTGGEDD------------------LVQVWSMEDRKV 375 (548)
Q Consensus 335 ~~~~~~~~~--------------------v-~~l~~spdg~~l~sgs~dg------------------~I~vwd~~~~~~ 375 (548)
..++..... + ...++.+.+..++.++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776542110 0 1234444566788887665 688999999988
Q ss_pred EEecc--CCCCCe----EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC----CCcee
Q 008939 376 VAWGE--GHNSWV----SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG----GSPTF 445 (548)
Q Consensus 376 ~~~~~--~h~~~V----~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~----~~~~~ 445 (548)
+-.++ .|..+. ....+.+. ...+|. ....++.++.+|.+...|.++|+.+...+..... ....+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~---~~~~g~---~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vy 342 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADI---KPKDGK---PVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVY 342 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEec---cccCCC---eeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEE
Confidence 76654 222111 00111100 000331 1136777888999999999999998876542000 01111
Q ss_pred cCCCCc--cccC--CeeeecccCCCCceeecCCCCceEEeecCC--------CCe--eEEEEeCCeEEEEECCCeEEEEe
Q 008939 446 STGSQS--AHWD--NVCPVGTLQPAPSMRDVPKLSPLVAHRVHT--------EPL--SGLIFTQESVLTVCREGHIKIWM 511 (548)
Q Consensus 446 ~~~~~~--~~~d--~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~--------~~V--~~l~fspd~l~t~s~Dg~I~iW~ 511 (548)
...... ...+ ........++.+...|+.+.+.+-...... .+. ..+....+.|+.++.||.|+.+|
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 110000 0000 000000112233344555554443333210 111 12344556788889999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
..+++
T Consensus 423 ~~tG~ 427 (488)
T cd00216 423 ATTGK 427 (488)
T ss_pred CCCCc
Confidence 88776
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0061 Score=57.13 Aligned_cols=218 Identities=11% Similarity=0.153 Sum_probs=109.9
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+-...+..++|+|+...|++-.+. .|...+++ + +.++.+.+.. ...-.+++.-+ +.++++--.++.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~---~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGN---GRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-ST---TEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECC---CEEEEEEcCCCcEEE
Confidence 33444557889999987766554444 77666764 2 4788888765 45777888655 555555445889999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+++..........-......... ..++..+-.++|.|.++ .|+++-...-..+|.++..... ..+..... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~-~----- 161 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGG-FDLFVSDD-Q----- 161 (248)
T ss_dssp EEE----TT--EEEEEEEE---S----SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-S-S--EEEE--H-----
T ss_pred EEEeccccccchhhceEEecccc-cCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCc-cceeeccc-c-----
Confidence 99854211111111111111111 12466789999999988 5556666666777776541100 00000000 0
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC---------CceEEEEEccC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---------GALLCCAWSMD 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---------~~v~~l~~spd 352 (548)
.+..-......+.+++++| .+++++.......|..+| .+|+.+..+.-.. ...-.|+|.++
T Consensus 162 --------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 162 --------DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp --------HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred --------ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 0000011124578899999 566777777888899999 5577655443221 24678999999
Q ss_pred CCEEEEEeCCCeEEEE
Q 008939 353 GKYILTGGEDDLVQVW 368 (548)
Q Consensus 353 g~~l~sgs~dg~I~vw 368 (548)
|++.++ ++-+..+++
T Consensus 233 G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 233 GNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEE-ETTTEEEEE
T ss_pred CCEEEE-cCCceEEEe
Confidence 965444 466655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0051 Score=63.61 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=85.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
|...+..-+++..+++++.++.. .|++|+-..+... .....+....+.....+++ ..++++|+..|.|.++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~---e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSV---EYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecch---hHhhhhhcCCceEEeehhhc
Confidence 45556677888899999998876 9999997764321 1222223334444556666 56788999999999998765
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
.. ...... +.+....|+..|++++|++++. .|++|...|+|.+-.++.
T Consensus 108 ~~-p~~~~~-----~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 EL-PRDLDY-----VTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cC-CCccee-----eccccccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 21 111111 1122223899999999999999 899999999999988876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=65.78 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=108.2
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeeecccccccceeeeeeeccCCcccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN 230 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (548)
.+++-|.+. .....+......+..-+|+|+++.-.++..-... ..|+++|+... ....+.. ..
T Consensus 174 ~l~~~D~dg---~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~----------~~ 237 (425)
T COG0823 174 ELALGDYDG---YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILN----------FN 237 (425)
T ss_pred eEEEEccCC---cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeec----------cC
Confidence 445555442 1233333344566667888885432223222333 35999998872 1222221 13
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
..-..-+|+|||+.++++...||...||-++..+.....+. .-.+.-..-.|+||
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-------------------------~~~gi~~~Ps~spd 292 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-------------------------NGFGINTSPSWSPD 292 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc-------------------------cCCccccCccCCCC
Confidence 34456689999997778888888766555443332211111 01122225679999
Q ss_pred CCEEEEEEC-CCe--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-Ce--EEEEECCCceeEEeccCCCC
Q 008939 311 GTYLATVGR-DGY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-DL--VQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 311 g~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g~--I~vwd~~~~~~~~~~~~h~~ 384 (548)
|++|+..+. .|. |.++|.+.+... .+....+.-..-.|+|||++|+..+.. |. |.+.|+.++..+..+. +..
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~ 370 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STY 370 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccc
Confidence 998887754 344 556666655442 222222222377899999998877643 33 6667776655333333 233
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
....-.|.|
T Consensus 371 ~~e~ps~~~ 379 (425)
T COG0823 371 LNESPSWAP 379 (425)
T ss_pred cCCCCCcCC
Confidence 333344555
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=73.33 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceE-EEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL-CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
..|.-+.|+|.-.++|++..+|.|.++.+. .+.+.++.-+...++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 567889999999999999999999999998 777888876766777 999999999999999999999999999887765
Q ss_pred c-cCCCCCeEEEEEec
Q 008939 379 G-EGHNSWVSGVAFDS 393 (548)
Q Consensus 379 ~-~~h~~~V~~v~~~p 393 (548)
+ ..-...|.++.|.|
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22556788888864
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0017 Score=69.98 Aligned_cols=150 Identities=18% Similarity=0.393 Sum_probs=99.9
Q ss_pred CCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC----CCceEEEEEcCCcEEEEEeeecccccc
Q 008939 140 GKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK----DGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 140 ~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~----~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
.+-..|+....+ .|+-.|++.+. .|....++...+ ...|.|+.+ .....++|..+..|+.||.|-. +
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----~ 563 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGK--VVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----G 563 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCc--EEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCC----C
Confidence 344445554433 88888998865 888888776543 556666644 2456789999999999999852 1
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCee
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (548)
.+++... .+.. ..+...+|++=..+| .||+|+.+|.||+||-- +.+....++.+
T Consensus 564 ~k~v~~~--~k~Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~l-------------------- 617 (794)
T PF08553_consen 564 NKLVDSQ--SKQY-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGL-------------------- 617 (794)
T ss_pred Cceeecc--cccc-ccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCC--------------------
Confidence 2332111 0111 245567888877777 69999999999999942 22222233322
Q ss_pred EeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 294 ~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
..+|.+|+.+.||++|+..+ +..|.+++.
T Consensus 618 -----G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 618 -----GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred -----CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 27899999999999887665 557777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00031 Score=73.40 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=86.9
Q ss_pred EEEEEecCCCcEEEEEe----CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 234 TSVTWVPGGDGAFVVGH----ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
+-..|+|..+ +|++++ ..|.|.||--.-+......+| -.+++++|+|
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGEPqr~Vt~P----------------------------~hatSLCWHp 69 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGEPQRDVTYP----------------------------VHATSLCWHP 69 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCCCCcccccc----------------------------eehhhhccCh
Confidence 4567999999 888876 358888885432211111121 2255799999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
..-.|+.+-.-|.+.+|...+.+.-.....|..+|..+.||++|..|+++..-|.|.+|.....
T Consensus 70 e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 70 EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 9888999999999999999877766666779999999999999999999999999999988743
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.025 Score=57.10 Aligned_cols=231 Identities=15% Similarity=0.112 Sum_probs=118.6
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc------c--------------cceeeeee-eccC--------
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV------G--------------KKLVGAHH-YNKD-------- 225 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~------~--------------~~~~~~~~-~~~~-------- 225 (548)
.|+.+.|.++ ...|++|..+|+|.+|......... . ..+....+ ..+.
T Consensus 3 ~v~~vs~a~~---t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFAPE---TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEETT---TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEecCC---CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 4678888888 5569999999999998876531111 0 00000000 0000
Q ss_pred --CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE
Q 008939 226 --GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN 303 (548)
Q Consensus 226 --~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 303 (548)
.....++|++++.+.-| ++++|+.+|.+.|.|++.. ..... ..+.+ ...-......|+
T Consensus 80 ~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP-avI~~-~~i~~----------------~~~~~~~~~~vt 139 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP-AVIYN-ENIRE----------------SFLSKSSSSYVT 139 (395)
T ss_dssp EEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT-EEEEE-EEGGG------------------T-SS----EE
T ss_pred hheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC-eEEee-ccccc----------------cccccccccCee
Confidence 01247899999998766 7999999999999999742 11111 00000 000001124577
Q ss_pred EEEECC-----CC---CEEEEEECCCeEEEEeCC--C-CeE----EEeeeecCCceEEEE-EccC---------------
Q 008939 304 SIAFST-----DG---TYLATVGRDGYLRVFDYS--K-EQL----ICGGKSYYGALLCCA-WSMD--------------- 352 (548)
Q Consensus 304 ~~~~sp-----~g---~~l~s~~~dg~v~vwd~~--~-~~~----~~~~~~~~~~v~~l~-~spd--------------- 352 (548)
++.|.- |+ -.|++|+..|.+.+|.+. . +.. ......+.+.|..+. ++.+
T Consensus 140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 777752 33 368889999999999874 1 211 111223556665554 3221
Q ss_pred --C---CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 --G---KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 --g---~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
| +-+++...+..|+++..-+.+..+......-....+.+-+.- + ......|++-..+|.|+++.+..
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~-----~---~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTI-----S---RNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEETTT
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeec-----c---cCCceEEEEEECCCcEEEEECCC
Confidence 1 123444457799999998877665554232333344452100 0 01126788889999999999998
Q ss_pred CeEEeeeec
Q 008939 428 DEIVVPLRR 436 (548)
Q Consensus 428 ~~~~~~~~~ 436 (548)
-+.+..+..
T Consensus 292 Lkei~~~~l 300 (395)
T PF08596_consen 292 LKEIKSVSL 300 (395)
T ss_dssp --EEEEEE-
T ss_pred chHhhcccC
Confidence 777776665
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.03 Score=52.52 Aligned_cols=206 Identities=15% Similarity=0.209 Sum_probs=108.9
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
..++..++|+|+. +.++++....+.|+.+++.. +++....+. .....-.|++..++. ++++.-.+
T Consensus 21 ~~e~SGLTy~pd~--~tLfaV~d~~~~i~els~~G-------~vlr~i~l~-----g~~D~EgI~y~g~~~-~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDT--GTLFAVQDEPGEIYELSLDG-------KVLRRIPLD-----GFGDYEGITYLGNGR-YVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTT--TEEEEEETTTTEEEEEETT---------EEEEEE-S-----S-SSEEEEEE-STTE-EEEEETTT
T ss_pred cCCccccEEcCCC--CeEEEEECCCCEEEEEcCCC-------CEEEEEeCC-----CCCCceeEEEECCCE-EEEEEcCC
Confidence 3468899999973 45777777778887777643 233333221 134567888887775 55555568
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-- 330 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-- 330 (548)
+.++++++........... ...+.+. .-..++..+..++|++.++.|+.+-...-.++|.+..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~----~~~~~l~-----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRAD----VQKISLG-----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp TEEEEEEE----TT--EEE----EEEEE--------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred CcEEEEEEeccccccchhh----ceEEecc-----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 9999999965332211100 0001100 0012346789999999877777777776677776653
Q ss_pred -CeEEE--ee------eecCCceEEEEEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCC---------CCeEEEEE
Q 008939 331 -EQLIC--GG------KSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHN---------SWVSGVAF 391 (548)
Q Consensus 331 -~~~~~--~~------~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~---------~~V~~v~~ 391 (548)
...+. .. ......+..++++|.. ++++...+...|.++| .+++.+..+.-.. ..-..|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 11111 11 1123457889999865 5666677788999999 5677665543111 34678999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++ +| .|...++-+...+|
T Consensus 230 d~-------~G-------~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 230 DP-------DG-------NLYIVSEPNLFYRF 247 (248)
T ss_dssp -T-------T---------EEEEETTTEEEEE
T ss_pred CC-------CC-------CEEEEcCCceEEEe
Confidence 99 88 34445565554443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.016 Score=59.39 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=83.3
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
+.+--....|..+.++|+ ++.+++ ..+|.-.|+.... .+.. ..+......|.+.+ .+
T Consensus 26 k~lg~~~~~p~~ls~npn---gr~v~V-~g~geY~iyt~~~-----~r~k------------~~G~g~~~vw~~~n--~y 82 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN---GRFVLV-CGDGEYEIYTALA-----WRNK------------AFGSGLSFVWSSRN--RY 82 (443)
T ss_dssp EEEEE-SS--SEEEE-TT---SSEEEE-EETTEEEEEETTT-----TEEE------------EEEE-SEEEE-TSS--EE
T ss_pred ccCCCCCcCCeeEEECCC---CCEEEE-EcCCEEEEEEccC-----Cccc------------ccCceeEEEEecCc--cE
Confidence 333334556899999998 777777 6677777776221 0110 24556788999955 58
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
|+-.....|.|+.--++.. ...++. ...+..+-. |.+|+..+.+ .|.+|
T Consensus 83 Av~~~~~~I~I~kn~~~~~-~k~i~~--------------------------~~~~~~If~---G~LL~~~~~~-~i~~y 131 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEV-VKSIKL--------------------------PFSVEKIFG---GNLLGVKSSD-FICFY 131 (443)
T ss_dssp EEE-TTS-EEEEETTEE-T-T-------------------------------SS-EEEEE----SSSEEEEETT-EEEEE
T ss_pred EEEECCCeEEEEEcCcccc-ceEEcC--------------------------CcccceEEc---CcEEEEECCC-CEEEE
Confidence 8888889999974322111 001110 012333322 7777777655 89999
Q ss_pred eCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 327 DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 327 d~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
|+.+++.+..+... +|..+.|++++++++..+.+ .+.|++.+
T Consensus 132 Dw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 132 DWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 99999999887633 48999999999999988755 77776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.059 Score=52.42 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=118.5
Q ss_pred EEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 136 TNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 136 ~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
-.|.++...|++.. +..|.-|+..++. ...+. .+..+.+...-.. +..|+ ++.. .+++++++. +
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~---~g~Lv-~~~~-g~~~~~~~~-----~ 95 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDA---GGRLI-ACEH-GVRLLDPDT-----G 95 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecC---CCeEE-EEcc-ccEEEeccC-----C
Confidence 35777877666644 3388888887533 33444 3334433333222 22333 3333 345555533 1
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC----------cEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
...... ............+++...|+|. |..+.... .=.||.++..
T Consensus 96 ~~~t~~--~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-------------------- 151 (307)
T COG3386 96 GKITLL--AEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-------------------- 151 (307)
T ss_pred ceeEEe--ccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC--------------------
Confidence 111111 1111111346778899999987 55555442 0012222210
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCC--Ce----E-EEeeeecCCceEEEEEccCCCE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSK--EQ----L-ICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~--~~----~-~~~~~~~~~~v~~l~~spdg~~ 355 (548)
...++.+..|-..-+.++||||++.|+.+.. .+.|..|++.. +. . ...+....+..-.++...+|.+
T Consensus 152 -----g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 152 -----GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred -----CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 1222333333345678999999988877755 47788887752 11 1 1112223345556777788887
Q ss_pred EEEEeCCC-eEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 356 ILTGGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 356 l~sgs~dg-~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
.+++..++ .|.+|+.+ ++++..+..+...+++++|-
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 65554444 99999998 88888888777889999993
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0082 Score=62.68 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=72.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
......+.++|||+.+++++..+.+|.|+|+.+.......- + +.. ...+.......+ ....+|.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~--~-~~~-----------~~vvaevevGlG-PLHTaFDg 384 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK--I-KPR-----------DAVVAEPELGLG-PLHTAFDG 384 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc--C-Ccc-----------ceEEEeeccCCC-cceEEECC
Confidence 45677899999999666667779999999998732211000 0 000 111122222223 33578999
Q ss_pred CCCEEEEEECCCeEEEEeCCC----------CeEEEeeeecCCceEEE-----EEccCCCEEEEEe
Q 008939 310 DGTYLATVGRDGYLRVFDYSK----------EQLICGGKSYYGALLCC-----AWSMDGKYILTGG 360 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~l-----~~spdg~~l~sgs 360 (548)
+|+...+...|..|..||+.+ ...+..+.-|..+-.-. .-.|||++|++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 998888889999999999976 23444454444433222 2368999998864
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.088 Score=52.09 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred eEEEEEccCCCCCCeEEEecCCC-CceEEEecCCCC----CCceEEEEEc---------C-CcEEEEEeeecccccccce
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNS-NPVCHAFDQDAK----DGHDLLIGLN---------S-GDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~----~~~~l~~g~~---------d-g~I~iwdl~~~~~~~~~~~ 216 (548)
.|++.|..+ .+.+..+.+.+. .+++++.-.-.. ...+|++|+. . |.|+++++... .....++
T Consensus 3 ~i~l~d~~~--~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~-~~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTT--FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES-PENNFKL 79 (321)
T ss_dssp EEEEEETTT--SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EE
T ss_pred EEEEEeCCC--CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc-cccceEE
Confidence 467777766 447777766543 344443332111 1467888865 2 88999999862 0001111
Q ss_pred e--eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 217 V--GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 217 ~--~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
. .... .+++|++|+-. +. .|+++. .+.|++|++.... .+ .+...
T Consensus 80 ~~i~~~~-------~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~----~l-------------------~~~~~ 125 (321)
T PF03178_consen 80 KLIHSTE-------VKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSK----TL-------------------LKKAF 125 (321)
T ss_dssp EEEEEEE-------ESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTS----SE-------------------EEEEE
T ss_pred EEEEEEe-------ecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcc----cc-------------------hhhhe
Confidence 1 1111 47789998877 33 444443 4899999998632 00 11112
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-Ce-EEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ-LICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~-~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
++.+ ..+.++... +++++.|.....+.++.++. .. +...-+. ....++++.+-++++.++.+..+|.|.++...
T Consensus 126 ~~~~-~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 126 YDSP-FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-BS-SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecce-EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2211 245555443 56999999888888875543 22 3222222 24468888888777899999999999999876
Q ss_pred C-------c--e--eEEeccCCCCCeEEE---EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 372 D-------R--K--VVAWGEGHNSWVSGV---AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 372 ~-------~--~--~~~~~~~h~~~V~~v---~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
. + + .+..+. ....|+++ .+.|. ..+........++-++.+|.|...
T Consensus 203 ~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~-----~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 203 PEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR-----SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-------SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccccccceeEEEEE-CCCccceEEEEEeeec-----CCCCcccccceEEEEecCCEEEEE
Confidence 2 1 1 222333 34667777 33331 001000012457788888988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.092 Score=53.26 Aligned_cols=219 Identities=17% Similarity=0.167 Sum_probs=139.4
Q ss_pred eeEEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeec
Q 008939 134 TNTNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQ 208 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~ 208 (548)
..++.++.+..+.... .+.|.+.|.+.. ..+..+.... .+..++++|+ +..++++.. ++.|.+.|-.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~-~P~~~~~~~~---~~~vYV~n~~~~~~~vsvid~~t- 149 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL-GPVGLAVDPD---GKYVYVANAGNGNNTVSVIDAAT- 149 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc-CCceEEECCC---CCEEEEEecccCCceEEEEeCCC-
Confidence 3567777777555433 349999997763 3555555433 8899999999 666777766 57787777654
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.++..... . ...+ ..+++.|++...+++-..++.|.+.|........ .... .
T Consensus 150 -----~~~~~~~~---v---G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~-~-------------- 201 (381)
T COG3391 150 -----NKVTATIP---V---GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG-S-------------- 201 (381)
T ss_pred -----CeEEEEEe---c---CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc-c--------------
Confidence 22222211 1 1223 8999999999444444578999999966421110 0000 0
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeC-CC
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGE-DD 363 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~-dg 363 (548)
.... ......+.++|+++++...... +.+.+.|..++..... ...-......+..+|+|+.+.+... .+
T Consensus 202 -----~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~ 275 (381)
T COG3391 202 -----LVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGG 275 (381)
T ss_pred -----cccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCC
Confidence 0000 1334568899999976665443 5899999998877655 2211114567899999998888744 48
Q ss_pred eEEEEECCCceeEEeccCCC---CCeEEEEEec
Q 008939 364 LVQVWSMEDRKVVAWGEGHN---SWVSGVAFDS 393 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~---~~V~~v~~~p 393 (548)
.+.+.|..+.+....+.... ..+..+++.+
T Consensus 276 ~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 276 TVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eEEEEeCCCCceeeeecccccccccceecccee
Confidence 99999999887776655332 2455666655
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.2 Score=52.68 Aligned_cols=261 Identities=16% Similarity=0.136 Sum_probs=135.9
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce-EEEEEecCCCcEEEEEe---------CCCcEEEE
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC-TSVTWVPGGDGAFVVGH---------ADGNLYVY 258 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~p~~~~~l~s~~---------~dg~v~vw 258 (548)
..++++..+|.|+-+|.++ ++.+..... ..... ....+ ....+. + . ++++++ .+|.|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-----G~~~W~~~~-~~~~~-~~~~i~ssP~v~-~-~-~v~vg~~~~~~~~~~~~g~v~al 180 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-----GKQVWKFGN-NDQVP-PGYTMTGAPTIV-K-K-LVIIGSSGAEFFACGVRGALRAY 180 (488)
T ss_pred CeEEEecCCCeEEEEECCC-----CCEeeeecC-CCCcC-cceEecCCCEEE-C-C-EEEEeccccccccCCCCcEEEEE
Confidence 5788899999999999876 344332211 00000 00001 111121 1 2 455553 36788899
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCe-EEEEECCCCCEEEEEECCC---------------
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSI-NSIAFSTDGTYLATVGRDG--------------- 321 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~sp~g~~l~s~~~dg--------------- 321 (548)
|..+ ++....++....... .... ......+..+. ..| ...++.+.+..++.++.++
T Consensus 181 D~~T-G~~~W~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 181 DVET-GKLLWRFYTTEPDPN-AFPT-----WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred ECCC-CceeeEeeccCCCcC-CCCC-----CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 9876 444444433211000 0000 00000000111 111 1345555566777776555
Q ss_pred ---eEEEEeCCCCeEEEeeeecCCceE------EEEEc----cCCC---EEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 322 ---YLRVFDYSKEQLICGGKSYYGALL------CCAWS----MDGK---YILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 322 ---~v~vwd~~~~~~~~~~~~~~~~v~------~l~~s----pdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.|.-+|.++++.+..++.-...+. ...+. -++. .+++++.+|.+...|.++++.+-.....
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--- 330 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--- 330 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---
Confidence 799999999999877642111110 00111 1343 5788889999999999999887554311
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEE-----------------EeCCCeEEEEECCCCeEEeeeecCCCCCCcee---
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGS-----------------VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF--- 445 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s-----------------~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~--- 445 (548)
...+..+| + ..++. ...++.|.-.|+.+++.+.............+
T Consensus 331 ~~~~~~~~--------~------~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 EQPMAYDP--------G------LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ccccccCC--------c------eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 01122222 1 11111 12467888999999998887765311000000
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
...+........+.+++.++.+..+|..+++.+-.++.
T Consensus 397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 00111123345667777888888999999888877764
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0083 Score=61.19 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=111.5
Q ss_pred CCCceeEEeCCCCCEEEEe---cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc--EEE
Q 008939 130 STSMTNTNFDGKGTYIIFN---VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--VYS 202 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~---~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--I~i 202 (548)
...+..-.|++++..+++- ... .++++|++.+....+.... ..-...+|+|++ ..++++...||. |++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG--~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDG--SKLAFSSSRDGSPDIYL 266 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCC--CEEEEEECCCCCccEEE
Confidence 3445566888998887763 233 6999999987755554433 344556799993 234455556665 667
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+|+.... ..++.. ..+.-+.=.|+|+|+.++++.+..|.-.||-.+.++.....+
T Consensus 267 ~dl~~~~---~~~Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri------------ 321 (425)
T COG0823 267 MDLDGKN---LPRLTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL------------ 321 (425)
T ss_pred EcCCCCc---ceeccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe------------
Confidence 7776521 111111 122223567999999777788888887777766544322111
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-Ce--EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GY--LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~--v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
....+.-..-.|+|||++|+..+.. |. |.+.|+.++..+..+. .......-.|.+++..+...
T Consensus 322 -------------T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 322 -------------TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred -------------eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 1111222267799999999887743 44 6666666555333322 22334456788888876654
Q ss_pred eC
Q 008939 360 GE 361 (548)
Q Consensus 360 s~ 361 (548)
+.
T Consensus 388 s~ 389 (425)
T COG0823 388 SG 389 (425)
T ss_pred cc
Confidence 43
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=59.27 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=79.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
......+.++|+++ .+++ +.||...||...... . ...+.-..++|.+
T Consensus 32 ~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r----------~---------------------k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 32 EIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWR----------N---------------------KAFGSGLSFVWSS 78 (443)
T ss_dssp SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTE----------E---------------------EEEEE-SEEEE-T
T ss_pred CcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCc----------c---------------------cccCceeEEEEec
Confidence 44578999999998 5555 667888888832200 0 0014556788988
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
.+ .+|+-.....|.|+.--+.+....++.. ..+..+-. |.+|+..+.+ .|.+||+++++.+.++... .|..|
T Consensus 79 ~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 79 RN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp SS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEE
T ss_pred Cc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEE
Confidence 54 4777777888999633223222223221 12333322 8878777655 8999999999999998733 38999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.|++ +| .+++-.+. ..+.|++...
T Consensus 151 ~Ws~-------~g------~~val~t~-~~i~il~~~~ 174 (443)
T PF04053_consen 151 IWSD-------DG------ELVALVTK-DSIYILKYNL 174 (443)
T ss_dssp EE-T-------TS------SEEEEE-S--SEEEEEE-H
T ss_pred EEEC-------CC------CEEEEEeC-CeEEEEEecc
Confidence 9999 88 46666654 4677777554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0008 Score=68.51 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=73.6
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s 308 (548)
...+.-+.|+|.-+ ++|.+..+|.|.+..++.. .+..+..|...++ +++|.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q---------------------------Rlwtip~p~~~v~~sL~W~ 71 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ---------------------------RLWTIPIPGENVTASLCWR 71 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccc---------------------------eeEeccCCCCccceeeeec
Confidence 45678899999999 9999999999998887731 1222233345566 99999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCceEEEEEcc
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGALLCCAWSM 351 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~l~~sp 351 (548)
|||+.||+|..||+|++.|.+++..+... ......|.++-|.+
T Consensus 72 ~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 72 PDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 99999999999999999999998877652 23456788888874
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0074 Score=65.29 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=84.9
Q ss_pred CCCeeEeeecCCC-eEEEEECC-----CCCEEEEEECCCeEEEEeCCCC--eEEEe-ee--ecCCceEEEEEccCCCEEE
Q 008939 289 SNPIARWHICQGS-INSIAFST-----DGTYLATVGRDGYLRVFDYSKE--QLICG-GK--SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 289 ~~~~~~~~~h~~~-v~~~~~sp-----~g~~l~s~~~dg~v~vwd~~~~--~~~~~-~~--~~~~~v~~l~~spdg~~l~ 357 (548)
.+.|..|+.|... |..++=.. +...-+.|-.+..|..||.+-. +++.. .+ .......|++-+.+| +||
T Consensus 514 GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~ia 592 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIA 592 (794)
T ss_pred CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEE
Confidence 4567888888644 55543211 1234566778889999999853 23321 11 233468899988888 699
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+.+|.||+||--..+....|.+-..+|.+|..+. || ++|+..+ +..|.|+|..
T Consensus 593 vgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-------DG------kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-------DG------KWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-------CC------cEEEEee-cceEEEEEEe
Confidence 999999999999543344445667789999999999 99 5665544 5678888753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.23 Score=50.81 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=93.9
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.|.+|+... +.+ ....++ .+.+.++.|..+.. |++-..||.+++||+.-. . .+...
T Consensus 62 ~I~iys~sG------~ll-~~i~w~------~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~--~--~fsl~----- 117 (410)
T PF04841_consen 62 SIQIYSSSG------KLL-SSIPWD------SGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGE--F--QFSLG----- 117 (410)
T ss_pred EEEEECCCC------CEe-EEEEEC------CCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCc--e--eechh-----
Confidence 477777654 322 333332 37899999988654 677779999999998631 1 11100
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEee---ee-------cCCceEEE
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGG---KS-------YYGALLCC 347 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~---~~-------~~~~v~~l 347 (548)
..+......+..+....+..+|-.++ ..++.+.+.+-.... ....+ .. +.....-.
T Consensus 118 -----------~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 118 -----------EEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -----------hhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccce
Confidence 01111111122233334444553333 234444333222211 11111 00 00000002
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++.+....+....++.+.+.+-...+. +. ..+++..|+.+| +| +.++.-..+|.+.+....-
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-------ng------~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-------NG------KFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-------CC------CEEEEEECCCCEEEEECcc
Confidence 2444444444444555555444332211 22 346899999999 88 6888888889999988766
Q ss_pred CeEEeeeec
Q 008939 428 DEIVVPLRR 436 (548)
Q Consensus 428 ~~~~~~~~~ 436 (548)
.+....+..
T Consensus 248 ~~~~~e~~~ 256 (410)
T PF04841_consen 248 SEKLCEFDT 256 (410)
T ss_pred cceeEEeec
Confidence 666655544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.23 Score=50.36 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=148.4
Q ss_pred CceeEEeCCCCCEEEEec--CCeEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEE-EEEcCCcEEEEEeee
Q 008939 132 SMTNTNFDGKGTYIIFNV--GDAIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQ 207 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~--~d~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~ 207 (548)
.+..+.+.+++..+.+.. .+.+.+.+.. ...+......+ ..+..++.++. +..++ ....++.|.+.|...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~---~n~~~~~~~~g~~~p~~i~v~~~---~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT---SNTVTQSLSVGGVYPAGVAVNPA---GNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc---cceeeeeccCCCccccceeeCCC---CCeEEEecCCCCeEEEEcCcc
Confidence 344577778885555433 2234444433 12222222222 56778888888 55444 444458899999654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+...... -......+++.|+++ .+.++.. ++.+.+.|..+...
T Consensus 106 ------~~~~~~~~-------vG~~P~~~~~~~~~~-~vYV~n~~~~~~~vsvid~~t~~~------------------- 152 (381)
T COG3391 106 ------NTVLGSIP-------VGLGPVGLAVDPDGK-YVYVANAGNGNNTVSVIDAATNKV------------------- 152 (381)
T ss_pred ------cceeeEee-------eccCCceEEECCCCC-EEEEEecccCCceEEEEeCCCCeE-------------------
Confidence 22222111 122567899999998 4444444 67788877765221
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEEE-e---eeecCCceEEEEEccCCCEEEEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLIC-G---GKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~-~---~~~~~~~v~~l~~spdg~~l~sg 359 (548)
+.....-..+ ..++++|+|+.++... .++.|.+.|........ . ...-...-..+.++|+|+++.+.
T Consensus 153 -------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 153 -------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred -------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 1111111123 7899999999766665 78899999987666553 1 01112234568899999976665
Q ss_pred eCC---CeEEEEECCCceeEEeccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCCeEEEEECCCCeEEeee
Q 008939 360 GED---DLVQVWSMEDRKVVAWGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 360 s~d---g~I~vwd~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~-~~Dg~i~lwd~~~~~~~~~~ 434 (548)
... +.+...|..++........-.. ....+.++| +| ..+... ...+.+.+-|..+.......
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-------~g------~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-------AG------KAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-------CC------CEEEEEecCCCeEEEEeCCCCceeeee
Confidence 443 5999999998877665221122 566788999 88 344433 45688999999988877665
Q ss_pred ec
Q 008939 435 RR 436 (548)
Q Consensus 435 ~~ 436 (548)
..
T Consensus 292 ~~ 293 (381)
T COG3391 292 PT 293 (381)
T ss_pred cc
Confidence 44
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.031 Score=55.13 Aligned_cols=270 Identities=13% Similarity=0.019 Sum_probs=117.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
-.+.=+|.++|..+|..+..||.-.+|-++.......++.. +.........++|+.
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------------------------g~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------------------------GPGDNTFGGFLSPDD 92 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------------SS-B-TTT-EE-TTS
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------------------------CCCCCccceEEecCC
Confidence 33444678899867777777776555544432211111111 000112235567888
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEc--cCCCEEEEEe---CC-------------------CeEEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS--MDGKYILTGG---ED-------------------DLVQV 367 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~s--pdg~~l~sgs---~d-------------------g~I~v 367 (548)
+.++.......|+-.|+++.+....+......+-...|. .|+..++-.- .| ..|..
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 888777777899999999988766666556655555664 3555543221 11 12555
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CC-eEEEEECCCC-eEEeeeecCCC---
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DT-RLLLWDLEMD-EIVVPLRRGPL--- 439 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg-~i~lwd~~~~-~~~~~~~~~~~--- 439 (548)
.|+.+++....+. -..++..+.|+|. |. .+|+-|-+ |. .-+||-+++. .....+....+
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~------dp------~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPT------DP------TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGES 239 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETT------EE------EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEE
T ss_pred EECCCCceeEEEe-cCccccCcccCCC------CC------CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcc
Confidence 6788877655555 6778999999992 33 45555543 22 1366765543 22333322221
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEE-CC-------------
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVC-RE------------- 504 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s-~D------------- 504 (548)
.+.-.|.+++....++.. .-+..+..+.-.+..+.+...... ......+--++|+ |++|- .|
T Consensus 240 ~gHEfw~~DG~~i~y~~~-~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 240 VGHEFWVPDGSTIWYDSY-TPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEEEE-TTSS-EEEEEE-ETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE---------------
T ss_pred cccccccCCCCEEEEEee-cCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 222345666643333211 112222233334444443322111 1222333344564 55442 22
Q ss_pred ---CeEEEEeCCCCCcc-cc-------------CCCCcEEEecCCCCceEeeec
Q 008939 505 ---GHIKIWMRPGVAES-QS-------------SSSETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 505 ---g~I~iW~~~~~~~~-~~-------------~~~~~v~~~s~d~~~l~s~~~ 541 (548)
--|.++++..+... .. ...++-..||||+++|+-...
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 14666777654421 11 112344599999999776543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.03 Score=54.18 Aligned_cols=216 Identities=16% Similarity=0.246 Sum_probs=124.6
Q ss_pred eEEeCCCCCEEEEecC---CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 135 NTNFDGKGTYIIFNVG---DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~---d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
.++++.||+++.+..- ..|.|-|++.. +.+..+.. +-|.-.-|.+. ..+..-+.||.+....+...-+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~----PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEIDT----PGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEEEG----TSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeeecC----CCEEEEEecCC--CceEEEecCCceEEEEECCCCCE
Confidence 4688889998887332 38999999973 36766663 23444455532 35888899999999988853222
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-CCcccccccceeeeecCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD-SSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
. .+. ...|..+ ....+..-++...+. .++--+.+|.|+--|+..+.... ..+....+. .
T Consensus 171 ~-~~~--t~~F~~~---~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~-------------e 230 (342)
T PF06433_consen 171 A-QKS--TKVFDPD---DDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA-------------E 230 (342)
T ss_dssp E-EEE--EEESSTT---TS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH-------------H
T ss_pred e-Eee--ccccCCC---CcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCcc-------------c
Confidence 1 111 1122221 111222334555555 55557888999998887532100 000000000 0
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEEC---C-------CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEE
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGR---D-------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTG 359 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---d-------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sg 359 (548)
.-..|+. +...-+++++..+.|++.-. + ..|.++|+.+++.+..+.. ..++.+|..+.|.+ +|++.
T Consensus 231 ~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 231 KADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred cccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence 0012222 44555778775554444211 1 2688999999999988763 24688999999877 55444
Q ss_pred -eCCCeEEEEECCCceeEEeccC
Q 008939 360 -GEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 360 -s~dg~I~vwd~~~~~~~~~~~~ 381 (548)
..++.|.+||..+++.+..+..
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 4589999999999999988773
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00086 Score=41.80 Aligned_cols=39 Identities=28% Similarity=0.563 Sum_probs=34.3
Q ss_pred CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 331 ~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
++++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=49.81 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=76.0
Q ss_pred CcceEEEEEecCCCcEEEEEeCC---C-cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHAD---G-NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~d---g-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
...+.-+.|+|..+.+|.-|.+. . .-+||-++.++.....+..... ...+..=
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----------------------~e~~gHE 243 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----------------------GESVGHE 243 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----------------------TEEEEEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----------------------Ccccccc
Confidence 44567788888888666666642 2 2367777664433222211100 1223344
Q ss_pred EECCCCCEEEEEE-----CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC----------------e
Q 008939 306 AFSTDGTYLATVG-----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD----------------L 364 (548)
Q Consensus 306 ~~sp~g~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg----------------~ 364 (548)
-|.|||..|..-+ .+..|.-+|+.+++....... .+..-+--++||++++-=+.|. .
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 5889998766543 245677888888765432221 2344455678998776533332 5
Q ss_pred EEEEECCCceeEEec---------cCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 365 VQVWSMEDRKVVAWG---------EGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 365 I~vwd~~~~~~~~~~---------~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
|.+++++.++..... .+|.. .=-.+.|+| ||. ..|.+....|...||=+
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-------Dgk-----~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-------DGK-----WVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-------TSS-----EEEEEE-TTSS-EEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-------CCC-----EEEEECCCCCCccEEEE
Confidence 677888776543211 11111 113578999 983 56666667777666643
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.32 Score=50.00 Aligned_cols=251 Identities=14% Similarity=0.179 Sum_probs=124.6
Q ss_pred eEEeCCCCCEEEEe----cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC----------
Q 008939 135 NTNFDGKGTYIIFN----VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG---------- 198 (548)
Q Consensus 135 ~~~~~~~g~~l~~~----~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg---------- 198 (548)
...++|+|++++++ +++ .++|+|++++. .+.. .+.......+.|.++ +..|+....+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d-~i~~~~~~~~~W~~d---~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPD-GIENPKFSSVSWSDD---GKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEE-EEEEEESEEEEECTT---SSEEEEEECSTTTSS-CCGCC
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCC-cccccccceEEEeCC---CCEEEEEEeCcccccccCCCC
Confidence 57899999999974 333 79999999854 4332 112223334899988 55555554333
Q ss_pred -cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCccccc
Q 008939 199 -DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 199 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~ 274 (548)
.|+.|.+.+...+ ..++ |.... .......+..+++++.+++...... .+++.|+.......
T Consensus 202 ~~v~~~~~gt~~~~--d~lv----fe~~~--~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~------- 266 (414)
T PF02897_consen 202 RQVYRHKLGTPQSE--DELV----FEEPD--EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD------- 266 (414)
T ss_dssp EEEEEEETTS-GGG---EEE----EC-TT--CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-------
T ss_pred cEEEEEECCCChHh--CeeE----EeecC--CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-------
Confidence 2788887763211 1121 11111 1112668889999994444444333 46777776521000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeE---EEeeeecCCceEEEE
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQL---ICGGKSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~~~---~~~~~~~~~~v~~l~ 348 (548)
.....+......+....-+.++.+++... .++.|...++..... ...+..+...+.-..
T Consensus 267 ---------------~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 267 ---------------AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp ----------------SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred ---------------CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 11222222223333322222333444332 235677777776542 224444555333333
Q ss_pred EccCCCEEEE-EeCCC--eEEEEECC-CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEE
Q 008939 349 WSMDGKYILT-GGEDD--LVQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLL 422 (548)
Q Consensus 349 ~spdg~~l~s-gs~dg--~I~vwd~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~l 422 (548)
+...+.+|+. --.++ .|+++|+. ..........-.+.|..+...+ ++. . .++...+ .-..+..
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~-------~~~--~--~~~~~ss~~~P~~~y~ 400 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDF-------DSD--E--LRFSYSSFTTPPTVYR 400 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-T-------T-S--E--EEEEEEETTEEEEEEE
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCC-------CCC--E--EEEEEeCCCCCCEEEE
Confidence 4444555554 43443 68889998 4433322222334456665544 331 1 2233333 2468899
Q ss_pred EECCCCeEEe
Q 008939 423 WDLEMDEIVV 432 (548)
Q Consensus 423 wd~~~~~~~~ 432 (548)
||+.+++...
T Consensus 401 ~d~~t~~~~~ 410 (414)
T PF02897_consen 401 YDLATGELTL 410 (414)
T ss_dssp EETTTTCEEE
T ss_pred EECCCCCEEE
Confidence 9999987653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.48 Score=51.60 Aligned_cols=357 Identities=12% Similarity=0.126 Sum_probs=170.7
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc---eEEEEEcCCcEEEEEeeeccc
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH---DLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~---~l~~g~~dg~I~iwdl~~~~~ 210 (548)
....+.+...++.++++ .+...++..+....+.... ....+.|+.++|.+.+.+ .+++|..+..+.+.-....
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~-~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd-- 568 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKE-FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD-- 568 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeeeehe-ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC--
Confidence 33333444456666665 5555555543322333333 235899999999865544 8999999988766543321
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
-.+. .+..-....-+..|--..|--+.. +|+++..||.+.-|-++..........
T Consensus 569 ---~~~~--~~~~l~~~~iPRSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~K------------------- 623 (1096)
T KOG1897|consen 569 ---LILI--THEQLSGEIIPRSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRK------------------- 623 (1096)
T ss_pred ---ccee--eeeccCCCccchheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEcccc-------------------
Confidence 1111 111112222344455555555555 999999999998887765322111110
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC--CCEEEEEeCCCeEEEE
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD--GKYILTGGEDDLVQVW 368 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~sgs~dg~I~vw 368 (548)
.......++.--.|+..++.-+.+..|+-.-+|..+ ++++..--....--.-+.|+.+ ...|+.+. .+.+++.
T Consensus 624 ---k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~ 698 (1096)
T KOG1897|consen 624 ---KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIG 698 (1096)
T ss_pred ---ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEE
Confidence 001112344445555544333333445555555443 3333221111110111222222 12455553 4566666
Q ss_pred ECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-----------CC---CeEEEEECCCCeEEe
Q 008939 369 SMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-----------QD---TRLLLWDLEMDEIVV 432 (548)
Q Consensus 369 d~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-----------~D---g~i~lwd~~~~~~~~ 432 (548)
-++.-+. +.++. -......+++.+ .. ..+...+ .. ..++++|-.+-+.+.
T Consensus 699 tid~iqkl~irtvp-l~~~prrI~~q~-------~s------l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 699 TIDEIQKLHIRTVP-LGESPRRICYQE-------SS------LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred Eecchhhcceeeec-CCCChhheEecc-------cc------eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 6554221 22222 223344555554 11 1122111 11 357888888877766
Q ss_pred eeecCCCCCCce-----ecCCCCccccCCeeeeccc----------CCCCceeecCCCCceEEeecC--CCCeeEEEEeC
Q 008939 433 PLRRGPLGGSPT-----FSTGSQSAHWDNVCPVGTL----------QPAPSMRDVPKLSPLVAHRVH--TEPLSGLIFTQ 495 (548)
Q Consensus 433 ~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~g~~----------~~~~~~~d~~~~~~~~~~~~h--~~~V~~l~fsp 495 (548)
..+....-.... |..+. +..+.+|+. .+.+.++.+.....+.....+ .+.+.++.--
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~-----~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f- 838 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDP-----NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF- 838 (1096)
T ss_pred eccccccceeeeeeeeeecCCC-----ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-
Confidence 655432222221 32221 222333322 233444444432222222111 2233333222
Q ss_pred CeEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeecccc
Q 008939 496 ESVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 496 d~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
++.+.++-...||++++..+++ ....+...++ .+.-.++.|+.|+.-++
T Consensus 839 ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 839 NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 2455566678999999877642 2334444554 55688888999877644
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.091 Score=51.13 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=81.5
Q ss_pred CCeEEEEECCCCCEEEEEEC-----------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEE
Q 008939 300 GSINSIAFSTDGTYLATVGR-----------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~-----------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~v 367 (548)
...+.+...|+|.+.++.-. -|.|..+|. .+..+..+..+-..-+.|+||||++.|...-. .+.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34556777888876554333 133444443 45555555554555678999999987776654 478888
Q ss_pred EECCC--c----e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-eEEEEECCCCeEEeeeecC-C
Q 008939 368 WSMED--R----K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRG-P 438 (548)
Q Consensus 368 wd~~~--~----~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~~-~ 438 (548)
|++.. + + ....+..+.+..-.++.+. +| ++.+++..+| .|.+|+.. ++++..++.+ .
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-------dG------~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-------DG------NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeC-------CC------CEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 88763 1 1 1122222334445566665 66 3443444443 99999998 9999888876 5
Q ss_pred CCCCceecC
Q 008939 439 LGGSPTFST 447 (548)
Q Consensus 439 ~~~~~~~~~ 447 (548)
...+++|..
T Consensus 256 ~~t~~~FgG 264 (307)
T COG3386 256 RPTNPAFGG 264 (307)
T ss_pred CCccceEeC
Confidence 566666643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=41.48 Aligned_cols=38 Identities=34% Similarity=0.656 Sum_probs=33.5
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777889999999999889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.029 Score=44.80 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=66.6
Q ss_pred eEEEEEe---cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 233 CTSVTWV---PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 233 v~~l~~~---p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
|++|++. .++.+.|++|+.|..|++|+-+. .+..... ...|.+++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------~~~Ei~e-~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------IVAEITE-TDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----------------------------EEEEEec-ccceEEEEEcC
Confidence 4555554 45567999999999999998653 1111221 25677777665
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc---CC-CEEEEEeCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM---DG-KYILTGGEDDLVQV 367 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp---dg-~~l~sgs~dg~I~v 367 (548)
. ..++.+..+|+|-+|+-. +.+...+... .+.++++.. || .-|++|-.+|.|-+
T Consensus 53 ~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 53 G-GRFAYALANGTVGVYDRS--QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred C-CEEEEEecCCEEEEEeCc--ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5 579999999999999763 3344444333 355665443 33 25888988888753
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.31 Score=46.95 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=125.5
Q ss_pred CCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccc-eee
Q 008939 140 GKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK-LVG 218 (548)
Q Consensus 140 ~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~-~~~ 218 (548)
..++.++.+..+.++++++.... .+...... ..+..+..-|+ -+ ++..-.|+.|+++++.......... ...
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~-~~~~i~~~--~~I~ql~vl~~---~~-~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPS-KPTRILKL--SSITQLSVLPE---LN-LLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCc-cceeEeec--ceEEEEEEecc---cC-EEEEEcCCccEEEEchhhccccccccccc
Confidence 45678888888889999993221 23333222 23777777776 22 3444456999999998632222111 000
Q ss_pred eee-eccCCcccCcceEEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEe
Q 008939 219 AHH-YNKDGSVNNSRCTSVT--WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW 295 (548)
Q Consensus 219 ~~~-~~~~~~~~~~~v~~l~--~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (548)
... ...........+...+ =...+...|+++ ...+|.+|.......... ...+.+
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~---------------------~~~ke~ 135 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS---------------------KLLKEI 135 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccc---------------------ceeEEE
Confidence 000 0000001122334333 112333244444 445899988865211110 112222
Q ss_pred eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec------------CCceEEEEEccCCCEEEEEeCCC
Q 008939 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY------------YGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 296 ~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~sgs~dg 363 (548)
... ..+..++|. ++.|+.+..+ ...+.|+.++.....+... ..++..+.. +++++|++- |.
T Consensus 136 ~lp-~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~ 208 (275)
T PF00780_consen 136 SLP-DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN 208 (275)
T ss_pred EcC-CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc
Confidence 222 678889998 4577777655 4788899876543322111 122333333 345666543 33
Q ss_pred eEEEEECCCceeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 LVQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~I~vwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.-.+.|.. |+... .++- ......+++.. .+|+.... +.|.||++.++++++.+..
T Consensus 209 ~g~fv~~~-G~~~r~~~i~W-~~~p~~~~~~~---------------pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 209 IGVFVNKN-GEPSRKSTIQW-SSAPQSVAYSS---------------PYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred eEEEEcCC-CCcCcccEEEc-CCchhEEEEEC---------------CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 44444443 33222 2221 22445566543 24544444 5699999999999998875
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.24 Score=45.59 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=81.9
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEE
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLAT 316 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 316 (548)
...++.+.+++.|+..+.+..-|..++ ...+.. .....|.+-+.- -|.+++.
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG-~~~We~--------------------------ilg~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSG-NLIWEA--------------------------ILGVRIECSAIV-VGDFVVL 68 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCC-cEEeeh--------------------------hhCceeeeeeEE-ECCEEEE
Confidence 344555657888888888888887652 211100 011223332222 4677999
Q ss_pred EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 317 VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
|...|.+.+.+.++|+....+.....-=......+++.++..|+.|+..+..|.++..++...+...
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 9999999999999998877766443322234567889999999999999999999999988876433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.027 Score=60.10 Aligned_cols=92 Identities=8% Similarity=-0.056 Sum_probs=53.5
Q ss_pred eEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC------CeEEEEECCC-c--eeEEeccCCCCCeEEEE
Q 008939 322 YLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED------DLVQVWSMED-R--KVVAWGEGHNSWVSGVA 390 (548)
Q Consensus 322 ~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~vwd~~~-~--~~~~~~~~h~~~V~~v~ 390 (548)
.+..||.++.+-. ..+.. ......+..-++++.+.|+.+ ..+..||.++ . ..+..+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 4778888766432 22211 111112223357777777754 2467899886 3 34445544444445555
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeE
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEI 430 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~ 430 (548)
+ +| ++.+.||.|+ .+-.||..+++-
T Consensus 511 ~---------~~------~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 511 H---------DN------TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred E---------CC------EEEEEeeecceeehhhcCcccccc
Confidence 5 56 7889999888 666777766553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.094 Score=41.93 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=68.8
Q ss_pred eEEEEECC---CC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 302 INSIAFST---DG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 302 v~~~~~sp---~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
|++|++.. || +.|++|+.|..||+|+-. +.+..+.. .+.|.++.-... ..++.+-.+|+|-+|+-... +-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 45555543 43 589999999999999754 56666664 466888877766 56888999999999986432 33
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
+.+. ...+.++++.. .+.|| ...|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D----~~gdG-----~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYD----INGDG-----VPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEc----CCCCC-----ceEEEEEecCCeEE
Confidence 3332 23355555532 11133 15688888888774
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=59.12 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.|..-+.+|.|.-++++... ..... ...+.+.--.+....-+++|..+|.|++|.....+.....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k-----~s~rs----------e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~ 96 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK-----ESCRS----------ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR 96 (238)
T ss_pred hhccccCCcccccchhhhhh-----hhhhh----------hhhhhcceeecccCceEEeecccceEEEecCCccchHHHh
Confidence 46667788888888877621 11111 1111122111222227999999999999998854433222
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE-ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA-FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCC 347 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l 347 (548)
+.... ..|.++- --.++.+.+++..||.||.|++.-.+.+.....|. .++..+
T Consensus 97 ~~s~~-------------------------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 97 VCSGE-------------------------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred hhccc-------------------------ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 22111 2232221 12255688999999999999999888877766666 445455
Q ss_pred EEccCCCEEEEE--eCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTG--GEDDLVQVWSMED 372 (548)
Q Consensus 348 ~~spdg~~l~sg--s~dg~I~vwd~~~ 372 (548)
..+..+++|+.. +.|..++.|+++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 555555566665 6666666666653
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.3 Score=45.63 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=94.4
Q ss_pred EEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 237 TWVPGGDGAFVVGHAD-----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|+|+|. +|+..-.| |.|-|||.+.. ...+..|..|.-....+.|.+||
T Consensus 120 vfs~dG~-~LYATEndfd~~rGViGvYd~r~~-------------------------fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 120 VFSPDGR-LLYATENDFDPNRGVIGVYDAREG-------------------------FQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred ccCCCCc-EEEeecCCCCCCCceEEEEecccc-------------------------cceecccccCCcCcceeEEecCC
Confidence 5899999 66665443 78999998742 23355566666777889999999
Q ss_pred CEEEEEEC------C------------CeEEEEeCCCCeEEEe--ee--ecCCceEEEEEccCCCEEEEEeCCC-----e
Q 008939 312 TYLATVGR------D------------GYLRVFDYSKEQLICG--GK--SYYGALLCCAWSMDGKYILTGGEDD-----L 364 (548)
Q Consensus 312 ~~l~s~~~------d------------g~v~vwd~~~~~~~~~--~~--~~~~~v~~l~~spdg~~l~sgs~dg-----~ 364 (548)
+.|+.+.. | -.+.+.|..+++++.+ +. -+.-.|..++..+||..++-+-..| -
T Consensus 174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~p 253 (366)
T COG3490 174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLP 253 (366)
T ss_pred cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCC
Confidence 99887642 1 1233334344444322 11 2334577788888887555442211 1
Q ss_pred EEEEECCCceeEEeccC-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 365 VQVWSMEDRKVVAWGEG-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
..|=....++.+..+.. -...|-+|+.+.. ++ ...+|.=..+...+||..++..+..
T Consensus 254 pLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~------~g------lV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 254 PLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR------DG------LVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc------CC------eEEEecCCCCeEEEEEcCCCcEEec
Confidence 12222233444443331 2346667777641 45 4455555677889999999987754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=68.35 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=86.3
Q ss_pred EEEECCCCCEEEEEE----CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 304 SIAFSTDGTYLATVG----RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
-..|+|...++++++ ..|.|.|| .++|++..... ..-.+.+++|+|..-.|+.|-+-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 356889888888776 45788888 45566433221 2233667999999888999999999999999887766666
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
..|..+|..+.|+| +| ..|+++..-|.|.+|.+.
T Consensus 98 ~th~a~i~~l~wS~-------~G------~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSH-------DG------TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecC-------CC------CeEEEcCCCceeEEEEee
Confidence 67999999999999 99 799999999999999776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.11 Score=51.32 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.....++|++++-- +.+++++.++.|++|++.... .+....+.......+..... ++++++|.....|.++..
T Consensus 84 ~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 84 STEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEE
T ss_pred EEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcc--cchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEE
Confidence 33446677777665 445888888999999999744 35555444433333333333 558999999999998866
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+.. .+.+... .++. ....++++.|.++++ .++++..+|++.++....
T Consensus 157 ~~~----~~~l~~v---a~d~--~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEE----NNKLILV---ARDY--QPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETT----TE-EEEE---EEES--S-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred Ecc----CCEEEEE---EecC--CCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 541 1112111 1111 356789999997776 899999999999999864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.097 Score=55.91 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=52.7
Q ss_pred eEEEEECCCCCEEEEEECC------------CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE--
Q 008939 302 INSIAFSTDGTYLATVGRD------------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV-- 367 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v-- 367 (548)
...-.|+|||+.|++.... +.+.+.++..++... ...+.|..+.|||||+.|+.-. ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 6778899998888777532 222222333332221 2345799999999999887765 467777
Q ss_pred -EECCCcee-E---Eec-cCCCCCeEEEEEec
Q 008939 368 -WSMEDRKV-V---AWG-EGHNSWVSGVAFDS 393 (548)
Q Consensus 368 -wd~~~~~~-~---~~~-~~h~~~V~~v~~~p 393 (548)
-....+.. + ..+ .+-...+..+.|..
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~ 506 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRT 506 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEec
Confidence 44344431 1 112 12334467888987
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.064 Score=54.05 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCE-------EEEEECCCeEEEEeCCCCeE--EEeeeec----CCceEEEEEccCCCE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTY-------LATVGRDGYLRVFDYSKEQL--ICGGKSY----YGALLCCAWSMDGKY 355 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~-------l~s~~~dg~v~vwd~~~~~~--~~~~~~~----~~~v~~l~~spdg~~ 355 (548)
.+.+..|+.|.. |+-+.+.|+.+. =+.|-.|..|.-||.+-... +...++| .....|.+-..+| +
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 356778888866 777778886431 23466788899999974322 2222222 2356788877777 7
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+++|+.+|.|++||--..+...-+.+...+|..|..+. || .+|+.. .+..|.|-|+.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvta-------dG------Kwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTA-------DG------KWILAT-CKTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeec-------cC------cEEEEe-cccEEEEEEEe
Confidence 99999999999999844444556778899999999998 99 555544 45677777754
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.97 Score=47.92 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=23.6
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+++.+..||.++.+|.++|+.+...+.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 566678899999999999999988876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.2 Score=47.33 Aligned_cols=178 Identities=10% Similarity=0.122 Sum_probs=92.1
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKS 261 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~ 261 (548)
+..+++++.++.|+-+|.++ ++.+......... ....+++--..-++ .++++. .+|.|+.+|.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~T-----Gk~~W~~~~~~~~---~~~~~tssP~v~~g--~Vivg~~~~~~~~~G~v~AlD~~ 189 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKT-----GKVVWSKKNGDYK---AGYTITAAPLVVKG--KVITGISGGEFGVRGYVTAYDAK 189 (527)
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEeeccccccc---ccccccCCcEEECC--EEEEeecccccCCCcEEEEEECC
Confidence 34688889999999999876 4444322110000 00011110001133 345543 26889999998
Q ss_pred CCCCCCCCcccccccceeeeecCC-CCCCCCeeE-----eeecCCCeE-EEEECCCCCEEEEEECC-----C--------
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPR-YSKSNPIAR-----WHICQGSIN-SIAFSTDGTYLATVGRD-----G-------- 321 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~h~~~v~-~~~~sp~g~~l~s~~~d-----g-------- 321 (548)
+ ++....+............... .....-... |..-.+.+. .+++.|+..+|+.+... +
T Consensus 190 T-G~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl 268 (527)
T TIGR03075 190 T-GKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNL 268 (527)
T ss_pred C-CceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCc
Confidence 7 5555544433221110000000 000000011 111112222 45677766666655421 2
Q ss_pred ---eEEEEeCCCCeEEEeeeecCCce---------EEEEEccCCC---EEEEEeCCCeEEEEECCCceeE
Q 008939 322 ---YLRVFDYSKEQLICGGKSYYGAL---------LCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 322 ---~v~vwd~~~~~~~~~~~~~~~~v---------~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
.|.-.|+++|+....++.....+ .-+.+..+|+ .++.+..+|.+.+.|-++++.+
T Consensus 269 ~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 269 YTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 67788999999987776422211 1223334776 7889999999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.048 Score=54.93 Aligned_cols=150 Identities=19% Similarity=0.390 Sum_probs=98.8
Q ss_pred CCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCC----CceEEEEEcCCcEEEEEeeecccccc
Q 008939 140 GKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKD----GHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 140 ~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~----~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
.+...|....+. .|+--|++.+. .|....++.+ |..+.+.|+.+. ...-++|..+..|.-||.+-+ ...
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--GKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc--Ccc
Confidence 344455554443 77777888765 8888888775 888888888651 234578999999999999853 221
Q ss_pred ccee-eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 214 KKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 214 ~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
+... +...|. -+....|.+=..+| ++++|+.+|.|++||- .+......+|.+.
T Consensus 418 kl~~~q~kqy~-----~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG------------------ 471 (644)
T KOG2395|consen 418 KLAVVQSKQYS-----TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLG------------------ 471 (644)
T ss_pred eeeeeeccccc-----cccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccC------------------
Confidence 1111 111111 23445565555555 7999999999999997 4344444444433
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
.+|..+..+.+|++|+..+ +.+|.+.++
T Consensus 472 -------~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 472 -------DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred -------CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 6899999999999877554 567776665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.68 Score=44.50 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=88.0
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
++.|++|+.+| |+++++... ....... ....|..+...|+-+ .|++- .|+.++++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~-----~~~~~i~--------~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP-----SKPTRIL--------KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC-----ccceeEe--------ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccc
Confidence 66899999988 999998321 1111111 344599999999887 44443 35999999997632221
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEE--ECCCCCEEEEEECCCeEEEEeCCCC-----eEEEeeeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIA--FSTDGTYLATVGRDGYLRVFDYSKE-----QLICGGKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~ 340 (548)
...+...... .....--.....+..++ -...+...+.+.....|.+|..... +....+. .
T Consensus 71 ~~~~~~~~~~------------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l 137 (275)
T PF00780_consen 71 TSAPLAFPKS------------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L 137 (275)
T ss_pred cccccccccc------------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c
Confidence 1100000000 00000000012344443 1123333344445568999888653 3344443 3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
...+.+++|. ++.|+.|..+ ...+.|+.++.....+
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 4678899998 4567777654 5788899877654433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.58 E-value=1 Score=45.67 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=63.5
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC--------CCCCccceeEEEE
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN--------SDGTAETVMYRFG 412 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--------~dg~~~~~~~~l~ 412 (548)
...+.++..+|++++.|+...=|.|.++|+.++..+..++|..+. .+.|........ .....+....+++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 345788999999998888777799999999999988888876543 222221100000 0001122334555
Q ss_pred EEeCCCeEEEEECCCCeEEeeeec
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
-+-.-|.|-||+++.+..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 666789999999999998877764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.91 Score=45.03 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=40.4
Q ss_pred CceEEeecCCCCeeEEEEeCC--------eEEEEE-CCCeEEEEeCCCCC-----cccc-CCCCcEE--EecCCCCceEe
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE--------SVLTVC-REGHIKIWMRPGVA-----ESQS-SSSETVL--STSSKDKPLLS 538 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd--------~l~t~s-~Dg~I~iW~~~~~~-----~~~~-~~~~~v~--~~s~d~~~l~s 538 (548)
.|+..+..| ..+..+.|-.. .++.+. ..+.|...++.... +... .....+. ++.|||.+.++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence 466666655 55778888742 244444 45677777765332 1111 2222343 77899999888
Q ss_pred eeccccccc
Q 008939 539 SKVVTSSYR 547 (548)
Q Consensus 539 ~~~~g~~~~ 547 (548)
.+..|.+||
T Consensus 323 ~d~~G~iyR 331 (331)
T PF07995_consen 323 DDSDGKIYR 331 (331)
T ss_dssp E-TTTTEEE
T ss_pred ECCCCeEeC
Confidence 887899987
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.24 Score=52.96 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCCEEEEEE------CCC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC---------
Q 008939 300 GSINSIAFSTDGTYLATVG------RDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--------- 362 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~------~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--------- 362 (548)
..+...+++|+|+.++..- .|. .|.+++.. +.......+ .....-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577899999999887765 243 45555643 222222222 237788999999877776533
Q ss_pred ---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 363 ---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 363 ---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
+.+.+.+++.++... .....|..+.|+| || .+|+... +++|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-------DG------~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSR-------DG------VRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECC-------CC------CEEEEEE-CCEEEE
Confidence 223333443332222 2356799999999 99 4555443 355544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.84 Score=45.78 Aligned_cols=245 Identities=11% Similarity=0.108 Sum_probs=104.4
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE--C--
Q 008939 245 AFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG--R-- 319 (548)
Q Consensus 245 ~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~-- 319 (548)
+|++.+ .++.|+|+|+.++.........++....+.. .+ . .....+..-|+|+.++++- .
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k-------~g---~-----s~PHT~Hclp~G~imIS~lGd~~G 153 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEK-------TG---L-----SRPHTVHCLPDGRIMISALGDADG 153 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHH-------H----E-----EEEEEEEE-SS--EEEEEEEETTS
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhh-------cC---C-----CCCceeeecCCccEEEEeccCCCC
Confidence 566554 7899999999864432222222211000000 00 0 1112222337888877753 2
Q ss_pred --CCeEEEEeCCCCeEEEeeeecC---CceEEEEEccCCCEEEEEe--------------------CCCeEEEEECCCce
Q 008939 320 --DGYLRVFDYSKEQLICGGKSYY---GALLCCAWSMDGKYILTGG--------------------EDDLVQVWSMEDRK 374 (548)
Q Consensus 320 --dg~v~vwd~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~sgs--------------------~dg~I~vwd~~~~~ 374 (548)
-|-+.++|-++-+.+....... ..-..+-|.|..+.+++.. -...+++||+.+++
T Consensus 154 ~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 154 NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp -S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 2567888888777666554322 2345667788777777653 23579999999999
Q ss_pred eEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC-CCCeEEeeeecCCCCCCceecCCCCc
Q 008939 375 VVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL-EMDEIVVPLRRGPLGGSPTFSTGSQS 451 (548)
Q Consensus 375 ~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (548)
.++++.--.. ....|.|.. .+ +.. +-++.+....+|..|-- +.++-.....
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH--~P---~~~-----~gFvg~aLss~i~~~~k~~~g~W~a~kV---------------- 287 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLH--DP---DAN-----YGFVGCALSSSIWRFYKDDDGEWAAEKV---------------- 287 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-S--ST---T-------EEEEEEE--EEEEEEEE-ETTEEEEEEE----------------
T ss_pred EeeEEecCCCCCceEEEEecC--CC---Ccc-----ceEEEEeccceEEEEEEcCCCCeeeeEE----------------
Confidence 9998874332 344666643 11 221 34666666677766654 3333211100
Q ss_pred cccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--e-EEEEECCCeEEEEeCCCCCcccc--------
Q 008939 452 AHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--S-VLTVCREGHIKIWMRPGVAESQS-------- 520 (548)
Q Consensus 452 ~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~-l~t~s~Dg~I~iW~~~~~~~~~~-------- 520 (548)
+.+.. ..+.-|.++.. +..+..-..-|++|..|.| + .+++=.+|.||.||+........
T Consensus 288 ------i~ip~--~~v~~~~lp~m--l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 288 ------IDIPA--KKVEGWILPEM--LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp ------EEE----EE--SS---GG--GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred ------EECCC--cccCccccccc--ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECc
Confidence 00000 00111222111 0111111245889999986 3 56667999999999876541111
Q ss_pred ---------------CCCCcEEEecCCCCceEeee
Q 008939 521 ---------------SSSETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 521 ---------------~~~~~v~~~s~d~~~l~s~~ 540 (548)
......+.+|-||++|-..+
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 11124458999999887653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.6 Score=43.69 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=115.4
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC------------------CCceEEEecCCCCCCceEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN------------------SNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~------------------~~~~~~~~~p~~~~~~~l~ 192 (548)
..+....|+|+|+.+++..+..|+++++.++. ...+.... ..-..+-|+|+ +..|+
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~---~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd---~~~la 116 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ---ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD---SKYLA 116 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE---EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT---SSEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCCC---eEEeccccceeEEcCccceeccccccccccceEECCC---CCEEE
Confidence 45567999999999999999999999987642 23333221 23467889999 55565
Q ss_pred EEE-cCCcEEEEEeeecccccc-cceeeeeeeccCCc---------------------------ccCcceEEEEEecCCC
Q 008939 193 IGL-NSGDVYSVSLRQQLQDVG-KKLVGAHHYNKDGS---------------------------VNNSRCTSVTWVPGGD 243 (548)
Q Consensus 193 ~g~-~dg~I~iwdl~~~~~~~~-~~~~~~~~~~~~~~---------------------------~~~~~v~~l~~~p~~~ 243 (548)
... .+..|..+.+........ .+.....++.+.+. ....-+..+.|.+++.
T Consensus 117 ~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 117 FLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred EEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 554 455566665544222111 11122222222111 1234567788888876
Q ss_pred cEEEE--EeCCC---cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC---CeEEEEEC-CCCC-E
Q 008939 244 GAFVV--GHADG---NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG---SINSIAFS-TDGT-Y 313 (548)
Q Consensus 244 ~~l~s--~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s-p~g~-~ 313 (548)
.|+. ...+. .+.++|..+ +...... -....+ .-..+.|. +++. +
T Consensus 197 -~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~------------------------~e~~~~Wv~~~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 197 -RLWVQWLNRDQNRLDLVLCDAST-GETRVVL------------------------EETSDGWVDVYDPPHFLGPDGNEF 250 (353)
T ss_dssp -EEEEEEEETTSTEEEEEEEEECT-TTCEEEE------------------------EEESSSSSSSSSEEEE-TTTSSEE
T ss_pred -EEEEEEcccCCCEEEEEEEECCC-CceeEEE------------------------EecCCcceeeecccccccCCCCEE
Confidence 2333 33332 344455543 1111111 000111 12244554 5544 5
Q ss_pred EEEEECCCeEEE--EeCCCCeEEEeeeecCCceEE-EEEccCCCEEE-EEeCC----CeEEEEECCCceeEEeccCCCCC
Q 008939 314 LATVGRDGYLRV--FDYSKEQLICGGKSYYGALLC-CAWSMDGKYIL-TGGED----DLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 314 l~s~~~dg~v~v--wd~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~-sgs~d----g~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
|.....||.-+| ++...+... .+....-.|.. +.|+++++.|. ++..+ ..|...+++.+..+..+......
T Consensus 251 l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 555557776554 455555533 44444455644 67888877544 55542 35666667723344555533333
Q ss_pred eEEEEEec
Q 008939 386 VSGVAFDS 393 (548)
Q Consensus 386 V~~v~~~p 393 (548)
-..+.|+|
T Consensus 330 ~~~~~~Sp 337 (353)
T PF00930_consen 330 HYSASFSP 337 (353)
T ss_dssp TEEEEE-T
T ss_pred ceEEEECC
Confidence 37899999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1 Score=41.03 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCeEEEEECCCCCEEE-EEECCCeEEEEe--CCCCe-----EEEeeeec---C-CceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 300 GSINSIAFSTDGTYLA-TVGRDGYLRVFD--YSKEQ-----LICGGKSY---Y-GALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~-s~~~dg~v~vwd--~~~~~-----~~~~~~~~---~-~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
+--+.++|+.+.+.+. +-+.+-+|.-|| ..+|. .+..++.. . -.--.++..-+|++.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 4456789998776555 445677787788 44553 23333321 1 11122444567888888888999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEe
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
.|..+++.+.++.-....|++++|-
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEec
Confidence 9999999999999889999999993
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.93 Score=42.50 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=71.4
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+...|.|+|....-++.+-.=|+ ..++|.... +........+ -+.+-+| =.||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~-----------------~RHfyGH------Gvfs 122 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQE-----------------GRHFYGH------GVFS 122 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCC-cCcEEEeccc-----------------Cceeecc------cccC
Confidence 4556788899988766666666665 567887752 2222211111 1122222 3699
Q ss_pred CCCCEEEEEECC-----CeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 309 TDGTYLATVGRD-----GYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 309 p~g~~l~s~~~d-----g~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
|||.+|+..-.| |.|-|||.+.+ +.+..+..|.-.-..+.|.+||+.|+.+.
T Consensus 123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 999998876544 78999999854 44666777777778899999999988764
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.1 Score=57.32 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=93.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCC-cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSG-DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
.+..+...++.. ...++-+.+| .|+.||++......... ...+.+.+...-......++.|.|.=....+++..|+
T Consensus 102 pi~~~v~~~D~t--~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFHDAT--DSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred cceEEEeccCCc--eEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhcccc
Confidence 445555556532 1223333333 58899998742221111 1111111111113455678999998775678888999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|++..+.........++. ....++++|+|.|+.++.|-..|++.-|... .+.
T Consensus 179 sl~V~~~~~~~~~v~s~p~--------------------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-lei 231 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFPV--------------------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEI 231 (1405)
T ss_pred chhhhhhhhhhhhhcccCc--------------------------ccceeeEEeccccceeeEecCCCeEEEeecc-cce
Confidence 9999887642211111111 2568899999999999999999999999765 332
Q ss_pred EEeee---ec-CCceEEEEEccCCCEEEEE
Q 008939 334 ICGGK---SY-YGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 334 ~~~~~---~~-~~~v~~l~~spdg~~l~sg 359 (548)
...+. .. ...|.||.|-..-.+|++-
T Consensus 232 k~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 232 KSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 22221 11 3679999999887777764
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.3 Score=43.15 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..+..|..+| ++ .+.++...=|.|.|+|+.++..++.++.
T Consensus 308 R~~~~i~~sP-------~~------~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 308 REGESICLSP-------SG------RLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred ceEEEEEECC-------CC------CEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 4567788888 77 5666665669999999999998888776
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.8 Score=43.08 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=108.0
Q ss_pred EEEecCCCCCCceEEEEE-cCCc----EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 178 CHAFDQDAKDGHDLLIGL-NSGD----VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~-~dg~----I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...++|+ +++|+.+. ..|. |+++|+++ ++.+...+. ......+.|.+++..++.+...+
T Consensus 128 ~~~~Spd---g~~la~~~s~~G~e~~~l~v~Dl~t-----g~~l~d~i~--------~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 128 GFSVSPD---GKRLAYSLSDGGSEWYTLRVFDLET-----GKFLPDGIE--------NPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEETTT---SSEEEEEEEETTSSEEEEEEEETTT-----TEEEEEEEE--------EEESEEEEECTTSSEEEEEECST
T ss_pred eeeECCC---CCEEEEEecCCCCceEEEEEEECCC-----CcCcCCccc--------ccccceEEEeCCCCEEEEEEeCc
Confidence 4567777 77777774 4454 99999987 232222111 22223499999988555555433
Q ss_pred ----------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC--eEEEEECCCCCEEEEEEC-
Q 008939 253 ----------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS--INSIAFSTDGTYLATVGR- 319 (548)
Q Consensus 253 ----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~- 319 (548)
..|+.|.+.+... .....+...... ...+..++|+++|+....
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~------------------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQS------------------------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GG------------------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred ccccccCCCCcEEEEEECCCChH------------------------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 2367777765211 111222222222 567888999998775432
Q ss_pred --C-CeEEEEeCCCC----eEEEeeeecCCceE-EEEEccCCCEEEEEe---CCCeEEEEECCCcee---EEeccCCCC-
Q 008939 320 --D-GYLRVFDYSKE----QLICGGKSYYGALL-CCAWSMDGKYILTGG---EDDLVQVWSMEDRKV---VAWGEGHNS- 384 (548)
Q Consensus 320 --d-g~v~vwd~~~~----~~~~~~~~~~~~v~-~l~~spdg~~l~sgs---~dg~I~vwd~~~~~~---~~~~~~h~~- 384 (548)
+ ..+.+.|+..+ .....+......+. .+... .+.+++... .++.|...++.+... ...+..|..
T Consensus 248 ~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 248 GTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp SSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred cccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 2 35788888764 22223333333343 34333 444444332 245777778877642 224444655
Q ss_pred -CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeEEeeeec
Q 008939 385 -WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 385 -~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~~~~~~ 436 (548)
.+..+... .+ ++++..-.++ .|+++|+..+.....+..
T Consensus 327 ~~l~~~~~~--------~~------~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 327 VSLEDVSLF--------KD------YLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEEEEEEE--------TT------EEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred eeEEEEEEE--------CC------EEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 45555543 22 5666666664 588899884555555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.75 Score=49.21 Aligned_cols=218 Identities=19% Similarity=0.206 Sum_probs=111.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-C-----cEEEEEeeecccccccceeeeeeeccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-G-----DVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g-----~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
.+..+|..+..+..+..+.. +..-.+++.-. +...++|+.+ | .+..||.+...|.....+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M--------- 367 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM--------- 367 (571)
T ss_pred eeEEecCCcCcEeecCCCCc-ccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCCceeccCCc---------
Confidence 67777877654434433332 22223333332 5678888888 3 377788776333221111
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCc-----EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGN-----LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
...+...-.-.-+|. +.++|+.||. |..||..++. +.... +... ...
T Consensus 368 ---~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~-----W~~va----------------~m~~---~r~ 419 (571)
T KOG4441|consen 368 ---NTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNK-----WTPVA----------------PMLT---RRS 419 (571)
T ss_pred ---cCccccceeEEECCE-EEEEeccccccccccEEEecCCCCc-----ccccC----------------CCCc---cee
Confidence 111111111122455 8888988864 5666665421 00000 0000 001
Q ss_pred CeEEEEECCCCCEEEEEECC------CeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCCC-----eEEE
Q 008939 301 SINSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGEDD-----LVQV 367 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~v 367 (548)
..-.+.+ +|++.++|+.| ..+..||..+.+-. ..+..-..... ++ .-++.+.+.|+.|+ .|..
T Consensus 420 ~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 420 GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEE
Confidence 1112222 67777888755 35778888776532 22222112122 22 23677888888776 3777
Q ss_pred EECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCCCeE
Q 008939 368 WSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEMDEI 430 (548)
Q Consensus 368 wd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~~~~ 430 (548)
||.++.+. +..+......+..+.. ++ ...+.|+.|+ +|..||..+++-
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~---------~~------~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVL---------GG------KLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEE---------CC------EEEEEecccCccccceeEEcCCCCCce
Confidence 88887653 3333334444444444 55 6788888775 466666665543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.026 Score=37.62 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=29.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~ 261 (548)
....|.+++|+|..+ +||.+..+|.|.+|+++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 356799999999999 99999999999999985
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.031 Score=60.80 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
.+..++.|+..|.+-..|+...- ....-..-.++|.+++|+.+|++++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 34568888888999888886431 11222334578999999999999999999999999999999998888878777777
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+-+.-+.+ ++ ..++++...|. +|.+.
T Consensus 178 vi~v~~t~----~n------S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTS----QN------SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeC----CC------cEEEEccCCCc--eEEEE
Confidence 66543211 22 35777766665 66543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=36.98 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=29.7
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
...|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 4443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.4 Score=44.63 Aligned_cols=321 Identities=12% Similarity=0.150 Sum_probs=160.1
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eE--EEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AI--FISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v--~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
..++....|-.|..++.++.+| .+ ++.|..++.....++..+....+.-..|+.. +..-+.+..|.-..+|.-+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk---~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSK---SRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeC---CceEEEEeCCCCEEEEecC
Confidence 5566667777778888888777 44 4556655543444555556666777777766 3344555566665566544
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEE-EEecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSV-TWVPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
. +.+..... -..+..+ .|+.+ ....|+.+. .+.+.+.-++.-++.....-+.
T Consensus 660 ~------kLv~spls--------~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl----------- 713 (1096)
T KOG1897|consen 660 G------KLVYSPLS--------LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL----------- 713 (1096)
T ss_pred C------cEEEeccc--------hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-----------
Confidence 3 22211111 1111111 12211 121344443 3567776665422111100000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-----------C---CeEEEEeCCCCeEEEeeee--c--CCceEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-----------D---GYLRVFDYSKEQLICGGKS--Y--YGALLC 346 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-----------d---g~v~vwd~~~~~~~~~~~~--~--~~~v~~ 346 (548)
......+++.+....+++.+. . ..++++|-++-+.++..+- . .-.+.+
T Consensus 714 --------------~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s 779 (1096)
T KOG1897|consen 714 --------------GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS 779 (1096)
T ss_pred --------------CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence 023334444442222222221 1 2467777776665543221 1 123555
Q ss_pred EEEccC-CCEEEEEe----------CCCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 347 CAWSMD-GKYILTGG----------EDDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 347 l~~spd-g~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+.|..| +.++++|. ..|.|.|+.+.+.+.+..... -.+.|.++.-- +| +++|.
T Consensus 780 ~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--------ng------kllA~ 845 (1096)
T KOG1897|consen 780 CKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--------NG------KLLAG 845 (1096)
T ss_pred eeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--------CC------eEEEe
Confidence 668877 66788775 247888888877433332221 23455554422 56 45544
Q ss_pred EeCCCeEEEEECCCCeEEeeeec-CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC--ceEE-eecCCCCee
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRR-GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS--PLVA-HRVHTEPLS 489 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~--~~~~-~~~h~~~V~ 489 (548)
-...|++|++.+.+.++.-.. ..+...+..... ...+.+|.+-.++.+-..+..+ .... -.-|...++
T Consensus 846 --In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~------gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 846 --INQSVRLYEWTTERELRIECNISNPIIALDLQVK------GDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred --cCcEEEEEEccccceehhhhcccCCeEEEEEEec------CcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 457899999998854432211 112222222212 2344555555554443333222 1111 113556677
Q ss_pred EEEEeCC-eEEEEECCCeEEEEeCCCC
Q 008939 490 GLIFTQE-SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 490 ~l~fspd-~l~t~s~Dg~I~iW~~~~~ 515 (548)
++.+-.+ .++-+-.+|.+.+-..+..
T Consensus 918 aveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 918 AVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eEEEecCceEEeecccccEEEEEecCC
Confidence 7776554 5777778888888876643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.67 E-value=4.2 Score=44.95 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=75.2
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc--------eEEEEEc----------------cCCCEEEEEeCCCeEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------LLCCAWS----------------MDGKYILTGGEDDLVQ 366 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------pdg~~l~sgs~dg~I~ 366 (548)
+..|+.++.++.|.-.|.++|+.+..+...... .+.+++. .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888899999999999988776532210 1223332 1344788899999999
Q ss_pred EEECCCceeEEeccCCCCCeE---EEEEec-----CCCCCC-CCCCccceeEEEEEEeC----------CCeEEEEECCC
Q 008939 367 VWSMEDRKVVAWGEGHNSWVS---GVAFDS-----YWSQPN-SDGTAETVMYRFGSVGQ----------DTRLLLWDLEM 427 (548)
Q Consensus 367 vwd~~~~~~~~~~~~h~~~V~---~v~~~p-----~~~~~~-~dg~~~~~~~~l~s~~~----------Dg~i~lwd~~~ 427 (548)
-.|.++++.+..+. .++.|. .+.-.+ ..++|. .++ .++.++. +|.|+-+|+++
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-------~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-------TVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC-------EEEEEecccccccccCCCcEEEEEECCC
Confidence 99999999887654 222221 000000 001111 133 4555532 68899999999
Q ss_pred CeEEeeeecC
Q 008939 428 DEIVVPLRRG 437 (548)
Q Consensus 428 ~~~~~~~~~~ 437 (548)
|+++..+...
T Consensus 346 Gkl~W~~~~g 355 (764)
T TIGR03074 346 GALVWAWDPG 355 (764)
T ss_pred CcEeeEEecC
Confidence 9999988753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.25 Score=52.79 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=42.1
Q ss_pred CCCEEEEEECC------CeEEEEeCCC-Ce--EEEeeeecCCceEEEEEccCCCEEEEEeCCC--eEEEEECCCceeEEe
Q 008939 310 DGTYLATVGRD------GYLRVFDYSK-EQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDD--LVQVWSMEDRKVVAW 378 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~-~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~vwd~~~~~~~~~ 378 (548)
++++.+.|+.+ ..+..||.++ .+ .+..+.........+.+ ++++.++|+.|+ .+..||..+.+-...
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 45666666654 2467899886 33 33333322222222222 788899999888 778888877654433
Q ss_pred ccCCC
Q 008939 379 GEGHN 383 (548)
Q Consensus 379 ~~~h~ 383 (548)
...|.
T Consensus 541 ~~~~~ 545 (557)
T PHA02713 541 CHQHS 545 (557)
T ss_pred hhhcC
Confidence 33343
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.7 Score=39.85 Aligned_cols=173 Identities=10% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...+..+.|+|+.+.+++..++ .-.||=-..++ .++++.... ..+-.++|--+ +.+.++--.++.++++.+..
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEecC---CEEEEEehhcceEEEEEEcC
Confidence 3448899999999999887777 55555444443 677765432 24455566655 66667667788898888775
Q ss_pred cccccccceeeeeeeccCCccc-CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc--cccccceeeeecC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVN-NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP--VIKDQTQFSVAHP 284 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (548)
...- .......+.-....+ +...-.++|.|.++ .|..+-+-.-+.||.+.........-. .......+.
T Consensus 160 ~t~~---~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f---- 231 (316)
T COG3204 160 DTTV---ISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF---- 231 (316)
T ss_pred CccE---EeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceE----
Confidence 3100 000000111111112 55678999999998 777777777788887763221111000 000111111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~ 329 (548)
-..|.++.|++ .+.+|+-+..++.|.-.|..
T Consensus 232 --------------~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 232 --------------VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred --------------eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 14588899997 56667777778888878775
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.068 Score=48.23 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEE-EeeeecCCceEE-EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~-l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
-+..++.|+.+|.|.+|+..-.-.. -....-...|.+ +.--.++.+..++..|+.|+.|++.-.+.+...-.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 3567899999999999988621111 111111222322 2233355678899999999999999887777666666
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.1 Score=45.18 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=57.6
Q ss_pred CCceeEEeCCCCCEEEEec-------------CCeEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNV-------------GDAIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-------------~d~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
..+..++|+++|+++++.. ++.|++++-..+ ..+.+..+.-.-..+..+++.++ + |+++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~---G--lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG---G--VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC---C--EEEeC
Confidence 4566899999999888753 236666654432 22233343333446788999887 5 55554
Q ss_pred cCCcEEEE-Eeeeccccc-ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 196 NSGDVYSV-SLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 196 ~dg~I~iw-dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
.. .|..| |........ .++.+. ..+......+......++|.|+|. +.++
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~-LYv~ 140 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGW-LYFN 140 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCC-EEEe
Confidence 44 45444 443211111 111111 111111111234578899999997 4443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.13 Score=56.31 Aligned_cols=98 Identities=19% Similarity=0.366 Sum_probs=70.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
.++.|+..|.+...|+..+ .. +. .+. .-+++|++++|+.+|..++.|-.+|.|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--L~-----------------------~~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--LG-----------------------PL-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--cc-----------------------hh-hcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 6788888888888887642 00 00 000 114899999999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceE---EEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 324 RVFDYSKEQLICGGKSYYGALL---CCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~---~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.+||+..++.+..+..|..+.. -+.+..++..++++...|. +|.+
T Consensus 155 ~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9999999888877766655444 3445556667777776665 5543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.09 E-value=4 Score=40.52 Aligned_cols=260 Identities=15% Similarity=0.172 Sum_probs=123.0
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEEcC---------C
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGLNS---------G 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~~d---------g 198 (548)
.+..++|.|+|+++++.-...|++++........+..+. ........++++|+-....+|++.... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 457899999999988877669999993321112333331 123466899999974444555555552 1
Q ss_pred cEEEEEeeec--ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCC
Q 008939 199 DVYSVSLRQQ--LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGA 265 (548)
Q Consensus 199 ~I~iwdl~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~ 265 (548)
.|.-|.+... .....+.++..... ... ....-..|.|.|++. ++++.+..+. =+|+.++.++.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~--~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPD-TSS--GNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES--CS--SSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred eeEEEeccCCccccccceEEEEEeCC-CCC--CCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceEEEecccCc
Confidence 3544544432 00111112111111 011 233446699999997 5555443332 11222222111
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEE-ECCCeEEEEeCCCCe-----------
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATV-GRDGYLRVFDYSKEQ----------- 332 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~-~~dg~v~vwd~~~~~----------- 332 (548)
....-+... ........|..--.....++|+|. |.++++= +.|..=.|.-+..+.
T Consensus 159 ~p~dnP~~~------------~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~ 226 (331)
T PF07995_consen 159 IPADNPFVG------------DDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGP 226 (331)
T ss_dssp B-TTSTTTT------------STTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSC
T ss_pred CCCCCcccc------------CCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCC
Confidence 110000000 000111223222245678999997 7655542 233322222222111
Q ss_pred ------------------EEEeeeecCCceEEEEEcc-------CCCEEEEEeCCCeEEEEECCCceeE----EeccCCC
Q 008939 333 ------------------LICGGKSYYGALLCCAWSM-------DGKYILTGGEDDLVQVWSMEDRKVV----AWGEGHN 383 (548)
Q Consensus 333 ------------------~~~~~~~~~~~v~~l~~sp-------dg~~l~sgs~dg~I~vwd~~~~~~~----~~~~~h~ 383 (548)
.+..+..| ..+..+.|-. .|.+++..-..+.|....++....+ ..+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
T PF07995_consen 227 KYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFG 305 (331)
T ss_dssp STTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSS
T ss_pred CCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCC
Confidence 11222222 4455666653 4456666666678888888654322 2233445
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
..+..|++.| || .++++...+|.|.
T Consensus 306 ~r~~~v~~~p-------DG------~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 306 GRPRDVAQGP-------DG------ALYVSDDSDGKIY 330 (331)
T ss_dssp S-EEEEEEET-------TS------EEEEEE-TTTTEE
T ss_pred CCceEEEEcC-------CC------eEEEEECCCCeEe
Confidence 5799999999 99 6777766777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.78 Score=47.37 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCeEEEEECCC----CCEEEEEECCCeEEEEeCC-----CCeEEEeeeecC---C--ceEEEEEccCCCEEEEEeCCCeE
Q 008939 300 GSINSIAFSTD----GTYLATVGRDGYLRVFDYS-----KEQLICGGKSYY---G--ALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 300 ~~v~~~~~sp~----g~~l~s~~~dg~v~vwd~~-----~~~~~~~~~~~~---~--~v~~l~~spdg~~l~sgs~dg~I 365 (548)
.-|.++.|.|- -.-|++.-....|.||.+. +.+.+.....+- - --..|.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 35889999984 3356666678899999885 333333322211 1 12457899999998887766665
Q ss_pred EEEECCC--ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 366 QVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 366 ~vwd~~~--~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+++++. .+....+. -.+-|.|.+|.+ ||. +++++.+..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~-------DG~-----RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTK-------DGQ-----RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecC-------cCC-----EEEEEeCCeEEEEEecCc
Confidence 6666654 34444454 667899999999 993 455555655567889853
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.69 Score=46.36 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=56.7
Q ss_pred CeEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEEEEcCCcEEEEEe-eecccccccceeeeeeeccCC-
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL-RQQLQDVGKKLVGAHHYNKDG- 226 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl-~~~~~~~~~~~~~~~~~~~~~- 226 (548)
+.+.+||+.+. +.++.+..... .+..+.|..+.....-++.+.-...|..|-- +...+. .++++.......++
T Consensus 222 ~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 222 HSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGW 298 (461)
T ss_dssp -EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS
T ss_pred CeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcc
Confidence 48999999984 48888887654 4677888766443333444445566666644 221111 12222211110000
Q ss_pred ---------cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC
Q 008939 227 ---------SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA 265 (548)
Q Consensus 227 ---------~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~ 265 (548)
.....-|++|..+.|++.+.+++-.+|.|+-||+.....
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 112456899999999995566667899999999986433
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.92 Score=48.76 Aligned_cols=119 Identities=11% Similarity=0.133 Sum_probs=70.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC--CCCCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS--TDGTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg~ 322 (548)
+|+.|..||.|.+|.++.--....... .+.... ..-..-.|-..++. ..++.+++++ ...++||+++....
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~--~~~~~~----~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFS--EDNDSG----FSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhc--cccccc----cccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCce
Confidence 899999999999998743000000000 000000 00011123333332 2589999998 77788898888888
Q ss_pred EEEEeCCCC--eEEE-eeeecCCceEEEEEccCC---C---EEEEEeCCCeEEEEEC
Q 008939 323 LRVFDYSKE--QLIC-GGKSYYGALLCCAWSMDG---K---YILTGGEDDLVQVWSM 370 (548)
Q Consensus 323 v~vwd~~~~--~~~~-~~~~~~~~v~~l~~spdg---~---~l~sgs~dg~I~vwd~ 370 (548)
|.||-+... +... .-..+...|.+|.|-++. . +|++++-.|.+.+|++
T Consensus 189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888866532 1111 111255668899987644 2 7778888999988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.8 Score=42.61 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 174 SNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+..+.|.|.... .-.|++.-....|.+|.+.....+..+.+... ....+.. .---..+.|+|... +|++-..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~---pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF---PVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc---ccCCCcccccCCCc-eEEEEec
Confidence 46788899987443 33566677778999999875333434433221 1111111 11123567999998 7777655
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS 329 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~ 329 (548)
...-.+++++.+.. .++.=-.-.+-|.|.+|.+||+.|+++- ..=.-.|||-.
T Consensus 133 ~dvSV~~sV~~d~s-------------------------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSS-------------------------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCc-------------------------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55545666654221 1111111248899999999998877653 22335688764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0093 Score=63.38 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCCeEEEEECC-CCCEEEEEECCCeEEEEeCC--CCeEE-----EeeeecCCceEEEEEcc---CCCEEEEEeCCCeEEE
Q 008939 299 QGSINSIAFST-DGTYLATVGRDGYLRVFDYS--KEQLI-----CGGKSYYGALLCCAWSM---DGKYILTGGEDDLVQV 367 (548)
Q Consensus 299 ~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~--~~~~~-----~~~~~~~~~v~~l~~sp---dg~~l~sgs~dg~I~v 367 (548)
.+.|-.+.|-. +-..++ -.-|.+.|||+. .|++. ........++.-+.|.| +.-++..+-.++.|++
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 36677777743 212222 233678999875 34332 22233444556666765 4556777777889988
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecC----CCCCCCCCCccceeEEEEEEeCCCeEEEEECC-----CCeEEeeeecCC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSY----WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE-----MDEIVVPLRRGP 438 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~----~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~-----~~~~~~~~~~~~ 438 (548)
.++.+... ..+++|..++..++|-.- -..-.+|| ..++.++.||.+++|.+- ...|+...+.+.
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG------tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG------TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC------cEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 87765332 445668777766554210 00001188 789999999988888653 333444444332
Q ss_pred CCCCceecCCC------CccccCCeeeecccCCCCceeecCCCCceEE--------eecCCCCeeEEEEeC---CeEEEE
Q 008939 439 LGGSPTFSTGS------QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA--------HRVHTEPLSGLIFTQ---ESVLTV 501 (548)
Q Consensus 439 ~~~~~~~~~~~------~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~--------~~~h~~~V~~l~fsp---d~l~t~ 501 (548)
..-.+|+.... ....|.-.|.........++|.-..++++.. ...|...|+.+.... ..+++-
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHh
Confidence 22233333222 1445665666666667788887666665511 112333333222211 126677
Q ss_pred ECCCeEEEEeC
Q 008939 502 CREGHIKIWMR 512 (548)
Q Consensus 502 s~Dg~I~iW~~ 512 (548)
+-|+.|++|--
T Consensus 363 ~v~~~i~~~qn 373 (1283)
T KOG1916|consen 363 SVDGTIKIWQN 373 (1283)
T ss_pred hhHHHHHHhhc
Confidence 88899999973
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.1 Score=39.46 Aligned_cols=134 Identities=20% Similarity=0.131 Sum_probs=78.8
Q ss_pred cceEEEEEecCCCcEEEEEeCC--CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHAD--GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
..+...++++++..+.++...+ ..|+++.... ...... . ...+..-.|+
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-------------------------~--g~~l~~PS~d 74 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-------------------------T--GGSLTRPSWD 74 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-------------------------c--CCcccccccc
Confidence 3688999999998444444233 3455554332 111111 1 1467778899
Q ss_pred CCCCEEEEEECCCeEEEEe-CCCCeE--EE-eeeecCCceEEEEEccCCCEEEEEe---CCCeEEEEECC---Cc-----
Q 008939 309 TDGTYLATVGRDGYLRVFD-YSKEQL--IC-GGKSYYGALLCCAWSMDGKYILTGG---EDDLVQVWSME---DR----- 373 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd-~~~~~~--~~-~~~~~~~~v~~l~~spdg~~l~sgs---~dg~I~vwd~~---~~----- 373 (548)
+++...+....+...+++. ...++. +. ......+.|..+.+||||..++.-. .++.|.+--+. .+
T Consensus 75 ~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 75 PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 9987777766666666663 333322 11 1111122799999999999877654 35777776553 22
Q ss_pred -eeEEeccCCCCCeEEEEEec
Q 008939 374 -KVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 374 -~~~~~~~~h~~~V~~v~~~p 393 (548)
..+.........+..+.|.+
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ccceEecccccCcceeeeecC
Confidence 11222223456889999988
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.4 Score=44.35 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCC-------CeEEE-eeee----cCCceEEEEEccCCCEEEEEeCC-----
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSK-------EQLIC-GGKS----YYGALLCCAWSMDGKYILTGGED----- 362 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-------~~~~~-~~~~----~~~~v~~l~~spdg~~l~sgs~d----- 362 (548)
...+.++|.+++ |+++.....+++.|... .+.+. .+.. +......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 446789999988 44444444333445431 12222 2222 12447789999999876654421
Q ss_pred --------------CeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 363 --------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 363 --------------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
+.|.-+|.+.++......++ .....++|+|
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~ 193 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDS 193 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECC
Confidence 34555555554433222333 3345788888
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.50 E-value=8.3 Score=42.72 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCeEEEEeCCCCeEEEeeeec---------CCc--------e-EEEEEccCCCEEEEEeC------------------CC
Q 008939 320 DGYLRVFDYSKEQLICGGKSY---------YGA--------L-LCCAWSMDGKYILTGGE------------------DD 363 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~---------~~~--------v-~~l~~spdg~~l~sgs~------------------dg 363 (548)
+|.|+-+|.++|+++..+..- .+. + ...++.+...+++.+.. .+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999998765421 000 0 22344444444443221 23
Q ss_pred eEEEEECCCceeEEeccC--CCCCe-------EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 364 LVQVWSMEDRKVVAWGEG--HNSWV-------SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~--h~~~V-------~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.|.-.|.++++.+-.++. |+-+= .-+.+.- .+| .....++.+..+|.+.+.|-++|+.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~------~~G---~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPD------ADG---TTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeec------CCC---cEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 455567777776655542 32211 1111110 033 12247889999999999999999988765
Q ss_pred e
Q 008939 435 R 435 (548)
Q Consensus 435 ~ 435 (548)
+
T Consensus 486 ~ 486 (764)
T TIGR03074 486 E 486 (764)
T ss_pred e
Confidence 4
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.56 Score=51.89 Aligned_cols=92 Identities=15% Similarity=-0.022 Sum_probs=63.4
Q ss_pred CCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEE-EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 300 GSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 300 ~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
.-..++.|.|.- ...+.+..|+.|++..+...... ..+. .....+|++|+|.|+.+++|-..|++.-|-.. .+...
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceee
Confidence 345578888853 34667778999999887643322 2222 44678999999999999999999999988654 33222
Q ss_pred eccC----CCCCeEEEEEec
Q 008939 378 WGEG----HNSWVSGVAFDS 393 (548)
Q Consensus 378 ~~~~----h~~~V~~v~~~p 393 (548)
.+.+ ....|.+|.|-.
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred cccCCCcCCCcceeEEEEec
Confidence 3321 136788999964
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=94.36 E-value=4.7 Score=41.48 Aligned_cols=65 Identities=8% Similarity=0.038 Sum_probs=42.2
Q ss_pred CCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEe-----cCCCCceEEEecCCC---CCCceEEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIH-----FSNSNPVCHAFDQDA---KDGHDLLIGL 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~-----~~~~~~~~~~~~p~~---~~~~~l~~g~ 195 (548)
..+..++|.|||+++++.-. ..|++++........+..+. ........++++|+- ....+|++..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 35568999999998888763 58888876543322222111 134678999999985 4445666654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.3 Score=44.23 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCCEEEEEECC------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC--------CeEEEEECCCc
Q 008939 310 DGTYLATVGRD------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED--------DLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd~~~~ 373 (548)
++++++.|+.+ ..+..||..+.+-... +....... + +...++++++.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 55666666632 4578899876643221 11111111 2 223356677777643 23888998876
Q ss_pred eeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeE
Q 008939 374 KVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEI 430 (548)
Q Consensus 374 ~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~ 430 (548)
+-.. .+.........+.+ ++ .+++.||.+ ..|.+||..+.+-
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~---------~~------~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF---------NN------KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceEEEE---------CC------EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5322 22111111222333 44 566677654 4678888877654
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.91 E-value=7.6 Score=38.82 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=77.0
Q ss_pred CCeEEEEE--CC-CCC-EEEEEECCCeEEEEeCC---CC----eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 300 GSINSIAF--ST-DGT-YLATVGRDGYLRVFDYS---KE----QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 300 ~~v~~~~~--sp-~g~-~l~s~~~dg~v~vwd~~---~~----~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
..++.+|+ ++ +|+ +++....+|.+..|.+. .+ ++++.+.. ...+..|.......+|+.+-++.-|.-|
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEE
Confidence 34677776 34 455 55667788999888774 33 35666654 3578889998888899999999888888
Q ss_pred ECCC-----ceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 369 SMED-----RKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 369 d~~~-----~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+.+- ++.+....+ ....|..|+.-.. . +| ..++|+|.-.++...+||.+..
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~---~--~g----~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYG---S--DG----KGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----C--CC-----EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCCCCCCcceeeecccccccccCccceEEEec---C--CC----CeEEEEEcCCCCeEEEEecCCC
Confidence 8762 234444332 4567888887430 0 22 2277888878899999998753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.6 Score=44.95 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred CCCEEEEEECC--------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRD--------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~d--------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
+++.++.|+.+ ..+.+||..+++-... +.........+. .++++++.|+.+ ..|.+||.++.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45566666532 2388899887653221 111111112222 267777777764 468888887764
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.50 E-value=5 Score=43.36 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCeEEEEECC--CCCEEEEEECCCeEEEEeCCC-------C----e---------EEEeeeecCCceEEEEEc--cCCCE
Q 008939 300 GSINSIAFST--DGTYLATVGRDGYLRVFDYSK-------E----Q---------LICGGKSYYGALLCCAWS--MDGKY 355 (548)
Q Consensus 300 ~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--pdg~~ 355 (548)
..|+.|.... +...|+.+..||.|.+|.+++ . + +...++ -...++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 4567666554 556899999999999997631 0 0 111222 23468889998 77888
Q ss_pred EEEEeCCCeEEEEECCCc--ee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 356 ILTGGEDDLVQVWSMEDR--KV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~--~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
||++++...|.||-.... +. ...-..|...|-+|.|-+ +..+....-.+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~-------~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLD-------DDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeec-------CCCCCccceEEEEEeccCcEEEEEE
Confidence 999999899999866542 11 111112667888999987 3211111137888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.40 E-value=12 Score=40.19 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=97.3
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
.+..+|....=+++..-.|+|+++.. ..+..+.+....+..+.|+.+. .|++-..+|.+++|++-....+...
T Consensus 48 AV~r~p~~~~~~~~a~~~I~If~~sG---~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 48 AVTRSPSKLVPLYSARPYIRIFNISG---QLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred EEEecccccccccccceeEEEEeccc---cchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecchhhhcccc
Confidence 34444433322232223688888874 4677777766688889998763 5889999999999998753221110
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc---c-ceeeeecCC-----
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD---Q-TQFSVAHPR----- 285 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~----- 285 (548)
+ -.......|..+.+..+| +++-..+|.+.+-.-.. ......++.++. . ....+....
T Consensus 121 -v--------g~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~-~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 121 -V--------GFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVE-EPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred -c--------ccccccCceeEEEEecCc---eEEEecCCcEEEEcCCC-cchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 0 000123345555554444 23333445554432111 111111111000 0 000000000
Q ss_pred ---------------CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 286 ---------------YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 286 ---------------~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
.........+......+..+..||+.++|+--..+|.|.+-+....+..+.+.
T Consensus 188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 00011111122223677889999999999999999999999888777766655
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.27 E-value=8 Score=37.03 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=126.9
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCC-----CCCCeEEEec-----CCCCceEEEecCCCC---------CCceEEEE
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQ-----DKDPIKSIHF-----SNSNPVCHAFDQDAK---------DGHDLLIG 194 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~-----~~~~i~~~~~-----~~~~~~~~~~~p~~~---------~~~~l~~g 194 (548)
-++|+|.+.+.+...+- ...+||.+.. ....+-.+.. .+..++.+.|+.... ....++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 58999999877775554 8899998711 1112333332 234788888885422 12347889
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
+.+|+|.-|.... ++.+.......+... ....|+ .+++... +..+.++=-..++|.|||-.-..... . -
T Consensus 107 tEdGTisaW~p~v---~~t~~~~~~~~~d~s---~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~-~-g 178 (336)
T TIGR03118 107 TEDGTLSGWAPAL---GTTRMTRAEIVVDAS---QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL-P-G 178 (336)
T ss_pred eCCceEEeecCcC---CcccccccEEEEccC---CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-C-C
Confidence 9999999998532 111100111112111 123333 4555533 44233444467999999865421100 0 0
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEE
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCA 348 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~ 348 (548)
...++. -.....|........ --|+-..-.++++.=+.+---|.|-+||+. +++++.+.. .-..-+.|+
T Consensus 179 ~F~DP~-------iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 179 SFIDPA-------LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred CccCCC-------CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceee
Confidence 000000 000011111111100 001111112233333334445799999986 777766532 223345566
Q ss_pred Ecc------CCCEEEEEeCCCeEEEEECCCceeEEeccCCC------CCeEEEEEec
Q 008939 349 WSM------DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN------SWVSGVAFDS 393 (548)
Q Consensus 349 ~sp------dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~------~~V~~v~~~p 393 (548)
..| .|.+|+---.||+|..+|..+++.+..+.... ..++.|.|..
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 655 45666666679999999999998887776433 3567788854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=5.5 Score=42.71 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=99.6
Q ss_pred CceEEEEEcCC------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------CcE
Q 008939 188 GHDLLIGLNSG------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------GNL 255 (548)
Q Consensus 188 ~~~l~~g~~dg------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------g~v 255 (548)
+.++++|+..+ .|..+|.....+.....+. ....-.+++...+ . ++++|+.| .++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-----------~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-----------SPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-----------cccccccEEEECC-E-EEEEccccCCCcccceE
Confidence 55777887774 4777777663222222111 1222345555443 4 88889888 356
Q ss_pred EEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe-----EEEEeCCC
Q 008939 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY-----LRVFDYSK 330 (548)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-----v~vwd~~~ 330 (548)
..||.+.+. ....++..... +...+.. -+|.+.++|+.||. +-.||..+
T Consensus 352 e~YD~~~~~--W~~~a~M~~~R--------------------~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 352 ERYDPRTNQ--WTPVAPMNTKR--------------------SDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEecCCCCc--eeccCCccCcc--------------------ccceeEE----ECCEEEEEeccccccccccEEEecCCC
Confidence 677776532 11111111100 0011111 26778888888864 77788776
Q ss_pred CeE--EEeeeecCCceEEEEEccCCCEEEEEeCCC------eEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCC
Q 008939 331 EQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDD------LVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 331 ~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg------~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
.+- +..+....... -.-.-+|++.++|+.++ .+..||..+.+. +..+.--........+
T Consensus 406 ~~W~~va~m~~~r~~~--gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--------- 474 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGH--GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--------- 474 (571)
T ss_pred CcccccCCCCcceeee--EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---------
Confidence 543 22221111111 12233678888888654 577888877643 3333322222223333
Q ss_pred CCCccceeEEEEEEeCCCe-----EEEEECCCCeEEe
Q 008939 401 DGTAETVMYRFGSVGQDTR-----LLLWDLEMDEIVV 432 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~-----i~lwd~~~~~~~~ 432 (548)
++ ++.+.||.|+. |..+|..+.+...
T Consensus 475 ~~------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 475 NG------KIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred CC------EEEEECCccCCCccceEEEEcCCCCceeE
Confidence 55 68888887763 6678877766543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.22 E-value=6.2 Score=37.49 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE-
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA- 377 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~- 377 (548)
..+.++.|+|+.+.|++......-.|+=..+|+++.++.-. ......+.|..++++.++--.++.+.++.+.....+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 45999999999999988888877777777778888775421 2345678888899888888889999998876553221
Q ss_pred ------ecc--CC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 378 ------WGE--GH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 378 ------~~~--~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+. .+ +.....++|+| .. ..|..+-+-.-+.|+.+.
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~-------~~------~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDP-------VD------HRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCC-------CC------ceEEEEEccCCcEEEEEe
Confidence 111 23 56778899988 54 456666555556666554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.14 E-value=9 Score=37.24 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=76.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..+.-++++. +++++..-..+.-||-... . ..++ -+.-...|..|.|.|
T Consensus 144 ~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~---~--w~~~---------------------~r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 144 SGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT---T--WQPH---------------------NRNSSRRIQSMGFSP 196 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-S---S---EEE---------------------E--SSS-EEEEEE-T
T ss_pred cceeEeEEECCCCc-EEEEECcccEEEEecCCCc---c--ceEE---------------------ccCccceehhceecC
Confidence 46788888899998 7777655444446664320 0 0000 000136799999999
Q ss_pred CCCEEEEEECCCeEEEEeCC-CCeEEEe----eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe---ccC
Q 008939 310 DGTYLATVGRDGYLRVFDYS-KEQLICG----GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW---GEG 381 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~-~~~~~~~----~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~---~~~ 381 (548)
++.+.+.+ ..|.|++=+.. ..+.-.. +....-.+..++|.++++..++|+.. . .+...+.++--+. ...
T Consensus 197 ~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 197 DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTT
T ss_pred CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-c-EEEeCCCCccceECccccC
Confidence 98766644 88989888722 2221111 11122348999999998888777654 2 3344455543222 223
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
-...++.|.|.+ +. .-...+++|.|.-|
T Consensus 274 ~~~n~~~i~f~~-------~~-------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVN-------PD-------KGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEE-------TT-------EEEEE-STTEEEEE
T ss_pred CCCceEEEEEcC-------CC-------ceEEECCCcEEEEe
Confidence 455688899865 43 45566788888765
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.0091 Score=59.37 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..+.|.|. +..++++..+..|..||-..+ .... . .-.+...+++|.-+++..++.+...+
T Consensus 35 v~pi~~~w~~e---~~nlavaca~tiv~~YD~agq------~~le-~-------n~tg~aldm~wDkegdvlavlAek~~ 97 (615)
T KOG2247|consen 35 VGPIIHRWRPE---GHNLAVACANTIVIYYDKAGQ------VILE-L-------NPTGKALDMAWDKEGDVLAVLAEKTG 97 (615)
T ss_pred cccceeeEecC---CCceehhhhhhHHHhhhhhcc------eecc-c-------CCchhHhhhhhccccchhhhhhhcCC
Confidence 45677788888 444999999988888885542 1111 1 13567788999998886677788899
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.+++||+.++......+.. ...-.-+.|++....++.+...|.+.|++..+.+.
T Consensus 98 piylwd~n~eytqqLE~gg--------------------------~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 98 PIYLWDVNSEYTQQLESGG--------------------------TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred CeeechhhhhhHHHHhccC--------------------------cchHHHHhhccCCccccccccccceEEEeccchhh
Confidence 9999999863211100000 01111267888888888888999999999987776
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
+...-.|...+.+++|.+.+. .+.++.|..+.+
T Consensus 152 iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 152 IIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred hhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 655544888999999998874 455555544433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.92 E-value=8.4 Score=36.33 Aligned_cols=117 Identities=18% Similarity=0.076 Sum_probs=75.6
Q ss_pred eEEEEECCCCCEEEEEECCC--eEEEEeCCCCeEEEeeeecCC-ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGRDG--YLRVFDYSKEQLICGGKSYYG-ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
-..+.|..++.++-+.+.-| .|+.+|+.+++.+....-... ---.++.. ++++....-.++...+||.++.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44678877888888887766 699999999987655432211 11233444 334555566789999999999998888
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+. ....=+.++. || ..|+.......|.++|..+-+....+.
T Consensus 126 ~~-y~~EGWGLt~---------dg------~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 126 FP-YPGEGWGLTS---------DG------KRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE--SSS--EEEE---------CS------SCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred Ee-cCCcceEEEc---------CC------CEEEEECCccceEEECCcccceEEEEE
Confidence 86 4455677875 55 234444446789999988877666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.16 Score=54.44 Aligned_cols=99 Identities=20% Similarity=0.357 Sum_probs=62.4
Q ss_pred eEEEEEccCCCCCC-----eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 152 AIFISDLNSQDKDP-----IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 152 ~v~vwd~~~~~~~~-----i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
.+.||+++--..+. ++.+.--...+..+.|.|-..+..++.++..++.|++.......++ ++.
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~r-------- 221 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----LFR-------- 221 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH----HHH--------
Confidence 67889876422111 2222222345677788877666778888999999998887664321 111
Q ss_pred cccCcceEEEE-----------EecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 227 SVNNSRCTSVT-----------WVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 227 ~~~~~~v~~l~-----------~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
.|...+.+++ .+|||. .|+.++.||.+++|.+.-.+
T Consensus 222 -sHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 222 -SHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred -hcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeec
Confidence 1233333322 688998 89999999999988876533
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.72 E-value=4 Score=43.59 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=77.0
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
...-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.. .+|| +.+++.|-.+.|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts-----t~d~------qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS-----TPDG------QSILAVGFPHHVL 99 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----cCCC------CEEEEEEcCcEEE
Confidence 44455556666665665566789999999887543322 3578899999965 2366 6899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe--ecCC-CCeeEEEEeCCeE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH--RVHT-EPLSGLIFTQESV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~--~~h~-~~V~~l~fspd~l 498 (548)
++-...-. ... ..+.+.++..+ ..|+ .+|.+..|.+++.
T Consensus 100 l~~Q~R~d----y~~----------------------------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~ 141 (631)
T PF12234_consen 100 LYTQLRYD----YTN----------------------------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT 141 (631)
T ss_pred EEEccchh----hhc----------------------------------CCcccceeEEEEeecCCCCCccceeEecCCe
Confidence 98643200 000 00111111111 2233 5799999999986
Q ss_pred EEEECCCeEEEEeC
Q 008939 499 LTVCREGHIKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~ 512 (548)
+..+....+.|++-
T Consensus 142 LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 142 LVVGSGNQLFVFDK 155 (631)
T ss_pred EEEEeCCEEEEECC
Confidence 66666788999884
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.59 E-value=10 Score=36.40 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCC---------
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD--------- 243 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~--------- 243 (548)
.+.+.++|+|. +..-++....+...+||.....+. ...+++-.+. .+.+.......+.+.|+....
T Consensus 23 ~N~WGia~~p~---~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP-~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 23 RNAWGLSYRPG---GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIP-APPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cccceeEecCC---CCEEEecCCcceEEeecCCcccccCCccceEEEec-CCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 36789999997 544555555678889998731111 1112221111 111112345678888875432
Q ss_pred --cEEEEEeCCCcEEEEEcCCCCCC-CCCcccccccceeeeecCCCCCCCCeeEeeec-CCC-eEEEEECC--CCCEEEE
Q 008939 244 --GAFVVGHADGNLYVYEKSKDGAG-DSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGS-INSIAFST--DGTYLAT 316 (548)
Q Consensus 244 --~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~sp--~g~~l~s 316 (548)
..|+.+++||+|.-|....+... ... +..++.. .+. -..+++-. .+.+|+.
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~----------------------~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRA----------------------EIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCccccccc----------------------EEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 14678889999999985432110 000 0001000 122 23455553 3455544
Q ss_pred E-ECCCeEEEEeCCCCeEEEe--e-----eecCCc-----------eEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 317 V-GRDGYLRVFDYSKEQLICG--G-----KSYYGA-----------LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 317 ~-~~dg~v~vwd~~~~~~~~~--~-----~~~~~~-----------v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+ ...++|.|||-.-.++... + .....+ |+-..-.++.+.=+.|-.-|.|-+||+. ++.++
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~ 235 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLR 235 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEE
Confidence 4 4678999998754432111 0 111111 1111112222222334455789999986 77777
Q ss_pred ecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++. +.-..-+.|+..| ..-+.....+|+----||+|..+|..+++.+-.+..
T Consensus 236 r~as~g~LNaPWG~a~AP-------a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 236 RVASSGRLNAPWGLAIAP-------ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred EeccCCcccCCceeeeCh-------hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 764 2334456777766 211111225677666799999999999998877665
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.48 Score=30.66 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=26.3
Q ss_pred CCeEEEEECCC-C--CEEEEEECCCeEEEEeCCC
Q 008939 300 GSINSIAFSTD-G--TYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 300 ~~v~~~~~sp~-g--~~l~s~~~dg~v~vwd~~~ 330 (548)
++|.++.|+|+ + .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.43 E-value=8.6 Score=35.25 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=67.9
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee----cCCCeEEEEE
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI----CQGSINSIAF 307 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~ 307 (548)
--+.++|+.+.+.+.+.-+.+-.|.-||.+..+..... ...+..++. ..-..-.++.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-------------------r~~i~dlrk~~~~e~~~PDGm~I 219 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-------------------RKVIFDLRKSQPFESLEPDGMTI 219 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccC-------------------cceeEEeccCCCcCCCCCCcceE
Confidence 34688999887745555666777877886542211111 111111111 0112234566
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
..+|++.+++...++|..+|..+|+.+..++-....|+|++|--.
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 778999999999999999999999999998888889999999643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.51 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=26.0
Q ss_pred CceEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 008939 342 GALLCCAWSMDG---KYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 342 ~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~ 372 (548)
+.|.++.|+|+. .+|+..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.05 E-value=13 Score=36.26 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC-CCceeEEe
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM-EDRKVVAW 378 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~-~~~~~~~~ 378 (548)
+.+..+..++||++++++..-..+.-||--...-...-+.-...|..+.|.|++.+.+++ ..+.|++=+. ...+.-..
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence 778889999999999888766666778764322222223345789999999998876655 8889988872 22222111
Q ss_pred ----ccCCCCCeEEEEEec
Q 008939 379 ----GEGHNSWVSGVAFDS 393 (548)
Q Consensus 379 ----~~~h~~~V~~v~~~p 393 (548)
+..-.-.+..++|.+
T Consensus 224 ~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp -B-TTSS--S-EEEEEESS
T ss_pred ccCCcccCceeeEEEEecC
Confidence 111223478899987
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.072 Score=53.26 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=105.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
-...-...|-|++.+ ++.++.+..|..||-..+....... .+....++|..
T Consensus 34 lv~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~le~n~----------------------------tg~aldm~wDk 84 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVILELNP----------------------------TGKALDMAWDK 84 (615)
T ss_pred ccccceeeEecCCCc-eehhhhhhHHHhhhhhcceecccCC----------------------------chhHhhhhhcc
Confidence 344456778999884 8888888899999865421111111 14556788888
Q ss_pred CCCEEE-EEECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYLA-TVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l~-s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
++..++ .+-..+.+.+||+.+... +..--.|.... +.|++-...++.+-..+.+.||+..+.+.+...-.|...+
T Consensus 85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRg 162 (615)
T KOG2247|consen 85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRG 162 (615)
T ss_pred ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccce
Confidence 776544 455678899999975432 11111122233 7899999999999999999999998877766665599999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+++++.+ .+ +.+.++.|..+.+-...
T Consensus 163 tq~av~l-------Ed-------~vil~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 163 TQIAVTL-------ED-------YVILCDCDNTLSVTTQE 188 (615)
T ss_pred eEEEecc-------cc-------eeeecCcHHHHHHhhhc
Confidence 9999998 66 67777777766655443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=7.6 Score=40.77 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=53.6
Q ss_pred CCCEEEEEECCC---eEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEeccCC
Q 008939 310 DGTYLATVGRDG---YLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWGEGH 382 (548)
Q Consensus 310 ~g~~l~s~~~dg---~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~~~h 382 (548)
+++..+.|+.++ .+..||.++.+-... +...... ..+..-++++.+.|+ .+.+||.++.+- +..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 567777776543 467888876643221 1111111 122234666667664 577899877643 2333222
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCe
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDE 429 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~ 429 (548)
......+.+ +| ...+.||.+ ..+..||..+++
T Consensus 437 r~~~~~~v~---------~~------~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 437 RDNPELIIV---------DN------KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccccEEEEE---------CC------EEEEECCcCCCcccceEEEEECCCCe
Confidence 233333444 55 677777754 346677776654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=91.54 E-value=13 Score=35.29 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=66.5
Q ss_pred CeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE-CCCceeE
Q 008939 301 SINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS-MEDRKVV 376 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd-~~~~~~~ 376 (548)
.+...+++++++.++... ....|.++...... ...+. ...+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887766 33445555543222 21122 23678889999988777766666767764 3333221
Q ss_pred -Eecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEEC
Q 008939 377 -AWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDL 425 (548)
Q Consensus 377 -~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~Dg~i~lwd~ 425 (548)
..+. .-...|..+.++| || .+++... .++.|.+=-+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-------DG------~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-------DG------TRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEecccccCCceEEEEECC-------CC------cEEEEEEecCCCCeEEEEEE
Confidence 1111 1122899999999 99 4544443 3566665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.43 E-value=5.1 Score=40.28 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=84.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
.+..+.+...|.+.-|.+... +..+..... . ..+++|.+|.|++|.+ .|++--.|..|.+++...+...
T Consensus 33 aNkqlfavrSggatgvvvkgp----ndDVpiSfd--m---~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~- 101 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGP----NDDVPISFD--M---DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ- 101 (657)
T ss_pred CcceEEEEecCCeeEEEEeCC----CCCCCceee--e---cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-
Confidence 345666677777777776642 122211111 1 2467999999999999 9999999999999997432110
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC-eEEEeeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE-QLICGGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~ 346 (548)
. ...+..+.....|.++.|+.+ ..+|.....| +-+|-.... +.+...+.|...|.-
T Consensus 102 l---------------------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnW 158 (657)
T KOG2377|consen 102 L---------------------EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNW 158 (657)
T ss_pred h---------------------HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccE
Confidence 0 001111222356889999876 5667666555 566655432 223445667777888
Q ss_pred EEEccCCCEEEEE
Q 008939 347 CAWSMDGKYILTG 359 (548)
Q Consensus 347 l~~spdg~~l~sg 359 (548)
-.|.++-+.++-+
T Consensus 159 y~yc~et~v~LL~ 171 (657)
T KOG2377|consen 159 YMYCPETAVILLS 171 (657)
T ss_pred EEEccccceEeee
Confidence 8888887754433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.10 E-value=28 Score=38.40 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=52.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc---ceeeeecCCCCCCCCeeEeeecCCCeEEEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ---TQFSVAHPRYSKSNPIARWHICQGSINSIA 306 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 306 (548)
.-.|..|.++|+|. +|+..+..| |.|-.+...-.....+...+.. ..+.++. ...-..+...|..+.
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~--------~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE--------RFFTSNSSLEIKQVR 153 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech--------hhccCCCCceEEEEE
Confidence 34788999999999 666666655 4455543210000011100000 0000000 000012236788999
Q ss_pred ECCC---CCEEEEEECCCeEEEEeCCCC
Q 008939 307 FSTD---GTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 307 ~sp~---g~~l~s~~~dg~v~vwd~~~~ 331 (548)
|+|. +..|++-+.|+.+|+||+...
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9995 578999999999999999643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.73 E-value=27 Score=37.65 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=25.9
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
...+-.+.|+.+.. |++-..||++++|++.-
T Consensus 83 ~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 83 HGELIGMGWSDDEE--LICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCCeeeecccCCce--EEEEeccceEEEeecch
Confidence 44788999998875 78888999999999863
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.64 E-value=9.5 Score=40.89 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=69.7
Q ss_pred EEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEc--cCCCEEEEEeCCCeEEEEECC-----C---
Q 008939 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWS--MDGKYILTGGEDDLVQVWSME-----D--- 372 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~s--pdg~~l~sgs~dg~I~vwd~~-----~--- 372 (548)
-+.-+.-++.-++-.....+.|||.+.+.+..... ...+.|.++.|. ||++.+++-+-.+.|.+|.-. .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33334444433333344579999999887654422 346789999985 688888888888999998542 1
Q ss_pred -ceeEEe--ccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 373 -RKVVAW--GEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 373 -~~~~~~--~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
..++.. +..|+ .+|....|.+ || .+++.+ ++++.|+|-.-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~-------~G------~LvV~s--GNqlfv~dk~~~ 158 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLK-------DG------TLVVGS--GNQLFVFDKWLD 158 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEec-------CC------eEEEEe--CCEEEEECCCcC
Confidence 122222 23444 5788999998 88 333333 478898875433
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.41 E-value=9.3 Score=39.07 Aligned_cols=152 Identities=16% Similarity=0.354 Sum_probs=89.1
Q ss_pred EEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC----CCceEEEEEcCCcEEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK----DGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~----~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
+-.+.+..+|...++. .++--|++.+. .|.....+... .+.|.|.-+ ....-++|.++..|.-.|.+..
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~- 547 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR- 547 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEeccccc-
Confidence 3445566666665443 66666777644 66666655433 667777643 1234678889988888887652
Q ss_pred ccccccee--eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 210 QDVGKKLV--GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 210 ~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
+.++. ....+. .+....|..-...| ++++++..|.|++||-- +.+....+|.+.
T Consensus 548 ---gNKi~v~esKdY~-----tKn~Fss~~tTesG--yIa~as~kGDirLyDRi-g~rAKtalP~lG------------- 603 (776)
T COG5167 548 ---GNKIKVVESKDYK-----TKNKFSSGMTTESG--YIAAASRKGDIRLYDRI-GKRAKTALPGLG------------- 603 (776)
T ss_pred ---CCceeeeeehhcc-----ccccccccccccCc--eEEEecCCCceeeehhh-cchhhhcCcccc-------------
Confidence 12221 111111 12222333222233 89999999999999953 223333333322
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
..|..+..+.+|+++++.+ ..+|.+-|+.
T Consensus 604 ------------~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 604 ------------DAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ------------cceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 6788899999998776554 3467777764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=9.4 Score=40.09 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=32.4
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
++++.+.| |.+.+||.++.+-. ..+....... +++ .-++++.++|+.+ ..|.+||.++.+
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 45555555 35778998766432 2222111112 222 2367788888754 346667766554
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.01 E-value=4.8 Score=45.80 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=93.5
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEE--------ecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA--------FDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~--------~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
+.+.+-|.=.+.....++.+.+|++++.. ....+..-...|..|. |.|. -.+|++-..--+|.++-+
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~---IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPE---IQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhh---hheeEEecccceEEEEEE
Confidence 34445555455555666799999999843 3333332223333332 3333 334555555567777766
Q ss_pred eecccccccceeeeeeeccCCc--ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC-cccccccceeeee
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGS--VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS-FPVIKDQTQFSVA 282 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~ 282 (548)
.-......... ++.... .....|+|+....+|+ +|+ ++.||.|+-.-.......... +..+.....
T Consensus 157 ~~~~~~~~~~~-----f~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s---- 225 (1311)
T KOG1900|consen 157 SFDEFTGELSI-----FNTSFKISVDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKS---- 225 (1311)
T ss_pred EeccccCcccc-----cccceeeecCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchh----
Confidence 54211111111 111111 1356788999777886 555 556665553333322111111 000000000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.-.+.-.........+..+|..++....-..+.+-+..+.|++||+..
T Consensus 226 ~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 226 VLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000000001111134568999999999888999999999999999975
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.2 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=50.1
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEEee-------e-------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLICGG-------K-------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-------~-------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457889999999999999999988765332 1 2445688888888888777664 57788888765
Q ss_pred ce
Q 008939 373 RK 374 (548)
Q Consensus 373 ~~ 374 (548)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.90 E-value=18 Score=34.22 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=95.8
Q ss_pred ceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
..-.+.|..++. ++-+.+.-| .|+.+|+.++. .....+. +. .---..++...
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~-~~~~~~l---~~---------------------~~FgEGit~~~ 99 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGK-VLQSVPL---PP---------------------RYFGEGITILG 99 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSS-EEEEEE----TT---------------------T--EEEEEEET
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCc-EEEEEEC---Cc---------------------cccceeEEEEC
Confidence 345777877776 667766666 68888887632 1110000 00 00111233332
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-----CC
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NS 384 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~ 384 (548)
| ++....-.++...+||..+-+.+..+. +.+.=..++ .|++.|+.......|+++|.++.+.+..+.-. -.
T Consensus 100 d-~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 D-KLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp T-EEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred C-EEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 2 333444478899999999988887765 334444555 56777777777789999999887766655422 23
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.++-+.|- +| ...|=.=....|...|..+|+++..+..
T Consensus 176 ~LNELE~i--------~G------~IyANVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 176 NLNELEYI--------NG------KIYANVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp -EEEEEEE--------TT------EEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred CcEeEEEE--------cC------EEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence 56667776 77 5666666778899999999998876654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.1 Score=44.56 Aligned_cols=181 Identities=19% Similarity=0.278 Sum_probs=102.7
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE-EEEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT-SVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~p~~~ 243 (548)
.++.+......+..+-..|+ ++.|++-+. .++.++++.+...+ .+++..... .. ....|+ .+.....+.
T Consensus 212 ~i~~L~~~~~~v~qllL~Pd---g~~LYv~~g-~~~~v~~L~~r~l~-~rkl~~dsp---g~--~~~~Vte~l~lL~Gg~ 281 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPD---GKTLYVRTG-SELVVALLDKRSLQ-IRKLVDDSP---GD--SRHQVTEQLYLLSGGF 281 (733)
T ss_pred hhhhcCCCccchHhhEECCC---CCEEEEecC-CeEEEEeecccccc-hhhhhhcCC---Cc--hHHHHHHHHHHHhCce
Confidence 34445445566777788888 666666555 67888888763222 122221100 00 011222 122223344
Q ss_pred cEEEEEeCCCcEEEE-EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 244 GAFVVGHADGNLYVY-EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 244 ~~l~s~~~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
-|++++.||-|.-| |.+.++... + +.++.++....++..+.=..+.+-+++-+..|+
T Consensus 282 -SLLv~~~dG~vsQWFdvr~~~~p~--l-------------------~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~ 339 (733)
T COG4590 282 -SLLVVHEDGLVSQWFDVRRDGQPH--L-------------------NHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT 339 (733)
T ss_pred -eEEEEcCCCceeeeeeeecCCCCc--c-------------------eeeeccccCcccceeeccccccceEEEEcCCCc
Confidence 68889999988876 666543311 1 112222222233443332334456778888899
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
+.++.....+.+..-.. ...+.-+++||.+.+|++- +.+.|+++.+++..+...+
T Consensus 340 L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 340 LQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred eeeeecccCcceehhhh-hcCcceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 98887655554433232 2356778999999988875 5678999999887654443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.38 E-value=14 Score=30.89 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=63.9
Q ss_pred eeEEeCCCCCEEEEec-CCeEEEEEccCC------CCCCeEEEecCCCCceEEEecCCC--CCCceEEEEEcCCcEEEEE
Q 008939 134 TNTNFDGKGTYIIFNV-GDAIFISDLNSQ------DKDPIKSIHFSNSNPVCHAFDQDA--KDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~-~d~v~vwd~~~~------~~~~i~~~~~~~~~~~~~~~~p~~--~~~~~l~~g~~dg~I~iwd 204 (548)
+...|+.....|++++ .+.|.|.+.... ...++..+.+.. .+++++-.+-. .+...|++|+. ..|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-EITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-ceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3456777777676655 448999987643 234677777544 78887655532 22345555554 5888999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKS 261 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~ 261 (548)
+... ..+. .++ -.+.|++|.+-.-+ ..++++| .+..|.-||.+
T Consensus 80 V~~N-----~d~F-----yke---~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 80 VENN-----SDLF-----YKE---VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred cccC-----chhh-----hhh---CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 9873 2221 111 24667777774322 2144444 44556666544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.72 E-value=11 Score=38.48 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCCeeEeeecCCCeEEEEECCCC--------CEEEEEECCCeEEEEeCCC-CeEEEe--eeec--CCceEEEEEccCCCE
Q 008939 289 SNPIARWHICQGSINSIAFSTDG--------TYLATVGRDGYLRVFDYSK-EQLICG--GKSY--YGALLCCAWSMDGKY 355 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g--------~~l~s~~~dg~v~vwd~~~-~~~~~~--~~~~--~~~v~~l~~spdg~~ 355 (548)
.+.+..|..|..- -+.|.|+. +.|+ |-.+..|.-.|.+- +..+.. .+.+ .....|..-..+| +
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesG-y 575 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESG-Y 575 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhccccccccccccccCc-e
Confidence 3557778877655 46677743 2344 44455566566653 322211 1111 1233344444444 8
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+++..|-|++||--..+...-+.+....|..|.... +| .++++.+ ...|.+-|++
T Consensus 576 Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta-------~G------k~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 576 IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTA-------NG------KHILATC-KNYLLLTDVP 632 (776)
T ss_pred EEEecCCCceeeehhhcchhhhcCcccccceeeeEeec-------CC------cEEEEee-cceEEEEecc
Confidence 99999999999999765555556677788899999988 88 4555444 3578888875
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.45 E-value=25 Score=38.69 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
-.|..+.++|+|++|+..+..| |.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4688899999999999988765 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.32 E-value=5.3 Score=36.92 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=51.2
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEec-------c-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-------E-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
+..++++|++-+.+|.+++||+.+++.+..- . .....|..+..+. +| .-|++-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-------~G------~PiV~l 84 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-------NG------VPIVTL 84 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-------CC------CEEEEE
Confidence 4567889999999999999999988754322 1 2456778888877 77 344444
Q ss_pred eCCCeEEEEECCCCeEEee
Q 008939 415 GQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~ 433 (548)
.+|....||...+.-+..
T Consensus 85 -sng~~y~y~~~L~~W~~v 102 (219)
T PF07569_consen 85 -SNGDSYSYSPDLGCWIRV 102 (219)
T ss_pred -eCCCEEEeccccceeEEe
Confidence 467889999887665543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=54 Score=36.21 Aligned_cols=68 Identities=7% Similarity=0.100 Sum_probs=43.1
Q ss_pred CceeEEeCCCCCEEEEecC---C---eEEEEEccCCCCCCe-EEEecCCCCceEEEecCCCCCCceEEEEEcC------C
Q 008939 132 SMTNTNFDGKGTYIIFNVG---D---AIFISDLNSQDKDPI-KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS------G 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~---d---~v~vwd~~~~~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d------g 198 (548)
.+..+.++|||++|+++.+ + .|++.|+.++. .+ ..+.. .. ..++|.++ +..|+....+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~--~~-~~~~w~~D---~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN--VE-PSFVWAND---SWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC--cc-eEEEEeeC---CCEEEEEEecCCCCCCC
Confidence 3456788999999998543 2 68899998754 21 11111 11 45899888 5556555442 3
Q ss_pred cEEEEEeee
Q 008939 199 DVYSVSLRQ 207 (548)
Q Consensus 199 ~I~iwdl~~ 207 (548)
.|+.+++.+
T Consensus 200 ~v~~h~lgt 208 (686)
T PRK10115 200 QVWRHTIGT 208 (686)
T ss_pred EEEEEECCC
Confidence 577788776
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.84 E-value=34 Score=33.80 Aligned_cols=122 Identities=17% Similarity=0.279 Sum_probs=67.9
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCc------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGN------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.-+.+..|.+.|++. .+++-+.+|. ++.+++.............. ...+... ...++.. -.-..
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~---~G~~~~~---~~~D~ 87 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD---MIPLRDP---DGQPFPK---NGLDP 87 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc---ceeccCC---CCCcCCc---CCCCh
Confidence 456788999997666 6777777777 77666654211111111000 0000000 0111100 01245
Q ss_pred EEEEECCCCCEEEEEECC------CeEEEEeCCCCeEEEee---------------eecCCceEEEEEccCCCEEEEEeC
Q 008939 303 NSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLICGG---------------KSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~~~~---------------~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
.+|++.+++.++++--.+ -.|+.++.. ++.+..+ ......+-.++++|||+.|+++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 578886788777776666 678888876 5543332 113456889999999996666543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.96 E-value=5.7 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
..|.+++|+| -|-+.....+|+....++.|.||.-...
T Consensus 86 ~~vv~~aWSP-------~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSP-------SGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECC-------CCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 4789999999 4422333368999999999999987643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.96 E-value=26 Score=31.65 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEee----eec-CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc---
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGG----KSY-YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--- 380 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~----~~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~--- 380 (548)
.|++.|+.+....+++.-|.++-....+. .+- -..++.+.|- ||...|=--.+..|...|.++|+.+.++.
T Consensus 138 ~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 138 SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 35555666655567777776643332222 110 1223445554 66666655566677777888887776553
Q ss_pred ---------CCCCCeEEEEEec
Q 008939 381 ---------GHNSWVSGVAFDS 393 (548)
Q Consensus 381 ---------~h~~~V~~v~~~p 393 (548)
.|..-.+.+++.|
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~ 238 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDP 238 (262)
T ss_pred CchhcCccccccccccceeecC
Confidence 2455678899988
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=85.63 E-value=66 Score=35.96 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=114.7
Q ss_pred CEEEEecCCeEEEEEccC-CCCCCeE-----EEecCCCCceEEEecCCCCCCceEEEEEcC---CcEEEEEeeeccc---
Q 008939 143 TYIIFNVGDAIFISDLNS-QDKDPIK-----SIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GDVYSVSLRQQLQ--- 210 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~-~~~~~i~-----~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~I~iwdl~~~~~--- 210 (548)
..++......+++|=.+. .+...+. .+......++..++.+... +..++++..+ +.|++|.+.-.-.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~-g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDN-GKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCC-CCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 345566666777776632 2211221 2223455667777774433 4445555444 7899887654211
Q ss_pred ---cccc-ceeeeeeeccC---C-----------cccCcceEEEEEec----C--CCcEEEEEeC----CCcEEEEEcCC
Q 008939 211 ---DVGK-KLVGAHHYNKD---G-----------SVNNSRCTSVTWVP----G--GDGAFVVGHA----DGNLYVYEKSK 262 (548)
Q Consensus 211 ---~~~~-~~~~~~~~~~~---~-----------~~~~~~v~~l~~~p----~--~~~~l~s~~~----dg~v~vwd~~~ 262 (548)
+... +.....+.... . ......++.+.|.+ . ...++++... ...|+-|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 1100 11111111000 0 01234788888876 2 2225555432 34699999986
Q ss_pred CCCCC-CCcccccccceeeeecCCCCCCCCeeEeeec-----CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 263 DGAGD-SSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
..... ..++....... ......+...|+.. ...|.+++...-+.+++....||+|.++|-.+.+.+..
T Consensus 223 ~~~~lh~~F~ql~s~~~------~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~ 296 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKN------SSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNE 296 (753)
T ss_pred cCcccchhhhhcCCCCc------CCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcc
Confidence 44221 11111110000 00112223333332 36788888777778999999999999999887654433
Q ss_pred e----ee---------------cCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 337 G----KS---------------YYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 337 ~----~~---------------~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
. .. ....+..++|||.+-.++.-..++.+.
T Consensus 297 ~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 297 TRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 2 10 111334578999998888888888866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=85.48 E-value=46 Score=34.03 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---C-CCcEEEEEeCCCcEEEEEcCC
Q 008939 187 DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---G-GDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 187 ~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~-~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+...|++|+.+|.++||+......+....+.. .. -+.+|..|..-. . ..+.||+=+ -..+.||.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~-------l~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~ 106 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQ-------LKDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSL 106 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-Ee-------cCCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEe
Confidence 35689999999999999985432222222222 22 356777776643 2 222455544 36788888743
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC--CCeEEEEECC----C-CCEEEEEECCCeEEEEeCCCCeEEE
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ--GSINSIAFST----D-GTYLATVGRDGYLRVFDYSKEQLIC 335 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp----~-g~~l~s~~~dg~v~vwd~~~~~~~~ 335 (548)
..... ....+ ..+.....|. .....++.-| . ..+|++-+.||.+.+|+-+.-...+
T Consensus 107 ~~g~~------~~g~~-----------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 107 VDGTV------EHGNQ-----------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred cCCCc------ccCcE-----------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 21110 00000 0111222221 2233333322 2 3578889999999999987554444
Q ss_pred eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 336 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 336 ~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
.+.. .--.-.+.|.+.-..+++++.+..|..|..
T Consensus 170 ~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4433 222335788888889999999999999875
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.48 E-value=30 Score=35.02 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=74.8
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC-c
Q 008939 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED-R 373 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~ 373 (548)
+++|.++.||+|.+.||+--.|.+|.+++..-.+. ..+.+.....|....|+.+-+ +|.-.. .-+.+|-+.. .
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~-~G~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITD-QGIEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEec-CCeEEEEEchhh
Confidence 48999999999999999999999999999843322 222333445688999987744 444433 3355554432 2
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+.+...+.|...|.=-.|++ +- ..-+|+++-..+.+.=+-++++..
T Consensus 144 rslRlVks~~~nvnWy~yc~-------et----~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCP-------ET----AVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhcccCccEEEEcc-------cc----ceEeeeccccccccccEEEeecee
Confidence 33444556777777777877 44 112334443555555555555543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.46 E-value=23 Score=32.28 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=40.3
Q ss_pred CEEEEEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeCC------CeEEEE
Q 008939 312 TYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGED------DLVQVW 368 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d------g~I~vw 368 (548)
..|+.+.....|.+|++. ..+++..+..- +.|..+.++..|++|++--++ ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 445444667789999998 33456666644 789999999999999985432 256665
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.42 E-value=41 Score=33.46 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=18.4
Q ss_pred eEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 322 YLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 322 ~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+.+||.++.+-. ..+.. ..-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence 4567887655321 11111 111122334466777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.34 E-value=9.9 Score=40.71 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=28.4
Q ss_pred CCeEEEEECC----CCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 300 GSINSIAFST----DGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 300 ~~v~~~~~sp----~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
..+..++++. +..+|++.+.|+.||+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455566665 6789999999999999999999996654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.04 E-value=71 Score=35.83 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=78.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC-CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG-DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
...+..+++|+|.....||+-...|+..||++....+. ...+.......... ..+.++ ......+.|
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-----~~d~~e-------~s~w~rI~W 211 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-----IFDPEE-------LSNWKRILW 211 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-----cCCCcc-------cCcceeeEe
Confidence 35678899999988779999999999999999221111 01111100000000 000011 144567889
Q ss_pred CCCCCEEEEEECCCeEEEEeCCCCeEEE--eeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC
Q 008939 308 STDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED 372 (548)
Q Consensus 308 sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~ 372 (548)
.++-+.|++++. ..+.++|+++..... ........|..+.-+|+.. +++.-. ...|...++..
T Consensus 212 ~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 888888888764 578999998775422 1223456798998888722 222222 25777778776
|
These proteins are found in fungi. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.62 E-value=45 Score=33.14 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCCEEEEEECC-----------CeEEEEeCCCCeEEEe--ee---ecCCceEEEEEccCCCEEEEEeCC-----------
Q 008939 310 DGTYLATVGRD-----------GYLRVFDYSKEQLICG--GK---SYYGALLCCAWSMDGKYILTGGED----------- 362 (548)
Q Consensus 310 ~g~~l~s~~~d-----------g~v~vwd~~~~~~~~~--~~---~~~~~v~~l~~spdg~~l~sgs~d----------- 362 (548)
++++++.|+.+ ..|.+||..+.+-... .. ...... +++ .-++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccce
Confidence 45666666643 2477888876643221 10 001111 222 2356666665532
Q ss_pred --CeEEEEECCCcee
Q 008939 363 --DLVQVWSMEDRKV 375 (548)
Q Consensus 363 --g~I~vwd~~~~~~ 375 (548)
..|.+||+.+.+-
T Consensus 215 ~~~~v~~yd~~~~~W 229 (341)
T PLN02153 215 ESNAVQFFDPASGKW 229 (341)
T ss_pred ecCceEEEEcCCCcE
Confidence 4588889887643
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=84.34 E-value=52 Score=34.54 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=44.0
Q ss_pred EEEEECCCCCEEEEEEC-------------CCeEEEEeCCCCeEEEeeee--cC-------------------------C
Q 008939 303 NSIAFSTDGTYLATVGR-------------DGYLRVFDYSKEQLICGGKS--YY-------------------------G 342 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~-------------dg~v~vwd~~~~~~~~~~~~--~~-------------------------~ 342 (548)
+.+.+-|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 35667788888887761 12355555 66666544221 10 1
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCC
Q 008939 343 ALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 343 ~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~ 384 (548)
-++++.+.+ ++.+|+++-.-..|...|.++++....+-.|..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 378899998 555555554455899999888888777765543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.12 E-value=47 Score=32.98 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCeEEEeee-e--cCC-ceEEEEEccCCCEEEEEeCC--------------CeEEEEECCCce
Q 008939 321 GYLRVFDYSKEQLICGGK-S--YYG-ALLCCAWSMDGKYILTGGED--------------DLVQVWSMEDRK 374 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~-~--~~~-~v~~l~~spdg~~l~sgs~d--------------g~I~vwd~~~~~ 374 (548)
..|.+||+.+.+-...-. + ... ...++ ...++++++.|+.. ..|..+|+++.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 358889988765332111 0 011 11122 22356777777752 256777876654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=52 Score=33.10 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
+|+ |+.++.++.+..+|.++++++....... ..+..-..-.++ .+..++.++.+.-.|-.+++.+-....-.. +..
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~ 187 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LSL 187 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-ccc
Confidence 665 7778889999999999999988876554 112222223344 344444788999989888877554332111 110
Q ss_pred EE-EecCCCCCCCCCCccceeEEEEEEeC--CCeEEEEECCCCeEEeeeec
Q 008939 389 VA-FDSYWSQPNSDGTAETVMYRFGSVGQ--DTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 389 v~-~~p~~~~~~~dg~~~~~~~~l~s~~~--Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.. ..| -..++ .+..+.. ++.+.-.|..+|......+.
T Consensus 188 ~~~~~~----~~~~~-------~vy~~~~~~~~~~~a~~~~~G~~~w~~~~ 227 (370)
T COG1520 188 SIYGSP----AIASG-------TVYVGSDGYDGILYALNAEDGTLKWSQKV 227 (370)
T ss_pred ccccCc----eeecc-------eEEEecCCCcceEEEEEccCCcEeeeeee
Confidence 00 000 00133 3444444 66788888888888777543
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=83.58 E-value=1.1e+02 Score=36.70 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc--ccCCCCcEEEecCCCC-ceEeeecccccccC
Q 008939 485 TEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES--QSSSSETVLSTSSKDK-PLLSSKVVTSSYRQ 548 (548)
Q Consensus 485 ~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~~~s~d~~-~l~s~~~~g~~~~~ 548 (548)
...|+.++.-.+ .+++....|.|....-++.... ..+....|..++-|.+ .|..-+..|.+|++
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 456888887665 5999999999999984443222 2233455656665554 35555566777764
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.49 E-value=53 Score=33.07 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC--CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC-Ce
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY--GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS-WV 386 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~-~V 386 (548)
++ .++.+..||.|.-+|.++++.+.....-. ..+.+-.+..+|+ |+.++.++.+..+|.++++.+-....... .+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 34555788888888998888664433221 2233333333776 77888899999999988988777665541 11
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
..-..-. ++ .+...+.|+.+...|..+++.+...+..
T Consensus 146 ~~~~v~~-------~~-------~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 146 ASPPVVG-------DG-------TVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred ecCcEEc-------Cc-------EEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 1111111 44 4555557899999999999988876653
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=58 Score=32.88 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=18.0
Q ss_pred EEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 323 LRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 323 v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
+.+||+++.+-. ..+.. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 457888765432 11111 111122333456777777753
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=82.34 E-value=53 Score=32.29 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=13.3
Q ss_pred cCCCcEEEEEeCCCc----EEEEEcCC
Q 008939 240 PGGDGAFVVGHADGN----LYVYEKSK 262 (548)
Q Consensus 240 p~~~~~l~s~~~dg~----v~vwd~~~ 262 (548)
.++. +++.|+.++. +.+||..+
T Consensus 170 ~~~~-iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 170 LQNE-LYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ECCE-EEEEcCCCCccccceEEEecCC
Confidence 3455 7777776542 45677664
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.92 E-value=47 Score=38.29 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+..+..++|+|. ..++++++.+|.|+++-...
T Consensus 35 ~~~~~~~afD~~---q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPT---QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccc---cceEEEEEecccEEEecccc
Confidence 457788899998 88999999999999986543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=81.66 E-value=30 Score=28.94 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=73.1
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCe--------EEEeeeecCCceEEEEEcc-----CCCEEEEEeCCCeEEEEECC
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQ--------LICGGKSYYGALLCCAWSM-----DGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~l~~sp-----dg~~l~sgs~dg~I~vwd~~ 371 (548)
-.|.....-|+.++.-|.|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...|..||++
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555678888888999999876432 233333 345677776443 234677775 5689999998
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+..-+..- .-.+.|.++.+-..-.. + .-++..+.+..|.-||..-.+...++
T Consensus 82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~---~-------~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYK-EVPDGVNAIVIGKLGDI---P-------SPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhh-hCccceeEEEEEecCCC---C-------CcEEEECceEEEEEeCCCCcEEEEEe
Confidence 77654332 24467888887431000 1 23555666788888887766665543
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=81.64 E-value=67 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
..|..++..+..+.|++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899988889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=92 Score=34.43 Aligned_cols=195 Identities=9% Similarity=0.001 Sum_probs=92.7
Q ss_pred ceEEEecCCCCCCceEEEEEcC-C----cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 176 PVCHAFDQDAKDGHDLLIGLNS-G----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 176 ~~~~~~~p~~~~~~~l~~g~~d-g----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
+..+.++|+ +++|+.+... | +|++.|+.+ +..+.... .... ..++|.++++.++++..
T Consensus 129 l~~~~~Spd---g~~la~~~d~~G~E~~~l~v~d~~t-----g~~l~~~i--------~~~~-~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPD---NTIMALAEDFLSRRQYGIRFRNLET-----GNWYPELL--------DNVE-PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EeEEEECCC---CCEEEEEecCCCcEEEEEEEEECCC-----CCCCCccc--------cCcc-eEEEEeeCCCEEEEEEe
Confidence 345567777 6677766544 3 377777754 22111100 1111 46999999985555554
Q ss_pred CC-----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE-EEEECCCCCEEEEEEC---CC
Q 008939 251 AD-----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFSTDGTYLATVGR---DG 321 (548)
Q Consensus 251 ~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~~~---dg 321 (548)
.+ ..|+.+++.+... .....+........ .+..+.++++++..+. ++
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~------------------------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 247 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPAS------------------------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTS 247 (686)
T ss_pred cCCCCCCCEEEEEECCCChh------------------------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccc
Confidence 33 3566677665211 11112222112222 2333447777665443 45
Q ss_pred eEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCceeEEeccCC-C-CCeEEEEEecC
Q 008939 322 YLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGH-N-SWVSGVAFDSY 394 (548)
Q Consensus 322 ~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~~~~~~~~~h-~-~~V~~v~~~p~ 394 (548)
.+.+++.. .++....+..-.+....+. +..+.+++.... ...|...++.+......+..+ . ..|..+.+..
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 248 EVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT- 325 (686)
T ss_pred cEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-
Confidence 78888842 3332222222222222222 223333332221 223444455521112233334 3 3677777764
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ .++++...++.-+++-+.
T Consensus 326 ------~-------~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 326 ------D-------WLVVEERQRGLTSLRQIN 344 (686)
T ss_pred ------C-------EEEEEEEeCCEEEEEEEc
Confidence 3 477777778776665443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=81.12 E-value=7.8 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=23.8
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCceeEEeccC
Q 008939 351 MDGKYILTGG-EDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 351 pdg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~ 381 (548)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666654 578999999998888777664
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.01 E-value=6.9 Score=41.92 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCCCEEEEEECCCeEEEEeCCC----CeEEEe--eee--------------------cCCceEEEEEcc----CCCEEEE
Q 008939 309 TDGTYLATVGRDGYLRVFDYSK----EQLICG--GKS--------------------YYGALLCCAWSM----DGKYILT 358 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~----~~~~~~--~~~--------------------~~~~v~~l~~sp----dg~~l~s 358 (548)
++...|+.+..||.+....... +..... +.. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566788888898888877654 111111 000 113455666666 6679999
Q ss_pred EeCCCeEEEEECCCceeEEec
Q 008939 359 GGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~ 379 (548)
-+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=64 Score=32.01 Aligned_cols=109 Identities=18% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~ 375 (548)
..++++.+.++++.++++ ..|.+++=....++.-..... ....+..+.+.+++..++++ .+|.|. ...+.++.
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC
Confidence 578899999998876665 567665433333332111111 12357888999988765554 566554 34444443
Q ss_pred EEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 376 VAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 376 ~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
-.... .-......+.|.. ++ .....+..|.|.-|+-
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLD-------PE-------KGFVLGQRGVLLRYVG 330 (334)
T ss_pred CeECCcCCCCCcceEEEEEeC-------CC-------ceEEECCCceEEEecC
Confidence 22222 2224577777764 44 4556777888887763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 548 | ||||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 9e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 9e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 6e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-04 |
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-18
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
++ FS DG +A+ G D L+VF + + K++ +LCCA+S D YI T
Sbjct: 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
D V++W K+V + H+ V+ F + + + D
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF-------TNKSNHLLL----ATGSNDF 723
Query: 419 RLLLWDLEMDEIVVPLR 435
L LWDL E +
Sbjct: 724 FLKLWDLNQKECRNTMF 740
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++ S Y+A DG +++ + ++ G + A+ ++ DGK +++
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
ED ++QVW+ + V + H V D R S D
Sbjct: 1021 SSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRL-------LQDS-------RLLSWSFDG 1065
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +W++ I
Sbjct: 1066 TVKVWNVITGRIERDFT 1082
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 5e-17
Identities = 55/358 (15%), Positives = 110/358 (30%), Gaps = 80/358 (22%)
Query: 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD----VYSVSLRQQLQDVGKKLVGA 219
+ + HF+N + LL+ S D ++ ++ ++ + G
Sbjct: 700 EQVNCCHFTN-------------KSNHLLLATGSNDFFLKLWDLNQKECRN----TMFG- 741
Query: 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278
H SVN + P D + ADG L +++ + + +
Sbjct: 742 -H---TNSVN-----HCRFSP--DDELLASCSADGTLRLWD-VRSAN----------ERK 779
Query: 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG- 337
+ S + + ++S DG + ++ + +FD L+
Sbjct: 780 SINVKRFFLSSEDPPEDV--EVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIH 836
Query: 338 KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQ 397
++ + C +S + V++W+++ R VA GH SWV GV F
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF------ 890
Query: 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ---SAHW 454
+ DG+ F + D + +W+ + + F +
Sbjct: 891 -SPDGS------SFLTASDDQTIRVWETKKVCKNSAIVLKQ-EIDVVFQENETMVLAVDN 942
Query: 455 DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIW 510
LQ + + +S + E V +G IKI
Sbjct: 943 I-----RGLQ----LIAGKTGQID---YLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 5e-16
Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 24/137 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---------GALLCCAW 349
G + AFS DG LAT +G +R+++ S QL+ G + +
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
S D K +++ G ++ W++ + + + + + D
Sbjct: 1187 SPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHV-------SPDFR------ 1231
Query: 410 RFGSVGQDTRLLLWDLE 426
+ +V L + +
Sbjct: 1232 TYVTVDNLGILYILQVL 1248
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 19/137 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
Q + + G ++ +L+ + A+ +S DG+ I +
Sbjct: 579 QAKLQAKQEGDTGRLYLEWINKKTIKNLS----RLVVRPHT--DAVYHACFSQDGQRIAS 632
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D +QV+ E + + + H V AF +SD + + D
Sbjct: 633 CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF-------SSDDS------YIATCSADK 679
Query: 419 RLLLWDLEMDEIVVPLR 435
++ +WD ++V
Sbjct: 680 KVKIWDSATGKLVHTYD 696
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G + + FS D L + G GYL+ ++ + + L S D + +T
Sbjct: 1178 GGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1235
Query: 359 GGEDDLVQVWSMED 372
++ + + +
Sbjct: 1236 VDNLGILYILQVLE 1249
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 8e-17
Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 21/145 (14%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-------GALLCCAWSM 351
++S+ ++ DG+ A+ G DG + +++ + G++ WS
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
DG I + D +++W++ KV G +
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI-------IWTKQ------A 296
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLR 435
S+ + + + E+ I
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRY 321
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 18/133 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKY 355
I S+AFS +G +L + + + + + S+ + C +WS D
Sbjct: 491 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 550
Query: 356 ILTGGEDDLVQVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
+ TG D+ V VW+M + H + T S
Sbjct: 551 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-------WLNET------TIVS 597
Query: 414 VGQDTRLLLWDLE 426
GQD+ + W++
Sbjct: 598 AGQDSNIKFWNVP 610
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 9e-16
Identities = 19/163 (11%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYIL 357
GS+ + +S DGT +A+ D +++++ + ++ + ++
Sbjct: 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
+ + + + E + GHN ++ ++ ++DG S +
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSS-------SADGK------TLFSADAE 345
Query: 418 TRLLLWDLEMDEIVVPLRRGPLGG--SPTFSTGSQ--SAHWDN 456
+ WD+ ++ + WD+
Sbjct: 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD 388
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 299 QGSINSIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356
G + I++ ++ +A VG R+ + VF + A+ + +
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162
Query: 357 L-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
+ +G +D+ V ++ K + H +V V + N DG+ F S G
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-------NPDGS------LFASTG 209
Query: 416 QDTRLLLWDLE 426
D ++L++
Sbjct: 210 GDGTIVLYNGV 220
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILT 358
+ + +A S D ++A G+D + V+ S + + + A+S +G +++
Sbjct: 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508
Query: 359 GGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
+ V +S+ + +A H + V+ V++ + D R +
Sbjct: 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW-------SPDNV------RLATGS 555
Query: 416 QDTRLLLWDLE 426
D +++W++
Sbjct: 556 LDNSVIVWNMN 566
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 16/141 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
S G Y A+ G +R++D ++ I + G + +W + K I
Sbjct: 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118
Query: 357 LTGGE--DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
GE + V+ + G ++ V F +R S
Sbjct: 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF----KP---SRP-----FRIISG 166
Query: 415 GQDTRLLLWDLEMDEIVVPLR 435
D + +++ +
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFG 187
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 22/143 (15%)
Query: 299 QGSINSIAFSTDGTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356
+G+ + + G + + V + ++ S G Y
Sbjct: 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHS---HQTTVAKTSPSGYYC 74
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRF--G 412
+G V++W + + V +++D S+ R
Sbjct: 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD-------SESK------RIAAV 121
Query: 413 SVGQDTRLLLWDLEMDEIVVPLR 435
G++ ++ + L
Sbjct: 122 GEGRERFGHVFLFDTGTSNGNLT 144
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYI 356
+ IN+I F +G AT D R+FD +Q + + + ++S G+ +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
L G +D VW GH++ VS + DG +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-------TDDGM------AVATGSW 332
Query: 417 DTRLLLWD 424
D+ L +W+
Sbjct: 333 DSFLKIWN 340
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G ++ F D + T D ++D Q + G ++ + + D + ++
Sbjct: 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D ++W + + GH S ++ + F +G F + D
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICF-------FPNGN------AFATGSDDA 248
Query: 419 RLLLWDLEMDEIVVPLR 435
L+DL D+ ++
Sbjct: 249 TCRLFDLRADQELMTYS 265
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 27/167 (16%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
+ + D R+ ++ L + + + W D + +L+
Sbjct: 19 RDARKACADATLSQITN-NIDPVGRIQMRTRRTL----RGHLAKIYAMHWGTDSRLLLSA 73
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
+D + +W V +SWV A+ G G D
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY-------APSGN------YVACGGLDNI 120
Query: 420 LLLWDLEMDEIVVPLRRGPLGG------SPTFSTGSQ--SAHWDNVC 458
+++L+ E V + R L G F +Q ++ D C
Sbjct: 121 CSIYNLKTREGNVRVSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 17/75 (22%), Positives = 27/75 (36%)
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
I S++FS G L D V+D K + + C + DG
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 354 KYILTGGEDDLVQVW 368
+ TG D +++W
Sbjct: 325 MAVATGSWDSFLKIW 339
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 41/200 (20%)
Query: 235 SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294
++W P +G + D + +++ + A VI + F+ H
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDIN---ATPKEHRVIDAKNIFT-GH----------- 230
Query: 295 WHICQGSINSIAFS-TDGTYLATVGRDGYLRVFDY-----SKEQLICGGKSYYGALLCCA 348
+ +A+ + +V D L ++D SK + + C +
Sbjct: 231 ----TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT--AEVNCLS 284
Query: 349 WSMDGKYIL-TGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406
++ ++IL TG D V +W + + + + E H + V + P+++
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-----PHNETI--- 336
Query: 407 VMYRFGSVGQDTRLLLWDLE 426
S G D RL +WDL
Sbjct: 337 ----LASSGTDRRLHVWDLS 352
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 39/240 (16%), Positives = 68/240 (28%), Gaps = 53/240 (22%)
Query: 233 CTSVTWVPGGDGA---------FVVG-HADG---NLYVYEKS-----KDGAGDSSFPVIK 274
+ W+P ++G H +L + G
Sbjct: 48 SLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKG 107
Query: 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQL 333
+ F + I H +G +N + + AT + VFDY+K
Sbjct: 108 EFGGFGSVCGKIEIEIKI--NH--EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS 163
Query: 334 ICGGKSYYGALLCC----------AWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWG--- 379
L +W+ + Y+L+ +D + +W +
Sbjct: 164 KPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA 223
Query: 380 ----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
GH + V VA W + FGSV D +L++WD + P
Sbjct: 224 KNIFTGHTAVVEDVA----WH-LLHE-------SLFGSVADDQKLMIWDTRNNNTSKPSH 271
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 294 RWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSK---EQLICGGKSYYGALL---- 345
H + I + +S T LA+ G D L V+D SK EQ + LL
Sbjct: 318 ESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 346 -------CCAWSMDGKYIL-TGGEDDLVQVWSMED 372
+W+ + +I+ + ED+++QVW M +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 5e-15
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I SIA+S DG YLA+ DG + +FD + +L+ + + + +S D + ++T
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
+D ++++ ++ + GH SWV VAF D T F S D
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF-------CPDDT------HFVSSSSDK 270
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +WD+ V
Sbjct: 271 SVKVWDVGTRTCVHTFF 287
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I S+ FS D L T DGY++++D L + +L A+ D + ++
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
D V+VW + R V H V GV + N +G+ + SVG D
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY-------NGNGS------KIVSVGDDQ 312
Query: 419 RLLLWDLE 426
+ ++D
Sbjct: 313 EIHIYDCP 320
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
Q + S+ S A+ D ++R++D + I + A+S D +Y+ T
Sbjct: 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G V ++ +E K + ++ +A+ + DG S D
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY-------SPDGK------YLASGAIDG 186
Query: 419 RLLLWDLEMDEIVVPLR 435
+ ++D+ +++ L
Sbjct: 187 IINIFDIATGKLLHTLE 203
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 4e-12
Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 19/143 (13%)
Query: 299 QGSINSIAFST----DGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMD 352
+I S+A+ T + + T D ++V+ + E+L + + ++ S
Sbjct: 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT 91
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ D +++W +E+ K + + +AF + D
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF-------SPDSQ------YLA 138
Query: 413 SVGQDTRLLLWDLEMDEIVVPLR 435
+ ++ ++ +E + L
Sbjct: 139 TGTHVGKVNIFGVESGKKEYSLD 161
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 313 YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK----YILTGGEDDLVQVW 368
+ R+ L +++ A+ AW + K ++TG DDLV+VW
Sbjct: 4 HHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW 63
Query: 369 SMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
D ++ EGH V V + S D + LWDLE
Sbjct: 64 KWRDERLDLQWSLEGHQLGVVSVDI-------SHTLP------IAASSSLDAHIRLWDLE 110
Query: 427 MDEIVVPLR 435
+ + +
Sbjct: 111 NGKQIKSID 119
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYI 356
+ +NS+ + G A+ D R++D ++ + +S +S+ G+ +
Sbjct: 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
G D + VW + V+ GH + VS +
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 19/143 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + + D + + +DG + V+D ++ CA++ G I
Sbjct: 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIAC 123
Query: 359 GGEDDLVQVWSMEDRKVVAWG------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
GG D+ V+ + K H +++S +F + +
Sbjct: 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-------TNSDM------QIL 170
Query: 413 SVGQDTRLLLWDLEMDEIVVPLR 435
+ D LWD+E +++
Sbjct: 171 TASGDGTCALWDVESGQLLQSFH 193
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 15/139 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS--MDGKYI 356
+++ +F+ + T DG ++D QL+ + +LC + G
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
++GG D VW M + V E H S V+ V + G F S
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY-------YPSGD------AFASGSD 260
Query: 417 DTRLLLWDLEMDEIVVPLR 435
D L+DL D V
Sbjct: 261 DATCRLYDLRADREVAIYS 279
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
+S+ FS G L D + V+D K + + + S DG
Sbjct: 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340
Query: 356 ILTGGEDDLVQVWS 369
+G D ++VW+
Sbjct: 341 FCSGSWDHTLRVWA 354
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 22/138 (15%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---------GALLCCAWSM 351
S+ S A S G + + + ++ G +LC W
Sbjct: 15 SLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCK 74
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D + I++ +D V VW +WV A+ G
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY-------APSGC------AI 121
Query: 412 GSVGQDTRLLLWDLEMDE 429
G D + ++ L D+
Sbjct: 122 ACGGLDNKCSVYPLTFDK 139
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 8/150 (5%), Positives = 22/150 (14%), Gaps = 19/150 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I +I D + + +
Sbjct: 66 ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRL 125
Query: 359 GGEDDLVQVWSMEDRKVVAWG-------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D + + ++ +
Sbjct: 126 LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGI-------PANNK-----GKQ 173
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441
L L+M ++P + +
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 7/141 (4%), Positives = 23/141 (16%), Gaps = 25/141 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-------GALLCCAWSM 351
+ T + + KE + + +
Sbjct: 108 TPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Query: 352 DGKY-ILTGGEDDLVQVWSMEDRKVVA-----WGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ K G L+ ++ R + +
Sbjct: 168 NNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAK------EQEE-- 219
Query: 406 TVMYRFGSVGQDTRLLLWDLE 426
++ + +
Sbjct: 220 ----EEAALVAPDYGAVAEYA 236
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 3/128 (2%), Positives = 16/128 (12%), Gaps = 14/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++ + + + ++ D
Sbjct: 25 ADVHLGTKNCDFQMERYV-YKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSA 83
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
+ + A H + + +
Sbjct: 84 RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL-------QTSFS------EPRLLILTD 130
Query: 419 RLLLWDLE 426
Sbjct: 131 PRTDHQPI 138
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 19/140 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------------GALLC 346
+ S+ S+ F+ DG + + D +++++ K+ +L
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406
A + + +YIL+G +D V W + + +GH + V VA + S +
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV-ANGSSLGPEYN--- 371
Query: 407 VMYRFGSVGQDTRLLLWDLE 426
F + D + +W +
Sbjct: 372 ---VFATGSGDCKARIWKYK 388
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I S+ FS DG +LAT D +R++D +++ + + + + G +++
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D V++W + + V+ VA S DG + D
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAV-S-----PGDGK------YIAAGSLDR 229
Query: 419 RLLLWDLE 426
+ +WD E
Sbjct: 230 AVRVWDSE 237
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWS-MDGKY 355
+ I S+ + G L + D +R++D + L + + A S DGKY
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKY 221
Query: 356 ILTGGEDDLVQVWSMEDRKVVA-------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
I G D V+VW E +V G GH V V F DG
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-------TRDGQ----- 269
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440
S D + LW+L+ + G
Sbjct: 270 -SVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 13/149 (8%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL-------CCAWSM 351
I D + + + L L C +S
Sbjct: 15 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 74
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-- 409
DG+Y+ TG + QV+ + D +VA ++ + S P+SD +V +
Sbjct: 75 DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133
Query: 410 ---RFGSVGQDTRLLLWDLEMDEIVVPLR 435
+ +D + +WD+E +IV+ L+
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQ 162
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 10/82 (12%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM------D 352
+ + S+A + + Y+ + +D + +D + + + +++ A + +
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 369
Query: 353 GKYILTGGEDDLVQVWSMEDRK 374
TG D ++W +
Sbjct: 370 YNVFATGSGDCKARIWKYKKIA 391
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 21/144 (14%), Positives = 55/144 (38%), Gaps = 7/144 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+++S++ +G ++ + RD +++++ + + + + DG I +
Sbjct: 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-- 416
D V+VW + ++ A H V +++ S + + + G G
Sbjct: 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311
Query: 417 -----DTRLLLWDLEMDEIVVPLR 435
D + +WD+ ++ L
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLV 335
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + + F + + + D ++V+DY K + ++ ++ GK + +
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
D +++W + + + GH+ VS V+ +G S +D
Sbjct: 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-------MPNGD------HIVSASRDK 214
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +W+++ V
Sbjct: 215 TIKMWEVQTGYCVKTFT 231
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360
+ G +L + RD ++++D S + + + + GK+IL+
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357
Query: 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRL 420
+D ++VW ++++ + H +V+ + F + + D +
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-------HKTAP------YVVTGSVDQTV 404
Query: 421 LLWDL 425
+W+
Sbjct: 405 KVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 33/157 (21%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS-------- 350
+ + + + DGT +A+ D +RV+ + ++ + + + C +W+
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 351 ------------MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQP 398
G ++L+G D +++W + + GH++WV GV F
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF------- 346
Query: 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
+S G S D L +WD + + L
Sbjct: 347 HSGGK------FILSCADDKTLRVWDYKNKRCMKTLN 377
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + F + G ++ + D LRV+DY ++ + ++ + + Y++T
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 359 GGEDDLVQVW 368
G D V+VW
Sbjct: 398 GSVDQTVKVW 407
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 6e-14
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG------ALLCCAWSMD 352
++ + FS +G Y+ D L+++DYSK + + K+Y G +
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFSVTG 248
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
GK+I++G ED+LV +W+++ +++V +GH V A + +
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC-------HPTEN--IIAS--A 297
Query: 413 SVGQDTRLLLWDLE 426
++ D + LW +
Sbjct: 298 ALENDKTIKLWKSD 311
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 1e-13
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKY 355
++++ F+ DG+ + + DG R++D + Q + + + +S +GKY
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKY 206
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
IL D+ +++W K + GH + + + + G S
Sbjct: 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA----NFSVTGGK------WIVSGS 256
Query: 416 QDTRLLLWDLEMDEIVVPLR 435
+D + +W+L+ EIV L+
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQ 276
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-13
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ I+ +A+S+D L + D L+++D S + + K + + CC ++ I++
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D+ V++W ++ K + H+ VS V F N DG+ S D
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF-------NRDGS------LIVSSSYDG 171
Query: 419 RLLLWDLE 426
+WD
Sbjct: 172 LCRIWDTA 179
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 8e-13
Identities = 24/137 (17%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+++S+ FS +G +LA+ D ++++ + + + AWS D +++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
+D +++W + K + +GH+++V F N S D
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF-------NPQSN------LIVSGSFDE 129
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +WD++ + + L
Sbjct: 130 SVRIWDVKTGKCLKTLP 146
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 9e-14
Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Query: 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 345
Y + + + + + F ++ D +RVF+Y+ + + +++ +
Sbjct: 42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404
A Y+L+G +D V++W+ E + + EGH +V VAF+ D +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP------KDPS- 154
Query: 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437
F S D + +W L L G
Sbjct: 155 -----TFASGCLDRTVKVWSLGQSTPNFTLTTG 182
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-13
Identities = 13/92 (14%), Positives = 36/92 (39%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
+ I F ++ T G + +++Y + + + + + +I+ G
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG 73
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+D ++V++ + V E H ++ +A
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 37/212 (17%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSM--DGK 354
+ + +AF+ D + A+ D ++V+ + + + D
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
Y++T +D +++W + + VA EGH S VS F + S
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-------HPTLP------IIISG 246
Query: 415 GQDTRLLLWDLEMDEIVVPLRRG----------PLGGSPTFSTGSQSAH--WDNVCPVGT 462
+D L +W+ ++ L G P G ++G + +G
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS----LGN 302
Query: 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494
+P S+ V K + + IFT
Sbjct: 303 DEPTLSLDPVGK----LVWSGGKNAAASDIFT 330
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 24/129 (18%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357
S+A S +G ++ VG +Y + +G W D
Sbjct: 355 VDVFPQSLAHSPNGRFVTVVGDG------EYVIYTALAWRNKAFGKCQDFVWGPDSNSYA 408
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
E ++ + V S + S V D
Sbjct: 409 LID----------ETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALL--------GVKSD 450
Query: 418 TRLLLWDLE 426
+ +D +
Sbjct: 451 GFVYFFDWD 459
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 21/139 (15%)
Query: 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 345
Y +A + G + D A + G ++ + KE S+ +
Sbjct: 379 YVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEV-----TSWSVPMH 433
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ +L D V + ++ +V + + V WS +G E
Sbjct: 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDV-------IWS---DNG--E 481
Query: 406 TVMYRFGSVGQDTRLLLWD 424
VM V ++
Sbjct: 482 LVM----IVNTNSNGDEAS 496
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 14/131 (10%), Positives = 42/131 (32%), Gaps = 12/131 (9%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
GS S++ + L ++ D + + S YI G
Sbjct: 449 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR--AKPSYISISPSETYIAAG 506
Query: 360 GEDDLVQVWSMEDRKVVAWG-EGHNSWVSGVAF---DSYWSQPNSDGTAETVMYRFGSVG 415
+ ++ ++ R+V S ++ +++ + ++ + +
Sbjct: 507 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED------LVATGS 560
Query: 416 QDTRLLLWDLE 426
DT + ++ ++
Sbjct: 561 LDTNIFIYSVK 571
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 46/238 (19%)
Query: 234 TSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292
T+V + P ++ G G + V+ D + N
Sbjct: 68 TTVKFSPIKGSQYLCSGDESGKVIVW----GWTFD--------------KESNSVEVNVK 109
Query: 293 ARWHICQGSINSIAFSTDGTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350
+ + + G I+ I++ +G L V GRD + + + + + C
Sbjct: 110 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 169
Query: 351 MDGKY-ILTGGEDDLVQVWSMEDRKVVAW---GEGHNSWVSGVAFDSYWSQPNSDGTAET 406
+T G+D V + K A S+V V F S P+S G
Sbjct: 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-S----PDS-GE--- 220
Query: 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG------SPTFSTGSQ--SAHWDN 456
+VG D ++ +D + E + + + ++ + + D
Sbjct: 221 ---FVITVGSDRKISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADA 274
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 26/142 (18%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAWS------- 350
+ + I+ S TY+A G + ++D ++ ++ + +W
Sbjct: 488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 547
Query: 351 ---MDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406
++ + TG D + ++S++ K++ H V+ + ++ + T
Sbjct: 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-------TPST--- 597
Query: 407 VMYRFGSVGQDTRLLLWDLEMD 428
S G D + W++ ++
Sbjct: 598 ----LVSSGADACIKRWNVVLE 615
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 299 QGSINSIAFSTDGTYL-ATVGRDGYLRVFD---YSKEQLICGGKSYYGALLCCAWSMD-G 353
IN+ TVG DG + + + + +S D G
Sbjct: 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 219
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
++++T G D + + + + + + E V G F + D +F +
Sbjct: 220 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF----ALSWLDSQ------KFAT 269
Query: 414 VGQDTRLLLWDLE 426
VG D + +WD+
Sbjct: 270 VGADATIRVWDVT 282
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 55/168 (32%)
Query: 299 QGSINSIAFS---TDGTYLATVGRDGYLRVFDYSKEQLI----CGGKSYYGALLCCAWSM 351
Q + F+ D ATVG D +RV+D + + + + + +
Sbjct: 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT- 307
Query: 352 DGKYILTGGEDDLVQVWSME----------------------------DRKVVAW----- 378
I++ D + + + D +++ W
Sbjct: 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM 367
Query: 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+ H++ + + S + S+ D L + +
Sbjct: 368 HQDHSNLIVSLDN--------SKAQ------EYSSISWDDTLKVNGIT 401
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 23/129 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I S+ S +++ D L+V +K + +G+ A + + +
Sbjct: 372 SNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAV 422
Query: 359 GGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
DD + + ++ ++ +
Sbjct: 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN-------YVAV------GLEEGNTI 469
Query: 418 TRLLLWDLE 426
L DLE
Sbjct: 470 QVFKLSDLE 478
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 27/143 (18%)
Query: 299 QGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYG----ALLCCAWS--M 351
+ +++ +A G+ ++R D ++ + G + +S
Sbjct: 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIK 76
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGE--------GHNSWVSGVAFDSYWSQPNSDGT 403
+Y+ +G E V VW K E +S +++D +G
Sbjct: 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-------FEGR 129
Query: 404 AETVMYRFGSVGQDTRLLLWDLE 426
G+D + +
Sbjct: 130 ----RLCVVGEGRDNFGVFISWD 148
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 17/130 (13%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYI 356
+ + DG D L + +I + + G+ + + + +
Sbjct: 405 FGSQPKVASANNDGFTAVLTNDDD-LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 463
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
G + ++ +E + + S ++ + T +
Sbjct: 464 EEGNTIQVFKLSDLEVSFDL--KTPLRAKPSYISI-------SPSET------YIAAGDV 508
Query: 417 DTRLLLWDLE 426
++LL+DL+
Sbjct: 509 MGKILLYDLQ 518
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 18/176 (10%), Positives = 46/176 (26%), Gaps = 18/176 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-----CGGKSYYGALLCCAWSMDG 353
G+++SI + L G + ++D LI +C + +
Sbjct: 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS 273
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF-----DSYWSQPNSDGTAETVM 408
++ G + +W+ + S F + +
Sbjct: 274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333
Query: 409 YRFG-------SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457
+ + ++++ L + P S F +A+ +
Sbjct: 334 TISVSNDKILLTDEATSSIVMFSLNELSSSKAV-ISPSRFSDVFIPTQVTANLTML 388
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 27/206 (13%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293
T +T +P D AF V DG + V + +++ + + +
Sbjct: 115 TQITMIPNFD-AFAVSSKDGQIIVL----------KVNHYQQESEVKFLNCECIRKINLK 163
Query: 294 RWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWS 350
+ + ++ AF + + L + + +FD + + +GA+
Sbjct: 164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID 223
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
+ ++ G ++ +W + ++ +W G ++ ++ V + NS
Sbjct: 224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF-YGKNSVIVV----- 277
Query: 410 RFGSVGQDTRLLLWDLEMDEIVVPLR 435
T L +W+
Sbjct: 278 ---GGSSKTFLTIWNFVKGHCQYAFI 300
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 34/168 (20%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-----GALLCCAWSMD 352
SI S A S + YL T G +++++ + + S + +
Sbjct: 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN 122
Query: 353 GKYILTGGEDDLVQVWSMEDRK----------------VVAWGEGHNSWVSGVAFDSYWS 396
+D + V + + + + V AF
Sbjct: 123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAF----- 177
Query: 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444
++ + V ++ +R++++D+ E + + P G+ +
Sbjct: 178 --VNEEKSLLV-----ALTNLSRVIIFDIRTLERLQIIENSPRHGAVS 218
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 18/189 (9%), Positives = 47/189 (24%), Gaps = 41/189 (21%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFD----------------YSKEQLICGGKS 339
+ C ++ I + A +DG + V ++ +
Sbjct: 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167
Query: 340 YYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWS 396
A+ A+ + K +L V ++ + + + + VS + D
Sbjct: 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID---- 223
Query: 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP------LGGSPTFSTGSQ 450
+ + +WD+ + ++ G + + S
Sbjct: 224 ---EECC------VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV 274
Query: 451 ---SAHWDN 456
Sbjct: 275 IVVGGSSKT 283
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYL-RVFDYSKEQLICG--GKSYYGALLCCAWSMDGKY 355
I + + +AT +DG + RVF L+ ++ WS DG
Sbjct: 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK 254
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS--QPNSDGTAETVMYRFGS 413
+ + + V+ + + + W++ F S WS +
Sbjct: 255 LAVVSDKWTLHVFEIFNDQDNKR-HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313
Query: 414 VGQDTRLLLWDLE 426
+ + + +++W
Sbjct: 314 ISESSLVVVWPHT 326
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--------------GGKS 339
R + + + + +STDG+ LA V L VF+ +Q S
Sbjct: 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294
Query: 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNSW 385
L + G I E LV VW V + + W
Sbjct: 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERW 343
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 15/225 (6%)
Query: 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 349
NPI + + F+ D + L + +++ I + + + +
Sbjct: 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKSF-EIYNVHPVAHIMSQEMRHLSKVRMLH 68
Query: 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+ G ++V +W ++ V ++ V + + + +
Sbjct: 69 RTNY-VAFVTGVKEVVHIWDDVKKQDV--SRIKVDAPVKDLFLSREFIVVSYGDV--ISV 123
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468
++F + + D V G L S F+ Q
Sbjct: 124 FKF----GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL-GQIHITKLQSSGSATTQDQG 178
Query: 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQESVL--TVCREGH-IKIW 510
++ L V + HT P+ + ++S + T ++G I+++
Sbjct: 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 25/157 (15%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSMDGKY 355
+I + F+ + L G + D+S Q+ S+ C S+ +
Sbjct: 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
+ TG + + ++ ++ + H + V+ F N + +
Sbjct: 178 LATGDSTGRLLLLGLDGHEIFKE-KLHKAKVTHAEF-------NPRCD-----WLMATSS 224
Query: 416 QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA 452
D + LWD LR S +
Sbjct: 225 VDATVKLWD---------LRNIKDKNSYIAEMPHEKP 252
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 21/166 (12%), Positives = 50/166 (30%), Gaps = 19/166 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL- 357
+ S LAT G L + ++ K + + ++ +++
Sbjct: 163 DYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIF-KEKLHKAKVTHAEFNPRCDWLMA 221
Query: 358 TGGEDDLVQVW---SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
T D V++W +++D+ H V+ F+ +D T + +
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP------TDST------KLLTT 269
Query: 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460
Q + ++ + P + A W + +
Sbjct: 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP--IKATWHPMYDL 313
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 32/146 (21%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICG------GKSYYGALLCCAWSM 351
+ +N+ F+ TD T L T + +RV+ + + + W
Sbjct: 250 EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309
Query: 352 DGKYILTGGEDDL---------VQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWSQPNS 400
I+ G D + ++ +V +S F +
Sbjct: 310 MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF-------SP 362
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDLE 426
G S G +L+W+ E
Sbjct: 363 TGD------VLAS-GMGFNILIWNRE 381
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 17/134 (12%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVF--DYSKEQLICGGKSYYGALLCCAWSMDG-K 354
++ I S+ G + R F +L + + W
Sbjct: 28 QTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPT 87
Query: 355 YILTGGEDDLVQVW--SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ G + + +W ++++ G G ++G+ F+ + +
Sbjct: 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQ------FNTN------QLF 135
Query: 413 SVGQDTRLLLWDLE 426
L D
Sbjct: 136 VSSIRGATTLRDFS 149
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMDGKY 355
GSI + F+ + +G R+ D+ L + S +
Sbjct: 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
++TG V + +M+ +++ H V+ VA N +
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNL-RMHKKKVTHVAL-------NPCCDWFLA-----TAS 270
Query: 416 QDTRLLLWDLE 426
D + +WDL
Sbjct: 271 VDQTVKIWDLR 281
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 24/167 (14%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMD 352
S+ S + T G + + + ++L + + A +
Sbjct: 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPC 261
Query: 353 GKYIL-TGGEDDLVQVWSMEDRKVVA---WGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+ L T D V++W + + A + H V+ F + DG
Sbjct: 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF-------SPDGA----- 309
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455
R + Q + + ++ + + L P + + H
Sbjct: 310 -RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR 355
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 11/134 (8%), Positives = 42/134 (31%), Gaps = 19/134 (14%)
Query: 299 QGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICG--GKSYYGALLCCAWS-MDGK 354
S+A+ +A + G + ++++ + G G++ ++ ++
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN 178
Query: 355 YILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ ++ + +V A + N W + ++
Sbjct: 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV-------SASSR------MVV 225
Query: 413 SVGQDTRLLLWDLE 426
+ ++L +++
Sbjct: 226 TGDNVGNVILLNMD 239
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 34/148 (22%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-----------------GKSYY 341
+ +N+ FS DG L T + +RV+ S+ G
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR 355
Query: 342 GALLCCAWSMDGKYILTGGEDD-LVQVWSMEDRKVVA-WGEGHNSWVSGV-AFDSYWSQP 398
L+ D + + + V+ K++ + +S +S + F
Sbjct: 356 YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF------- 408
Query: 399 NSDGTAETVMYRFGSVGQDTRLLLWDLE 426
N G S +L+W +
Sbjct: 409 NPMGD------TLAS-AMGYHILIWSQQ 429
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 21/132 (15%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------GALLCCAWSMDG-KYI 356
SI + L + S + + AW +
Sbjct: 76 SIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTV 135
Query: 357 LTGGEDDLVQVWSME--DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
G + + +W+ D+ G G ++G+ F+ + +F +
Sbjct: 136 AVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP------LNTN------QFYAS 183
Query: 415 GQDTRLLLWDLE 426
+ L D +
Sbjct: 184 SMEGTTRLQDFK 195
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 19/155 (12%), Positives = 41/155 (26%), Gaps = 19/155 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
G + + ++ D + T G D V+ A C W+ + K
Sbjct: 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 111
Query: 357 LTGGEDDLVQVWSMEDRKVVAWG----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
G ++ + E + S V + + + +
Sbjct: 112 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW-------HPNSV------LLA 158
Query: 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447
+ D + ++ + E+ P G F
Sbjct: 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQL------ICGGKSYYGALL------ 345
+ ++ S+ + + LA D R+F Y KE G K +G L+
Sbjct: 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201
Query: 346 -----CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+S +G + D V + + + VA + V F
Sbjct: 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 49/168 (29%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G ++ + FS +G+ +A V D + + D K+ + S LL + + +
Sbjct: 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261
Query: 359 GGEDDLV-------------------------------QVWSMEDRKVVAWGE------- 380
G + V + + D+K + G
Sbjct: 262 GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321
Query: 381 --GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
H + VS ++ S G + +F + G D + +WD+
Sbjct: 322 DSLHKNSVSQISV-------LSGG--KAKCSQFCTTGMDGGMSIWDVR 360
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 17/140 (12%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYILT 358
I+ A++ D T +A + + +++ S + + K + G + W+ D I+T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 359 GGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
G D VW+++ R N V + + +F
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW-------APNEK------KFAVGSG 116
Query: 417 DTRLLLWDLEMDEIVVPLRR 436
+ + E + +
Sbjct: 117 SRVISICYFEQENDWWVCKH 136
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKYI 356
+A++ GT LA+ G D +R++ + IC G + AWS G Y+
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 357 LTGGEDDLVQVWSME--DRKVVAWGEGHNSWVSGVAF 391
+ D +W D + V EGH + V VA+
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW 113
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
Q ++ +A+S G YLA+ D ++ +++ C + + + AW+ G +
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 357 LTGGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAF 391
T D V VW +++ H V V +
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 37/162 (22%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE---------------QLICGGKSYY-G 342
+ ++ S+AF G LA+ D +R++ + IC ++
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG---------EGHNSWVSGVAFDS 393
+ AW + T DD ++V+ + + H+ V+ VA+ +
Sbjct: 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW-N 312
Query: 394 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
P + S D + W + E +
Sbjct: 313 ----PK-EPG------LLASCSDDGEVAFWKYQRPEGLHHHH 343
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 15/160 (9%), Positives = 47/160 (29%), Gaps = 31/160 (19%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
+ + + LA+ D ++++ ++ +C + + + A+ G+ +
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 357 LTGGEDDLVQVW---------------SMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNS 400
+ +D V++W S K + G H+ + +A+
Sbjct: 210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-------CQ 262
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440
+ D + ++ + +
Sbjct: 263 LTG------ALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL---------CCAW 349
+I IA+ LAT D +RVF A L C AW
Sbjct: 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311
Query: 350 S-MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 382
+ + + + +D V W + + + H
Sbjct: 312 NPKEPGLLASCSDDGEVAFWKYQRPEGLHHHHHH 345
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 5e-13
Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 15/130 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
I S DG L G L ++D + S A A S D K
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
+ D + VW + ++ +V +GH S + ++DGT + + G
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI-------SNDGT------KLWTGGL 203
Query: 417 DTRLLLWDLE 426
D + WDL
Sbjct: 204 DNTVRSWDLR 213
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 2e-12
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++A S D + DG + V+D + L+ + + C S DG + T
Sbjct: 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GG D+ V+ W + + + + S + + + G + +
Sbjct: 201 GGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGY-------CPTGE------WLAVGMESS 246
Query: 419 RLLLWDLE 426
+ + +
Sbjct: 247 NVEVLHVN 254
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 8e-12
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 21/144 (14%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-----GALLCCAWSMDG 353
+ ++ S ++ T G G ++V+D S + C DG
Sbjct: 51 GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 354 KYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
++ GGE + +W + ++ A +A + D
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI-------SPDSK------VC 156
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLR 435
S D + +WDL +V +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQ 180
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 17/128 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-CGGKSYYGALLCCAWSMDGKYIL 357
I S+ + G +LA + V +K +L ++ GK+ +
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWFV 281
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
+ G+D+L+ W + +S V + D + D
Sbjct: 282 STGKDNLLNAWRTPYGASIF-QSKESSSVLSCDI-------SVDDK------YIVTGSGD 327
Query: 418 TRLLLWDL 425
+ ++++
Sbjct: 328 KKATVYEV 335
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 21/133 (15%)
Query: 300 GSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
S + DG D + + I ++ + S +++ T
Sbjct: 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYT 68
Query: 359 GGEDDLVQVWSMEDRKVVA-----WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
GG V+VW + + ++++ DG
Sbjct: 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-------LPDGC------TLIV 114
Query: 414 VGQDTRLLLWDLE 426
G+ + L +WDL
Sbjct: 115 GGEASTLSIWDLA 127
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 22/153 (14%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD--YSKEQLICGGKSYYGALLCCAWSMDGKYI 356
++ + GT A D L ++ + + WS + K I
Sbjct: 23 DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKII 82
Query: 357 LTGGEDDLVQVWSMED----RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
++ ++++S + +A H+S V V F++
Sbjct: 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK------QDN------VLA 130
Query: 413 SVGQDTRLLLWDL----EMDEIVVPLRRGPLGG 441
S G + + +WD+ E PL G
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 20/156 (12%), Positives = 48/156 (30%), Gaps = 26/156 (16%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWS- 350
N + +S + +A +G L ++ ++ + ++ ++ ++
Sbjct: 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA 123
Query: 351 MDGKYILTGGEDDLVQVWSMEDRK---------VVAWGEGHNSWVSGVAFDSYWSQPNSD 401
+ +GG + + +W M V +A+ N
Sbjct: 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW-------NQS 176
Query: 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437
+ F S G +WDL+ + V+ L
Sbjct: 177 LA-----HVFASAGSSNFASIWDLKAKKEVIHLSYT 207
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 21/202 (10%), Positives = 58/202 (28%), Gaps = 31/202 (15%)
Query: 299 QGSINSIAFSTDGTYLATVG----RDGYLRVFDYSKEQLICG--GKSYYGALLCCAWS-M 351
+ ++ + + + D + ++D + + +L W
Sbjct: 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ 273
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
D +L+ G D+ V +W+ E + ++ +W F + F
Sbjct: 274 DEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF-------APEAPD-----LF 321
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471
D ++ + L+ + +++ ++ ++
Sbjct: 322 ACASFDNKIEVQTLQN------------LTNTLDEQETETKQQESETDFWNNVSREESKE 369
Query: 472 VPKLSPLVAHRVHTEPLSGLIF 493
P + L A + EP +
Sbjct: 370 KPSVFHLQAPTWYGEPSPAAHW 391
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGK--Y 355
+ S+AFS+D + + RD +++++ +S+ + C +S +
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
I++ G D LV+VW++ + K+ GH +++ V + DG+ S G
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV-------SPDGS------LCASGG 234
Query: 416 QDTRLLLWDLEMDEIVVPLR 435
+D + +LWDL + + L
Sbjct: 235 KDGQAMLWDLNEGKHLYTLD 254
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 8e-12
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 12/138 (8%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
++ + S+DG + + DG LR++D + + +L A+S D + I++
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 359 GGEDDLVQVWSME-DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
G D +++W+ K E H+ WVS V F + + + ++ S G D
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-------SPNSSNPIIV----SCGWD 194
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W+L ++
Sbjct: 195 KLVKVWNLANCKLKTNHI 212
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 299 QGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICG--GKSYYG---ALLCCAWSMD 352
G + IA + + + RD + ++ ++++ G ++ G + S D
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
G++ L+G D +++W + GH V VAF
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 299 QGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356
++ + FS + + + + G D ++V++ + +L + G L S DG
Sbjct: 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSV 414
+GG+D +W + + K + +G + ++ + F + YW + +
Sbjct: 231 ASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPS----------- 278
Query: 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGS 442
+ +WDLE IV L++ + S
Sbjct: 279 -----IKIWDLEGKIIVDELKQEVISTS 301
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---------GGKSYYGALLCCAWS 350
IN++ FS + +L ++++D + ++ K+ AWS
Sbjct: 257 DIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315
Query: 351 MDGKYILTGGEDDLVQVWSME 371
DG+ + G D+LV+VW +
Sbjct: 316 ADGQTLFAGYTDNLVRVWQVT 336
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 4/98 (4%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---GALLCCAWSMD-GKYI 356
I+ I + L DG L V+ + + LLCC + + I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
G + + + + + Y
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY 110
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 35/296 (11%), Positives = 71/296 (23%), Gaps = 43/296 (14%)
Query: 91 AKLLGTGNGSRTLGFGGGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVG 150
+ ++S +DG + +
Sbjct: 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS--------WDG--LIEVIDPR 130
Query: 151 DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210
+ + + + D + L++G+N+ V L
Sbjct: 131 NYGDGVIAVKNL-----NSNNTKVKNKIFTMDTN---SSRLIVGMNNSQVQWFRLPLCED 182
Query: 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 270
D G Y V +P + DG + V D
Sbjct: 183 DNGTIEESGLKYQ---------IRDVALLPKEQEGYACSSIDGRVAVEF------FDDQG 227
Query: 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330
+F+ R + + +NSI FS +L T G DG + ++
Sbjct: 228 DDYNSSKRFAFRCHRLNLKD-----TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Query: 331 EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386
+ I + + + + DD + + E + S +
Sbjct: 283 RKKIK-NFAKFNEDSVVKIACSDNILCLATSDD----TFKTNAAIDQTIELNASSI 333
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
+G ++V D + +++ + + G+ +++
Sbjct: 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS 157
Query: 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419
+D +++WS++D GH + V+ +A G S D
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI-------IDRGR------NVLSASLDGT 204
Query: 420 LLLWDLE 426
+ LW+
Sbjct: 205 IRLWECG 211
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSM-D 352
I N++ F T G Y+ G + V + +SKEQ I + + +
Sbjct: 243 HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
YI G E+ ++ W + + + ++ V F + G
Sbjct: 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF--------AAGA------L 348
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLR 435
F S G DT + L + E P
Sbjct: 349 FVSSGFDTSIKLDIISDPESERPAI 373
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 13/135 (9%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKY 355
S NS+ + Y+ +G L +D + G + + ++ G
Sbjct: 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGAL 348
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD----SYWSQPNSDGTAETVMYRF 411
++ G D +++ + D + + V+ D + + + E +
Sbjct: 349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL---- 404
Query: 412 GSVGQDTRLLLWDLE 426
VG++ L++L
Sbjct: 405 -EVGKNNFCALYNLS 418
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 11/150 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I + F G L + +D L+++ + + A G+ +L+
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS----QPNSDGTAETVMYRFGSV 414
D +++W + + GV + + Q + T++ FG+
Sbjct: 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258
Query: 415 GQ-------DTRLLLWDLEMDEIVVPLRRG 437
G+ + + ++ E + L
Sbjct: 259 GKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 11/144 (7%), Positives = 30/144 (20%), Gaps = 23/144 (15%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL---------ICGGKSYYGALLCCAWSM 351
+I D + + + + L + G A +
Sbjct: 7 TITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEK 66
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
G ++ D +++ R + + RF
Sbjct: 67 VGSHLYKARLDGHDFLFNTIIRDGSKM-LKRADYTAVDTA-------KLQMR------RF 112
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLR 435
+ + + D + +
Sbjct: 113 ILGTTEGDIKVLDSNFNLQREIDQ 136
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 15/153 (9%), Positives = 48/153 (31%), Gaps = 20/153 (13%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG---------GKSYYGALLCCA 348
I + + T RDG ++V+D ++ + + A
Sbjct: 116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
++ + + + G ++ ++++ + + + W + V + FD + M
Sbjct: 176 YNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFD-------RKDIS---M 224
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441
+ + + + ++D+
Sbjct: 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 22/159 (13%)
Query: 296 HICQG---SINSIAFSTDGTYLATVG----RDGYLRVFDYSKEQLIC----GGKSYYGAL 344
HI +G ++ + T+G G +++++ L
Sbjct: 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG 71
Query: 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNSWVSGVAFDSYWSQPNS-DG 402
A S+ +Y+ TG + +W++E ++ + +GH ++ + D
Sbjct: 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAI--DGIGGLGIGEGA 129
Query: 403 TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441
+ +D + +WD + V P+ G
Sbjct: 130 P------EIVTGSRDGTVKVWDPRQKDDPVANME-PVQG 161
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 18/143 (12%), Positives = 36/143 (25%), Gaps = 21/143 (14%)
Query: 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---K 354
C A++ + + +G +++FD L + + +
Sbjct: 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMN 225
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWG-----EGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
++ + V+ M + + H S V V
Sbjct: 226 KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH-------LPQNR-----E 273
Query: 410 RFGSVGQDTRLLLWDLEMDEIVV 432
F + G L LW E
Sbjct: 274 LFLTAGGAGGLHLWKYEYPIQRS 296
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 16/156 (10%), Positives = 36/156 (23%), Gaps = 40/156 (25%)
Query: 299 QGSINSIAFSTDGT---YLATVGRDGYLRVFDYSKEQLICGG-----KSYYGALLCCAWS 350
+ + S+ F L +G VFD + G K++ +
Sbjct: 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL 268
Query: 351 MDGKYIL-TGGEDDLVQVWSME---------DRKVVAWG----------EGHNSWVSGVA 390
+ + T G + +W E + +S +
Sbjct: 269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328
Query: 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+ + D D + + +
Sbjct: 329 W-------SPDKR-----GLCVCSSFDQTVRVLIVT 352
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-------GGKSYYGALLCCAWSMDG 353
A S YLAT G L +++ ++ + +
Sbjct: 70 CGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA 129
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWG----EGHNSW-VSGVAFDSYWSQPNSDGTAETVM 408
I+TG D V+VW + +G N VAF + ++ +
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN---QEER----- 181
Query: 409 YRFGSVGQDTRLLLWDLE 426
+ + + L+DL
Sbjct: 182 -VVCAGYDNGDIKLFDLR 198
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGK 354
+IN + F D L +V +D LR+++ + L+ G +L + + G+
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
I++ G D +++W + ++++ + +
Sbjct: 175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 27/156 (17%)
Query: 299 QGSINSIAF---STDGTYLATVG-RDGYLRVFDYSKEQLIC-----GGKSYYGALLCCAW 349
+ + F S +G L + +++ + I CAW
Sbjct: 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 77
Query: 350 SMDG----KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
+ D + G ++++ + + + GH + ++ + F P D
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF-----HP-RDPN-- 129
Query: 406 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441
SV +D L LW+++ D +V G + G
Sbjct: 130 ----LLLSVSKDHALRLWNIQTDTLVAIF--GGVEG 159
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 294 RWHICQGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICG------GKSYYGALL 345
+ Q I + FS D LA + G L V+D E A+
Sbjct: 282 DYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIR 339
Query: 346 CCAWSMDGKYILTGGEDDLVQVW 368
++S D ++ +D + W
Sbjct: 340 QTSFSRDSSILIAVCDDASIWRW 362
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 42/165 (25%)
Query: 287 SKSNPIARWHIC-----QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY 341
S I + ++ + + G + + + + + K +
Sbjct: 214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271
Query: 342 GALLCC--------------AWSMD--GKYILTGGEDDLVQVWSMEDRKVVAW------G 379
+ + +SMD K + G + + VW +E
Sbjct: 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331
Query: 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424
+ + +F + D + +V D + WD
Sbjct: 332 HKCGAAIRQTSF-------SRDSS------ILIAVCDDASIWRWD 363
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 29/152 (19%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA--------------- 343
+ I S+ ++ DGT++ ++ + +++ ++ +
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208
Query: 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403
+ W D K + G + V+ + ++ GH+ +S + F+
Sbjct: 209 GVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-------DTNK 260
Query: 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
S D L +W
Sbjct: 261 ------LLLSASDDGTLRIWHGGNGNSQNCFY 286
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G I+ + F+ L + DG LR++ + +++ +W D K +++
Sbjct: 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VIS 305
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
D V++WS++ ++A + + DG ++ D
Sbjct: 306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI-------SQDGQ------KYAVAFMDG 352
Query: 419 RLLLWDLE 426
++ ++DL+
Sbjct: 353 QVNVYDLK 360
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYIL 357
+ +A+S DG + T +G LR+++ + L + ++ W+ DG +I+
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHII 165
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY---RFGSV 414
+ +++ +W++ V+ E + S + +++ + + +F
Sbjct: 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENH--SGDGSLGVDVEWVDDDKFVIP 223
Query: 415 GQDTRLLLWDLEMDEIVVPLR 435
G + ++ + L
Sbjct: 224 GPKGAIFVYQITEKTPTGKLI 244
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 13/138 (9%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
SI S ++ D + + DG +R++ + L+ + S DG+
Sbjct: 289 SQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347
Query: 359 GGEDDLVQVWSMEDRKVVAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
D V V+ ++ + G+ + + Y+
Sbjct: 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP------LYAS-----YQSSQDNDY 396
Query: 418 TRLLLWDLEMDEIVVPLR 435
L W+ ++I V
Sbjct: 397 IFDLSWNCAGNKISVAYS 414
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSMDGKYIL 357
I + S DG A DG + V+D +L
Sbjct: 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ 389
Query: 358 TGGEDDLVQ--VWSMEDRKVVAWGEGHNSWVSGVA 390
+ ++D + W+ K+ V +
Sbjct: 390 SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE---QLICGGKSYYGALLCCAWSMDG-- 353
+ S+AFS D + + RD +++++ E + GG+ + + C +S +
Sbjct: 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
I++ D V+VW++ + K+ + GH +VS VA + DG+ S
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV-------SPDGS------LCAS 578
Query: 414 VGQDTRLLLWDLEMDEIVVPLR 435
G+D +LLWDL + + L
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSLE 600
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 24/166 (14%)
Query: 299 QGSINSIAFSTDGT--YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI 356
+ ++ + FS + + + D ++V++ S +L + G + A S DG
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSV 414
+GG+D +V +W + + K + E + S + + F + YW ++
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEHG----------- 624
Query: 415 GQDTRLLLWDLEMDEIVVPLR---RGPLGGSPTFSTGSQSAHWDNV 457
+ +WDLE IV L+ + + +
Sbjct: 625 -----IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 299 QGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICG--GKSYYG---ALLCCAWSMD 352
+ +IA D + + RD + ++ +K+ G + G + S D
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD 441
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
G++ L+G D +++W + GH V VAF
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 25/169 (14%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDGKYI 356
+ ++A + LA + + K ++ I +++ A+ +
Sbjct: 297 KPLGAVALKSYEEELAK-DPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQ 355
Query: 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
Q + + H V+ +A N+D S +
Sbjct: 356 TVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIAT----PIDNADIIV--------SASR 403
Query: 417 DTRLLLWDLEMDEIVVPLRRGPLGG------SPTFSTGSQ---SAHWDN 456
D ++LW L D+ + + L G S+ Q S WD
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-------------------CGGKSY 340
I+++ FS + +L + ++++D + ++ K
Sbjct: 603 SVIHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 341 YGALLCCAWSMDGKYILTGGEDDLVQVW 368
WS DG + +G D +++VW
Sbjct: 662 VIYCTSLNWSADGSTLFSGYTDGVIRVW 689
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 21/172 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGG--KSYYGALLCCAWSMDGK 354
+ + +A+S DG YLAT RD + +++ E+ C + + + W
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 355 YILTGGEDDLVQVWSME--DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ + DD V++W D + VA GH V F + ++R
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF-------DKTEG----VFRLC 215
Query: 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS-QSAHWDNVCPVGTL 463
S D+ + +W D+ P + W G +
Sbjct: 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW---GFNGLI 264
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL-------LCCAWSM 351
+ +I S+A+ + LA D + ++ + + AWS
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 352 DGKYILTGGEDDLVQVWSM----EDRKVVAWGEGHNSWVSGVAF 391
DG Y+ T D V +W E+ + ++ + H+ V V +
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 27/143 (18%)
Query: 299 QGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL---------CC 347
+G++ S F L + D +RV+ Y + + A+L
Sbjct: 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG----EGHNSWVSGVAFDSYWSQPNSDGT 403
AW +G I + G D ++ V+ D + + ++ V + +G
Sbjct: 257 AWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE------LNGK 309
Query: 404 AETVMYRFGSVGQDTRLLLWDLE 426
+ G D + W LE
Sbjct: 310 TILA-----TGGDDGIVNFWSLE 327
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDG 353
HI AF++ T T + +++ + + C W+
Sbjct: 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS 67
Query: 354 KYILTGGEDDLVQVWSMEDR---KVVAWGEGHNSWVSGVAF 391
I+T +D V+ K N + V +
Sbjct: 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW 108
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWSM 351
+ G ++++ FS G LA G D + + S + + K L W+
Sbjct: 202 YPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261
Query: 352 DGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404
+ I+ G + + + + S S + +G
Sbjct: 262 ESA-IVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 29/148 (19%)
Query: 299 QGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLI----------CGGKSYYG---A 343
+GS+ S+ F+ G LA +G DG LR++D + + +
Sbjct: 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169
Query: 344 LLCCAWSMD---GKYILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQP 398
C +W + + + + +D K+ GH S + +++ P
Sbjct: 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA-----P 224
Query: 399 NSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+ + + + +D R+ ++ +
Sbjct: 225 SIGRWYQLI----ATGCKDGRIRIFKIT 248
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 21/145 (14%)
Query: 299 QGSINSIAFSTD----GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354
+ I SI+++ +AT +DG +R+F +++ + S D
Sbjct: 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD 273
Query: 355 YILTGGEDD----LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
G D ++ S ++++ + HN V V++ N GT
Sbjct: 274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW-------NLTGT------I 320
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLR 435
S G D ++ LW +
Sbjct: 321 LSSAGDDGKVRLWKATYSNEFKCMS 345
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 29/174 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE----QLICGGKSYYGALLCCAWSMD-- 352
++ + + G ++AT D +++VF K+ +L +++ +++ W+
Sbjct: 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEY 70
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWG---------EGHNSWVSGVAFDSYWSQPNSDGT 403
G+ I + D V++W + + G + V F + P G
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF-A----PAHLGL 125
Query: 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457
+ +G D L L+D LR L + + H +
Sbjct: 126 ------KLACLGNDGILRLYDALEPS---DLRSWTLTSEMKVLSIPPANHLQSD 170
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 7e-11
Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWS------ 350
+ + S+ + + + RD ++V+ + L + G + +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLG---HNDWVSQVRVVPNEKAD 163
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
D I++ G D +V+ W++ ++ A GHNS ++ + + DGT
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA-------SPDGT------L 210
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLR 435
S G+D ++LW+L + + L
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLS 235
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 29/154 (18%)
Query: 299 QGSINSIAFS------TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352
++ + D + + G D ++ ++ ++ Q+ + + S D
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYW--SQPNSDGTAETVM 408
G I + G+D + +W++ +K + V +AF + YW + TA +
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAA-----ATATGIK 261
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442
++ L+ +V LR G S
Sbjct: 262 -------------VFSLDPQYLVDDLRPEFAGYS 282
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 9e-10
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL-----------C 346
G + S+A S L + RD L + + G +G +
Sbjct: 17 NGWVTSLATSAGQPNLLLSASRDKTLISWK------LTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
C + DG Y L+ D +++W + + GH S V V
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI 115
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 16/103 (15%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYI 356
+IN++ S DGT +A+ G+DG + +++ + ++ + + + A+S + ++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWL 252
Query: 357 LTGGEDDLVQVWSMEDRKVVA--------WGEGHNSWVSGVAF 391
++V+S++ + +V + + +A+
Sbjct: 253 AAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--------GGKSYYGALLCCAWS 350
Q + S+AFS + +LA ++VF + L+ K+ + AWS
Sbjct: 237 QDEVFSLAFSPNRYWLAA-ATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 351 MDGKYILTGGEDDLVQVWSME 371
DG+ + G D++++VW +
Sbjct: 296 ADGQTLFAGYTDNVIRVWQVM 316
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 7e-11
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 17/134 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWS--MDGK 354
I+ G +AT D +++F+ E + G + W+ G
Sbjct: 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 68
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ + D V +W E+ + H++ V+ V + P+ G
Sbjct: 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW-----APHEYGP------MLL 117
Query: 413 SVGQDTRLLLWDLE 426
D ++ + + +
Sbjct: 118 VASSDGKVSVVEFK 131
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 31/149 (20%)
Query: 299 QGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWS---- 350
S+NS+ ++ G L DG + V ++ + ++ + +W+
Sbjct: 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 351 ---------MDGKYILTGGEDDLVQVWSMED----RKVVAWGEGHNSWVSGVAFDSYWSQ 397
+ + +TGG D+LV++W + + EGH+ WV VA+
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-----S 213
Query: 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
P SV QD ++W +
Sbjct: 214 PTVLLR-----SYMASVSQDRTCIIWTQD 237
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 299 QGSINSIAFSTD---GTYLATVGRDGYLRVFDYSKEQLIC-----GGKSYYGALLCCAWS 350
+ +A+S +Y+A+V +D ++ EQ + + L +WS
Sbjct: 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 351 MDGKYILTGGEDDLVQVWSME-DRKVVAWGEGH 382
+ G + G D+ V +W + K GE H
Sbjct: 264 LSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 55/193 (28%)
Query: 225 DGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283
SVN SV W P G ++ +DG + V E K+ S + AH
Sbjct: 99 SASVN-----SVQWAPHEYGPMLLVASSDGKVSVVE-FKENGTTSPIII--------DAH 144
Query: 284 PRYSKSNPIARWHICQGSINSIAFS-------------TDGTYLATVGRDGYLRVFDYSK 330
+NS +++ + T G D ++++ Y+
Sbjct: 145 ---------------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 331 E----QLICGGKSYYGALLCCAWS---MDGKYILTGGEDDLVQVWSMED-----RKVVAW 378
+ L + + + AWS + Y+ + +D +W+ ++ +K +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 379 GEGHNSWVSGVAF 391
E + ++
Sbjct: 250 EEKFPDVLWRASW 262
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
+ S+ +S DG++L+ +G + ++D + + + + C +W + + +G
Sbjct: 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSG 192
Query: 360 GEDDLVQVWSMEDRK-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
+ + + +GH+S V G+A+ SDG + S G D
Sbjct: 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW-------RSDGL------QLASGGNDN 239
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +WD
Sbjct: 240 VVQIWDARSSIPKFTKT 256
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 16/139 (11%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC-AWSMDGKYIL 357
+ V + + V++ + ++ + WS DG ++
Sbjct: 91 IDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLS 150
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
G + LV ++ +E + + GH + V ++++ + S +
Sbjct: 151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---------------HVLSSGSRS 195
Query: 418 TRLLLWDLEM-DEIVVPLR 435
+ D+ + + + L+
Sbjct: 196 GAIHHHDVRIANHQIGTLQ 214
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKY 355
Q + +++ + L++ R G + D + G + AW DG
Sbjct: 176 QARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ--IGTLQGHSSEVCGLAWRSDGLQ 231
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+ +GG D++VQ+W HN+ V VA+
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 301 SINSIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYI 356
+ S+ +S + + D L ++ YS L ++ +L A S DG+ +
Sbjct: 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364
Query: 357 LTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAF 391
T D+ ++ W + D V + S +
Sbjct: 365 STAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 299 QGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDG 353
++ ++A+ + L G D + ++ + + S +L WS
Sbjct: 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL---IWSPHS 315
Query: 354 KYILT--GGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMY 409
K I++ G D+ + +WS + + H++ V A + DG +
Sbjct: 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL-------SPDGR--ILS- 365
Query: 410 RFGSVGQDTRLLLWDLE 426
+ D L W +
Sbjct: 366 ---TAASDENLKFWRVY 379
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWS--MDGK 354
+ I+ GT LAT D +++FD I + + G + AW+ M G
Sbjct: 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN 72
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ + D V +W E+ GH+S V+ V W+ P+ G
Sbjct: 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVC----WA-PHDYGL------ILA 121
Query: 413 SVGQDTRLLLWDLE 426
D + L
Sbjct: 122 CGSSDGAISLLTYT 135
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 34/153 (22%)
Query: 299 QGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDG 353
S+NS+ ++ G LA DG + + Y+ E K +W+
Sbjct: 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162
Query: 354 -----------------KYILTGGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDS 393
K +GG D+L+++W E+ E H+ WV VA+
Sbjct: 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW-- 220
Query: 394 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
P+ T+ S QD R+ +W +
Sbjct: 221 ---APSIGLPTSTI----ASCSQDGRVFIWTCD 246
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 299 QGSINSIAFSTD----GTYLATVGRDGYLRVFDY----SKEQLICGGKSYYGALLCCAWS 350
+ +A++ + +A+ +DG + ++ S + + +WS
Sbjct: 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS 271
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+ + G D+ V +W N V+
Sbjct: 272 ITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSA 312
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 32/144 (22%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALLCCAWSMDGKYI 356
+ SI+ + FS D TY T RD + D S Q++ K Y L + ++I
Sbjct: 218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL---KKYETDCPLNTAVITPLKEFI 274
Query: 357 LTGGEDDLVQVW----SMEDRKVVAW----GE------GHNSWVSGVAFDSYWSQPNSDG 402
+ GG + V + + + E GH ++ VA + G
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI-------SPQG 327
Query: 403 TAETVMYRFGSVGQDTRLLLWDLE 426
T + S G+D + L E
Sbjct: 328 T------SYASGGEDGFIRLHHFE 345
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 9e-11
Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 3/142 (2%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSMDGK 354
H + +ST G Y+ +DG + +D + + + + ++ +S D
Sbjct: 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
Y +T D + + +V+ E ++ G E S
Sbjct: 232 YFITSSRDTNSFLVDVSTLQVLKKYETD-CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290
Query: 415 GQ-DTRLLLWDLEMDEIVVPLR 435
+ + +E + ++
Sbjct: 291 NEGKFEARFYHKIFEEEIGRVQ 312
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 21/159 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKY 355
+ + + ++ +G L + +D V+ + + + G + KY
Sbjct: 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---GTLDGHTGTIWSIDVDCFTKY 88
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-- 413
+TG D +++W + + + VA + V V F + G +
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKSP-VPVKRVEF-------SPCGN--YFLA--ILDN 136
Query: 414 -VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQS 451
+ + ++++E D L + T
Sbjct: 137 VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 300 GSINSIAFSTDGTYLATVG--------------RDGYLRVFDYSKEQLICGGKSYYGALL 345
+N+ + ++ G R + E+ I + ++G L
Sbjct: 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN 319
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS 384
A S G +GGED +++ E + +
Sbjct: 320 TVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKA 358
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334
G +N++A S GT A+ G DG++R+ + K
Sbjct: 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 2e-10
Identities = 25/264 (9%), Positives = 61/264 (23%), Gaps = 52/264 (19%)
Query: 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGS 227
++ P+ + K+ H I + + ++ K H +
Sbjct: 160 AVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-------KVQTIVHSF----- 207
Query: 228 VNNSRCTSVTWVPGGD-----GAFVVGHADGNLYVYEKSKDGAGDSSFPVIK-------- 274
+ W G G +G + E + F + +
Sbjct: 208 ---GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264
Query: 275 -DQTQFSVAHPRYSK------------------SNPIARWHICQGSINSIAF---STDGT 312
D + + P + I S++ + T
Sbjct: 265 ADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324
Query: 313 YLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370
++TV DGY +F+ + L+ + + ++
Sbjct: 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384
Query: 371 EDRKVVAWGEGHNSWVSGVAFDSY 394
V + ++ +
Sbjct: 385 RAAFAVHPLVSRETTITAIGVSRL 408
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 4e-05
Identities = 30/257 (11%), Positives = 62/257 (24%), Gaps = 55/257 (21%)
Query: 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201
G F++ D S + I S+ + S+ + + G Y
Sbjct: 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDF----------EDTVVSTVAVDGYFY 336
Query: 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS 261
+ + A S V + P +++ +L
Sbjct: 337 IFNPKD----------IATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAV--- 382
Query: 262 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321
HP S + +I +I S + DG
Sbjct: 383 -------------PSRAAFAVHPLVS----------RETTITAIGVSRLHPMVLAGSADG 419
Query: 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMD-----GKYILTGGEDDLVQVWSMEDRKVV 376
L + + ++ L S W D KY + + + + +
Sbjct: 420 SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI 479
Query: 377 AWGEGHNSWVSGVAFDS 393
H ++ ++
Sbjct: 480 D---AHGINITCTKWNE 493
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 299 QGSINSIAFSTD---GTYLATVGRDGYLRVFD--YSKEQLICGGKSYYGALLCCAWSMDG 353
SI ++FS G +L +R ++ S + + + + G +L WS DG
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
+ T D ++W + + + H++ V + + + + VM +
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHW-----IKAPNYS--CVM----T 146
Query: 414 VGQDTRLLLWDLEMDEIVVPLR 435
D L WD ++ L+
Sbjct: 147 GSWDKTLKFWDTRSSNPMMVLQ 168
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAW--SMDGKY 355
G + + +S DG+ + T D +++D S + + + W + +
Sbjct: 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD--APVKTIHWIKAPNYSC 143
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
++TG D ++ W + +
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 15/73 (20%), Positives = 26/73 (35%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359
++N IAF LATVG DG +D + + + C ++ +G
Sbjct: 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333
Query: 360 GEDDLVQVWSMED 372
D + +
Sbjct: 334 SSYDWSKGHEFYN 346
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 17/123 (13%), Positives = 29/123 (23%), Gaps = 26/123 (21%)
Query: 300 GSINSIAFSTDG----TYLATVGRDGYLRVFDY---------------SKEQLICGGKSY 340
+A D T A +G + +
Sbjct: 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272
Query: 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNS 400
A+ A+ + T G D W + R + E + +S F N
Sbjct: 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF-------NH 325
Query: 401 DGT 403
+G
Sbjct: 326 NGN 328
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 303 NSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD---GKYILT 358
+ F T GT + + D + + D C ++S G +++
Sbjct: 6 TTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIG------CLSFSPPTLPGNFLIA 59
Query: 359 GGEDDLVQVWSMED--RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416
G + V+ W ++D + + + H V V + + DG+ + +
Sbjct: 60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCW-------SDDGS------KVFTASC 106
Query: 417 DTRLLLWDLE 426
D +WDL
Sbjct: 107 DKTAKMWDLS 116
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 4e-10
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 17/134 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAW--SMDGK 354
I+ G LAT D +++F+ E + G + W G
Sbjct: 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 68
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ + D V +W E+ + H++ V+ V + P+ G
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-----APHEYGP------LLL 117
Query: 413 SVGQDTRLLLWDLE 426
D ++ + + +
Sbjct: 118 VASSDGKVSVVEFK 131
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 31/149 (20%)
Query: 299 QGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWS---- 350
S+NS+ ++ G L DG + V ++ + ++ + +W+
Sbjct: 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158
Query: 351 ---------MDGKYILTGGEDDLVQVWSMED----RKVVAWGEGHNSWVSGVAFDSYWSQ 397
+ + +TGG D+LV++W + + EGH+ WV VA+
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS----- 213
Query: 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
P SV QD ++W +
Sbjct: 214 PTVLLR-----SYLASVSQDRTCIIWTQD 237
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 7e-08
Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 32/147 (21%)
Query: 299 QGSINSIAFSTD---GTYLATVGRDGYLRVFDYSKE-----QLICGGKSYYGALLCCAWS 350
+ +A+S +YLA+V +D ++ E + + + + L +WS
Sbjct: 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
+ G + G D+ V +W G V
Sbjct: 264 LSGNVLALSGGDNKVTLWKENLE-------GKWEPAGEVHQ-----------------GG 299
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLRRG 437
GS G +D + L
Sbjct: 300 GGSGGGGATSKEFDGPCQNEIDLLFSE 326
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 11/95 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++S G LA G D + ++ + E A + +
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK-----------WEPAGEVHQGGGGS 302
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
GG + + + + + A
Sbjct: 303 GGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLI 337
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGKYI 356
+I S+ +S DG + T RD +RV + K ++ + + +GK +
Sbjct: 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235
Query: 357 LTGGE---DDLVQVWSMEDRKVVA--WGEGHNSWVSGVAFD 392
TG + V +W + + +S V FD
Sbjct: 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD 276
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 39/238 (16%), Positives = 76/238 (31%), Gaps = 39/238 (16%)
Query: 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282
D + R + TW D F + + E +G +F V+
Sbjct: 20 KADQCYEDVRVSQTTW----DSGFCAVNPKFMALICE----ASGGGAFLVLPLGKTG--- 68
Query: 283 HPRYSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY 341
R K+ P+ H + IA+ + +A+ D + V++ L+ +
Sbjct: 69 --RVDKNVPLVCGH--TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV 124
Query: 342 GAL-------LCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVA--WGEGHNSWVSGVAF 391
L AW + +L + G D+++ VW + V + H + V +
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184
Query: 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449
+ DG + +D R+ + + +V R G P +
Sbjct: 185 -------SRDGA------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWS--MDGK 354
I+ G LAT D +++F+ E + G + W+ G
Sbjct: 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT 70
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ + D V +W E+ + H++ V+ V + P+ G
Sbjct: 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW-----APHEYGP------LLL 119
Query: 413 SVGQDTRLLLWDLEMDE 429
D ++ + + + +
Sbjct: 120 VASSDGKVSVVEFKENG 136
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 8/139 (5%)
Query: 299 QGSINSIAFSTD--GTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMD-- 352
+G + + ++ GT LA+ DG + ++ + + ++ W+
Sbjct: 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 114
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
G +L D V V ++ + + H V+ ++ + + + +
Sbjct: 115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 174
Query: 411 FGSVGQDTRLLLWDLEMDE 429
F + G D + +W D
Sbjct: 175 FVTGGADNLVKIWKYNSDA 193
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 17/127 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++S G LA G D + ++ + A + +
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN-----------LEGKWEPAGEVHQGGGGS 304
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GG + + + + + A T Y F +
Sbjct: 305 GGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLI------MKERRFTASYTFAKFSTGS 358
Query: 419 RLLLWDL 425
LL D+
Sbjct: 359 MLLTKDI 365
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 299 QGSINSIAF------STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL-------L 345
+ SI + D L + RD + ++ +E+ + AL
Sbjct: 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS 80
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
A S + + ++ D +++W + GH S V VAF
Sbjct: 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGK-- 354
Q + S+AFS D + + G + +++++ E +++ + C +S K
Sbjct: 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177
Query: 355 --------YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAET 406
Y + G D ++VW+ + + + H S V+ ++ + +G
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF-KAHESNVNHLSI-------SPNGK--- 226
Query: 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
+ G+D +LL+WD+
Sbjct: 227 ---YIATGGKDKKLLIWDILNLTYPQREF 252
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 34/175 (19%)
Query: 299 QGSINSIAFSTDG----------TYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCC 347
++ + +S Y A+VG DG L+V++ + + +
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHE--SNVNHL 219
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAE 405
+ S +GKYI TGG+D + +W + + S ++ +AF W +D
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-- 277
Query: 406 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460
+ +++L + P Q +
Sbjct: 278 --------------VKIFNLMTQSKAPVCT---IEAEPITKAEGQKGKNPQCTSL 315
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++N ++ S +G Y+AT G+D L ++D + A++ +++
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV 272
Query: 359 GGEDDLVQVWSMEDRKVVAWG-------------EGHNSWVSGVAF 391
G D V+++++ + +G N + +A+
Sbjct: 273 GT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL-------------L 345
+IN IAF+ ++A G D +++F+ + +
Sbjct: 255 GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCT 313
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSME 371
AW+ GK + G D +++ +S E
Sbjct: 314 SLAWNALGKKLFAGFTDGVIRTFSFE 339
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + D +A+V RDG +R++ + L + G L + + + +L
Sbjct: 18 DQDVRDVVAVDDSK-VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLF 76
Query: 359 GGEDDLV---QVWSMEDRKVVAWGEGHNSWVSGVAFD 392
GG+D ++ +++ + GH V ++F
Sbjct: 77 GGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ 113
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKY 355
+ +A DG + DG +++ D ++ ++Y G + C +G
Sbjct: 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL---RTYEGHESFVYCIKLLPNGD- 238
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
I++ GED V++WS E+ + + V
Sbjct: 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC 274
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-08
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 299 QGSINSI-AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357
S+ S T D ++++ K G + + A DG +
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG-IHNDVVRHLAVVDDGH-FI 199
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417
+ D L+++ M V+ EGH S+V + +G S G+D
Sbjct: 200 SCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL-------LPNG-------DIVSCGED 245
Query: 418 TRLLLWDLEMDEIVVPLR 435
+ +W E + +
Sbjct: 246 RTVRIWSKENGSLKQVIT 263
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLR---VFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
QG +NS+ + ++ L G+D + +F S E + + G + ++
Sbjct: 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGV 116
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSY 394
+++G D +VW ++ +V + HN+ V S+
Sbjct: 117 VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSF 153
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + I +G + + G D +R++ L ++ +G I+
Sbjct: 225 ESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV 282
Query: 359 GGEDDLVQVWSMEDRKVVAWG--EGHNSWV 386
G D+LV+++S E + + +G
Sbjct: 283 GSSDNLVRIFSQEKSRWASEDEIKGELRSG 312
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
D + + D V++WS +D+ + +++ V + +S+
Sbjct: 23 DVVAV-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY-------DSEKE-- 72
Query: 406 TVMYRFGSVGQDT---RLLLWDLEMDEIVVPLR 435
G+DT + L+ ++ + L
Sbjct: 73 ----LLLFGGKDTMINGVPLFATSGEDPLYTLI 101
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 38/328 (11%), Positives = 82/328 (25%), Gaps = 69/328 (21%)
Query: 107 GGNGGSKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNV--GDAIFISDLNSQDKD 164
N K S S + G + + GD +F +D
Sbjct: 46 LDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY---RITRED 102
Query: 165 PIKSIHFSNSNPVCH------------AFDQDAKDGHDLLIGLNSGD----VYSVSLRQQ 208
K + F + + D H L+ ++
Sbjct: 103 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT--DVKGTTYIWKFHPFAD 160
Query: 209 LQDVGK----KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264
+ + + + TSV G G +G + + E
Sbjct: 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE----- 213
Query: 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---G 321
+ + + SI S+ FS G+ LA G
Sbjct: 214 LSTLRPLYNFESQHSMINN---------------SNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 322 YLRVFDYSKEQLICGGKSYYGALLCC-------------AWSMDGKYILTGGEDDLVQVW 368
+ +++ + I + +++ G+ + + G D ++ W
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318
Query: 369 SMEDRKVVAWGEGHNSWVSG----VAFD 392
++ ++ + H + +A D
Sbjct: 319 DVKTKERITTLNMHCDDIEIEEDILAVD 346
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 27/119 (22%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD-------------------------YSKEQL 333
I S++ + + DGYL+V+D Q
Sbjct: 16 DADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 73
Query: 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
I + ++S D + ED+ +V + + + + H+ W
Sbjct: 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---GGKSY-YGALLCCAWSMDGK 354
+ S++F+ G L + G DG LR +D ++ I A G
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350
Query: 355 YILTGGEDD---LVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
+ G D L + W + + +
Sbjct: 351 SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 24/196 (12%), Positives = 47/196 (23%), Gaps = 45/196 (22%)
Query: 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM 351
I R + + +FS D + D +V + L K + L S
Sbjct: 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133
Query: 352 D---GKYILTGGEDDLVQVW------------------SMEDRKVVAWGEGHNSWVSGVA 390
D ++ +W ++E + V + + + V
Sbjct: 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 193
Query: 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGG------SP 443
G + + + + +L + + S
Sbjct: 194 IS-------ERGL-------IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239
Query: 444 TFSTGSQ---SAHWDN 456
FS AH N
Sbjct: 240 KFSPQGSLLAIAHDSN 255
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
++ + + DG + + D ++V+D E + + + + + DG ++++
Sbjct: 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVS 294
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D ++VW +E + GH S SG+ N S D+
Sbjct: 295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-----DN----------ILVSGNADS 339
Query: 419 RLLLWDLEMDEIVVPLR 435
+ +WD++ + + L+
Sbjct: 340 TVKIWDIKTGQCLQTLQ 356
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 19/143 (13%), Positives = 50/143 (34%), Gaps = 29/143 (20%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWSMDGKY 355
Q + + + L + D ++++D Q + G + A+ C + + +
Sbjct: 319 QSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNF 374
Query: 356 ILTGGEDDLVQVWSMEDRKVVA-----WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
++T +D V++W ++ + + G V + +
Sbjct: 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS-------NTKL------V 421
Query: 411 FGSVGQD----TRLLLWDLEMDE 429
++ T+LL+ D ++D
Sbjct: 422 CAVGSRNGTEETKLLVLDFDVDM 444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
G + S + + + D L+V++ + I + + C K +++
Sbjct: 159 TGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS 214
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
G D ++VW +E + + GH + V V +D
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 1/108 (0%)
Query: 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 344
+ + HI + + F A + + + + + K + +
Sbjct: 62 KCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHV 121
Query: 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
+ C G I++G +D+ ++VWS K + GH V
Sbjct: 122 ITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 168
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ S+ F DG ++ + D +RV+D I + +++
Sbjct: 279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS 334
Query: 359 GGEDDLVQVWSMEDRKVVAWGEG---HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
G D V++W ++ + + +G H S V+ + F+ N +
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KN----------FVITSS 379
Query: 416 QDTRLLLWDLEMDEIVVPLRRGPLGG 441
D + LWDL+ E + L GG
Sbjct: 380 DDGTVKLWDLKTGEFIRNLVTLESGG 405
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 22/133 (16%)
Query: 302 INSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYG---ALLCCAWSMDG---K 354
N+I+ + D T + + G + D S + + G L D +
Sbjct: 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ 211
Query: 355 YILTGGEDDLVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
+I+T D+ +++ +V W GH +VS + D S
Sbjct: 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC-------GKDY-------LLLS 257
Query: 414 VGQDTRLLLWDLE 426
G D ++ WD +
Sbjct: 258 AGGDDKIFAWDWK 270
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 35/310 (11%), Positives = 87/310 (28%), Gaps = 60/310 (19%)
Query: 85 VVRSAAAKLLGTGNGSRTLGFGGGNGGSKSISGS------SRIGSLGASSSSTSMTNTNF 138
++ S L+ + L F + +G S ++ ++
Sbjct: 10 LLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSEN 69
Query: 139 DGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCH-AFDQDAKDGHDLLIGLNS 197
+ + + N GD+I + + + + D + +
Sbjct: 70 ENENKKLKSNKGDSIKRTAAKVPSPGLGAPPI---YSYIRNLRLTSD--ESRLIACA--D 122
Query: 198 GD----VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253
D V+ V + KL ++K R +++ ++ G
Sbjct: 123 SDKSLLVFDVDKTSKN---VLKLRKRFCFSK-------RPNAISIAEDDT-TVIIADKFG 171
Query: 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-- 311
++Y + + + I H + + D
Sbjct: 172 DVYSIDINSIPEEKFTQEPIL-------GH---------------VSMLTDVHLIKDSDG 209
Query: 312 -TYLATVGRDGYLRVFDYSKEQLI---CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367
++ T RD ++++ Y + ++ G + D +L+ G DD +
Sbjct: 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--HFVSSICCGKDY-LLLSAGGDDKIFA 266
Query: 368 WSMEDRKVVA 377
W + K ++
Sbjct: 267 WDWKTGKNLS 276
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 27/176 (15%)
Query: 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293
T+ + P FV + G + + D + D+ P +
Sbjct: 230 TAAEFHPNSCNTFVYSSSKGTIRLC--------DMRASALCDRHSKLFEEPEDPSNRSFF 281
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL--------- 344
I SI+ + FS G Y+ T ++V+D + E + L
Sbjct: 282 SEIIS--SISDVKFSHSGRYMMT-RDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338
Query: 345 -------LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
C W+ ++TG ++ +++ ++ + +
Sbjct: 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP 394
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 28/135 (20%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCA------------ 348
I+++ F+ G LAT + G + +F +E I +
Sbjct: 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKS 89
Query: 349 -------------WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE---GHNSWVSGVAFD 392
+ L D +++W + +R G +
Sbjct: 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV 149
Query: 393 SYWSQPNSDGTAETV 407
+ P V
Sbjct: 150 TTLRVPVFRPMDLMV 164
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 26/152 (17%)
Query: 299 QGSINSIAFS-TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL------------ 345
G IN++ +G Y+ + G DG + ++D +
Sbjct: 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102
Query: 346 -CCAWS-MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403
W D + D ++VW + V + T
Sbjct: 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD-VFNFEETVYSHHM-------SPVST 154
Query: 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
++ + ++ L DL+ L+
Sbjct: 155 KHCLV---AVGTRGPKVQLCDLKSGSCSHILQ 183
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 27/155 (17%)
Query: 299 QGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYY---------------- 341
+ I ++++S Y LAT D ++++D + +
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245
Query: 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNS- 400
G + ++ DG ++LT G D+ +++W+ + + G S S S
Sbjct: 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
+ V + + ++ + E + L+
Sbjct: 306 EFV---------FVPYGSTIAVYTVYSGEQITMLK 331
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ + + V + V+ + I K +Y + CC + + + + +
Sbjct: 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
G D + W + V + +
Sbjct: 352 GSRDCNILAWVPSLYEPV---PDDDETTTKSQL 381
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+++ F ++ L + RD + + S + + + + +
Sbjct: 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD---DDETTTKSQLNPAFEDAWS 390
Query: 359 GGEDDL-VQVWSMED 372
+++ WS
Sbjct: 391 SSDEEGGTSAWSHPQ 405
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 26/140 (18%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS-MDGKYILTG 359
S + L + RV + + + G + ++G+Y+L+G
Sbjct: 3 GFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSG 62
Query: 360 GEDDLVQVWSMEDRKVVA-------------WGEGHNSWVSGVAFDSYWSQPNSDGTAET 406
G D ++ ++ +E+ + + H V V + D
Sbjct: 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP------HDTG--- 113
Query: 407 VMYRFGSVGQDTRLLLWDLE 426
F S D L +WD
Sbjct: 114 ---MFTSSSFDKTLKVWDTN 130
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFD-YSKEQLICGGKSYYGALLCCAWSMDGKYIL 357
+ + S +L + DG +R +D + + A + + ++
Sbjct: 352 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSDNILV 407
Query: 358 TGGEDDLVQVWSMEDRKVVAWG-EGHNSWVSGVAFD 392
+G ++ ++++ K+V + V F
Sbjct: 408 SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 13/95 (13%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
S+ +++ G + + D L V+D ++ + + + + + + K ++
Sbjct: 270 MASVRTVSG--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
D +++W +E+ +++ +GH + V +
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 362
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV-FDYSKEQLICGGKSYYGALLCCA 348
++ D L+ + L+ ++ + + +++ C
Sbjct: 69 KGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCL 128
Query: 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408
+ Y++TG +D +++V+ ++K + GH+ V + + + G
Sbjct: 129 QF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--------AHGG----- 174
Query: 409 YRFGSVGQDTRLLLWDLEMDEIVVPLR 435
S D + +WD++
Sbjct: 175 -ILVSGSTDRTVRVWDIKKGCCTHVFE 200
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
S+ + + Y+ T D +RV+D ++ + + G + ++ G +++
Sbjct: 121 MTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVS 178
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
G D V+VW ++ EGHNS V + + + +D
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-----VEYKNIK------YIVTGSRDN 227
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 450
L +W L + V +
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 53/397 (13%), Positives = 117/397 (29%), Gaps = 71/397 (17%)
Query: 158 LNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLV 217
+ +D+ IK + F G L++ VY +SL +K++
Sbjct: 53 IKLEDRSAIKEMRFVK--------------GIYLVVINAKDTVYVLSLYS------QKVL 92
Query: 218 GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277
+ TS+ D + G +G++ VY+ +D ++ +
Sbjct: 93 TTVF-------VPGKITSIDTDASLDWMLI-GLQNGSMIVYDIDRDQLSSFKLDNLQKSS 144
Query: 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--- 334
F A I SI ++ + + + + ++
Sbjct: 145 FFPAARL---------------SPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSF 189
Query: 335 --------CGGKSYYGA-------LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 379
GG ++ + + +I+T ED+ + W ++
Sbjct: 190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249
Query: 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI--VVPLRRG 437
+ ++ D +++ + +Y + LL + L
Sbjct: 250 TVFETEINVPQPDY-IRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308
Query: 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV--HTEPLSGLIFTQ 495
LG +P +S S ++ + + +P P+V P
Sbjct: 309 DLGYTPRYSITS----YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364
Query: 496 ESVLTVCREGHIKIWMRP-GVAESQSSSSETVLSTSS 531
+L + G I+ + P G+ ++S LS
Sbjct: 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLR 401
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 296 HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY 355
+ + AF LA G + ++ + +++ + A+ + Y
Sbjct: 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLED-RSAIKEMRFVKGI-Y 71
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415
++ D V V S+ +KV+ ++ + D + D
Sbjct: 72 LVVINAKDTVYVLSLYSQKVLT-TVFVPGKITSIDTD-----ASLDWML--------IGL 117
Query: 416 QDTRLLLWDLE 426
Q+ ++++D++
Sbjct: 118 QNGSMIVYDID 128
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
GS+ + + D + T D +RV+D + +++ + A+L + ++T
Sbjct: 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR--FNNGMMVT 228
Query: 359 GGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDS 393
+D + VW M + GH + V+ V FD
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 266
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 18/95 (18%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+ ++N + F D Y+ + D ++V++ S + + + + C + +++
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVS 311
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
G D+ +++W +E + EGH V + FD+
Sbjct: 312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 299 QGSINSI-AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357
+ + D + + RD ++++D + + + G++LC D + I+
Sbjct: 130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--YDERVII 187
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
TG D V+VW + +++ H V + F+
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 35/161 (21%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWSMDGKY 355
+ I + + + + D +R++D + G + + D K
Sbjct: 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-----RFDNKR 348
Query: 356 ILTGGEDDLVQVWSMEDRKVVAWG---------EGHNSWVSGVAFDSYWSQPNSDGTAET 406
I++G D ++VW + H+ V + FD
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE------------- 395
Query: 407 VMYRFGSVGQDTRLLLWDLEMDEIVVPLR-RGPLGGSPTFS 446
++ S D +L+WD D R P S
Sbjct: 396 --FQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
D + I++G D+ +++W + GH V + +D
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 183
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 32/289 (11%), Positives = 81/289 (28%), Gaps = 56/289 (19%)
Query: 121 IGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHA 180
I + + + ++ G+ I I L+S+ ++ I ++N + +
Sbjct: 74 ITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITI--LDSKTNKVLREIEVDSANEIIYM 131
Query: 181 FDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP 240
+ + + + N G + S + + + + + +S
Sbjct: 132 YGHNEVNTEYFIWADNRGTIGFQSY-----EDDSQYIVHSAKS------DVEYSSGVLHK 180
Query: 241 GGDGAFV-VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299
D + + DG L VY S + ++F V +
Sbjct: 181 --DSLLLALYSPDGILDVYNLSS---------PDQASSRFPVDE---------------E 214
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG-----ALLCCAWSMDGK 354
I + F+ +G ++ D + FD K+ +Y + GK
Sbjct: 215 AKIKEVKFADNGYWMVV-ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273
Query: 355 YILTGGEDD----------LVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393
++ + + W+ ++ + +
Sbjct: 274 NMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCG 322
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 4e-08
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 7/137 (5%)
Query: 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS-TDGTYLATVGRDGY 322
S +T + A + G + + ++ T + +A DG
Sbjct: 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173
Query: 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV------V 376
+ V ++ +C A+ WS GK + G ++ V + ++
Sbjct: 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 377 AWGEGHNSWVSGVAFDS 393
+ H V V +
Sbjct: 234 FYESDHPVRVLDVLWIG 250
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 33/223 (14%)
Query: 148 NVGDAIFISDLNSQDKDPIKSIHFSNSNPVCH-AFDQDAKDGHDLLIGLNSGDVYSVSLR 206
N+ D ++ D ++ + P+ H A D ++ G + +
Sbjct: 66 NLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDV 125
Query: 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266
+ + K+ Y+K + W P V ADG++ V + ++
Sbjct: 126 RTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185
Query: 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326
++ P ++ S+ +S G LA ++G + +
Sbjct: 186 CATLPS--------------------------TVAVTSVCWSPKGKQLAVGKQNGTVVQY 219
Query: 327 D------YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363
+ +L W + + D
Sbjct: 220 LPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.61 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.52 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.49 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.44 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.4 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.4 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.39 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.38 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.36 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.3 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.3 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.28 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.18 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.16 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.14 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.11 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.05 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.05 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.04 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.04 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.95 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.92 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.9 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.85 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.81 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.76 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.76 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.75 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.74 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.68 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.63 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.58 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.56 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.47 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.45 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.45 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.42 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.41 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.39 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.38 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.36 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.35 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.34 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.32 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.31 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.3 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.24 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.24 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.23 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.19 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.15 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.13 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.13 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.12 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.09 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.08 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.08 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.05 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.04 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.02 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.01 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.0 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.99 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.93 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.93 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.87 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.84 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.83 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.81 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.77 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.67 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.65 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.64 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.62 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.56 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.52 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.49 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.46 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.44 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.35 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.35 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.34 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.26 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.25 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.22 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.18 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.08 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.87 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.81 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.68 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.63 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.61 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.57 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.56 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.53 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.51 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.43 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.36 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.29 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.24 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.95 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.89 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.89 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.58 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.38 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.26 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.17 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.97 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.52 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.15 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 94.06 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.49 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.59 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.38 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.86 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.66 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.43 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.26 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.48 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 86.35 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 83.94 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 83.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.63 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 80.97 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=384.89 Aligned_cols=364 Identities=15% Similarity=0.173 Sum_probs=288.9
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----Cc
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~ 199 (548)
.+.+|...|.+++|+|+|++|++++.| +|+|||+..+.......+..+...+.+++|+|+ +.+|++++.+ +.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d---g~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE---SKRIAAVGEGRERFGH 130 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT---SCEEEEEECCSSCSEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC---CCEEEEEECCCCceeE
Confidence 356899999999999999999999888 999999976543345567778899999999999 7788888765 47
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||.... .. ....|...|++++|+|++..+|++++.|++|++||...
T Consensus 131 v~~wd~~~~----~~----------~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~----------------- 179 (611)
T 1nr0_A 131 VFLFDTGTS----NG----------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP----------------- 179 (611)
T ss_dssp EEETTTCCB----CB----------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------------
T ss_pred EEEeeCCCC----cc----------eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-----------------
Confidence 888875431 01 11248999999999999875799999999999999764
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-------ecCCceEEEEEccC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-------SYYGALLCCAWSMD 352 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~l~~spd 352 (548)
.+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|+
T Consensus 180 ---------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 180 ---------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp ---------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ---------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence 23356678899999999999999999999999999999999999888774 79999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEE-------------------------------------------eccCCCCCeEEE
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVA-------------------------------------------WGEGHNSWVSGV 389 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~-------------------------------------------~~~~h~~~V~~v 389 (548)
+++|++++.|+.|++||+++++++. .+.+|...|+++
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l 330 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence 9999999999999999998876543 345799999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCCC-------------------------
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGGS------------------------- 442 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~~------------------------- 442 (548)
+|+| || .+|++++.|+.|++||+.++++...+... ..+..
T Consensus 331 ~~sp-------dg------~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 331 SSSA-------DG------KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp EECT-------TS------SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred EEeC-------CC------CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence 9999 99 79999999999999999988765543110 00111
Q ss_pred -------------------ceecCCCCc------------------------------ccc-CCeeeecccCCCCceeec
Q 008939 443 -------------------PTFSTGSQS------------------------------AHW-DNVCPVGTLQPAPSMRDV 472 (548)
Q Consensus 443 -------------------~~~~~~~~~------------------------------~~~-d~~~~~g~~~~~~~~~d~ 472 (548)
+.+++++.. ... ...+..+..++.+++||+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~ 477 (611)
T 1nr0_A 398 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477 (611)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred ccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEc
Confidence 112222200 001 234577788889999998
Q ss_pred CCCCc--eEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC-CCcc---cc-CCCCcEE--EecCCCCceEeeec
Q 008939 473 PKLSP--LVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG-VAES---QS-SSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 473 ~~~~~--~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~-~~~~---~~-~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
..... +.. .+|...|++|+|+||+ |++++.|++|++|++.. .... .. .|...|. +|+||+++|+++..
T Consensus 478 ~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 478 SGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp ETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC
Confidence 76432 333 6899999999999984 99999999999999876 3321 12 3777787 88999999999987
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.+.+
T Consensus 557 D~~v 560 (611)
T 1nr0_A 557 DNSV 560 (611)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 7654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=374.35 Aligned_cols=326 Identities=13% Similarity=0.141 Sum_probs=271.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
.+.+.+..++|+|+|++|+++.++.++||++.++. .+..+..|...+++++|+|+ +.+|++|+.||.|+|||+.+
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~--~~~~~~~h~~~v~~~~~spd---g~~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS---GYYCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEESSS
T ss_pred cccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcc--cCeEecCCCCceEEEEECCC---CcEEEEEeCCCCEEEeECCC
Confidence 34566778999999999999988899999998744 77888889999999999999 88999999999999999864
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.. ..+.... ..|...|.+++|+|++. .|++++.+ +.|++||...
T Consensus 91 ~~----~~~~~~~------~~~~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v~~wd~~~--------------------- 138 (611)
T 1nr0_A 91 TT----HILKTTI------PVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT--------------------- 138 (611)
T ss_dssp TT----CCEEEEE------ECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC---------------------
T ss_pred Cc----ceeeEee------cccCCceEEEEECCCCC-EEEEEECCCCceeEEEEeeCCC---------------------
Confidence 11 1111111 13788999999999999 77777654 4788887432
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.+..+.+|...|++++|+|++. .|++++.|+.|++||..+++++..+.+|...|.+++|+||+++|++|+.|
T Consensus 139 -------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 139 -------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp -------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 2334567889999999999986 69999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceeEEecc-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 363 DLVQVWSMEDRKVVAWGE-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+.|++||+.+++++..+. +|...|.+++|+| || .+|++++.|+.|++||+++++++..+.
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-------dg------~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-------DG------TKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-------CC------CEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 999999999999888874 7999999999999 99 799999999999999999999988876
Q ss_pred cCCCCCC--ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 436 RGPLGGS--PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 436 ~~~~~~~--~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
....... ..+.. ....+..+..++.+++|+.....+...+.+|...|++++|+|++ |++++.|++|++||
T Consensus 279 ~~~~~~~~~~~~~~------~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 279 VGTRIEDQQLGIIW------TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352 (611)
T ss_dssp CCSSGGGCEEEEEE------CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCccceeEEEEE------cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 5322111 11111 12445677788899999998888888889999999999999974 99999999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
+.++.
T Consensus 353 ~~~~~ 357 (611)
T 1nr0_A 353 ISTGI 357 (611)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=342.74 Aligned_cols=286 Identities=17% Similarity=0.267 Sum_probs=249.4
Q ss_pred cCCCCCCceeEEeCCC----CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 126 ASSSSTSMTNTNFDGK----GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~----g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+|.+.|.+++|+++ +.+|++++.| +|+||++..+.......+..|...+.+++|+++ +..+++++.|+.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~---~~~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT---LPIAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS---SSEEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC---CCEEEEEeCCCcE
Confidence 4579999999999875 6689998888 999999987543344567778999999999998 7799999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+++ ++.+.. .. .+...+.+++|+|+++ +|++++.||.|++||++..
T Consensus 105 ~lWd~~~-----~~~~~~-~~------~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~----------------- 154 (321)
T 3ow8_A 105 RLWDLEN-----GKQIKS-ID------AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESG----------------- 154 (321)
T ss_dssp EEEETTT-----TEEEEE-EE------CCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTC-----------------
T ss_pred EEEECCC-----CCEEEE-Ee------CCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCC-----------------
Confidence 9999876 222221 11 2567889999999999 9999999999999999862
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
.....+..|...|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+
T Consensus 155 ---------~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 155 ---------KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp ---------SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred ---------ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 33455667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
.|+.|++||+++++.+..+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-------~~------~~l~s~s~D~~v~iwd~~~~~~~~~~------ 286 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-------DD------THFVSSSSDKSVKVWDVGTRTCVHTF------ 286 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTTEEEEEE------
T ss_pred CCCeEEEEECCCcceeEEEcCCCCceEEEEECC-------CC------CEEEEEeCCCcEEEEeCCCCEEEEEE------
Confidence 999999999999999999999999999999999 88 78999999999999999988876543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
.+|.+.|.+++|+|+ .|++++.||.|+|||.+
T Consensus 287 -----------------------------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 -----------------------------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp -----------------------------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred -----------------------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 358899999999997 49999999999999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=353.69 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=255.2
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
....+|..+|++++|+|++.++++++.| .|+|||+.++. .+..+..|...|.+++|+|+ +.+|++|+.||.|++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~---~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS---GKLLASCSADMTIKL 176 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSCCCE
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCC---CCEEEEEeCCCeEEE
Confidence 3466899999999999999999999888 99999999855 88889999999999999998 789999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+... + .... ...|...|++++|+|++. +|++|+.|+.|++||+++
T Consensus 177 wd~~~~-----~-~~~~------~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~-------------------- 223 (410)
T 1vyh_C 177 WDFQGF-----E-CIRT------MHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT-------------------- 223 (410)
T ss_dssp EETTSS-----C-EEEC------CCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT--------------------
T ss_pred EeCCCC-----c-eeEE------EcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC--------------------
Confidence 998751 1 2111 124889999999999998 999999999999999986
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC----------
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD---------- 352 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd---------- 352 (548)
...+..+..|...|.++.|+|++++|++++.|+.|++||+.++++...+..|...|.+++|+|+
T Consensus 224 ------~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 224 ------GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp ------CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred ------CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 2456778889999999999999999999999999999999999999999999999999999996
Q ss_pred ----------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 353 ----------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 353 ----------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
+.+|++|+.|+.|++||+++++++..+.+|..+|.+++|+| +| .+|++++.|+.|++
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-------~g------~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-------GG------KFILSCADDKTLRV 364 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SCEEEEETTTEEEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-------CC------CEEEEEeCCCeEEE
Confidence 67899999999999999999999999999999999999999 88 78999999999999
Q ss_pred EECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEE
Q 008939 423 WDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLT 500 (548)
Q Consensus 423 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t 500 (548)
||+.+++++. .+.+|...|++++|+|+ .|++
T Consensus 365 wd~~~~~~~~-----------------------------------------------~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 365 WDYKNKRCMK-----------------------------------------------TLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp ECCTTSCCCE-----------------------------------------------EEECCSSCEEEEEECSSSSCEEE
T ss_pred EECCCCceEE-----------------------------------------------EEcCCCCcEEEEEEcCCCCEEEE
Confidence 9998766443 34468999999999997 4999
Q ss_pred EECCCeEEEEeC
Q 008939 501 VCREGHIKIWMR 512 (548)
Q Consensus 501 ~s~Dg~I~iW~~ 512 (548)
++.||+|++|++
T Consensus 398 gs~D~~i~vW~~ 409 (410)
T 1vyh_C 398 GSVDQTVKVWEC 409 (410)
T ss_dssp EETTSEEEEEC-
T ss_pred EeCCCcEEEEeC
Confidence 999999999986
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=360.95 Aligned_cols=350 Identities=19% Similarity=0.285 Sum_probs=299.6
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..+|...+.+++|+|++.++++++.+ .|++||.. .+.+..+..+...+.+++|+|+ +..|++++.|+.|++||
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~---~~~~~~~~~~~~~v~~v~~~~d---~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVNGVAFRPD---GQTIASASDDKTVKLWN 290 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---SCEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEE
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCEEEEEe
Confidence 45788999999999999999998877 99999975 3477888889999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
... +.+ ... ..|...|.+++|+|++. .|++++.|+.|++||+..
T Consensus 291 ~~~------~~~-~~~------~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~---------------------- 334 (577)
T 2ymu_A 291 RNG------QLL-QTL------TGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG---------------------- 334 (577)
T ss_dssp TTS------CEE-EEE------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTS----------------------
T ss_pred CCC------cEE-EEE------ecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC----------------------
Confidence 654 111 111 13788999999999999 999999999999999764
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
..+..+..|...|.+++|+|++++|++++.|+.|++||. +++++..+..|...|.+++|+||+++|++++.|+.
T Consensus 335 -----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 335 -----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp -----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred -----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 234556778899999999999999999999999999996 57788888999999999999999999999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec-CCCCCCc
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR-GPLGGSP 443 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~ 443 (548)
|++||. +++.+..+.+|...|.+++|+| |+ .+|++++.|+.|++||+. ++++..+.. ...+..+
T Consensus 409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-------d~------~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSP-------DD------QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGV 473 (577)
T ss_dssp EEEECT-TCCEEEEEECCSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEE
T ss_pred EEEEeC-CCCEEEEecCCCCCeEEEEECC-------CC------CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEE
Confidence 999995 5778888999999999999999 88 799999999999999974 555655554 3556778
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc-ccc
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE-SQS 520 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~-~~~ 520 (548)
+|++++ ..+..+..+..+++|+. ..+++..+.+|...|++|+|+|++ |++++.||.|++||+++... ...
T Consensus 474 ~~spd~------~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 474 AFSPDG------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp EECTTS------CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred EEcCCC------CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEc
Confidence 888876 45677888889999994 678889999999999999999984 99999999999999865442 334
Q ss_pred CCCCcEE--EecCCCCceEeeeccccc
Q 008939 521 SSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 521 ~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|...|. +|+||+++|+++...+.+
T Consensus 547 ~h~~~v~~~~fs~dg~~l~s~~~D~~i 573 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDGQTIASASSDKTV 573 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 7888887 789999999999887765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=332.22 Aligned_cols=287 Identities=12% Similarity=0.145 Sum_probs=249.9
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+.+|...|.+++|+|+++++++++.| .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~v~i 123 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTT---SSEEEEEETTCEEEE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--cceEeecCCccEEEEEECCC---CCEEEEEeCCCeEEE
Confidence 3466899999999999999999999888 99999999854 88888889999999999998 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++.... ........ ...|...|.++.|++++ .|++++.|+.|++||+.+
T Consensus 124 w~~~~~~--~~~~~~~~------~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~-------------------- 173 (340)
T 1got_B 124 YNLKTRE--GNVRVSRE------LAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIET-------------------- 173 (340)
T ss_dssp EETTTCS--BSCEEEEE------EECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTT--------------------
T ss_pred EECccCC--CcceeEEE------ecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCC--------------------
Confidence 9987521 11111111 12488999999999987 489999999999999986
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|
T Consensus 174 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 174 ------GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 23466778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 363 DLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.|++||+++++.+..+. .+...|.+++|+| +| .+|++++.|+.|++||+.+++.+.
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~g~~d~~i~vwd~~~~~~~~-------- 306 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-------SG------RLLLAGYDDFNCNVWDALKADRAG-------- 306 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTCCEEE--------
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECC-------CC------CEEEEECCCCeEEEEEcccCcEee--------
Confidence 999999999988877665 2345899999999 99 799999999999999998776543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.+.+|...|++++|+|++ |++++.|+.|+|||
T Consensus 307 ---------------------------------------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 ---------------------------------------VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------------------------EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 345699999999999984 99999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=337.48 Aligned_cols=291 Identities=12% Similarity=0.152 Sum_probs=232.7
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccC---------CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS---------QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~---------~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.|...+.+++|+|||++|+.++++++++||... ...........+...|.+++|+|+ + .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~-~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---R-GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---T-EEEEEETTS
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---C-eEEEEECCC
Confidence 356678899999999999998876888886321 011112222335668999999997 3 688999999
Q ss_pred cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
.|++||+++. +.+.. ..+. ...|...|++|+|+|++. +|++|+.|+.|++||+++
T Consensus 104 ~v~lWd~~~~-----~~~~~-~~~~--~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~---------------- 158 (344)
T 4gqb_B 104 AVELWELDEN-----ETLIV-SKFC--KYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQ---------------- 158 (344)
T ss_dssp EEEEEEECTT-----SSCEE-EEEE--EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------------
T ss_pred EEEEEeccCC-----CceeE-eecc--ccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCC----------------
Confidence 9999999862 21111 1111 113899999999999999 999999999999999986
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccC-CC
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMD-GK 354 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spd-g~ 354 (548)
..++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+. .+...+.+++|+|+ ++
T Consensus 159 ----------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 228 (344)
T 4gqb_B 159 ----------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE 228 (344)
T ss_dssp ----------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT
T ss_pred ----------CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCc
Confidence 34577888999999999999987 578999999999999999998877653 45567999999995 56
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
+|++|+.|+.|+|||+++++++..+.+|...|++++|+| +|. ++|++++.|+.|+|||+++++++.
T Consensus 229 ~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-------~g~-----~~lasgs~D~~i~vwd~~~~~~~~-- 294 (344)
T 4gqb_B 229 VFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-------HSV-----PFLASLSEDCSLAVLDSSLSELFR-- 294 (344)
T ss_dssp EEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS-------SSS-----CCEEEEETTSCEEEECTTCCEEEE--
T ss_pred ceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-------CCC-----eEEEEEeCCCeEEEEECCCCcEEE--
Confidence 889999999999999999999999999999999999999 872 479999999999999998876532
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEe
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWM 511 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~ 511 (548)
+.+|.+.|++|+|+|+. |++++.|++|++|+
T Consensus 295 ----------------------------------------------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 295 ----------------------------------------------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp ----------------------------------------------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 24699999999999963 67999999999999
Q ss_pred CCCCCc
Q 008939 512 RPGVAE 517 (548)
Q Consensus 512 ~~~~~~ 517 (548)
++.+..
T Consensus 329 v~~~~~ 334 (344)
T 4gqb_B 329 VPTEPL 334 (344)
T ss_dssp CCC---
T ss_pred CCCCCC
Confidence 987653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=351.60 Aligned_cols=378 Identities=18% Similarity=0.257 Sum_probs=300.5
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|++++|+|||++|++++.| .|+|||.. .+.+..+..|...|++++|+|+ +.+|++++.|+.|++||
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~---~~~~~~l~gh~~~V~~l~fspd---g~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLWN 85 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC---CCEEEEEeCCCCCEEEEEECCC---CCEEEEEeCCCEEEEEE
Confidence 56899999999999999999999888 99999964 3588899999999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC------CC--ccccc--
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD------SS--FPVIK-- 274 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~------~~--~~~~~-- 274 (548)
+.. +.+.. . ..|...|.+++|+|++. +|++++.|+.+++|+........ .. .....
T Consensus 86 ~~~------~~~~~-~------~~~~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (577)
T 2ymu_A 86 RNG------QLLQT-L------TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 151 (577)
T ss_dssp TTS------CEEEE-E------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCC------CEEEE-E------ECCCCCEEEEEECCCCC-EEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCC
Confidence 653 22211 1 13788999999999999 99999999999999975311000 00 00000
Q ss_pred ---------------------------------------ccceeeeecCC------CCCCCCeeEeeecCCCeEEEEECC
Q 008939 275 ---------------------------------------DQTQFSVAHPR------YSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 275 ---------------------------------------~~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
+...+...... ....+.+..+..|...|.+++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~ 231 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred ccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECC
Confidence 00000000000 012344566778999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||.. ++.+..+.+|...|.++
T Consensus 232 dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~ 309 (577)
T 2ymu_A 232 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV 309 (577)
T ss_dssp TSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEE
Confidence 99999999999999999964 67788889999999999999999999999999999999964 67778889999999999
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCce
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSM 469 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~ 469 (548)
+|+| ++ .+|++++.|+.|++||+...+..........+..+++++++ ..+..+..++.+++
T Consensus 310 ~~~~-------~~------~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 310 AFSP-------DG------QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG------QTIASASDDKTVKL 370 (577)
T ss_dssp EECT-------TS------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS------SEEEEEETTSEEEE
T ss_pred EECC-------CC------CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC------CEEEEEeCCCEEEE
Confidence 9999 88 79999999999999998766544333333455667787776 45677778888999
Q ss_pred eecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCceEeeecccc
Q 008939 470 RDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 470 ~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
|+. ..+.+..+.+|...|++++|+|++ |++++.|+.|++|+..+... ....|...+. +++||+++|+++...+.
T Consensus 371 ~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 371 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp EET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 995 567788899999999999999984 99999999999999766542 3346777776 78999999999977654
Q ss_pred c
Q 008939 545 S 545 (548)
Q Consensus 545 ~ 545 (548)
+
T Consensus 450 v 450 (577)
T 2ymu_A 450 V 450 (577)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=328.70 Aligned_cols=289 Identities=11% Similarity=0.146 Sum_probs=250.0
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++.+|++++.| +|+|||..+.. ....+..+...+.+++|+|+ +..|++|+.|+.|.+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~~~~v~~~~~sp~---g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--KEHAVTMPCTWVMACAYAPS---GCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCEEEECTT---SSEEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--cceEEecCCCCEEEEEECCC---CCEEEEeeCCCCEEEE
Confidence 456899999999999999999999988 99999998754 77788888889999999999 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++............... ..|...|.+++|+|++. .|++++.|++|++||+++
T Consensus 134 ~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~--------------------- 185 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSV------AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVES--------------------- 185 (354)
T ss_dssp ECCCCTTCCSGGGCEEE------EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT---------------------
T ss_pred EEeccccccccccceee------eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC---------------------
Confidence 98652111111111111 13889999999999998 899999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
...+..+..|...|.+++|+| ++++|++++.|+.|++||+++++++..+..|...|.+++|+|++++|++|+.
T Consensus 186 -----~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 186 -----GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp -----CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -----CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 345778889999999999988 5789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
|+.|++||++..+.+..+.. +...+.+++|+| +| .+|++++.|+.|++||+.+++.+..
T Consensus 261 D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-------~g------~~l~~g~~d~~i~vwd~~~~~~~~~------ 321 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYSKESIIFGASSVDFSL-------SG------RLLFAGYNDYTINVWDVLKGSRVSI------ 321 (354)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTCSEEEE------
T ss_pred CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-------CC------CEEEEEECCCcEEEEECCCCceEEE------
Confidence 99999999999887776654 345789999999 98 7999999999999999988765432
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
+.+|...|++++|+|++ |++++.|++|+||+
T Consensus 322 -----------------------------------------l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 -----------------------------------------LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------------------------------EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 34689999999999984 99999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=321.69 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=243.9
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++.++++++.| .|+|||++++. .+..+..+...+.+++|+|+ +++|++|+.|+.|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTETPVRAGKFIAR---KNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG---GTEEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCC---CCEEEEECCCCEEEEE
Confidence 356799999999999999999999888 99999999854 88888889999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+++ ++.+.... .|...|++++|+|++. +|++|+.|++|++||++..
T Consensus 83 d~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~-------------------- 129 (304)
T 2ynn_A 83 NYNT-----GEKVVDFE-------AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN-------------------- 129 (304)
T ss_dssp ETTT-----CCEEEEEE-------CCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGT--------------------
T ss_pred ECCC-----CcEEEEEe-------CCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCC--------------------
Confidence 9876 22222211 3889999999999999 9999999999999999752
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEcc--CCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSM--DGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~sp--dg~~l~sg 359 (548)
......+..|...|.+++|+| ++.+|++++.|+.|++||+++......+. .|...+..+.|+| ++++|++|
T Consensus 130 -----~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 130 -----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp -----TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred -----cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 123456778899999999999 68899999999999999998776655544 4567899999987 77899999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.|+.|++||+++++++..+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+.
T Consensus 205 s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-------~~------~~l~s~s~Dg~i~iWd~~~~~~~~~~~---- 267 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-------TL------PIIISGSEDGTLKIWNSSTYKVEKTLN---- 267 (304)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred cCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-------CC------CEEEEEcCCCeEEEEECCCCceeeecc----
Confidence 9999999999999999999999999999999999 88 699999999999999999888765443
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe----EEEEECCCeEEEEeCCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES----VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~----l~t~s~Dg~I~iW~~~~ 514 (548)
.|...+.+++|+|+. +++++ |..+.+|++..
T Consensus 268 -------------------------------------------~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 268 -------------------------------------------VGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp -------------------------------------------CSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred -------------------------------------------CCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 467889999999963 55555 55577787754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=338.68 Aligned_cols=301 Identities=15% Similarity=0.228 Sum_probs=252.4
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
-.+.+|.+.|.+++|+|++.+|++++.| +|+|||+.++. .+..+..|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~---g~~las~~~d~~v~i 134 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPN---GQSVACGGLDSACSI 134 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTT---SSEEEECCSSSCCEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEEecCCCCEEEEEECCC---CCEEEEeeCCCcEEE
Confidence 3467899999999999999999999988 99999998854 78888889999999999999 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+.......... ........|...|.++.|.|++...|++|+.|++|++||+.+..
T Consensus 135 w~~~~~~~~~~~~-----~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~------------------ 191 (380)
T 3iz6_a 135 FNLSSQADRDGNM-----PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ------------------ 191 (380)
T ss_dssp EECCCCSSCCCSS-----TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC------------------
T ss_pred EECCCCccccCCc-----cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc------------------
Confidence 9997532111110 01112235889999999999876689999999999999998631
Q ss_pred cCCCCCCCCeeEe-----eecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCE
Q 008939 283 HPRYSKSNPIARW-----HICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 283 ~~~~~~~~~~~~~-----~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~ 355 (548)
.+..+ .+|...|.+++|++ ++++|++++.|+.|++||++ ..+.+..+.+|.+.|.+++|+|++++
T Consensus 192 --------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 192 --------RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp --------EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE
T ss_pred --------EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe
Confidence 12222 45778999999987 88999999999999999998 45777888999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEeccCCC-------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGEGHN-------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
|++|+.|+.|++||+++++++..+..+. ..|++++|+| +| .+|++++.|+.|++||+..+
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-------SG------RLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-------SS------SEEEEECTTSCEEEEETTTC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-------CC------CEEEEEECCCCEEEEECCCC
Confidence 9999999999999999999888776443 3589999999 98 79999999999999999988
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCe
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH 506 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~ 506 (548)
+.+..+.. ...+|...|++++|+|++ |++|+.|+.
T Consensus 331 ~~~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 331 EMVLNLGT-------------------------------------------LQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CEEEEECC-------------------------------------------SCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred ceEEEEec-------------------------------------------ccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 87655432 113689999999999984 999999999
Q ss_pred EEEEeCCCCC
Q 008939 507 IKIWMRPGVA 516 (548)
Q Consensus 507 I~iW~~~~~~ 516 (548)
|+||++.+..
T Consensus 368 i~iW~~~~~~ 377 (380)
T 3iz6_a 368 LKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSSS
T ss_pred EEEEecCCCc
Confidence 9999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=331.49 Aligned_cols=291 Identities=13% Similarity=0.193 Sum_probs=233.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecC------C-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVG------D-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~------d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
..|...|.+++|+|||++|++++. | .+++|+..++.. ........+...|.+++|+|+ + .+++++.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~-~~l~~s~d 114 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---K-GILVASDS 114 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---T-EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---C-CEEEEECC
Confidence 469999999999999999999886 4 688888776432 123344457788999999997 4 46778999
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.|++||+.+........ +. ...|...|++++|+|++. +|++++.|+.|++||+++
T Consensus 115 g~v~lWd~~~~~~~~~~~------~~--~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~--------------- 170 (357)
T 4g56_B 115 GAVELWEILEKESLLVNK------FA--KYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQ--------------- 170 (357)
T ss_dssp SCEEEC--------CCCC------EE--ECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT---------------
T ss_pred CEEEEeeccccceeEEEe------ec--cCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCC---------------
Confidence 999999998631111111 11 113789999999999999 999999999999999986
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCC-
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDG- 353 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg- 353 (548)
...+..+..|...|++++|++++. ++++++.|+.|++||+++++.+..+ ..+...+.+++|+|++
T Consensus 171 -----------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 171 -----------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp -----------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred -----------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 245677888999999999999874 7899999999999999988876554 3466789999999975
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
.+|++|+.|+.|++||+++++++..+.+|...|++++|+| ++. ++|++++.|+.|+|||+++++++..
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp-------~~~-----~~lasgs~D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY-------HSS-----PFLASISEDCTVAVLDADFSEVFRD 307 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECS-------SSS-----CCEEEEETTSCEEEECTTSCEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcC-------CCC-----CEEEEEeCCCEEEEEECCCCcEeEE
Confidence 6899999999999999999999999999999999999999 762 4799999999999999998876532
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC-C--eEEEEECCCeEEEE
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ-E--SVLTVCREGHIKIW 510 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp-d--~l~t~s~Dg~I~iW 510 (548)
.+|.+.|++|+|+| + .|+|++.||+|++|
T Consensus 308 ------------------------------------------------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 308 ------------------------------------------------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred ------------------------------------------------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 25889999999998 4 49999999999999
Q ss_pred eCCCCC
Q 008939 511 MRPGVA 516 (548)
Q Consensus 511 ~~~~~~ 516 (548)
+++...
T Consensus 340 ~~~~~~ 345 (357)
T 4g56_B 340 HLPSEG 345 (357)
T ss_dssp ECC---
T ss_pred ECCCCC
Confidence 997643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=324.92 Aligned_cols=303 Identities=13% Similarity=0.161 Sum_probs=240.1
Q ss_pred cCCCCC-CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSST-SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~-~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+.+|.. .+..++|+|+|++|++++.| .|+|||++.+....... ...|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTCI 87 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC---CCEEEEEECCCcEEE
Confidence 346766 89999999999999999888 99999998743111112 2457889999999998 889999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+..... ...... ..|...|++++|+|++. +|++++.|+.|++||++....
T Consensus 88 w~~~~~~~----~~~~~~------~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~----------------- 139 (345)
T 3fm0_A 88 WKKNQDDF----ECVTTL------EGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDE----------------- 139 (345)
T ss_dssp EEECCC-E----EEEEEE------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSC-----------------
T ss_pred EEccCCCe----EEEEEc------cCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCC-----------------
Confidence 99875210 111111 24889999999999998 999999999999999975211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
...+..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|++++|++|+
T Consensus 140 ------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 140 ------YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp ------EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ------eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 12345677888999999999999999999999999999998875 4467889999999999999999999999
Q ss_pred CCCeEEEEECCC---------------ceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 361 EDDLVQVWSMED---------------RKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 361 ~dg~I~vwd~~~---------------~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
.|+.|+|||... .+++..+.+ |...|.+++|+| ++ ..|++++.|+.|++||
T Consensus 214 ~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------~~------~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-------LT------GALATACGDDAIRVFQ 280 (345)
T ss_dssp TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-------TT------CCEEEEETTSCEEEEE
T ss_pred CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-------CC------CEEEEEeCCCeEEEEE
Confidence 999999999632 134555555 899999999999 88 6899999999999999
Q ss_pred CCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEE
Q 008939 425 LEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTV 501 (548)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~ 501 (548)
.......... .+ ......+.+|...|++|+|+|+ .|+++
T Consensus 281 ~~~~~~~~~~---------~~-----------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 281 EDPNSDPQQP---------TF-----------------------------SLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp ECTTSCTTSC---------CE-----------------------------EEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eCCCCCccee---------eE-----------------------------EEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 8754311000 00 0011223579999999999996 48999
Q ss_pred ECCCeEEEEeCCCCC
Q 008939 502 CREGHIKIWMRPGVA 516 (548)
Q Consensus 502 s~Dg~I~iW~~~~~~ 516 (548)
+.||+|++|++...+
T Consensus 323 s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPE 337 (345)
T ss_dssp ETTSCEEEEEECC--
T ss_pred CCCCcEEEEEecCCC
Confidence 999999999987755
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=320.28 Aligned_cols=297 Identities=15% Similarity=0.180 Sum_probs=231.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEE-ec-CCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSI-HF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~-~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
+.+|.+.|.+++|+++ +|++++.| .|+|||+..+....+..+ .. |...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~D~~v~i 84 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH---TSLLAAGSFDSTVSI 84 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC---CCEEEEEeCCCcEEE
Confidence 4579999999999987 88888877 999999987543345555 33 7889999999998 889999999999999
Q ss_pred EEeeecccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||++..... ........ ...|...|++++|+|++. +|++|+.|+.|++||++..+.
T Consensus 85 w~~~~~~~~~~~~~~~~~------~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~---------------- 141 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAI------IEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE---------------- 141 (330)
T ss_dssp EEC-------CCCEEEEE------EC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC----------------
T ss_pred EEcccCcCccccceeEEE------EcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC----------------
Confidence 998642110 00111111 124889999999999998 999999999999999964211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC--eEEEeeeecCCceEEEEEccC--CCEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE--QLICGGKSYYGALLCCAWSMD--GKYIL 357 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~l~~spd--g~~l~ 357 (548)
....+..+..|...|.+++|+|++++|++++.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|+
T Consensus 142 ------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 142 ------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp ------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 01345667889999999999999999999999999999999876 677888999999999999998 67899
Q ss_pred EEeCCCeEEEEECCCc--------eeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 358 TGGEDDLVQVWSMEDR--------KVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~--------~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+|+.|+.|++||++.+ .+...+.+ |...|.+++|++ ++ +|++++.|+.|++||..++
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------~~-------~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-------NG-------LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-------TS-------CEEEEETTSCEEEEEEETT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-------CC-------EEEEEeCCCEEEEEEcCCC
Confidence 9999999999999764 45556665 999999999997 66 7999999999999998766
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC-CeeEEEEeC--C--eEEEEEC
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE-PLSGLIFTQ--E--SVLTVCR 503 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~-~V~~l~fsp--d--~l~t~s~ 503 (548)
+..... ....+|.. .|++++|+| + .|++++.
T Consensus 282 ~~~~~~--------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 282 EWKVFA--------------------------------------------KRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEEE--------------------------------------------EESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred ceEEEe--------------------------------------------ccccccccceEEEEEEecCCCceEEEEecC
Confidence 421110 01135776 899999998 4 3999999
Q ss_pred CCeEEEEeCCC
Q 008939 504 EGHIKIWMRPG 514 (548)
Q Consensus 504 Dg~I~iW~~~~ 514 (548)
||+|+||++..
T Consensus 318 Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 DGIVNFWSLEK 328 (330)
T ss_dssp TSEEEEEEC--
T ss_pred CCcEEEEEecc
Confidence 99999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=315.97 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=246.0
Q ss_pred ccCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
.+.+|.+.|.+++|+|++ .++++++.| +|++|++..... .++..+..|...+.+++|+|+ +.+|++|+.|+.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~D~~ 88 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD---GAYALSASWDKT 88 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC---CCEEEEEeCCCE
Confidence 456899999999999965 789898888 999999875321 246778889999999999998 889999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||+++. +.+.. . ..|...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 89 v~~wd~~~~-----~~~~~-~------~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~----------------- 138 (319)
T 3frx_A 89 LRLWDVATG-----ETYQR-F------VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG----------------- 138 (319)
T ss_dssp EEEEETTTT-----EEEEE-E------ECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-----------------
T ss_pred EEEEECCCC-----CeeEE-E------ccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-----------------
Confidence 999999762 22211 1 13889999999999999 999999999999999863
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCC------CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTD------GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~------g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
..+..+..|...|.+++|+|. +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++
T Consensus 139 ----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 139 ----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp ----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred ----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 235667788899999999985 4489999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
++|++|+.|+.|++||+++++++..+.. ...|.+++|+| ++ .+|++++. ..+++|++.....+..
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp-------~~------~~la~~~~-~~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSP-------NR------YWLAAATA-TGIKVFSLDPQYLVDD 273 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECS-------SS------SEEEEEET-TEEEEEEETTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcC-------CC------CEEEEEcC-CCcEEEEeCcCeeeec
Confidence 9999999999999999999999988884 56899999999 88 67776664 5699999998776655
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
+..... .....|...+.+++|+||+ |++++.||.|+|||
T Consensus 274 ~~~~~~---------------------------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 274 LRPEFA---------------------------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp ECCCCT---------------------------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCcccc---------------------------------------ccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 543100 0112467789999999984 99999999999999
Q ss_pred CCC
Q 008939 512 RPG 514 (548)
Q Consensus 512 ~~~ 514 (548)
+.+
T Consensus 315 ~~t 317 (319)
T 3frx_A 315 VMT 317 (319)
T ss_dssp EEE
T ss_pred Eee
Confidence 864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=317.34 Aligned_cols=280 Identities=15% Similarity=0.193 Sum_probs=237.4
Q ss_pred EecCCCCceEEEecCCCC-CCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 169 IHFSNSNPVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
...|.+.|.+++|+|+.. ++.+|++|+.|+.|++||++.. .... .+. ...|...|.+++|+|++. +++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~------~~~~--~~~--l~gh~~~v~~~~~~~~~~-~l~ 96 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE------RLDL--QWS--LEGHQLGVVSVDISHTLP-IAA 96 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT------EEEE--EEE--ECCCSSCEEEEEECSSSS-EEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC------Ceee--eee--eccCCCCEEEEEECCCCC-EEE
Confidence 345888999999998643 4678999999999999998752 1110 011 124899999999999998 999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|+.|++||+... ..+..+..|...+.+++|+|++++|++++.|+.|++||
T Consensus 97 s~s~D~~i~lWd~~~~--------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENG--------------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp EEETTSEEEEEETTTT--------------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred EEeCCCcEEEEECCCC--------------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 9999999999999862 34556677778899999999999999999999999999
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+++++....+..|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| ++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-------d~----- 218 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-------DS----- 218 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-------TS-----
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-------CC-----
Confidence 999999888999999999999999999999999999999999999999999999999999999999 98
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++++.. +.+|...
T Consensus 219 -~~l~s~s~dg~i~iwd~~~~~~~~~-----------------------------------------------~~~h~~~ 250 (321)
T 3ow8_A 219 -QLLVTASDDGYIKIYDVQHANLAGT-----------------------------------------------LSGHASW 250 (321)
T ss_dssp -CEEEEECTTSCEEEEETTTCCEEEE-----------------------------------------------ECCCSSC
T ss_pred -CEEEEEcCCCeEEEEECCCcceeEE-----------------------------------------------EcCCCCc
Confidence 7999999999999999987765433 3468999
Q ss_pred eeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|+|+ .|++++.|++|++||+..... ....|...|. +++|++++|+++...|.+
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999997 499999999999999987663 3346777777 788999999999887654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=327.11 Aligned_cols=284 Identities=11% Similarity=0.139 Sum_probs=243.6
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|++++|+|+ +.+|++|+.||.|++||+.+. +... .. ..|...|++++|+|++. +
T Consensus 101 ~~~l~gh~~~V~~~~~~p~---~~~l~s~s~Dg~i~vwd~~~~-----~~~~-~l------~~h~~~V~~v~~~~~~~-~ 164 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV---FSVMVSASEDATIKVWDYETG-----DFER-TL------KGHTDSVQDISFDHSGK-L 164 (410)
T ss_dssp SCEEECCSSCEEEEEECSS---SSEEEEEESSSCEEEEETTTC-----CCCE-EE------CCCSSCEEEEEECTTSS-E
T ss_pred eEeecccCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC-----cEEE-EE------eccCCcEEEEEEcCCCC-E
Confidence 4567789999999999998 789999999999999998762 2111 11 24889999999999998 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++|+.|+.|++||+.. ...+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 165 l~sgs~D~~i~iwd~~~--------------------------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~ 218 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQG--------------------------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218 (410)
T ss_dssp EEEEETTSCCCEEETTS--------------------------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEEEeCCCeEEEEeCCC--------------------------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 99999999999999975 2346667788999999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcc
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~ 405 (548)
||+++++++..+.+|...|.++.|+|++++|++|+.|+.|++||++++++...+.+|...|.+++|+| ++...
T Consensus 219 wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~~ 291 (410)
T 1vyh_C 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP-------ESSYS 291 (410)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC-------SCGGG
T ss_pred EECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC-------ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 42100
Q ss_pred --------------ceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 406 --------------TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 406 --------------~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
....+|++++.|+.|++||+++++++..
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-------------------------------------- 333 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-------------------------------------- 333 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------------------------------------
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------------------------------------
Confidence 0015899999999999999998876543
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+.+|...|++++|+|++ |++++.||.|++||+..... ....|...|. +++|++++|+++...|.+
T Consensus 334 ---------~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 334 ---------LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp ---------EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred ---------EECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 34688999999999974 99999999999999977653 3346777776 788999999999887654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=322.85 Aligned_cols=282 Identities=17% Similarity=0.284 Sum_probs=234.4
Q ss_pred CCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC------------------CCceEEEecCCCCCCc
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN------------------SNPVCHAFDQDAKDGH 189 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~------------------~~~~~~~~~p~~~~~~ 189 (548)
.|...|.+++|+|+|++|+++.++.++||++.++. .+..+..+. ..+.+++|+|+ +.
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---GK 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTT---SS
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCC--EEEEecCccccccccccccccccCCCceeEEEEEECCC---CC
Confidence 58999999999999999999887799999998754 555554332 13889999998 88
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
+|++|+.||.|++||+++. + ..... ..|...|++++|+|++. +|++++.|+.|++||+++..
T Consensus 137 ~l~s~~~d~~i~iwd~~~~-----~-~~~~~------~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~----- 198 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENR-----K-IVMIL------QGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ----- 198 (393)
T ss_dssp EEEEEETTSCEEEEETTTT-----E-EEEEE------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-----
T ss_pred EEEEEcCCCeEEEEECCCC-----c-EEEEE------ccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCe-----
Confidence 9999999999999998761 2 22111 14889999999999999 99999999999999998621
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEee-------eecC
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGG-------KSYY 341 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~~ 341 (548)
....+ .+...+.+++|+| ++++|++++.|+.|++||+++++++..+ .+|.
T Consensus 199 ---------------------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 199 ---------------------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp ---------------------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred ---------------------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence 12222 2346799999999 8999999999999999999999887666 5788
Q ss_pred CceEEEEEccCCCEEEEEeCCCeEEEEECCCc------------eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~------------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
..|.+++|+|++++|++|+.|+.|++||+++. .+...+.+|...|.+++|+| ++ .
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~------~ 323 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-------ND------E 323 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-------GG------C
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-------CC------C
Confidence 99999999999999999999999999999753 34567789999999999999 88 7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
+|++++.|+.|++||+++++++. .+.+|...|.
T Consensus 324 ~l~sgs~D~~v~iwd~~~~~~~~-----------------------------------------------~l~~h~~~v~ 356 (393)
T 1erj_A 324 YILSGSKDRGVLFWDKKSGNPLL-----------------------------------------------MLQGHRNSVI 356 (393)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE-----------------------------------------------EEECCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEE-----------------------------------------------EECCCCCCEE
Confidence 99999999999999998877554 3446899999
Q ss_pred EEEEeC------C--eEEEEECCCeEEEEeCCC
Q 008939 490 GLIFTQ------E--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 490 ~l~fsp------d--~l~t~s~Dg~I~iW~~~~ 514 (548)
+++|++ + .|++|+.||+|+||++..
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999986 3 499999999999999754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=308.67 Aligned_cols=282 Identities=17% Similarity=0.214 Sum_probs=234.9
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+..+.+..|...|.+++|+|+ +.+|++++.||.|++||+++. +.+. ... .|...|.+++|+|+++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~---~~~l~s~~~dg~v~lWd~~~~-----~~~~-~~~------~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT---EPWVLTTLYSGRVELWNYETQ-----VEVR-SIQ------VTETPVRAGKFIARKN 68 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS---SSEEEEEETTSEEEEEETTTT-----EEEE-EEE------CCSSCEEEEEEEGGGT
T ss_pred eeEEeecCCCCceEEEEECCC---CCEEEEEcCCCcEEEEECCCC-----ceeE-Eee------ccCCcEEEEEEeCCCC
Confidence 456778889999999999999 889999999999999998762 2221 111 3788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++|+.|+.|++||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 69 -~l~s~s~d~~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 121 (304)
T 2ynn_A 69 -WIIVGSDDFRIRVFNYNT--------------------------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (304)
T ss_dssp -EEEEEETTSEEEEEETTT--------------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -EEEEECCCCEEEEEECCC--------------------------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeE
Confidence 999999999999999986 24577788999999999999999999999999999
Q ss_pred EEEeCCCC-eEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCC
Q 008939 324 RVFDYSKE-QLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 324 ~vwd~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~ 400 (548)
++||++++ .+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+++......+. +|...|..+.|+| .+
T Consensus 122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~ 196 (304)
T 2ynn_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP-----LP 196 (304)
T ss_dssp EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC-----ST
T ss_pred EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE-----cC
Confidence 99999877 55677889999999999999 67899999999999999998876655544 5778999999986 11
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
++ .+|++++.|+.|++||+++++++..+
T Consensus 197 ~~------~~l~s~s~D~~i~iWd~~~~~~~~~~---------------------------------------------- 224 (304)
T 2ynn_A 197 DK------PYMITASDDLTIKIWDYQTKSCVATL---------------------------------------------- 224 (304)
T ss_dssp TC------CEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------------
T ss_pred CC------CEEEEEcCCCeEEEEeCCCCccceee----------------------------------------------
Confidence 44 68999999999999999988766543
Q ss_pred eecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCCCC--ceEeeeccccc
Q 008939 481 HRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSKDK--PLLSSKVVTSS 545 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d~~--~l~s~~~~g~~ 545 (548)
.+|...|..++|+|+. |++++.||+|++||+.+.+.. ...+.+.+. +++|+++ +|+++...|.+
T Consensus 225 -~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 225 -EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (304)
T ss_dssp -ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEE
T ss_pred -CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceE
Confidence 4689999999999974 999999999999999876632 234556665 6678775 47888766543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=308.47 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=244.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.....+|...|.+++|+|+++++++++.| .|+||++.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD---SNLLVSASDDKTLK 90 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCC---CCEEEEECCCCEEE
Confidence 44567899999999999999999998887 99999998754 77888889999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||+++. +.+. ... .|...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 91 vwd~~~~-----~~~~-~~~------~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~------------------- 138 (312)
T 4ery_A 91 IWDVSSG-----KCLK-TLK------GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKT------------------- 138 (312)
T ss_dssp EEETTTC-----CEEE-EEE------CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT-------------------
T ss_pred EEECCCC-----cEEE-EEc------CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-------------------
Confidence 9998762 2221 111 3788999999999998 999999999999999986
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs 360 (548)
...+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++
T Consensus 139 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 139 -------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred -------CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 23456677788999999999999999999999999999999988876654 4567899999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEE--EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSG--VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~--v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.|+.|++||+++++++..+.+|...+.. ..|.+ .++ .+|++++.|+.|++||+.+++++..
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~l~sg~~dg~i~vwd~~~~~~~~~----- 274 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV------TGG------KWIVSGSEDNLVYIWNLQTKEIVQK----- 274 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC------SSS------CEEEECCTTSCEEEEETTTCCEEEE-----
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe------CCC------cEEEEECCCCEEEEEECCCchhhhh-----
Confidence 9999999999999999999888765433 33443 055 6899999999999999998776543
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE--CCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC--REGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s--~Dg~I~iW~~~ 513 (548)
+.+|.+.|.+++|+|+. |++++ .|++|++|+..
T Consensus 275 ------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 ------------------------------------------LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ------------------------------------------ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ------------------------------------------hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 34688999999999974 78887 69999999864
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=311.91 Aligned_cols=285 Identities=13% Similarity=0.187 Sum_probs=242.6
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+....+..|...|.+++|+|+ +.+|++|+.||.|++||+.+ .+.+.. .. .|...|.+++|+|++.
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d---~~~l~s~s~Dg~v~iWd~~~-----~~~~~~-~~------~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTD---SRLLLSASQDGKLIIWDSYT-----TNKVHA-IP------LRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEEEEETTT-----CCEEEE-EE------CSSSCEEEEEECTTSS
T ss_pred hhheeecCCCCceEEEEECCC---CCEEEEEeCCCcEEEEECCC-----CCcceE-ee------cCCccEEEEEECCCCC
Confidence 356677889999999999998 88999999999999999875 222221 11 3788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.|++|++..... .......+.+|.+.|.++.|++++. |++++.|+.|
T Consensus 111 -~l~s~~~d~~v~iw~~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i 166 (340)
T 1got_B 111 -YVACGGLDNICSIYNLKTREG----------------------NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166 (340)
T ss_dssp -EEEEEETTCEEEEEETTTCSB----------------------SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCE
T ss_pred -EEEEEeCCCeEEEEECccCCC----------------------cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcE
Confidence 999999999999999875211 0123456778999999999998875 8899999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
++||+++++.+..+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| ++
T Consensus 167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-------~~- 238 (340)
T 1got_B 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-------NG- 238 (340)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-------TS-
T ss_pred EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||+++++.+..+.. ..
T Consensus 239 -----~~l~s~s~d~~v~iwd~~~~~~~~~~~~---------------------------------------------~~ 268 (340)
T 1got_B 239 -----NAFATGSDDATCRLFDLRADQELMTYSH---------------------------------------------DN 268 (340)
T ss_dssp -----SEEEEEETTSCEEEEETTTTEEEEEECC---------------------------------------------TT
T ss_pred -----CEEEEEcCCCcEEEEECCCCcEEEEEcc---------------------------------------------CC
Confidence 7999999999999999998876654432 12
Q ss_pred CCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+...|++++|+|++ |++++.|+.|++||+..... ....|...|. +++||+++|+++...|.+
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 34579999999974 99999999999999876653 3347777776 788999999999887654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=312.37 Aligned_cols=300 Identities=17% Similarity=0.184 Sum_probs=234.2
Q ss_pred ccCCCCCCceeEEe-----CC-CCCEEEEecCC-eEEEEEccCCCC-----CCeEEEecCCCCceEEEecCCCCCCceEE
Q 008939 125 GASSSSTSMTNTNF-----DG-KGTYIIFNVGD-AIFISDLNSQDK-----DPIKSIHFSNSNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 125 ~~~~h~~~v~~~~~-----~~-~g~~l~~~~~d-~v~vwd~~~~~~-----~~i~~~~~~~~~~~~~~~~p~~~~~~~l~ 192 (548)
.+.+|...|.+++| ++ ++.+|++++.| +|+|||+..... .++..+..|...+.+++|+|+ +.+|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---~~~l~ 92 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---NCFAI 92 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS---TTEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC---CCEEE
Confidence 45689999999999 76 89999999988 999999976431 245667788899999999998 78999
Q ss_pred EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 193 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 193 ~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
+|+.|+.|++||+++ ++.+.. . ..|...|++++|+|++. +|++++.|+.|++||+..... ..
T Consensus 93 s~s~D~~v~lwd~~~-----~~~~~~-~------~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~--~~--- 154 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRT-----GTTYKR-F------VGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECK--FS--- 154 (343)
T ss_dssp EEETTSEEEEEETTS-----SCEEEE-E------ECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEE--EE---
T ss_pred EEcCCCcEEEEECCC-----CcEEEE-E------cCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCce--ee---
Confidence 999999999999986 222211 1 13889999999999999 999999999999999863100 00
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC----------CEEEEEECCCeEEEEeCCCCeEEEeeeecCC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG----------TYLATVGRDGYLRVFDYSKEQLICGGKSYYG 342 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 342 (548)
......|...|.+++|+|++ .+|++++.|+.|++||. ..+....+.+|..
T Consensus 155 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~ 214 (343)
T 2xzm_R 155 -------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES 214 (343)
T ss_dssp -------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS
T ss_pred -------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc
Confidence 00112466889999999986 79999999999999994 5677778899999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.|.+++|+|++++|++|+.|+.|++||+.. ......+. +...|.+++|+| ++ .++ +++.|+.|+
T Consensus 215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-------~~------~~l-a~~~d~~v~ 279 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-------KL------QWV-AVGTDQGVK 279 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-------SS------CEE-EEEESSCEE
T ss_pred cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-------CC------CEE-EEECCCCEE
Confidence 999999999999999999999999999954 33444443 566799999999 88 444 566788999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL 499 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~ 499 (548)
+||+.+++.......... .........+|...|++++|+|++ |+
T Consensus 280 iw~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 280 IFNLMTQSKAPVCTIEAE----------------------------------PITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEESSSCCSCSEEECCCC----------------------------------SGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred EEEeCCCCCCceEEeecC----------------------------------cchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 999987664331111000 000011224688899999999974 99
Q ss_pred EEECCCeEEEEeCCC
Q 008939 500 TVCREGHIKIWMRPG 514 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~ 514 (548)
+|+.||.|++|++.+
T Consensus 326 sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 326 AGFTDGVIRTFSFET 340 (343)
T ss_dssp EEETTSEEEEEEEEE
T ss_pred EecCCceEEEEEEEc
Confidence 999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=308.05 Aligned_cols=288 Identities=18% Similarity=0.220 Sum_probs=242.4
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+....+..|...|.|++|+|+ +.+|++|+.||.|++||..+. +.... .. .|...|.+++|+|++.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d---~~~l~s~s~Dg~v~vWd~~~~-----~~~~~-~~------~~~~~v~~~~~sp~g~ 119 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKD---KRRIVSSSQDGKVIVWDSFTT-----NKEHA-VT------MPCTWVMACAYAPSGC 119 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTC-----CEEEE-EE------CSSSCCCEEEECTTSS
T ss_pred EEEEEecCCCCeEEEEEECCC---CCEEEEEeCCCeEEEEECCCC-----CcceE-Ee------cCCCCEEEEEECCCCC
Confidence 356778889999999999998 789999999999999997652 22211 11 2677899999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.+++|++....... .......+..|...|.+++|+|+++.|++++.|+.|
T Consensus 120 -~lasg~~d~~i~v~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v 178 (354)
T 2pbi_B 120 -AIACGGLDNKCSVYPLTFDKNEN--------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178 (354)
T ss_dssp -EEEEESTTSEEEEEECCCCTTCC--------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred -EEEEeeCCCCEEEEEEecccccc--------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcE
Confidence 99999999999999987532110 012345677899999999999999999999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEcc--CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSM--DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
++||+++++++..+.+|...|.+++|+| ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+| +
T Consensus 179 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-------~ 251 (354)
T 2pbi_B 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-------S 251 (354)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------T
T ss_pred EEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-------C
Confidence 9999999999999999999999999988 568999999999999999999999999999999999999999 8
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ .+|++++.|+.|++||++.++.+..+..
T Consensus 252 ~------~~l~s~s~D~~v~lwd~~~~~~~~~~~~--------------------------------------------- 280 (354)
T 2pbi_B 252 G------DAFASGSDDATCRLYDLRADREVAIYSK--------------------------------------------- 280 (354)
T ss_dssp S------SEEEEEETTSCEEEEETTTTEEEEEECC---------------------------------------------
T ss_pred C------CEEEEEeCCCeEEEEECCCCcEEEEEcC---------------------------------------------
Confidence 8 7999999999999999998876543322
Q ss_pred ecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 482 RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
..+...+++++|+|++ |++++.|+.|++||+..+.. ....|...|. +++||+++|+++...|.+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence 1234568899999974 99999999999999876552 3346777776 789999999999887654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=335.08 Aligned_cols=354 Identities=16% Similarity=0.215 Sum_probs=292.8
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCC--CCCeEEEecCCCC-ceEEEecC--CCCCCceEEEEEcCCcEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD--KDPIKSIHFSNSN-PVCHAFDQ--DAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~--~~~i~~~~~~~~~-~~~~~~~p--~~~~~~~l~~g~~dg~I~ 201 (548)
..|.+.+.+++|+|+|++++++.++.|+|||++++. .+.+..+..|... +.+++|+| + +.+|++++.||.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~---~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG---SQYLCSGDESGKVI 91 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT---CCEEEEEETTSEEE
T ss_pred CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCC---CCEEEEecCCCEEE
Confidence 467888999999999999999997799999999751 0488888889999 99999999 8 78999999999999
Q ss_pred EEEeeecccc--cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccc
Q 008939 202 SVSLRQQLQD--VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 202 iwdl~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
+||+.+.... ......... ..|...|.+++|+|++. +|++++.+ +.|++||..
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~-------------- 150 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEF------QVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSG-------------- 150 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEE------ECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTC--------------
T ss_pred EEeCCCCcccccccccccchh------hcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEECC--------------
Confidence 9999742000 001111111 13788999999999999 88888887 688888732
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEEeeeecCC---ceEEEEEcc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSM 351 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~l~~sp 351 (548)
+.+..+..|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|
T Consensus 151 --------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 151 --------------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp --------------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred --------------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence 24566778889999999999997 899999999999999999999999999999 999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCceeEEec-c---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 352 D-GKYILTGGEDDLVQVWSMEDRKVVAWG-E---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 352 d-g~~l~sgs~dg~I~vwd~~~~~~~~~~-~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ +++|++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++ .+|++++.|+.|++||++
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~------~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--------DS------QKFATVGADATIRVWDVT 282 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--------SS------SEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--------CC------CEEEEEcCCCcEEEEECC
Confidence 9 999999999999999999999999998 6 899999999996 33 589999999999999999
Q ss_pred CCeEEeeeecCC-----CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEE
Q 008939 427 MDEIVVPLRRGP-----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTV 501 (548)
Q Consensus 427 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~ 501 (548)
+++++..+.... ....+.+. ....+..+..++.+++||+...+++..+.+|...|++++| |+ |+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~ 353 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT-------GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-LISG 353 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE-------ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-TEEE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeC-------CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-cEEE
Confidence 999988887642 11222222 2456788888999999999999999999999999999999 99 9999
Q ss_pred ECCCeEEEEeCCCCCccccCCCCcEEEec-CCCCceEeeecccc
Q 008939 502 CREGHIKIWMRPGVAESQSSSSETVLSTS-SKDKPLLSSKVVTS 544 (548)
Q Consensus 502 s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s-~d~~~l~s~~~~g~ 544 (548)
+.||.|++|++. ... ..|...+.++. ++++.|+++...|.
T Consensus 354 ~~dg~i~~w~~~--~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 354 SYDGRIMEWSSS--SMH-QDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEETTTT--EEE-CCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred CCCCeEEEEEch--hhc-CcccCceEEEEECCCcEEEEEeCCCC
Confidence 999999999987 222 56666776333 55677777766543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=359.21 Aligned_cols=367 Identities=16% Similarity=0.190 Sum_probs=295.7
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|.+++|+|+|+++++++.| .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSD---DSYIATCSADKKVK 682 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccCCCCEEEEEEecC---CCEEEEEeCCCeEE
Confidence 45667899999999999999999998887 99999999855 88899999999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+||+.+ ++.+.. .. .|...|.+++|+|++. .++++++.|+.|++||+++
T Consensus 683 vwd~~~-----~~~~~~-~~------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~------------------ 732 (1249)
T 3sfz_A 683 IWDSAT-----GKLVHT-YD------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------------------ 732 (1249)
T ss_dssp EEETTT-----CCEEEE-EE------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS------------------
T ss_pred EEECCC-----CceEEE-Ec------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC------------------
Confidence 999876 222221 11 3789999999999532 3889999999999999986
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-----------------------
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG----------------------- 337 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------- 337 (548)
...+..+..|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 733 --------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 733 --------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp --------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred --------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 2346667788899999999999999999999999999998776543322
Q ss_pred --------------------------------eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 338 --------------------------------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 338 --------------------------------~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.+|...|.+++|+|+++++++++.|+.|++||+.++..+..+.+|...
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 156778999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--------------------------------------
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-------------------------------------- 427 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-------------------------------------- 427 (548)
|.+++|+| +| .+|++++.|+.|++||+..
T Consensus 885 v~~v~~sp-------dg------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 885 VHGVMFSP-------DG------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp EEEEEECT-------TS------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred eEEEEECC-------CC------CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence 99999999 87 6788888888888887532
Q ss_pred -----------------------------------------CeEEeeeec-CCCCCCceecCCCC---ccccC-------
Q 008939 428 -----------------------------------------DEIVVPLRR-GPLGGSPTFSTGSQ---SAHWD------- 455 (548)
Q Consensus 428 -----------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~---~~~~d------- 455 (548)
++.+..+.. ...+..+.|++++. ....|
T Consensus 952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 222222221 13455566666653 11112
Q ss_pred ------------------------CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEE
Q 008939 456 ------------------------NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKI 509 (548)
Q Consensus 456 ------------------------~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~i 509 (548)
..+..+..++.+++||+...+++..+.+|...|++++|+|++ |++++.||.|++
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 223445557788899999999999999999999999999984 999999999999
Q ss_pred EeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 510 WMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 510 W~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
||+..... ....|...+. +++||+++|+++...|.+
T Consensus 1112 wd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp ECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred EECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 99876653 3335666666 789999999999887654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=320.79 Aligned_cols=327 Identities=12% Similarity=0.196 Sum_probs=270.6
Q ss_pred cccCCCCCCceeEEeCCCCC-EEEEecCC-eEEEEEc----cCCCC----CCeEEEec----------CCCCceEEEecC
Q 008939 124 LGASSSSTSMTNTNFDGKGT-YIIFNVGD-AIFISDL----NSQDK----DPIKSIHF----------SNSNPVCHAFDQ 183 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~----~~~~~----~~i~~~~~----------~~~~~~~~~~~p 183 (548)
+....|...|.+++|+|+|. ++++++.| .|+|||+ .++.. .....+.. +...+.+++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 44455678999999999999 99998887 9999999 66431 02334433 456899999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCC
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKD 263 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~ 263 (548)
+ +.+|++++.||.|++||... +.+.... .|...|++++|+|++. +|++++.||.|++||+...
T Consensus 119 ~---~~~l~~~~~dg~i~i~~~~~------~~~~~~~-------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 119 D---GNSIVTGVENGELRLWNKTG------ALLNVLN-------FHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISG 181 (425)
T ss_dssp T---SSEEEEEETTSCEEEEETTS------CEEEEEC-------CCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTT
T ss_pred C---CCEEEEEeCCCeEEEEeCCC------Ceeeecc-------CCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCC
Confidence 8 88999999999999999432 2222111 3789999999999999 9999999999999999762
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC---------------CeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG---------------SINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
. .+..+..+.. .+.+++|+|++ .+++++.|+.|++||+
T Consensus 182 ~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~ 234 (425)
T 1r5m_A 182 T--------------------------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQI 234 (425)
T ss_dssp E--------------------------EEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEET
T ss_pred c--------------------------EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEc
Confidence 1 1222222222 38999999985 5888999999999999
Q ss_pred CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 329 SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 329 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+| ++
T Consensus 235 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------ 301 (425)
T 1r5m_A 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-------DD------ 301 (425)
T ss_dssp TCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-------TT------
T ss_pred CCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-------CC------
Confidence 99998888889999999999999999999999999999999999999999999999999999999 77
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC-----------
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS----------- 476 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~----------- 476 (548)
+|++++.|+.|++||+++++++..+..+ ..+..+.+++++ ..+.++..++.+++||+....
T Consensus 302 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 302 -KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG------QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS------SEEEEEETTSCEEEEECHHHHC----------
T ss_pred -EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC------CEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 7999999999999999999998888753 456677787765 566788889999999998877
Q ss_pred ---------ceEEeecCCC--CeeEEEEeCC--eEEEEECCCeEEEEeCCC
Q 008939 477 ---------PLVAHRVHTE--PLSGLIFTQE--SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 477 ---------~~~~~~~h~~--~V~~l~fspd--~l~t~s~Dg~I~iW~~~~ 514 (548)
++..+.+|.. .|++++|+|+ .|++++.||.|++|++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999977 9999999998 489999999999999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=305.68 Aligned_cols=298 Identities=14% Similarity=0.205 Sum_probs=245.5
Q ss_pred ccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 125 GASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
.+.+|.+.|++++|+|+ +++|++++.| +|+|||+..... .++..+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---g~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---GQFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC---CCEEEEEccccc
Confidence 46789999999999998 6899998888 999999986542 245667778999999999998 889999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++|+.... ....... .+...+..+.+++++. +|++++.|+.+++||+....
T Consensus 110 i~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~--------------- 161 (340)
T 4aow_A 110 LRLWDLTTG-----TTTRRFV-------GHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVC--------------- 161 (340)
T ss_dssp EEEEETTTT-----EEEEEEE-------CCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE---------------
T ss_pred ceEEeeccc-----ceeeeec-------CCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCc---------------
Confidence 999998762 1111111 2567888999999998 89999999999999986521
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
........|...+..++|++++ .++++++.|+.|++||+++++++..+.+|.+.|.+++|+|++++|+
T Consensus 162 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 162 ----------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp ----------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ----------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEE
Confidence 1223345577899999999854 5789999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+|+.|+.|++||+++.+++..+. +...|.++.|+| ++ .+++++.|+.|++||++.+.++..+...
T Consensus 232 s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-------~~-------~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 296 (340)
T 4aow_A 232 SGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSP-------NR-------YWLCAATGPSIKIWDLEGKIIVDELKQE 296 (340)
T ss_dssp EEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECS-------SS-------SEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred EEeCCCeEEEEEeccCceeeeec-CCceEEeeecCC-------CC-------ceeeccCCCEEEEEECCCCeEEEecccc
Confidence 99999999999999999998888 456899999998 77 5677888999999999998887766541
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~ 515 (548)
.......+|...|++++|+|+ .|++|+.||.|+|||+.++
T Consensus 297 --------------------------------------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 297 --------------------------------------VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ---------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred --------------------------------------ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 111233478999999999998 4999999999999998875
Q ss_pred C
Q 008939 516 A 516 (548)
Q Consensus 516 ~ 516 (548)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=307.16 Aligned_cols=325 Identities=11% Similarity=0.107 Sum_probs=267.9
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+...+..++|+|+|++++++..+ .+.+|+..... .......|...+.+++|+|+ +.+|++++ ||.|++||+..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLNHGEVVCAVTISNP---TRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEECCSSCCCEEEECSS---SSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceeccCCCceEEEEEecC---CcEEEEcC-CCeEEEEECCC
Confidence 45677899999999999987655 66666554321 33333458889999999998 77899888 99999999976
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.. ....... +. ...|...|++++|+|+++ +|++++.||.|++||++...
T Consensus 82 ~~--~~~~~~~---~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~----------------------- 130 (337)
T 1gxr_A 82 PG--NKSPVSQ---LD--CLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPT----------------------- 130 (337)
T ss_dssp TT--CCSCSEE---EE--CSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC------------------------
T ss_pred CC--ceeeeec---cc--ccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCC-----------------------
Confidence 21 1111111 11 112788999999999998 99999999999999998621
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
......+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...+.+++|+|++++|++++.|+.|++
T Consensus 131 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 131 -PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 1134556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
||+++++.+..+. |...|.+++|+| ++ .+|++++.|+.|++||+++++..........+..+.+++
T Consensus 210 ~d~~~~~~~~~~~-~~~~v~~~~~s~-------~~------~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 210 WDLREGRQLQQHD-FTSQIFSLGYCP-------TG------EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT
T ss_pred EECCCCceEeeec-CCCceEEEEECC-------CC------CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC
Confidence 9999999888776 888999999999 88 789999999999999999988765544545667778887
Q ss_pred CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 448 GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 448 ~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
++ ..+..+..++.+++|++...+++.. ..|...|.+++|+|+ .|++++.||.|++|++
T Consensus 276 ~~------~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 276 CG------KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TS------SEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC------CEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 75 4567778889999999998887754 458899999999997 4999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=314.93 Aligned_cols=310 Identities=13% Similarity=0.167 Sum_probs=222.2
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc------CCcEEEEEeeecc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQL 209 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~ 209 (548)
+.+.+++.++..++......|++.... + ..|...|.+++|+|+ |.+|++|+. |+.|++|+.....
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~--p----~~H~~~V~~v~fSpD---G~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA--P----ACMEVQIGAVRYRRD---GALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSS---SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCccceEEecCCCccccccCCCCCC--c----ccccCCEEEEEECCC---CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 444455555555444588999986422 2 347788999999999 889999997 6778888876521
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
.. ........ .|...|++++|+|++. +++++.||.|+|||+.+.....
T Consensus 82 ~~-~~~~~~~~-------~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~---------------------- 129 (357)
T 4g56_B 82 PN-ESLCTAGV-------QTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLL---------------------- 129 (357)
T ss_dssp -C-GGGCSEEE-------ECSSCEEEEEEETTTE--EEEEETTSCEEEC--------C----------------------
T ss_pred cc-eeEecccC-------CCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeE----------------------
Confidence 11 11111111 2788899999999975 6778899999999997632110
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVW 368 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vw 368 (548)
........|...|++++|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 11123446889999999999999999999999999999999999999999999999999999985 78999999999999
Q ss_pred ECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 369 SMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 369 d~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
|+++++++..+. .|...|.+++|+| ++. .+|++++.|+.|++||+++++++.
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp-------~~~-----~~la~g~~d~~i~~wd~~~~~~~~-------------- 263 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHP-------EKD-----DTFACGDETGNVSLVNIKNPDSAQ-------------- 263 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECT-------TST-----TEEEEEESSSCEEEEESSCGGGCE--------------
T ss_pred ECCCCceeeeeeeccccccccchhhhh-------ccc-----ceEEEeecccceeEEECCCCcEeE--------------
Confidence 999988766544 5778899999999 642 589999999999999998766443
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCCc-cccCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAE-SQSSS 522 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~~-~~~~~ 522 (548)
.+.+|...|++|+|+|+ .|++++.|++|+|||+..++. ....|
T Consensus 264 ---------------------------------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 264 ---------------------------------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp ---------------------------------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC
T ss_pred ---------------------------------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC
Confidence 34468899999999996 389999999999999987663 34477
Q ss_pred CCcEE--EecC-CCCceEeeeccccc
Q 008939 523 SETVL--STSS-KDKPLLSSKVVTSS 545 (548)
Q Consensus 523 ~~~v~--~~s~-d~~~l~s~~~~g~~ 545 (548)
...|. +|+| |+++|+++...|.+
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence 88887 7788 78899999877654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=320.13 Aligned_cols=328 Identities=13% Similarity=0.179 Sum_probs=257.1
Q ss_pred CCCceeEEeCCCCC-EEEEe----------cCC-eEEEEEccCCCCC-CeEEEecCCCCceEEEecCCCCCCceEEEEEc
Q 008939 130 STSMTNTNFDGKGT-YIIFN----------VGD-AIFISDLNSQDKD-PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 130 ~~~v~~~~~~~~g~-~l~~~----------~~d-~v~vwd~~~~~~~-~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
...+.+++|+|+|+ +++++ +.| .|+|||+.++... ++..+ .+...+.+++|+|+ +.+|++++.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHN---NKIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSS---SSCEEEEES
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCC---CCeEEEEcc
Confidence 34677899999998 88887 566 9999999875422 34333 36789999999998 789999999
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
||.|++||+.... .+....... ..|...|++++|+|++..+|++++.||.|++||+.........+..
T Consensus 88 dg~v~vw~~~~~~--~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---- 155 (416)
T 2pm9_A 88 NGSLELYSTNEAN--NAINSMARF------SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---- 155 (416)
T ss_dssp SSCEEEECCSSTT--SCCCEEEEC------CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC----
T ss_pred CCeEEEeeccccc--ccccchhhc------cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc----
Confidence 9999999987621 111111111 2388999999999984339999999999999999864311110000
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec------CCceEEEEE
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY------YGALLCCAW 349 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~v~~l~~ 349 (548)
..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|
T Consensus 156 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 156 -------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp -------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred -------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 011223457789999999998 789999999999999999999998888776 788999999
Q ss_pred ccCC-CEEEEEeCCC---eEEEEECCCc-eeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 350 SMDG-KYILTGGEDD---LVQVWSMEDR-KVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 350 spdg-~~l~sgs~dg---~I~vwd~~~~-~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
+|++ .+|++++.|+ .|++||++++ +++..+. +|...|.+++|+|. ++ .+|++++.|+.|++|
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~------~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ------DE------HLLLSSGRDNTVLLW 290 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS------CS------SCEEEEESSSEEEEE
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC------CC------CeEEEEeCCCCEEEe
Confidence 9997 6899999998 9999999986 6777888 89999999999971 44 689999999999999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC---eEEE
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE---SVLT 500 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd---~l~t 500 (548)
|+++++++..+ .+|...|++++|+|+ .|++
T Consensus 291 d~~~~~~~~~~-----------------------------------------------~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 291 NPESAEQLSQF-----------------------------------------------PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp CSSSCCEEEEE-----------------------------------------------ECSSSCCCCEEECTTCTTEEEE
T ss_pred eCCCCccceee-----------------------------------------------cCCCCceEEEEECCCCCCEEEE
Confidence 99987765433 458889999999996 4899
Q ss_pred EECCCeEEEEeCCCCCccccC-------------------------------------CCCcE--EEecCCCCceEeeec
Q 008939 501 VCREGHIKIWMRPGVAESQSS-------------------------------------SSETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~~~~~~-------------------------------------~~~~v--~~~s~d~~~l~s~~~ 541 (548)
++.|+.|++|++......... +...+ .+|+|||++|+++..
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 999999999998776532211 33344 389999999999987
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.|.+
T Consensus 404 d~~v 407 (416)
T 2pm9_A 404 GKGV 407 (416)
T ss_dssp SSCB
T ss_pred CCeE
Confidence 6544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=354.08 Aligned_cols=386 Identities=17% Similarity=0.215 Sum_probs=293.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|.+++|+|+|+++++++.| .|+|||+.++. .+..+..|...+.+++|+|+.. ...+++|+.||.|++||
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSN-HLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSS-CCEEEEEETTSCEEEEE
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCCCCcEEEEEEecCCC-ceEEEEEeCCCeEEEEE
Confidence 45799999999999999999998887 99999999854 8889999999999999999633 66899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC-----------------
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD----------------- 267 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~----------------- 267 (548)
+++. +... .. ..|...|++++|+|++. +|++++.||.|++||+.......
T Consensus 730 ~~~~-----~~~~-~~------~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 730 LNQK-----ECRN-TM------FGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp TTSS-----SEEE-EE------CCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred CCCc-----chhh-ee------cCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 9862 2221 11 13889999999999999 99999999999999997632100
Q ss_pred -----CCcccccccceeeeecCC------CCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE
Q 008939 268 -----SSFPVIKDQTQFSVAHPR------YSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC 335 (548)
Q Consensus 268 -----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~ 335 (548)
.......+...+...... ......+..+. .|...|.+++|+|+++++++++.|+.|++||+.+++.+.
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~ 876 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence 000001111111111000 01112222222 688999999999999999999999999999999999999
Q ss_pred eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC--------------------------------------------
Q 008939 336 GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-------------------------------------------- 371 (548)
Q Consensus 336 ~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-------------------------------------------- 371 (548)
.+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 877 ~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 999999999999999999999999999998888853
Q ss_pred -----------------------------------CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 372 -----------------------------------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 372 -----------------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
+++.+..+.+|...|.+++|+| +| .+|++++.
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-------dg------~~l~s~~~ 1023 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-------DG------KTLISSSE 1023 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-------SS------SCEEEECS
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-------CC------CEEEEEcC
Confidence 2233445567999999999999 88 68999999
Q ss_pred CCeEEEEECCCCeEEeeeecCCCCCCceecCCCC---------cccc--------------------------CCeeeec
Q 008939 417 DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ---------SAHW--------------------------DNVCPVG 461 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--------------------------d~~~~~g 461 (548)
|+.|++||+.+++.+........+..+.+++++. ...| ...+..+
T Consensus 1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 9999999988877654433322222232222211 0000 1235677
Q ss_pred ccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccc-----------cCCCCcEE-
Q 008939 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQ-----------SSSSETVL- 527 (548)
Q Consensus 462 ~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~-----------~~~~~~v~- 527 (548)
..++.+++||+....++..+.+|...|++++|+|++ |++++.||.|++||+.++.... ..|...+.
T Consensus 1104 s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp CCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred cCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 778999999999999999999999999999999984 9999999999999998765322 23455454
Q ss_pred -EecCCCCceEeee
Q 008939 528 -STSSKDKPLLSSK 540 (548)
Q Consensus 528 -~~s~d~~~l~s~~ 540 (548)
+|+||+++|++++
T Consensus 1184 l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAG 1197 (1249)
T ss_dssp EEECTTSSCEEEES
T ss_pred EEECCCCCEEEECC
Confidence 8999999999886
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=305.88 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=234.6
Q ss_pred CeEEEecCCC-CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNS-NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~-~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+..+..|+. .+.+++|+|+ +.+|++|+.|+.|++||+... . ...... ....|...|++++|+|++.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~---g~~las~~~D~~i~iw~~~~~-----~-~~~~~~---~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPA---GTLLASCGGDRRIRIWGTEGD-----S-WICKSV---LSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTT---SSCEEEEETTSCEEEEEEETT-----E-EEEEEE---ECSSCSSCEEEEEECTTSS
T ss_pred EeeeecCCCCCcEEEEEECCC---CCEEEEEcCCCeEEEEEcCCC-----c-ceeeee---eccccCCcEEEEEECCCCC
Confidence 4566667777 8999999999 889999999999999998762 1 110000 0124889999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++|+.|+.|++||+.... ...+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 75 -~l~s~s~D~~v~iw~~~~~~------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v 129 (345)
T 3fm0_A 75 -YLASASFDATTCIWKKNQDD------------------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129 (345)
T ss_dssp -EEEEEETTSCEEEEEECCC-------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -EEEEEECCCcEEEEEccCCC------------------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeE
Confidence 99999999999999987521 12356778899999999999999999999999999
Q ss_pred EEEeCCCC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCC
Q 008939 324 RVFDYSKE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 324 ~vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
++||++++ +++..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+.+|...|.+++|+|
T Consensus 130 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp----- 204 (345)
T 3fm0_A 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP----- 204 (345)
T ss_dssp EEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-----
T ss_pred EEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-----
Confidence 99999865 3466778899999999999999999999999999999998875 4578889999999999999
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCce
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~ 478 (548)
+| .+|++++.|+.|+|||+........+ ... + ..+....+
T Consensus 205 --~g------~~l~s~s~D~~v~iW~~~~~~~~~~~---------~~~--~---------------------~~~~~~~~ 244 (345)
T 3fm0_A 205 --SG------QRLASCSDDRTVRIWRQYLPGNEQGV---------ACS--G---------------------SDPSWKCI 244 (345)
T ss_dssp --TS------SEEEEEETTSCEEEEEEECTTCTTCC---------CCC--------------------------CEEEEE
T ss_pred --CC------CEEEEEeCCCeEEEeccccCCCCccc---------eee--c---------------------cCCcccee
Confidence 98 79999999999999996432211000 000 0 00111223
Q ss_pred EEeec-CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEE--EecCCCC-ceEeeec
Q 008939 479 VAHRV-HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES-----------QSSSSETVL--STSSKDK-PLLSSKV 541 (548)
Q Consensus 479 ~~~~~-h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~--~~s~d~~-~l~s~~~ 541 (548)
..+.+ |...|++++|+|+ .|++++.|+.|++|+....... ...|...|. +|+|++. +|+++..
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 34444 8889999999997 4999999999999997654311 135677777 7889984 8999887
Q ss_pred cccc
Q 008939 542 VTSS 545 (548)
Q Consensus 542 ~g~~ 545 (548)
.|.+
T Consensus 325 Dg~v 328 (345)
T 3fm0_A 325 DGEV 328 (345)
T ss_dssp TSCE
T ss_pred CCcE
Confidence 7654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=301.66 Aligned_cols=294 Identities=14% Similarity=0.144 Sum_probs=221.2
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-----ccc-ceeeeeeeccC
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-----VGK-KLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-----~~~-~~~~~~~~~~~ 225 (548)
..+.|++.... +. .+...+.+++|+|+ |.+|++++ |+.+++||....... ... ......
T Consensus 15 ~~r~w~~~~~~--~~----~~~~~v~~~~fs~d---G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~----- 79 (344)
T 4gqb_B 15 AAREWNLPPNA--PA----CMERQLEAARYRSD---GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV----- 79 (344)
T ss_dssp --------CCS--CS----SCCSEEEEEEECTT---SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE-----
T ss_pred cccccCCCCCC--cc----cccCCEEEEEECCC---CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee-----
Confidence 34677776432 21 24557899999999 77777665 778888875431110 001 011111
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...|++++|+|++ .|++|+.||.|+|||++++... ......+.+|.+.|+++
T Consensus 80 --~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~----------------------~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 80 --QTEAGVADLTWVGER--GILVASDSGAVELWELDENETL----------------------IVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp --EESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSC----------------------EEEEEEEECCSSCEEEE
T ss_pred --ccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCce----------------------eEeeccccCCCCCEEEE
Confidence 156789999999986 6889999999999999863210 00112345789999999
Q ss_pred EECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEEecc--CC
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAWGE--GH 382 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~~~~--~h 382 (548)
+|+|++++|++++.|+.|++||+++++++..+.+|...|.+++|+|++. +|++++.|+.|++||+++++++..+. .|
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 213 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence 9999999999999999999999999999999999999999999999985 78999999999999999998887775 46
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
...+.+++|+| ++. ++|++++.|+.|+|||+++++++.
T Consensus 214 ~~~~~~~~~~p-------~~~-----~~l~sg~~dg~v~~wd~~~~~~~~------------------------------ 251 (344)
T 4gqb_B 214 GYLPTSLAWHP-------QQS-----EVFVFGDENGTVSLVDTKSTSCVL------------------------------ 251 (344)
T ss_dssp CCCEEEEEECS-------SCT-----TEEEEEETTSEEEEEESCC--CCE------------------------------
T ss_pred eccceeeeecC-------CCC-----cceEEeccCCcEEEEECCCCcEEE------------------------------
Confidence 67899999998 542 588999999999999998876543
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCc-
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKP- 535 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~- 535 (548)
.+.+|...|++|+|+|++ |++++.|++|+|||+..++. ...+|...|. +|+|+++.
T Consensus 252 -----------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 252 -----------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp -----------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred -----------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence 345689999999999963 89999999999999987763 3447888887 78899976
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
|+++...|.+
T Consensus 315 las~s~D~~v 324 (344)
T 4gqb_B 315 LTTVGWDHQV 324 (344)
T ss_dssp EEEEETTSCE
T ss_pred EEEEcCCCeE
Confidence 5577666554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=298.71 Aligned_cols=313 Identities=13% Similarity=0.129 Sum_probs=254.5
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+.+.+|...|.+++|+|+++++++++.| .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF---TKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hhhhhhhcCCcEEEEEEcCC---CCEEEEEeCCCeEE
Confidence 45677899999999999999999998877 99999999854 88888889999999999998 88999999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCCCCCCCccccccc
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----GNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
+||+++ ++ ...... +...|.+++|+|++. +|++++.+ +.|++||+....... .+..
T Consensus 100 iwd~~~-----~~-~~~~~~-------~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~---- 160 (369)
T 3zwl_B 100 LWDVSN-----GQ-CVATWK-------SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATH-ELTK---- 160 (369)
T ss_dssp EEETTT-----CC-EEEEEE-------CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTC-CEEE----
T ss_pred EEECCC-----Cc-EEEEee-------cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccce-eecc----
Confidence 999976 22 222222 577899999999999 89999988 999999998643211 1111
Q ss_pred ceeeeecCCCCCCCCeeEeeecCC--CeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEEeeeecCCceEEEEEccCC
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQG--SINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~spdg 353 (548)
....++..+..|.+ .+.+++|+|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++
T Consensus 161 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 161 ----------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ----------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ----------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 01234556666666 999999999999999999999999999998 78888899999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
++|++++.|+.|++||+++++.+..+. +...+..++|+| ++ .++++++.++.+.+|.......
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-------~~------~~l~~~~~~~~~~~~~~~~~~~--- 293 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-------LK------EFIILGGGQEAKDVTTTSANEG--- 293 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-------SS------SEEEEEECCC---------------
T ss_pred CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-------CC------ceEEEeecCCCceEEEEecCCC---
Confidence 999999999999999999999988888 889999999999 88 7899999988665555433211
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
...+++||....+++..+.+|...|++++|+|+ .|++++.||.|++|+
T Consensus 294 ------------------------------~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 294 ------------------------------KFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp -------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ------------------------------cceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 112345666666667777889999999999997 499999999999999
Q ss_pred CCCCC
Q 008939 512 RPGVA 516 (548)
Q Consensus 512 ~~~~~ 516 (548)
+....
T Consensus 344 ~~~~~ 348 (369)
T 3zwl_B 344 FEKSY 348 (369)
T ss_dssp ECHHH
T ss_pred Ccccc
Confidence 87643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=295.77 Aligned_cols=282 Identities=16% Similarity=0.186 Sum_probs=232.0
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|.+++|+|+. +.+|++|+.|+.|++||+.......+..+.. ...|...|++++|+|++. +
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~--~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~s~dg~-~ 79 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQ--PNLLLSASRDKTLISWKLTGDDQKFGVPVRS-------FKGHSHIVQDCTLTADGA-Y 79 (319)
T ss_dssp EEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEEEEEETTEEEEEEEE-------EECCSSCEEEEEECTTSS-E
T ss_pred EEEEccccceEEEEEccCCC--ccEEEEecCCccEEEecCCCCCccccccceE-------EeCCcccEEEEEECCCCC-E
Confidence 44667788999999999972 4689999999999999997532111111111 124899999999999999 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
|++++.|++|++||+.+ .+.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 80 l~s~s~D~~v~~wd~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 80 ALSASWDKTLRLWDVAT--------------------------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp EEEEETTSEEEEEETTT--------------------------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EEEEeCCCEEEEEECCC--------------------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999986 2456778899999999999999999999999999999
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccC------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMD------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spd------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
||++ ++++..+.+|...|.+++|+|. +..|++++.|+.|++||+++.+....+.+|...|.+++|+|
T Consensus 134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp------ 206 (319)
T 3frx_A 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP------ 206 (319)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT------
T ss_pred EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC------
Confidence 9997 5667788899999999999995 44899999999999999999999999999999999999999
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
+| .+|++++.|+.|++||+.+++++..+..
T Consensus 207 -~g------~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------------------- 236 (319)
T 3frx_A 207 -DG------TLIASAGKDGEIMLWNLAAKKAMYTLSA------------------------------------------- 236 (319)
T ss_dssp -TS------SEEEEEETTCEEEEEETTTTEEEEEEEC-------------------------------------------
T ss_pred -CC------CEEEEEeCCCeEEEEECCCCcEEEEecC-------------------------------------------
Confidence 99 7999999999999999999887655432
Q ss_pred EeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc----------cCCCCcEE--EecCCCCceEeeeccccc
Q 008939 480 AHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ----------SSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 480 ~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~----------~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...|.+++|+|++ ++.++.+..|++|++....... ..+...+. +|+||+++|+++...|.+
T Consensus 237 -----~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 237 -----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp -----CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred -----CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceE
Confidence 3579999999985 4444556679999987643111 12233444 899999999999887654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=341.97 Aligned_cols=383 Identities=12% Similarity=0.101 Sum_probs=266.6
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|...|..++|+| |++|++++.| +|+|||++++. .+..+. +...+++++|+|+ +.+|++|+.||.|++||++
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~--~~~~~~-~~~~V~~v~~sp~---g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK--VLTTVF-VPGKITSIDTDAS---LDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS--EEEEEE-CSSCEEEEECCTT---CSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc--EEEEEc-CCCCEEEEEECCC---CCEEEEEcCCCcEEEEECC
Confidence 4678899999999 8888888877 99999999854 777776 5678999999999 8899999999999999997
Q ss_pred ecccccccceeeeeee---c---cCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 207 QQLQDVGKKLVGAHHY---N---KDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
... +.. ... . .....|...|++++|+|++..+|++|+.||.| +||++.. .....+......
T Consensus 129 ~~~------~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~---- 195 (902)
T 2oaj_A 129 RDQ------LSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPP---- 195 (902)
T ss_dssp TTE------EEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCT----
T ss_pred CCc------ccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCC----
Confidence 621 110 000 0 12235889999999999765589999999999 9999863 111111100000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe--e---ee-------------cCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--G---KS-------------YYG 342 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~--~---~~-------------~~~ 342 (548)
...........+..|...|.+++|+|+|++|++++.|+.|++||+++++++.. + .. |..
T Consensus 196 ---g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 272 (902)
T 2oaj_A 196 ---FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAA 272 (902)
T ss_dssp ---TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCC
T ss_pred ---cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccC
Confidence 00000000022345668899999999999999999999999999999887653 2 11 345
Q ss_pred ceEEEEEc----cCC-CEEEEEeCC-------------------------------------------------------
Q 008939 343 ALLCCAWS----MDG-KYILTGGED------------------------------------------------------- 362 (548)
Q Consensus 343 ~v~~l~~s----pdg-~~l~sgs~d------------------------------------------------------- 362 (548)
.|.+++|+ |++ .+|++|+.|
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence 78999995 433 355555443
Q ss_pred ---------------------CeEEEEECCCceeEEe-------ccCCCCCeEEEEEecC----C---------------
Q 008939 363 ---------------------DLVQVWSMEDRKVVAW-------GEGHNSWVSGVAFDSY----W--------------- 395 (548)
Q Consensus 363 ---------------------g~I~vwd~~~~~~~~~-------~~~h~~~V~~v~~~p~----~--------------- 395 (548)
+.|++||+.++..... +..|...|++++|++. |
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~ 432 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK 432 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc
Confidence 3344444433322111 2233455555555320 0
Q ss_pred -----C---CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe--ee----------ecCCCCCCceecCCCCccccC
Q 008939 396 -----S---QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV--PL----------RRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 396 -----~---~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~d 455 (548)
. .-.+|| .+|++++.|++|++||+.+++... .+ .+...+.+++|++++
T Consensus 433 G~~~~v~sv~~spdg------~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg------ 500 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYG------TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET------ 500 (902)
T ss_dssp CSBCCCCCCCCCSEE------EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT------
T ss_pred CCcCCCCcccccccC------cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC------
Confidence 0 000155 799999999999999998875321 11 122456788899887
Q ss_pred CeeeecccCCCCceeecCCC---------------------------------------------CceEEeecCCCCeeE
Q 008939 456 NVCPVGTLQPAPSMRDVPKL---------------------------------------------SPLVAHRVHTEPLSG 490 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~---------------------------------------------~~~~~~~~h~~~V~~ 490 (548)
..++++..++.+++|++... +++..+.+|.+.|++
T Consensus 501 ~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~s 580 (902)
T 2oaj_A 501 LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA 580 (902)
T ss_dssp TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEE
T ss_pred CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEE
Confidence 56778888888899987654 246778899999999
Q ss_pred EEEeCCe-EEEEECCCeEEEEeCCCCCcc-------c-cCCCCcEE--Eec-----CCC---CceEeeeccccc
Q 008939 491 LIFTQES-VLTVCREGHIKIWMRPGVAES-------Q-SSSSETVL--STS-----SKD---KPLLSSKVVTSS 545 (548)
Q Consensus 491 l~fspd~-l~t~s~Dg~I~iW~~~~~~~~-------~-~~~~~~v~--~~s-----~d~---~~l~s~~~~g~~ 545 (548)
|+|+||+ |++|+.|++|+|||+.+.... . ..|...|. +|+ ||| ++|+++...|.+
T Consensus 581 vafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 581 INNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp EEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred EEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 9999996 889999999999999876431 1 16777776 888 885 899999887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=306.36 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=246.8
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.|..+|.+++|+|+++++++++.+ .|+|||+.++..+.+..+..|...+.+++|+|+ +.+|++++.||.|++||++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---CCEEEEEcCCCeEEEEECC
Confidence 478899999999999999998776 999999987433377888889999999999998 8899999999999999997
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ....... ...|...|++++|+|++. +|++++.|+.|++||++......
T Consensus 83 ~~------~~~~~~~----~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~------------------- 132 (372)
T 1k8k_C 83 GR------TWKPTLV----ILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWW------------------- 132 (372)
T ss_dssp TT------EEEEEEE----CCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEE-------------------
T ss_pred CC------eeeeeEE----eecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcce-------------------
Confidence 62 1111110 112688999999999998 99999999999999998632100
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC------------------CCCeEEEeeeecCCceEEEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY------------------SKEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~------------------~~~~~~~~~~~~~~~v~~l~ 348 (548)
........|...|.+++|+|++++|++++.|+.|++||+ ..++.+..+..|...|.+++
T Consensus 133 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 133 ---VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp ---EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred ---eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 001122446789999999999999999999999999995 46788888889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM- 427 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~- 427 (548)
|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+| ++ .+|+++ .|+.|++||+..
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~-~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-------ES------SLVAAG-HDCFPVLFTYDSA 275 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-------TT------EEEEEE-TTSSCEEEEEETT
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-------CC------CEEEEE-eCCeEEEEEccCc
Confidence 999999999999999999999999999999999999999999999 88 666665 999999999988
Q ss_pred -CeEE--eeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee---ecCCCCc------eEEeecCCCCeeEEEEe-
Q 008939 428 -DEIV--VPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR---DVPKLSP------LVAHRVHTEPLSGLIFT- 494 (548)
Q Consensus 428 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~---d~~~~~~------~~~~~~h~~~V~~l~fs- 494 (548)
++.. ..+... .... . .....+.+| +...... .....+|..+|++++|.
T Consensus 276 ~~~~~~~~~~~~~--~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 336 (372)
T 1k8k_C 276 AGKLSFGGRLDVP--KQSS----Q-------------RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 336 (372)
T ss_dssp TTEEEECCCCCCC---------------------------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE
T ss_pred CceEEEeeccCcc--ccch----h-------------hhcchhhhhhhcccccccccCccccccccccccCCcceeEEec
Confidence 6422 211110 0000 0 000112222 2111111 12224899999999966
Q ss_pred CC-----eEEEEECCCeEEEEeCCCCC
Q 008939 495 QE-----SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 495 pd-----~l~t~s~Dg~I~iW~~~~~~ 516 (548)
++ .|+|++.||.|++|++...+
T Consensus 337 ~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 337 GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCCcceeeEEEecCCCceEEEEecChh
Confidence 54 59999999999999986543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=299.25 Aligned_cols=297 Identities=17% Similarity=0.218 Sum_probs=224.2
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...|.+++|+|+ +|++|+.|+.|++||+.... ....... . ...|...|++++|+|++.
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~-----~las~~~D~~i~lw~~~~~~----~~~~~~~--~--~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG-----ILATGSTDRKIKLVSVKYDD----FTLIDVL--D--ETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT-----EEEEEESSSCEEEEECSSSC----CEEEEEE--C--TTCCCSCEEEEEECTTSS
T ss_pred ccceeeccCCCceeeeccCCC-----EEEEEcCCCEEEEEEecCCC----eEEEEEE--e--cCCccCCEEEEEECCCCC
Confidence 356778889999999999986 89999999999999987521 0111111 0 112788999999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.|+|||+....... ....++..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 72 -~las~s~D~~v~iw~~~~~~~~~-------------------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v 131 (330)
T 2hes_X 72 -LLAAGSFDSTVSIWAKEESADRT-------------------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131 (330)
T ss_dssp -EEEEEETTSCEEEEEC--------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred -EEEEEeCCCcEEEEEcccCcCcc-------------------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 99999999999999986421000 0123466778899999999999999999999999999
Q ss_pred EEEeCCC----CeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc--eeEEeccCCCCCeEEEEEecCCCC
Q 008939 324 RVFDYSK----EQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR--KVVAWGEGHNSWVSGVAFDSYWSQ 397 (548)
Q Consensus 324 ~vwd~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~ 397 (548)
++||++. .+++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++ +++..+.+|...|.+++|+|
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 207 (330)
T 2hes_X 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK---- 207 (330)
T ss_dssp EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC----
T ss_pred EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC----
Confidence 9999943 2567778899999999999999999999999999999999776 67889999999999999999
Q ss_pred CCCC--CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 398 PNSD--GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 398 ~~~d--g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
+ + .+|++++.|+.|++||++.+..... . ..
T Consensus 208 ---~~~~------~~l~s~s~D~~v~iw~~~~~~~~~~----------------------------------~-----~~ 239 (330)
T 2hes_X 208 ---TEGV------FRLCSGSDDSTVRVWKYMGDDEDDQ----------------------------------Q-----EW 239 (330)
T ss_dssp ---SSSS------CEEEEEETTSCEEEEEEEEECTTSC----------------------------------E-----EE
T ss_pred ---CCCe------eEEEEEeCCCeEEEEEecCCCcccc----------------------------------c-----ee
Confidence 6 4 5899999999999999865321000 0 00
Q ss_pred CceEEeec-CCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCc-----cccCCCC-cEE--EecC--CCCceEeeeccc
Q 008939 476 SPLVAHRV-HTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAE-----SQSSSSE-TVL--STSS--KDKPLLSSKVVT 543 (548)
Q Consensus 476 ~~~~~~~~-h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~-----~~~~~~~-~v~--~~s~--d~~~l~s~~~~g 543 (548)
.....+.. |...|++++|+++. |++++.||.|+||++..+.. ....|.. .+. +++| ++++|+++...|
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 11122333 88999999999874 99999999999999876531 1134554 554 7788 788999998876
Q ss_pred cc
Q 008939 544 SS 545 (548)
Q Consensus 544 ~~ 545 (548)
.+
T Consensus 320 ~v 321 (330)
T 2hes_X 320 IV 321 (330)
T ss_dssp EE
T ss_pred cE
Confidence 54
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=326.65 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=226.5
Q ss_pred CCCCCEEEEecCC-eEEEEEccCCCCCC--eEEEecCCCCceEEEecCCC---CCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 139 DGKGTYIIFNVGD-AIFISDLNSQDKDP--IKSIHFSNSNPVCHAFDQDA---KDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 139 ~~~g~~l~~~~~d-~v~vwd~~~~~~~~--i~~~~~~~~~~~~~~~~p~~---~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
+|++..+++++.| +|+|||+..+.... ...+..+...+.+++|+|+. .++.+|++++.||.|++||+.......
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 4555666666677 99999998754211 23355567789999999972 135799999999999999997531110
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.. .............|...|++++|+|++ .|++|+.||+|++||++.. ..+.
T Consensus 250 ~~-~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~-------------------------~~~~ 301 (524)
T 2j04_B 250 HV-FKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDP-------------------------EVPS 301 (524)
T ss_dssp SE-EECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBC-------------------------SSCS
T ss_pred cc-ceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCC-------------------------CCce
Confidence 00 000000000112478999999999864 7999999999999999852 1345
Q ss_pred eEeeecCCCeEEE--EECCCC-CEEEEEECCCeEEEEeCCCCeEEEeeeecCC--ceEEEEEccCCCEEEEEeCCCeEEE
Q 008939 293 ARWHICQGSINSI--AFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGKSYYG--ALLCCAWSMDGKYILTGGEDDLVQV 367 (548)
Q Consensus 293 ~~~~~h~~~v~~~--~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~sgs~dg~I~v 367 (548)
..+..|...|.++ +|+|++ ++|++++.|++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|+.|++
T Consensus 302 ~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 302 FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 5678899999999 578887 8999999999999999998887766766653 5889999999999999999999999
Q ss_pred EECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC------CCC
Q 008939 368 WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP------LGG 441 (548)
Q Consensus 368 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~------~~~ 441 (548)
||++++.++..+.+|...|++|+|+| +| .+|++++.|++|++||+... ++....... .+.
T Consensus 382 wd~~~~~~~~~l~gH~~~V~sva~Sp-------~g------~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~ 447 (524)
T 2j04_B 382 VPSRAAFAVHPLVSRETTITAIGVSR-------LH------PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLW 447 (524)
T ss_dssp EETTCTTCCEEEEECSSCEEEEECCS-------SC------CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEE
T ss_pred EECcccccceeeecCCCceEEEEeCC-------CC------CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEE
Confidence 99999988888889999999999999 98 78999999999999998654 222211100 122
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCCCeeEEEEeCC-----eEEEEECCCeEEEEeCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTEPLSGLIFTQE-----SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~~V~~l~fspd-----~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+.|++++. .+.. .....+|+.. +...+..+.+|...|.+|+|+|+ .|++|+.||+||||++...
T Consensus 448 ~v~~sp~g~------~~~~---~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 448 KWDYSIKDD------KYRI---DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ECBCCSSSC------EEEE---CCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EeccCCCCC------eEEc---cCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 455666553 1111 1122233222 34567788899999999999998 4899999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=303.58 Aligned_cols=320 Identities=16% Similarity=0.190 Sum_probs=249.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC----CCCeEEEecCCCCceEEEecCC-CCCC---ceEEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD----KDPIKSIHFSNSNPVCHAFDQD-AKDG---HDLLIGL 195 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~----~~~i~~~~~~~~~~~~~~~~p~-~~~~---~~l~~g~ 195 (548)
.+.+|...|.+++|+| .++++++.| .|+|||+.... ...+..+..+...+.+++|+|+ ..++ .+|++++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 4568999999999999 788888877 99999999744 2368888889999999999986 1124 6899999
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCccc-----CcceEEEEEe----cCCCcE-EEEEeCCCcEEEEEcCC---
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVN-----NSRCTSVTWV----PGGDGA-FVVGHADGNLYVYEKSK--- 262 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----p~~~~~-l~s~~~dg~v~vwd~~~--- 262 (548)
.||.|++||+...... .+....... .| ...|.+++|+ |++. + |++++.||.|++||++.
T Consensus 89 ~dg~i~iw~~~~~~~~-~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 89 FSGDLLFYRITREDET-KKVIFEKLD------LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp TTSCEEEEEEEECTTT-CCEEEEEEC------CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSS
T ss_pred CCCCEEEEEccCCccc-ccccceeec------ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCcccc
Confidence 9999999999873210 000011111 24 5899999999 9998 7 99999999999999986
Q ss_pred ---CCCCCCCcccccccceeeeecCCCCCCCCeeEe-------eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 263 ---DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARW-------HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
..... ..+...+ ..|...|.+++|+|++ +|++++.|+.|++||+++++
T Consensus 161 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 161 ESNSLTLN---------------------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp HHHHTTTC---------------------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred ccccceee---------------------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 21111 1112234 3477899999999999 99999999999999999999
Q ss_pred EEEeeee---c---CCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEeccC-------------CCCCeEEEE
Q 008939 333 LICGGKS---Y---YGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGEG-------------HNSWVSGVA 390 (548)
Q Consensus 333 ~~~~~~~---~---~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~~-------------h~~~V~~v~ 390 (548)
.+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++++..+.+ |...|.+++
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 9999988 8 9999999999999999999999 9999999999999999998 999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
|+| ++ .+|++++.|+.|++||+++++++..+....... .+ ..
T Consensus 299 ~~~-------~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~---------------~~ 340 (397)
T 1sq9_A 299 FND-------SG------ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI----------EI---------------EE 340 (397)
T ss_dssp ECS-------SS------SEEEEEETTSEEEEEETTTTEEEEEEECCGGGC----------SS---------------GG
T ss_pred ECC-------CC------CEEEEEeCCCeEEEEEcCCCceeEEEecccCcc----------cc---------------hh
Confidence 999 88 799999999999999999999888776210000 00 00
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCC------------eEEEEECCCeEEEEeCCCC
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd------------~l~t~s~Dg~I~iW~~~~~ 515 (548)
|..... ......|...|++++|+|+ .|++++.||.|++|++.++
T Consensus 341 ~~~~g~-~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 341 DILAVD-EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCCCBC-TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhhccc-cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 000000 0112346899999999998 4999999999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=319.90 Aligned_cols=363 Identities=15% Similarity=0.128 Sum_probs=289.2
Q ss_pred ccCCCCCC-ceeEEeCC--CCCEEEEecCC-eEEEEEccCC------CCCCeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSSSTS-MTNTNFDG--KGTYIIFNVGD-AIFISDLNSQ------DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h~~~-v~~~~~~~--~g~~l~~~~~d-~v~vwd~~~~------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
.+.+|... |.+++|+| +++++++++.| .|+|||+.++ ....+..+..+...+.+++|+|+ +.+|+++
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 134 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE---GRRLCVV 134 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT---SSEEEEE
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC---CCEEEEe
Confidence 45678999 99999999 99999998888 9999999754 23467777778899999999999 8889999
Q ss_pred EcC----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 195 LNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 195 ~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
+.+ +.|++||... .+.. ...|...|++++|+|+++.+|++++.|+.|++||+..
T Consensus 135 ~~~~~~~~~v~~~d~~~-------~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-------- 192 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGN-------SLGE-------VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-------- 192 (615)
T ss_dssp ECCSSCSEEEEETTTCC-------EEEE-------CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------
T ss_pred ccCCCCccEEEEEECCC-------ccee-------eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------
Confidence 988 7899998432 1111 1137899999999999976899999999999999875
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCC---CeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEee-e---ecCC
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQG---SINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGG-K---SYYG 342 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~-~---~~~~ 342 (548)
...+..+..|.. .|.+++|+|+ +++|++++.|+.|++||+++++.+..+ . .|..
T Consensus 193 ------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 193 ------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp ------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred ------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 234566777888 9999999999 999999999999999999999999888 6 8999
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ...+.++.|. ++ .++++++.|+
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~l~~~~~~g 319 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--------GN------GRIISLSLDG 319 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--------ET------TEEEEEETTS
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--------CC------CeEEEEECCC
Confidence 99999999 9999999999999999999999998888866 4678888884 44 4899999999
Q ss_pred eEEEEECCCCeEEeeeecCC-CCCCce---------------------------------ec---------CCCCcccc-
Q 008939 419 RLLLWDLEMDEIVVPLRRGP-LGGSPT---------------------------------FS---------TGSQSAHW- 454 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~-~~~~~~---------------------------------~~---------~~~~~~~~- 454 (548)
.|++||+.+++.+..+..+. .+..+. +. .++....|
T Consensus 320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 99999999887776664321 111111 11 11111111
Q ss_pred --------------------------------------------------------CCeeeeccc-CCCCceeecCCCCc
Q 008939 455 --------------------------------------------------------DNVCPVGTL-QPAPSMRDVPKLSP 477 (548)
Q Consensus 455 --------------------------------------------------------d~~~~~g~~-~~~~~~~d~~~~~~ 477 (548)
...+..+.. ++.+++||+.....
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence 122344444 77888888877655
Q ss_pred e-EEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccc--cC-CCCcEE--EecC----------CCCceEee
Q 008939 478 L-VAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ--SS-SSETVL--STSS----------KDKPLLSS 539 (548)
Q Consensus 478 ~-~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~--~~-~~~~v~--~~s~----------d~~~l~s~ 539 (548)
. ..+..|...|++++|+|+ .|++++.||.|++||+...+... .. |...+. +++| ++++|+++
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~ 559 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE
Confidence 4 667789999999999997 49999999999999998766322 23 677776 7889 99999999
Q ss_pred eccccc
Q 008939 540 KVVTSS 545 (548)
Q Consensus 540 ~~~g~~ 545 (548)
...|.+
T Consensus 560 ~~dg~i 565 (615)
T 1pgu_A 560 SLDTNI 565 (615)
T ss_dssp ETTSCE
T ss_pred cCCCcE
Confidence 877654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=310.24 Aligned_cols=332 Identities=13% Similarity=0.100 Sum_probs=229.8
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+.++|.+++|+|+|++|++++.| .|+|||+.++..+.+..+..|...+.+++|+|+ +.+|++++.||.|++||++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCCEEEEETTSSEEEC----
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCEEEEEeCCCeEEEEEcCC
Confidence 46688999999999999998777 999999997522467777788999999999998 78999999999999999987
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
.. ..+.... ...|...|++++|+|++. +|++++.|+.|++||++....
T Consensus 87 ~~--~~~~~~~-------~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~---------------------- 134 (377)
T 3dwl_C 87 DG--TWKQTLV-------LLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND---------------------- 134 (377)
T ss_dssp ----CCCCEEE-------CCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC---------------------------
T ss_pred CC--ceeeeeE-------ecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc----------------------
Confidence 21 0011111 113789999999999998 899999999999999986321
Q ss_pred CCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCC------------------CCeEEEeeeecCCceEEEE
Q 008939 288 KSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYS------------------KEQLICGGKSYYGALLCCA 348 (548)
Q Consensus 288 ~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~------------------~~~~~~~~~~~~~~v~~l~ 348 (548)
...+..+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+ .|...|.+++
T Consensus 135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 113445555 88999999999999999999999999999985 35566666 8999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 349 WSMDGKYILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 349 ~spdg~~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
|+|++++|++++.|+.|++||+++++. +..+.+|...|.+++|+| +| .+|++++.|+.+ +|+
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~------~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-------ES------AIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE-------TT------EEEEEESSSSEE-EEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC-------CC------CEEEEEcCCcEE-EEE
Confidence 999999999999999999999999877 788889999999999999 98 788888766655 776
Q ss_pred CCCCeE--EeeeecCCCCCCceecCCCCccccCCeeee--cccCCCCceeecC--CCCceEEeecCCCCeeEEEEeCC--
Q 008939 425 LEMDEI--VVPLRRGPLGGSPTFSTGSQSAHWDNVCPV--GTLQPAPSMRDVP--KLSPLVAHRVHTEPLSGLIFTQE-- 496 (548)
Q Consensus 425 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--g~~~~~~~~~d~~--~~~~~~~~~~h~~~V~~l~fspd-- 496 (548)
...... ...+................... ...... ..........+.. ..........|...|++|++.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGR-EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CCC---CCSBCCCSCCCCCCBSSSSSBCCCC-CC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred eCCCceEEEeeeccccccccccccccccccc-ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence 654321 11111111100000000000000 000000 0000000000000 00112223469999999997764
Q ss_pred ----eEEEEECCCeEEEEeC
Q 008939 497 ----SVLTVCREGHIKIWMR 512 (548)
Q Consensus 497 ----~l~t~s~Dg~I~iW~~ 512 (548)
.|+|++.||.|+|||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.90 Aligned_cols=362 Identities=15% Similarity=0.137 Sum_probs=281.1
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|.+.|.+++|+|+|.++++++.+ .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIAR---KNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGG---GTEEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCC---CCEEEEEeCCCeEEEEE
Confidence 45789999999999999999998877 99999999854 88888889999999999998 88999999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++.+.... .|...|++++|+|+++ +|++++.||.|++||++..
T Consensus 84 ~~~-----~~~~~~~~-------~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~--------------------- 129 (814)
T 3mkq_A 84 YNT-----GEKVVDFE-------AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--------------------- 129 (814)
T ss_dssp TTT-----CCEEEEEE-------CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGT---------------------
T ss_pred CCC-----CcEEEEEe-------cCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCC---------------------
Confidence 876 22222211 3789999999999999 8999999999999999752
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-CceEEEEEcc--CCCEEEEEe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-GALLCCAWSM--DGKYILTGG 360 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~l~~sp--dg~~l~sgs 360 (548)
......+..|...|.+++|+| ++++|++++.||.|++||+.+++....+..+. ..+.+++|+| ++++|++++
T Consensus 130 ----~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 130 ----WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp ----SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred ----ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 134566778889999999999 88999999999999999999887776666554 8899999999 999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PL 439 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~ 439 (548)
.|+.|++||+++++.+..+.+|...|.+++|+| ++ .+|++++.|+.|++||+.+++.+..+..+ ..
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-------TL------PIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SEEEEEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence 999999999999999999999999999999999 88 69999999999999999999988877654 34
Q ss_pred CCCceecCCCCc----cccCCeeeecccC---------------------CC---------CceeecCCCC----ceEEe
Q 008939 440 GGSPTFSTGSQS----AHWDNVCPVGTLQ---------------------PA---------PSMRDVPKLS----PLVAH 481 (548)
Q Consensus 440 ~~~~~~~~~~~~----~~~d~~~~~g~~~---------------------~~---------~~~~d~~~~~----~~~~~ 481 (548)
+..+.+++++.. ...+..+...... .. ...|++.... ....+
T Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (814)
T 3mkq_A 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL 352 (814)
T ss_dssp EEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEE
T ss_pred EEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecC
Confidence 445555665521 1111111111100 00 0011111111 12333
Q ss_pred ecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCccccCCCCcEEEecCCCCceEeeeccccc
Q 008939 482 RVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
..|...+.+++|+|++ |++++ |+.+.+|++........ ..-.-++++||+++|+++...|.+
T Consensus 353 ~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~-~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 353 GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF-GKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE-EECSEEEECTTSSCEEEECTTCCE
T ss_pred CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC-CceEEEEEeCCCCeEEEEeCCCcE
Confidence 4566778999999985 66666 99999999764322111 112234788999999998776543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=308.26 Aligned_cols=338 Identities=13% Similarity=0.144 Sum_probs=263.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEe----eecccccccceeeeeeeccC-
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSL----RQQLQDVGKKLVGAHHYNKD- 225 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl----~~~~~~~~~~~~~~~~~~~~- 225 (548)
.+.+|+++... .+.....+...+.+++|+|+ +. +|++|+.||.|++||+ ..... ...+.....+...
T Consensus 26 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~ 98 (425)
T 1r5m_A 26 IDSSDDLDGFV--KILKEIVKLDNIVSSTWNPL---DESILAYGEKNSVARLARIVETDQEGKK--YWKLTIIAELRHPF 98 (425)
T ss_dssp --------CCC--EECEEEEECSCCSEEEECSS---CTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCC
T ss_pred ccccccchhhh--hheeeeeccCceEEEEECCC---CCcEEEEecCCceEEEEEEecccCCccc--cccccccccccccc
Confidence 45688887532 44444556789999999999 77 9999999999999999 54110 0000000011111
Q ss_pred -----CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 226 -----GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 226 -----~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
...|...|++++|+|++. +|++++.||.|++||.. ...+..+..|..
T Consensus 99 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~~~---------------------------~~~~~~~~~~~~ 150 (425)
T 1r5m_A 99 ALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWNKT---------------------------GALLNVLNFHRA 150 (425)
T ss_dssp CCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEETT---------------------------SCEEEEECCCCS
T ss_pred cccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeCC---------------------------CCeeeeccCCCc
Confidence 112577999999999998 99999999999999933 244667778889
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc---------------eEEEEEccCCCEEEEEeCCCeE
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA---------------LLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------------v~~l~~spdg~~l~sgs~dg~I 365 (548)
.|.+++|+|++++|++++.|+.|++||+.+++.+..+..+... +.+++|+|++ .+++++.|+.|
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i 229 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAI 229 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCE
T ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999998888877766 9999999986 58899999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec-CCCCCCce
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR-GPLGGSPT 444 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~~~~~~~~ 444 (548)
++||+++++.+..+..|...|.+++|+| ++ .+|++++.|+.|++||+++++.+..+.. ...+..+.
T Consensus 230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 296 (425)
T 1r5m_A 230 FVYQITEKTPTGKLIGHHGPISVLEFND-------TN------KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296 (425)
T ss_dssp EEEETTCSSCSEEECCCSSCEEEEEEET-------TT------TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEE
T ss_pred EEEEcCCCceeeeeccCCCceEEEEECC-------CC------CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEE
Confidence 9999999999999999999999999999 88 6899999999999999999888877753 34556666
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCC------
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVA------ 516 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~------ 516 (548)
+++++ .+..+..++.+++||+...+++..+..|...|.+++|+|+ .|++++.||.|++|++....
T Consensus 297 ~~~~~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 369 (425)
T 1r5m_A 297 WVGDD-------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369 (425)
T ss_dssp EETTT-------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred ECCCC-------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence 76653 6678888999999999999999999999999999999997 49999999999999987644
Q ss_pred ----------------ccccCCCC--cEE--EecCCCCceEeeeccccc
Q 008939 517 ----------------ESQSSSSE--TVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 517 ----------------~~~~~~~~--~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.....+.. .+. +++|++++|+++...|.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp ---------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred ecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 11224433 565 788999999999887755
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=298.94 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=239.0
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEec-C---C-eEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNV-G---D-AIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~-~---d-~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
....+|...|.+++|+|++..+++.+ . | .|+|||+.++. ..... ..+...+.+++|+|+..++.+|++|+.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD--LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS--EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc--ccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34456999999999999997666544 3 5 99999999754 33222 2477899999999985446899999999
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEE------ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW------VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~------~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
|.|++||++.. +...... ..|...|++++| +|++. +|++++.||.|++||++....
T Consensus 90 g~i~iwd~~~~-----~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~------ 151 (357)
T 3i2n_A 90 GNLHIWNLEAP-----EMPVYSV------KGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD------ 151 (357)
T ss_dssp SCEEEECTTSC-----SSCSEEE------CCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS------
T ss_pred CeEEEEeCCCC-----CccEEEE------EecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC------
Confidence 99999999862 2111111 138899999965 57787 999999999999999986321
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecC----CCeEEEE----ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQ----GSINSIA----FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA 343 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~----~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 343 (548)
++..+..|. ..|.+++ |+|++++|++++.|+.|++||+++++.+.. ..|...
T Consensus 152 -------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 211 (357)
T 3i2n_A 152 -------------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG 211 (357)
T ss_dssp -------------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC
T ss_pred -------------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCc
Confidence 233333333 3788888 788999999999999999999999987554 568899
Q ss_pred eEEEEEcc---CCCEEEEEeCCCeEEEEECCCceeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeE-EEEEE
Q 008939 344 LLCCAWSM---DGKYILTGGEDDLVQVWSMEDRKVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGSV 414 (548)
Q Consensus 344 v~~l~~sp---dg~~l~sgs~dg~I~vwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s~ 414 (548)
|.+++|+| ++++|++++.|+.|++||+++++.+..+. +|...|.+++|+| ++ . +|+++
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~l~~~ 278 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-------QN------RELFLTA 278 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-------TE------EEEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-------CC------CcEEEEE
Confidence 99999999 99999999999999999999876655444 8999999999999 87 5 89999
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEe
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fs 494 (548)
+.|+.|++||++.+............. .......++..+.+|...|++++|+
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~----------------------------~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEM----------------------------GVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCC----------------------------CCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eCCCcEEEeecCCCcccccccCCCCcc----------------------------ccccccceeeccccCCCCeeEEEEc
Confidence 999999999998766443222100000 0001224567788999999999999
Q ss_pred CCe--EE-EEECCCeEEEEeCCCC
Q 008939 495 QES--VL-TVCREGHIKIWMRPGV 515 (548)
Q Consensus 495 pd~--l~-t~s~Dg~I~iW~~~~~ 515 (548)
|++ |+ +++.||.|++|++...
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCeEEEEecCCCcEEEEECCCc
Confidence 984 76 8999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=307.85 Aligned_cols=302 Identities=15% Similarity=0.187 Sum_probs=242.5
Q ss_pred EEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce
Q 008939 154 FISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 233 (548)
Q Consensus 154 ~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v 233 (548)
..|+... ......+..|...|++++|+|+ +.+|++|+.||.|++||+.+. +.... .. .|...|
T Consensus 49 ~~~~~~~--~~~~~~l~gH~~~V~~~~~sp~---~~~l~s~s~D~~v~iWd~~~~-----~~~~~-~~------~h~~~v 111 (380)
T 3iz6_a 49 VSFNPTD--LVCCRTLQGHSGKVYSLDWTPE---KNWIVSASQDGRLIVWNALTS-----QKTHA-IK------LHCPWV 111 (380)
T ss_dssp CCCCCCC--CEEEEEECCCSSCEEEEEECTT---SSCEEEEETTSEEEEEETTTT-----EEEEE-EE------CCCTTC
T ss_pred cccccce--eEEeecccccccEEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC-----ccceE-Ee------cCCCCE
Confidence 3444443 2366778889999999999998 889999999999999998762 22211 11 378899
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CC
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GT 312 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~ 312 (548)
.+++|+|++. +|++|+.|+.|++||+........ .......+.+|.+.|.++.|+|+ +.
T Consensus 112 ~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~-------------------~~~~~~~~~gh~~~v~~~~~~~~~~~ 171 (380)
T 3iz6_a 112 MECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDG-------------------NMPVSRVLTGHKGYASSCQYVPDQET 171 (380)
T ss_dssp CCCEECTTSS-EEEECCSSSCCEEEECCCCSSCCC-------------------SSTTCCBCCCCSSCCCCCBCCSSSSS
T ss_pred EEEEECCCCC-EEEEeeCCCcEEEEECCCCccccC-------------------CccceeeccCCCcceEEEEEecCCCC
Confidence 9999999999 999999999999999975321110 11234556788899999999996 56
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEee-----eecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECC-CceeEEeccCCCCC
Q 008939 313 YLATVGRDGYLRVFDYSKEQLICGG-----KSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSW 385 (548)
Q Consensus 313 ~l~s~~~dg~v~vwd~~~~~~~~~~-----~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h~~~ 385 (548)
.|++++.|+.|++||+++++.+..+ .+|...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~ 251 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD 251 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC
Confidence 7999999999999999999988776 57889999999987 88999999999999999998 45778889999999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||+++++++..+......
T Consensus 252 v~~v~~~p-------~~------~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------------------------- 293 (380)
T 3iz6_a 252 INSVKFFP-------DG------QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR------------------------- 293 (380)
T ss_dssp CCEEEECT-------TS------SEEEEECSSSCEEEEETTTTEEEEEECCCCSS-------------------------
T ss_pred eEEEEEec-------CC------CeEEEEcCCCeEEEEECCCCcEEEEecccccc-------------------------
Confidence 99999999 98 79999999999999999999887765441100
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc------ccCCCCcEE--EecCCCCc
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES------QSSSSETVL--STSSKDKP 535 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~------~~~~~~~v~--~~s~d~~~ 535 (548)
...+...|++++|+|++ |++++.||.|++||+...... ...|...|. +++||+++
T Consensus 294 ---------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 294 ---------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp ---------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred ---------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence 01234568999999974 999999999999998765522 135666665 88999999
Q ss_pred eEeeeccccc
Q 008939 536 LLSSKVVTSS 545 (548)
Q Consensus 536 l~s~~~~g~~ 545 (548)
|+++...|.+
T Consensus 359 l~sgs~D~~i 368 (380)
T 3iz6_a 359 LCTGSWDKNL 368 (380)
T ss_dssp EEEECTTSCE
T ss_pred EEEeeCCCCE
Confidence 9999877654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=293.70 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=261.4
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
+...+.+++|+|+ +..++++..++.+.+|+... ........ .|...|++++|+|+++ +|++++
T Consensus 8 ~~~~v~~~~~s~d---g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~-~l~~~~- 70 (337)
T 1gxr_A 8 GSKPAYSFHVTAD---GQMQPVPFPPDALIGPGIPR-----HARQINTL-------NHGEVVCAVTISNPTR-HVYTGG- 70 (337)
T ss_dssp EEEECCEEEECSS---SCEEECCCCTTSSSSTTCCS-----EEEEEEEE-------CCSSCCCEEEECSSSS-EEEEEC-
T ss_pred cCCceeEEEECCC---CCEEEeecCCCcEeccccCC-----ccccceec-------cCCCceEEEEEecCCc-EEEEcC-
Confidence 4567899999999 88898888888776664332 11111111 2789999999999999 888888
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~ 329 (548)
||.|++||+...... ..+..+. .|...|.+++|+|++++|++++.|+.|++||++
T Consensus 71 dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 71 KGCVKVWDISHPGNK-----------------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp BSEEEEEETTSTTCC-----------------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCeEEEEECCCCCce-----------------------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 999999999863211 1223333 577899999999999999999999999999999
Q ss_pred CCe--EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 330 KEQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 330 ~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+| ++
T Consensus 128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~----- 195 (337)
T 1gxr_A 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-------DG----- 195 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-------TS-----
T ss_pred CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-------CC-----
Confidence 877 5667788999999999999999999999999999999999999999999999999999999 88
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++.+..+.....+..+.+++++ ..+..+..++.+++||+...+. ..+..|...
T Consensus 196 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 267 (337)
T 1gxr_A 196 -TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG------EWLAVGMESSNVEVLHVNKPDK-YQLHLHESC 267 (337)
T ss_dssp -SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS------SEEEEEETTSCEEEEETTSSCE-EEECCCSSC
T ss_pred -CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCC------CEEEEEcCCCcEEEEECCCCCe-EEEcCCccc
Confidence 78999999999999999999999888877777788888776 4667788889999999988765 467789999
Q ss_pred eeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc-ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQE--SVLTVCREGHIKIWMRPGVAES-QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~-~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|+|+ .|++++.||.|++|++...... ...+...+. +++|++++|+++...|.+
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 999999997 4999999999999999876643 334556665 789999999999887654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=310.07 Aligned_cols=318 Identities=13% Similarity=0.161 Sum_probs=252.6
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.++.++|+|+|+++++++.| .+++||+.+.. ....+..+ ..+.+..|+|+ +.+|++|+.||.|++||++..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~-- 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD--GSKMLKRA-DYTAVDTAKLQ---MRRFILGTTEGDIKVLDSNFN-- 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEE--TTTTSCSC-CEEEEEEECSS---SCEEEEEETTSCEEEECTTSC--
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccc--eeeEEecC-CceEEEEEecC---CCEEEEEECCCCEEEEeCCCc--
Confidence 34578999999999998877 99999998744 33333323 33445567887 789999999999999998751
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..... ...|...|++++|+|++. +|++++.|+.|++||++. ..
T Consensus 130 ----~~~~~------~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~--------------------------~~ 172 (420)
T 3vl1_A 130 ----LQREI------DQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKD--------------------------GS 172 (420)
T ss_dssp ----EEEEE------TTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT--------------------------CC
T ss_pred ----ceeee------cccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCC--------------------------Cc
Confidence 11111 124889999999999998 999999999999999986 23
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee---cCCceE---------------------E
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---YYGALL---------------------C 346 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~---------------------~ 346 (548)
.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+. +
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 252 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence 4667788999999999999999999999999999999999998888764 333444 4
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeE-EEEEEeCCCeEEEEE
Q 008939 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGSVGQDTRLLLWD 424 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s~~~Dg~i~lwd 424 (548)
++|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+| ++ . +|++++.|+.|++||
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG-------NN------ANYIYAGYENGMLAQWD 319 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS-------SC------TTEEEEEETTSEEEEEE
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC-------CC------CCEEEEEeCCCeEEEEE
Confidence 5557899999999999999999999988776664 5899999999999 87 5 899999999999999
Q ss_pred CCCCeE-EeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC---------CceEEeecCCCCeeEEE
Q 008939 425 LEMDEI-VVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL---------SPLVAHRVHTEPLSGLI 492 (548)
Q Consensus 425 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~---------~~~~~~~~h~~~V~~l~ 492 (548)
+++++. +..+..+ ..+..+.+. ++ ..+..+..++.+++|++... .....+..|...|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYFA-AG------ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEEE-TT------EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred cCCCcCchhhhhccCCCCceEEEeC-CC------CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 998754 5555532 233333332 22 35677888889999998762 33445668899999999
Q ss_pred EeCC-----eEEEEECCCeEEEEeCCC
Q 008939 493 FTQE-----SVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 493 fspd-----~l~t~s~Dg~I~iW~~~~ 514 (548)
|+|+ .|++++.+|.+++|++..
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EccCCCCcceEEEEcCCceEEEEeccC
Confidence 9996 389999999999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=303.74 Aligned_cols=286 Identities=14% Similarity=0.122 Sum_probs=231.5
Q ss_pred ccCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|...|.+++|+|++ .++++++.| .|+|||+.++. ....+. .+...+.+++|+|+ ++.+|++++.||.|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGAT 143 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEE
Confidence 446789999999999999 899998887 99999999855 555554 48889999999994 16799999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||++.. .+.... ....+...|.+++|+|++. +|++++.|+.|++||++.
T Consensus 144 ~iwd~~~~------~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~------------------ 194 (383)
T 3ei3_B 144 TLRDFSGS------VIQVFA----KTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG------------------ 194 (383)
T ss_dssp EEEETTSC------EEEEEE----CCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS------------------
T ss_pred EEEECCCC------ceEEEe----ccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC------------------
Confidence 99998741 111111 1112568899999999999 999999999999999852
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCC----CeEEEeeeecCCceEEEEEcc-CCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSK----EQLICGGKSYYGALLCCAWSM-DGK 354 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~l~~sp-dg~ 354 (548)
.++..+..|...|.+++|+|+++ +|++++.|+.|++||+++ ++++..+ .|...|.+++|+| +++
T Consensus 195 ---------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 195 ---------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp ---------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred ---------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC
Confidence 35677888999999999999998 999999999999999987 5666666 6999999999999 999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCC-------C----------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHN-------S----------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------~----------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+|++++.|+.|++||+++++.+..+.+|. . .+..++|+| || .+ +++.|
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-------dg------~~--s~s~d 329 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-------DD------QL--LLNDK 329 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-------CT------TT--CTTCC
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-------Cc------cc--ccCCC
Confidence 99999999999999999887666655442 2 334455666 65 22 77789
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
+.|++||+.+++++..+.. ..|...+..++|+|++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~---------------------------------------------~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRD---------------------------------------------PNAAGIISLNKFSPTG 364 (383)
T ss_dssp CCEEEEETTTCCEEEEECB---------------------------------------------TTBCSCCCEEEECTTS
T ss_pred CeEEEEecCCCceeeeecC---------------------------------------------CCCCceEEEEEEecCc
Confidence 9999999999887765543 1256778888999974
Q ss_pred --EEEEECCCeEEEEeCCC
Q 008939 498 --VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 498 --l~t~s~Dg~I~iW~~~~ 514 (548)
|++++ |+.|+|||+.+
T Consensus 365 ~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SEEEEEE-TTEEEEEECC-
T ss_pred cEEEEec-CCcEEEEecCC
Confidence 77886 99999999874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=292.34 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=224.5
Q ss_pred CeEEEecCCCCceEEEe-----cCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEEEEE
Q 008939 165 PIKSIHFSNSNPVCHAF-----DQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTSVTW 238 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~-----~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~ 238 (548)
....+..|...|++++| ++. ++.+|++|+.|+.|++||+....... ...... ....|...|++++|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~--d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~------~l~~h~~~V~~~~~ 84 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENE--DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK------ALTGHNHFVSDLAL 84 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTC--CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEE------EECCCSSCEEEEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCC--CCCEEEEEcCCCEEEEEECCcCCcccccccccc------hhccCCCceEEEEE
Confidence 45567778899999999 541 37899999999999999997521110 000111 11248899999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|++. +|++++.|+.|++||+++ ...+..+..|...|.+++|+|++++|++++
T Consensus 85 ~~~~~-~l~s~s~D~~v~lwd~~~--------------------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~ 137 (343)
T 2xzm_R 85 SQENC-FAISSSWDKTLRLWDLRT--------------------------GTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137 (343)
T ss_dssp CSSTT-EEEEEETTSEEEEEETTS--------------------------SCEEEEEECCCSCEEEEEECSSTTEEEEEE
T ss_pred CCCCC-EEEEEcCCCcEEEEECCC--------------------------CcEEEEEcCCCCcEEEEEECCCCCEEEEEc
Confidence 99998 999999999999999986 245677888999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEeee---ecCCceEEEEEccCC----------CEEEEEeCCCeEEEEECCCceeEEeccCCCCC
Q 008939 319 RDGYLRVFDYSKEQLICGGK---SYYGALLCCAWSMDG----------KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~---~~~~~v~~l~~spdg----------~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
.|+.|++||+.... ..... .|...|.+++|+|++ .+|++++.|+.|++||. +.+....+.+|...
T Consensus 138 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 138 AEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp TTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred CCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 99999999998443 33332 688899999999987 78999999999999994 56777788899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||+......
T Consensus 216 v~~~~~s~-------~g------~~l~sgs~dg~v~iwd~~~~~~~---------------------------------- 248 (343)
T 2xzm_R 216 VNHLSISP-------NG------KYIATGGKDKKLLIWDILNLTYP---------------------------------- 248 (343)
T ss_dssp EEEEEECT-------TS------SEEEEEETTCEEEEEESSCCSSC----------------------------------
T ss_pred ceEEEECC-------CC------CEEEEEcCCCeEEEEECCCCccc----------------------------------
Confidence 99999999 99 79999999999999998542211
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc---------------cCCCCcEE--
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ---------------SSSSETVL-- 527 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~---------------~~~~~~v~-- 527 (548)
...+ .+...|.+++|+|+. +++++.|+.|++|++.+..... ..|...+.
T Consensus 249 ------------~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 249 ------------QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp ------------SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred ------------ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 0111 234569999999985 7778889999999987654211 13455565
Q ss_pred EecCCCCceEeeeccccc
Q 008939 528 STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 528 ~~s~d~~~l~s~~~~g~~ 545 (548)
+|+|++++|++|...|.+
T Consensus 316 ~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp EECSSSCCEEEEETTSEE
T ss_pred EECCCCCeEEEecCCceE
Confidence 889999999999887654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=321.71 Aligned_cols=306 Identities=17% Similarity=0.220 Sum_probs=239.5
Q ss_pred cCCCCCCceeEEeCCCC-CEEEEecCC-eEEEEEccCCCC---CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 126 ASSSSTSMTNTNFDGKG-TYIIFNVGD-AIFISDLNSQDK---DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g-~~l~~~~~d-~v~vwd~~~~~~---~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
..+|...|.+++|++++ .+|++++.| .|+|||+..... .....+..|...+.+++|+|+ +.+|++|+.||.|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD---GQFALSGSWDGEL 454 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC---CCEEEEEeCCCcE
Confidence 45899999999999875 688888887 999999986432 134567789999999999998 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++||+.+. +.... . ..|...|++++|+|++. +|++++.|++|++||+..... ..
T Consensus 455 ~vwd~~~~-----~~~~~-~------~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~-------------~~ 508 (694)
T 3dm0_A 455 RLWDLAAG-----VSTRR-F------VGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECK-------------YT 508 (694)
T ss_dssp EEEETTTT-----EEEEE-E------ECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEE-------------EE
T ss_pred EEEECCCC-----cceeE-E------eCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcc-------------ee
Confidence 99998762 22211 1 13899999999999998 899999999999999753100 00
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC--CEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG--TYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
+ ......|...|.+++|+|++ .+|++++.|+.|++||+++++++..+.+|.+.|.+++|+|++++|++
T Consensus 509 ~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s 578 (694)
T 3dm0_A 509 I----------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578 (694)
T ss_dssp E----------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred e----------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence 0 00113567889999999976 68999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
|+.|+.|++||+++++++..+. +...|.+++|+| ++ ++|+ ++.|+.|++||+++++++..+....
T Consensus 579 g~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp-------~~------~~l~-~~~~~~i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 579 GGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSP-------NR------YWLC-AATEHGIKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp EETTSBCEEEETTTTEEEECCB-CSSCEEEEEECS-------SS------SEEE-EEETTEEEEEETTTTEEEEEECCCC
T ss_pred EeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcC-------CC------cEEE-EEcCCCEEEEECCCCCChhhhcccc
Confidence 9999999999999999988887 557899999999 88 4555 4557779999999999887775421
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.......... .......+...+++++|+|++ |++|+.||.|+||++.
T Consensus 644 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 644 KAEAEKADNS----------------------------GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp C--------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccccccc----------------------------ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1100000000 000111234458899999984 9999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=287.15 Aligned_cols=282 Identities=13% Similarity=0.151 Sum_probs=241.6
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++| +++.++++++.| .|+|||+.++. .+..+..+...+.+++|+|+ +.+|++++.||.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSE---KELLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--EEEEeecCCccEEEEEECCC---CCEEEEecCCCeEEEE
Confidence 45689999999999 999999998888 99999998743 77777888999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++.... ..+.+.. . ..|...|.+++| ++. +|++++.||.|++||..
T Consensus 87 ~~~~~~--~~~~~~~-~------~~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d~~---------------------- 132 (313)
T 3odt_A 87 PLFATS--GEDPLYT-L------IGHQGNVCSLSF--QDG-VVISGSWDKTAKVWKEG---------------------- 132 (313)
T ss_dssp ETTCCT--TSCC-CE-E------CCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETT----------------------
T ss_pred EeeecC--CCCcccc-h------hhcccCEEEEEe--cCC-EEEEEeCCCCEEEEcCC----------------------
Confidence 987621 1111111 1 137899999999 345 89999999999999922
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~ 361 (548)
..+..+..|...|.+++|+| ++++|++++.|+.|++|| ..+.+..+.. |...+.+++|+|++. +++++.
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 34667778889999999998 899999999999999999 4566666666 889999999999998 999999
Q ss_pred CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
|+.|++||+++++++..+.+|...|.+++|+| ++ .|++++.|+.|++||+++++++..+
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-------~~-------~l~~~~~dg~v~iwd~~~~~~~~~~------- 262 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-------NG-------DIVSCGEDRTVRIWSKENGSLKQVI------- 262 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECT-------TS-------CEEEEETTSEEEEECTTTCCEEEEE-------
T ss_pred CCeEEEEECCchhhhhhhhcCCceEEEEEEec-------CC-------CEEEEecCCEEEEEECCCCceeEEE-------
Confidence 99999999999999999999999999999999 87 4889999999999999988766544
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~ 516 (548)
..|...|++++|+|+. +++++.||.|++|++....
T Consensus 263 ----------------------------------------~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 263 ----------------------------------------TLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp ----------------------------------------ECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred ----------------------------------------eccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 3477889999999985 8899999999999998755
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.52 Aligned_cols=376 Identities=13% Similarity=0.022 Sum_probs=265.1
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|...|.+++|+|++.+|++++.| .|+||+..... .+..+ .+...|.+++|+| +.+|++++.|+.|++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~--~~~~~-~~~~~V~~l~fsp----g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE--VVIKL-EDRSAIKEMRFVK----GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE--EEEEC-SSCCCEEEEEEET----TTEEEEEETTCEEEEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE--EEEEc-CCCCCEEEEEEcC----CCEEEEEECcCeEEEE
Confidence 344788999999999999999999988 99999987532 33333 3677899999999 2389999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+++ ++ ...... |...|++++|+|++. +|++|+.||.|++||++..... . +.+..
T Consensus 85 d~~~-----~~-~~~~~~-------~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~--~---------~~i~~ 139 (902)
T 2oaj_A 85 SLYS-----QK-VLTTVF-------VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLS--S---------FKLDN 139 (902)
T ss_dssp ETTT-----CS-EEEEEE-------CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEE--E---------EEECC
T ss_pred ECCC-----Cc-EEEEEc-------CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccc--c---------ceecc
Confidence 9976 22 222222 567899999999999 9999999999999999863110 0 00000
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec------------------CCce
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY------------------YGAL 344 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------------~~~v 344 (548)
. ......+..|.+.|.+++|+|+ +..|++++.|+.| +||+++++++..+..| ...|
T Consensus 140 --~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 140 --L--QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp --H--HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred --c--cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCe
Confidence 0 0000123567899999999995 5789999999999 9999999988877655 4779
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe--c---cC-------------CCCCeEEEEEecCCCCCCCCCCccc
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW--G---EG-------------HNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~--~---~~-------------h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
.+++|+|+|++|++|+.|+.|++||+++++++.. + .. |...|.+++|++.. ++|+
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~---~pd~---- 287 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN---NPEY---- 287 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS---STTE----
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC---CCCC----
Confidence 9999999999999999999999999999887653 3 12 35579999997510 0032
Q ss_pred eeEEEEEEeCC-----CeEEEEECC------------------CCeEEeeeec--CCCCCCceecCCC-C--ccccC-Ce
Q 008939 407 VMYRFGSVGQD-----TRLLLWDLE------------------MDEIVVPLRR--GPLGGSPTFSTGS-Q--SAHWD-NV 457 (548)
Q Consensus 407 ~~~~l~s~~~D-----g~i~lwd~~------------------~~~~~~~~~~--~~~~~~~~~~~~~-~--~~~~d-~~ 457 (548)
..+|++++.| ..|.+|++. ..++...+.. ...+..+.+.+.. . ....+ ..
T Consensus 288 -~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 288 -TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp -EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred -CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 1567788766 379999853 2223333321 1222233333311 1 01122 23
Q ss_pred eeecccCCCCceeecCCCCceE-----------------------------------------EeecCCCCeeEEEEeCC
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLV-----------------------------------------AHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~-----------------------------------------~~~~h~~~V~~l~fspd 496 (548)
+..+..++.+++|+++...+.. .+.+|...+..++|+|+
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 4455557778888875443221 13455566666777887
Q ss_pred e--EEEEECCCeEEEEeCCCCCccc-------------cCCCCcEE--EecCCCCceEeeeccccc
Q 008939 497 S--VLTVCREGHIKIWMRPGVAESQ-------------SSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 497 ~--l~t~s~Dg~I~iW~~~~~~~~~-------------~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+ |+||+.|++||+||+..+.... ..|...|. +|+||+++||+|...|.+
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV 512 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV 512 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence 4 9999999999999998764321 15666776 889999999999887654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=302.46 Aligned_cols=339 Identities=16% Similarity=0.177 Sum_probs=268.4
Q ss_pred ccCCCCCCc-eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 125 GASSSSTSM-TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 125 ~~~~h~~~v-~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
.+.+|...+ .++.| ++.++++++.| .|++||+.++. .+..+..|...+.+++|+|+ + .|++|+.||.|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~---~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG---G-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECST---T-EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCC---C-EEEEEeCCCCEEE
Confidence 455677765 55666 56789998887 99999999854 88888899999999999987 4 8999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+++ ++.+.. . ..|...|.+++|++ ++. +|++++.||.|++||++........... .... .
T Consensus 188 wd~~~-----~~~~~~-~------~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~--~ 251 (464)
T 3v7d_B 188 WDIKK-----GCCTHV-F------EGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEE-HDYP--L 251 (464)
T ss_dssp EETTT-----TEEEEE-E------CCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC-------CCSS--E
T ss_pred EECCC-----CcEEEE-E------CCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCccccccccc-CCcc--e
Confidence 99976 222211 1 13889999999995 555 8999999999999999864322111100 0000 0
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
...........+..+..|...|.++ ++++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 0001111223366778888898887 56788999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
.|+.|++||+++++++..+.+|...|.++.|++ .+|++++.|+.|++||+++++...........
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 394 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---------------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 394 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---------------SEEEEEETTSEEEEEETTTCCEEEEEECTTCC
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---------------CEEEEEeCCCcEEEEECCCCceeeeecCCCCc
Confidence 999999999999999999999999999999965 58999999999999999999888777765666
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE-eecCCCCeeEEEEeCCeE-EEEECCCeEEEEe
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA-HRVHTEPLSGLIFTQESV-LTVCREGHIKIWM 511 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~-~~~h~~~V~~l~fspd~l-~t~s~Dg~I~iW~ 511 (548)
..+.+++++ ..+..+. ++.+++||+.+.+++.. +..|...|.+++|+.+.+ ++++.||.+.+|-
T Consensus 395 ~~~~~~~~~------~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 395 AITTFYVSD------NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CEEEEEECS------SEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cEEEEEeCC------CEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 667777765 3555565 78899999999988875 677899999999998764 4556677665554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=303.21 Aligned_cols=289 Identities=15% Similarity=0.228 Sum_probs=233.1
Q ss_pred cCCCCCCceeEEeCCC---CC--EEEEecCCeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCC-CceEEEE
Q 008939 126 ASSSSTSMTNTNFDGK---GT--YIIFNVGDAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKD-GHDLLIG 194 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~---g~--~l~~~~~d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~-~~~l~~g 194 (548)
..+|...|.+++|+|+ +. +++++.++.|+|||+.++. .+..+.. +...+.+++|+|+... +.+|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3479999999999984 33 5555556699999999754 5555543 4467999999998543 5689999
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
+.||.|++||+.+ .+.+.. .. .|...|++++|+| ++. +|++++.||.|++||++..
T Consensus 92 ~~dg~i~v~d~~~-----~~~~~~-~~------~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~---------- 148 (366)
T 3k26_A 92 GSRGIIRIINPIT-----MQCIKH-YV------GHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTD---------- 148 (366)
T ss_dssp ETTCEEEEECTTT-----CCEEEE-EE------SCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTT----------
T ss_pred cCCCEEEEEEchh-----ceEeee-ec------CCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecC----------
Confidence 9999999999876 222221 11 3789999999999 666 9999999999999999862
Q ss_pred cccceeeeecCCCCCCCCeeEe---eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------
Q 008939 274 KDQTQFSVAHPRYSKSNPIARW---HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----------- 339 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------- 339 (548)
..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 149 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 149 ----------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp ----------------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred ----------------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 233444 56889999999999999999999999999999998765443332
Q ss_pred -----------------cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce--------------eEEeccCCCCCeEE
Q 008939 340 -----------------YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK--------------VVAWGEGHNSWVSG 388 (548)
Q Consensus 340 -----------------~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~--------------~~~~~~~h~~~V~~ 388 (548)
|...|.+++|+ +++|++++.|+.|++||+++++ .+..+..|...|.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC
T ss_pred cccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE
Confidence 88999999999 7799999999999999998764 37788889999999
Q ss_pred EEEecCCCCCCCC--CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 389 VAFDSYWSQPNSD--GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 389 v~~~p~~~~~~~d--g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
++|+| + + .+|++++.|+.|++||+.+++....
T Consensus 291 ~~~s~-------~~~~------~~l~~~~~dg~i~vwd~~~~~~~~~--------------------------------- 324 (366)
T 3k26_A 291 MRFSM-------DFWQ------KMLALGNQVGKLYVWDLEVEDPHKA--------------------------------- 324 (366)
T ss_dssp CCCEE-------CTTS------SEEEEECTTSCEEEEECCSSSGGGC---------------------------------
T ss_pred EEEcC-------CCCC------cEEEEEecCCcEEEEECCCCCCccc---------------------------------
Confidence 99999 8 7 7999999999999999988754321
Q ss_pred CceeecCCCCceEEeecC--CCCeeEEEEeCC--eEEEEECCCeEEEEeCC
Q 008939 467 PSMRDVPKLSPLVAHRVH--TEPLSGLIFTQE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h--~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~ 513 (548)
....+..| ...|++++|+|+ .|++++.||.|++||+.
T Consensus 325 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 ----------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 11233445 789999999997 49999999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=305.12 Aligned_cols=328 Identities=10% Similarity=0.097 Sum_probs=238.6
Q ss_pred CCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccC---CC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 127 SSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNS---QD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 127 ~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~---~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
.+|...|.+++|+| ++.++++++.| .|+|||+.+ +. .+....+. |...+.+++|+|+ +.+|++++.||.|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~l~s~s~dg~i 135 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPN---FDAFAVSSKDGQI 135 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCC---CCEEEEEeCCCEE
Confidence 57899999999999 99999999888 999999876 32 12344433 7889999999998 7899999999999
Q ss_pred EEEEeeeccccccc-----ceeeeeeeccCCcccCcceEEEE--EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 201 YSVSLRQQLQDVGK-----KLVGAHHYNKDGSVNNSRCTSVT--WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 201 ~iwdl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
++||++........ ..+....+.+.. +...+.++. +++++. +|++++.|+.|++||++.
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~----------- 201 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFG--KNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRT----------- 201 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGS--SCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTT-----------
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcc--cccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-----------
Confidence 99999631001000 011111222211 466778887 557777 999999999999999986
Q ss_pred cccceeeeecCCCCCCCCeeEeee--cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEc
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHI--CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWS 350 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~s 350 (548)
..++..+.. |...|++++|+|++++|++++.||.|++||+++++++..+. .|...|.+++|+
T Consensus 202 ---------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 202 ---------------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp ---------------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred ---------------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 245666766 78999999999999999999999999999999999988876 677899999665
Q ss_pred c----CCCEEEEEeCCCeEEEEECCCceeEEeccCC--------------------------CCCeEEEEEecCCCCCCC
Q 008939 351 M----DGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------------------------NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 351 p----dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------------------------~~~V~~v~~~p~~~~~~~ 400 (548)
| ++++|++|+.|+.|++||+++++++..+.+| ...|++++|++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~------- 339 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN------- 339 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET-------
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECC-------
Confidence 4 6789999999999999999999888777654 44566777763
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
+ .+|++++.|+.|++||+.++++...+..+. .....|........ ..+.. ..++......+..
T Consensus 340 -~------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~ 402 (437)
T 3gre_A 340 -D------KILLTDEATSSIVMFSLNELSSSKAVISPS-RFSDVFIPTQVTAN--LTMLL-------RKMKRTSTHSVDD 402 (437)
T ss_dssp -T------EEEEEEGGGTEEEEEETTCGGGCEEEECC---CCCEEEEEEEETT--EEEEE-------EECC---------
T ss_pred -c------eEEEecCCCCeEEEEECCCcccceEEeccc-ccCceEEEEEeecc--eEEEE-------EecccccccccCc
Confidence 3 589999999999999999999888776532 11222211110000 00000 0022222333444
Q ss_pred eecCCCCeeEEEEeCC----eEEEEECCCeEEEEe
Q 008939 481 HRVHTEPLSGLIFTQE----SVLTVCREGHIKIWM 511 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~ 511 (548)
...|.+.|++|+|+++ .|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5569999999999987 599999999999995
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=294.28 Aligned_cols=291 Identities=12% Similarity=0.143 Sum_probs=219.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC--------eEEEEEccCCCCCC------eEE--EecCCCCceEEEecCCCCCCceEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD--------AIFISDLNSQDKDP------IKS--IHFSNSNPVCHAFDQDAKDGHDLLI 193 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d--------~v~vwd~~~~~~~~------i~~--~~~~~~~~~~~~~~p~~~~~~~l~~ 193 (548)
+-+|++++|+|+|++|++++++ .|+||++....... ... +..+...+.|++++.+ .+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-----~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-----IILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-----EEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-----EEEE
Confidence 3579999999999999998653 49999998654211 222 3345667888888654 4555
Q ss_pred E-----------EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE--EeCCCcEEEEEc
Q 008939 194 G-----------LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV--GHADGNLYVYEK 260 (548)
Q Consensus 194 g-----------~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd~ 260 (548)
| ..|+.|++|++..... .........+.. ...+...+.+++|+|||+ +|++ ++.|+.|+|||+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVND--QLEFLTSVDFDA-STNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTT--EEEEEEEECSSC-CCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEET
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCc--eEEEeeeeceee-cCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeEC
Confidence 5 3567799999875211 111111111111 112456789999999999 5554 457899999999
Q ss_pred CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE--eee
Q 008939 261 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGK 338 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~ 338 (548)
.+. .++..+. |.+.|.+++|+|||++|++++.| .+++|+..+++.+. ...
T Consensus 165 ~~~--------------------------~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~ 216 (365)
T 4h5i_A 165 SDL--------------------------TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF 216 (365)
T ss_dssp TTT--------------------------EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred CCC--------------------------cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence 862 2233333 66889999999999999999855 56677776666543 345
Q ss_pred ecCCceEEEEEccCCCEEEEEeCCC----eEEEEECCCcee----EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 339 SYYGALLCCAWSMDGKYILTGGEDD----LVQVWSMEDRKV----VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 339 ~~~~~v~~l~~spdg~~l~sgs~dg----~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.|...|.+++|+|+++++++++.|+ .+++||+..... ...+.+|...|++++|+| || .+
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-------dg------~~ 283 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-------KG------EL 283 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-------TS------CE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-------CC------Cc
Confidence 6888999999999999999999887 688899876543 456778999999999999 99 79
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
|++++.|+.|+|||+++++++..+. .+|...|++
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~----------------------------------------------~gH~~~V~~ 317 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFK----------------------------------------------QAHSFAITE 317 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEET----------------------------------------------TSSSSCEEE
T ss_pred eEEEcCCCEEEEEECCCCcEEEEec----------------------------------------------CcccCCEEE
Confidence 9999999999999999988765432 369999999
Q ss_pred EEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 491 LIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 491 l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
|+|+||+ |+|++.|++||||+++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999984 9999999999999998654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=282.27 Aligned_cols=275 Identities=14% Similarity=0.172 Sum_probs=230.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
....+..|...|.+++|+|+ +.+|++++.||.|++|++... + ..... ..|...|.+++|+|+++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~-----~-~~~~~------~~h~~~v~~~~~~~~~~- 78 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYDG-----K-FEKTI------SGHKLGISDVAWSSDSN- 78 (312)
T ss_dssp EEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTC-----C-EEEEE------CCCSSCEEEEEECTTSS-
T ss_pred eEEEEcccCCcEEEEEECCC---CCEEEEeeCCCeEEEEeCCCc-----c-cchhh------ccCCCceEEEEEcCCCC-
Confidence 34556678889999999998 889999999999999998651 2 11111 13788999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.|+.|++||++. ...+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 79 ~l~s~~~d~~i~vwd~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSS--------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp EEEEEETTSEEEEEETTT--------------------------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred EEEEECCCCEEEEEECCC--------------------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 999999999999999986 245677888999999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. .+...+..++|+| ++
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~- 204 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-------NG- 204 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-------TS-
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-------CC-
Confidence 99999999999999999999999999999999999999999999999988877654 5677899999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||+++++++..+..
T Consensus 205 -----~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------------------------- 232 (312)
T 4ery_A 205 -----KYILAATLDNTLKLWDYSKGKCLKTYTG----------------------------------------------- 232 (312)
T ss_dssp -----SEEEEEETTTEEEEEETTTTEEEEEECS-----------------------------------------------
T ss_pred -----CEEEEEcCCCeEEEEECCCCcEEEEEEe-----------------------------------------------
Confidence 7899999999999999999887765543
Q ss_pred CCCCe--eEEEEe-CC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeec
Q 008939 484 HTEPL--SGLIFT-QE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 484 h~~~V--~~l~fs-pd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
|...+ ....|+ ++ .|++++.||.|++||+..... ....|...+. +++|++++|+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~ 299 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 299 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence 22211 122333 33 499999999999999987663 3346777776 78899999999863
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=294.48 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=226.0
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc------------CCcccCcceEEEEE
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK------------DGSVNNSRCTSVTW 238 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~l~~ 238 (548)
.|...+.|++|+|+ +.+|++|+ ++.+++|++... +.+.. ..... ....+...|++++|
T Consensus 62 ~h~~~V~~v~fspd---g~~la~g~-~~~v~i~~~~~g-----~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 62 DHTSVVCCVKFSND---GEYLATGC-NKTTQVYRVSDG-----SLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp ECSSCCCEEEECTT---SSEEEEEC-BSCEEEEETTTC-----CEEEE-ECC-----------------CCCCBEEEEEE
T ss_pred CCCCEEEEEEECCC---CCEEEEEc-CCcEEEEEecCC-----CEEEE-ecCccccccccccccccccCCCceeEEEEEE
Confidence 38889999999998 77888876 789999998752 11111 00000 00012345999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE
Q 008939 239 VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG 318 (548)
Q Consensus 239 ~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 318 (548)
+|++. +|++|+.|+.|++||+.. ...+..+.+|...|.+++|+|++++|++++
T Consensus 132 s~dg~-~l~s~~~d~~i~iwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 132 SPDGK-FLATGAEDRLIRIWDIEN--------------------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCC-EEEEEcCCCeEEEEECCC--------------------------CcEEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 99999 999999999999999976 234667788999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEec-------cCCCCCeEEEE
Q 008939 319 RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWG-------EGHNSWVSGVA 390 (548)
Q Consensus 319 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~-------~~h~~~V~~v~ 390 (548)
.|+.|++||++++++...+. +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred CCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 99999999999999887776 567799999999 8999999999999999999998887766 57999999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
|+| +| .+|++++.|+.|++||++..........
T Consensus 264 ~~~-------~g------~~l~s~s~d~~v~~wd~~~~~~~~~~~~---------------------------------- 296 (393)
T 1erj_A 264 FTR-------DG------QSVVSGSLDRSVKLWNLQNANNKSDSKT---------------------------------- 296 (393)
T ss_dssp ECT-------TS------SEEEEEETTSEEEEEEC---------------------------------------------
T ss_pred ECC-------CC------CEEEEEeCCCEEEEEECCCCCCcccccC----------------------------------
Confidence 999 98 7899999999999999987554321111
Q ss_pred ecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--Eec------CCCCceEe
Q 008939 471 DVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STS------SKDKPLLS 538 (548)
Q Consensus 471 d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s------~d~~~l~s 538 (548)
.........+.+|...|.+++|+|+ .|++++.|+.|++||+..+.. ....|...|. +++ |++++|++
T Consensus 297 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 297 -PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred -CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 0112234566789999999999996 499999999999999887663 3346777777 444 47889999
Q ss_pred eeccccc
Q 008939 539 SKVVTSS 545 (548)
Q Consensus 539 ~~~~g~~ 545 (548)
+...|.+
T Consensus 376 gs~Dg~i 382 (393)
T 1erj_A 376 GSGDCKA 382 (393)
T ss_dssp EETTSEE
T ss_pred ECCCCcE
Confidence 9877654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=307.46 Aligned_cols=291 Identities=13% Similarity=0.113 Sum_probs=221.9
Q ss_pred cCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..+|...|++++|+| ++.+|++++.| .|+|||+..+....+..+..|...|++++|+|. ++.+|++|+.||.|++|
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~--~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL--NTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS--CTTEEEEECSSSCEEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC--CCCEEEEEeCCCEEEEe
Confidence 356888999999999 46688888887 999999987654445555568899999999985 27799999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|++.. .+... .....+...+.+++|+|++. +|++|+.||.|++||++.
T Consensus 193 d~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--------------------- 240 (435)
T 4e54_B 193 DFKGN------ILRVF----ASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--------------------- 240 (435)
T ss_dssp ETTSC------EEEEE----ECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS---------------------
T ss_pred eccCC------ceeEE----eccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc---------------------
Confidence 98752 11110 01112456788999999999 999999999999999864
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE---eeeecCCceEEEEEccCCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
+.+..+..|...|.+++|+|++. +|++++.|+.|++||+++.+... ...+|...|.+++|+|+|++|+++
T Consensus 241 ------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~ 314 (435)
T 4e54_B 241 ------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314 (435)
T ss_dssp ------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred ------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence 23445667889999999999875 78899999999999998765433 335789999999999999999999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCC------CeEEEEEecCCCCCCCCCCccceeEEEEEEe------------CCCeEE
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNS------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVG------------QDTRLL 421 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~------------~Dg~i~ 421 (548)
+.|+.|+|||++++++...+..|.. .+....|+| ++ ..++++. .++.|+
T Consensus 315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-------RY------NLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-------SS------SCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-------CC------CEEEEEEcCCCCeEEEEecCCCEEE
Confidence 9999999999999887777765543 233456766 54 3444443 234677
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE-EEeCCe--E
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL-IFTQES--V 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l-~fspd~--l 498 (548)
+||+.+++++..+.. +|...|.++ +|+|++ |
T Consensus 382 iwd~~~g~~~~~l~~----------------------------------------------~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 382 VFDGNSGKMMCQLYD----------------------------------------------PESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp EECSSSCCEEEEECC----------------------------------------------SSCCCCCCEEEECTTSSCE
T ss_pred EEECCCCcEEEEEeC----------------------------------------------CCCCcEEEEEEECCCCCEE
Confidence 777777766544322 577888887 699985 6
Q ss_pred EEEECCCeEEEEeCCCCC
Q 008939 499 LTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~~~~~ 516 (548)
++| .|+.|+||++..++
T Consensus 416 asg-~d~~i~iW~~~~gk 432 (435)
T 4e54_B 416 ASA-MGYHILIWSQQEAR 432 (435)
T ss_dssp EEE-CSSEEEECCCC---
T ss_pred EEE-cCCcEEEEECCcCe
Confidence 655 58899999988654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=296.45 Aligned_cols=313 Identities=12% Similarity=0.143 Sum_probs=265.4
Q ss_pred cCCCCCCc-eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSM-TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v-~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
+.+|.+.+ .+ +.++|+++++++.| .|+|||+.++. .+..+..|...+.+++|+++ .|++|+.||.|++|
T Consensus 114 l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~-----~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 114 LKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN-----IIISGSTDRTLKVW 184 (445)
T ss_dssp EECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT-----EEEEEETTSCEEEE
T ss_pred ecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCc--EEEEEcCCCCCEEEEEecCC-----EEEEEeCCCeEEEE
Confidence 45677665 44 44568999998888 99999999854 88888889999999999843 89999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
|+.+. +.+. .. ..|...|.++.|++ . .|++++.||.|++||+..
T Consensus 185 d~~~~-----~~~~-~~------~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~--------------------- 228 (445)
T 2ovr_B 185 NAETG-----ECIH-TL------YGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIET--------------------- 228 (445)
T ss_dssp ETTTT-----EEEE-EE------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSS---------------------
T ss_pred ECCcC-----cEEE-EE------CCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCC---------------------
Confidence 98762 2221 11 13788999999963 4 799999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+
T Consensus 229 -----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 229 -----GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp -----CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred -----CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 2456677888999999999 7889999999999999999999999999999999999999 788999999999
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC----CC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG----PL 439 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~----~~ 439 (548)
.|++||+++++++..+.+|...+.++.+++ .+|++++.|+.|++||+++++++..+... ..
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELKD---------------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEET---------------TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEeC---------------CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 999999999999999999999999999864 48999999999999999999998888742 22
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe-----ecCCCCeeEEEEeCCe--EEEEECCCe----EE
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH-----RVHTEPLSGLIFTQES--VLTVCREGH----IK 508 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~-----~~h~~~V~~l~fspd~--l~t~s~Dg~----I~ 508 (548)
+..+.+. ...+..+..++.+++||+...+.+..+ ..|...|++++|+|++ |++++.||+ |.
T Consensus 365 v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 365 VTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp EEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred EEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 3333332 256788889999999999999988888 4788999999999985 889999998 99
Q ss_pred EEeCCCC
Q 008939 509 IWMRPGV 515 (548)
Q Consensus 509 iW~~~~~ 515 (548)
+||+...
T Consensus 437 v~df~~~ 443 (445)
T 2ovr_B 437 VLDFDVD 443 (445)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.23 Aligned_cols=297 Identities=18% Similarity=0.241 Sum_probs=234.0
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.++++.....+.....+++.|...|++++|+|+. +.+|++|+.||.|++||+........... . ....|..
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~--~~~l~S~s~D~~i~vWd~~~~~~~~~~~~-~------~l~~h~~ 87 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF--PDMILSASRDKTIIMWKLTRDETNYGIPQ-R------ALRGHSH 87 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTC--TTEEEEEETTSCEEEEEECCSSSCSEEEE-E------EECCCSS
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCC--CCEEEEEcCCCeEEEEECCCCCcccceee-E------EEeCCCC
Confidence 4555555443333455688899999999999973 56899999999999999986321111111 1 1124889
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|++++|+|++. +|++++.|+.|++|+.... ........+...+..+.+++++
T Consensus 88 ~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~ 140 (340)
T 4aow_A 88 FVSDVVISSDGQ-FALSGSWDGTLRLWDLTTG--------------------------TTTRRFVGHTKDVLSVAFSSDN 140 (340)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEETTTT--------------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEECCCCC-EEEEEcccccceEEeeccc--------------------------ceeeeecCCCCceeEEEEeecC
Confidence 999999999999 9999999999999998752 2234445566888999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
++|++++.|+.+++||+..... ......|...+.+++|++++ .++++++.|+.|++||+++++++..+.+|...|++
T Consensus 141 ~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~ 220 (340)
T 4aow_A 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220 (340)
T ss_dssp SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEE
Confidence 9999999999999999976644 44567788999999999875 47889999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
++|+| ++ .+|++++.|+.|++||+++.+++..+..
T Consensus 221 ~~~s~-------~~------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-------------------------------- 255 (340)
T 4aow_A 221 VTVSP-------DG------SLCASGGKDGQAMLWDLNEGKHLYTLDG-------------------------------- 255 (340)
T ss_dssp EEECT-------TS------SEEEEEETTCEEEEEETTTTEEEEEEEC--------------------------------
T ss_pred EEECC-------CC------CEEEEEeCCCeEEEEEeccCceeeeecC--------------------------------
Confidence 99999 98 7999999999999999998887654432
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcc-----------ccCCCCcEE--EecCCCC
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAES-----------QSSSSETVL--STSSKDK 534 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~-----------~~~~~~~v~--~~s~d~~ 534 (548)
...|..+.|+|+. +++++.|+.|++||+++.... ...|...|. +++||++
T Consensus 256 ----------------~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 256 ----------------GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ----------------SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred ----------------CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 4579999999974 889999999999998875421 124556666 7899999
Q ss_pred ceEeeeccccc
Q 008939 535 PLLSSKVVTSS 545 (548)
Q Consensus 535 ~l~s~~~~g~~ 545 (548)
+|+++...|.+
T Consensus 320 ~l~sgs~Dg~v 330 (340)
T 4aow_A 320 TLFAGYTDNLV 330 (340)
T ss_dssp EEEEEETTSCE
T ss_pred EEEEEeCCCEE
Confidence 99999887755
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=303.98 Aligned_cols=329 Identities=11% Similarity=0.154 Sum_probs=246.9
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..|...+.+++|+|++.+|++++.| .|+|||+.... .+.+..+..|...+.+++|+|+. +.+|++++.||.|++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEE
Confidence 3578899999999999999998877 99999998721 23677788899999999999972 5689999999999999
Q ss_pred Eeeeccccccc-ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGK-KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++........ .... ......|...|++++|+|++..+|++++.||.|++||++..
T Consensus 142 d~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------------- 198 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLT----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------------------- 198 (416)
T ss_dssp BTTTTSSCTTTCCCBC----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-------------------
T ss_pred ECCCCccccccccccc----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-------------------
Confidence 99863100000 1110 01112478899999999995449999999999999999862
Q ss_pred cCCCCCCCCeeEeeec------CCCeEEEEECCCC-CEEEEEECCC---eEEEEeCCCC-eEEEeee-ecCCceEEEEEc
Q 008939 283 HPRYSKSNPIARWHIC------QGSINSIAFSTDG-TYLATVGRDG---YLRVFDYSKE-QLICGGK-SYYGALLCCAWS 350 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h------~~~v~~~~~sp~g-~~l~s~~~dg---~v~vwd~~~~-~~~~~~~-~~~~~v~~l~~s 350 (548)
..+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++++ +.+..+. +|...|.+++|+
T Consensus 199 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 199 -------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp -------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC
T ss_pred -------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC
Confidence 223333333 6889999999986 6899999998 9999999986 5667777 899999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 351 M-DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 351 p-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
| ++++|++++.|+.|++||+++++++..+.+|...|.+++|+| ++. .+|++++.|+.|++||+....
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-------~~~-----~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-------EAP-----DLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-------TCT-----TEEEECCSSSEEEEEESCCCC
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-------CCC-----CEEEEEecCCcEEEEEccCCC
Confidence 9 999999999999999999999999999999999999999999 762 489999999999999999876
Q ss_pred EEeeeecC---CCCC-CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC
Q 008939 430 IVVPLRRG---PLGG-SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR 503 (548)
Q Consensus 430 ~~~~~~~~---~~~~-~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~ 503 (548)
........ .... ...+...+ .+..+. ....+. . .....|..++++++|+|++ |++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~-----~-~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 340 NTLDEQETETKQQESETDFWNNVS-------REESKE---KPSVFH-----L-QAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CSSCC-----------------------------CCS---CCCSSC-----C-CCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred CCcccccccccccCCccccccccc-------cccccc---cccccc-----c-cCCccccCCccceEEeeCCeEEEEeCC
Confidence 54332110 0000 00010000 000000 000011 1 2223478889999999984 889999
Q ss_pred CCeEEEEeCCCC
Q 008939 504 EGHIKIWMRPGV 515 (548)
Q Consensus 504 Dg~I~iW~~~~~ 515 (548)
|+.|+||++.++
T Consensus 404 d~~v~~w~~~~~ 415 (416)
T 2pm9_A 404 GKGVSITNPKIS 415 (416)
T ss_dssp SSCBCCBCCCCC
T ss_pred CCeEEEEEeccC
Confidence 999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.70 Aligned_cols=341 Identities=13% Similarity=0.126 Sum_probs=255.0
Q ss_pred EEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-ecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 136 TNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
..|+|++..++... .|+.. .+.+..+ ..|...|++++|+| + +.+|++|+.||.|++||+........
T Consensus 33 ~~f~~~~~~~~~~~-----~w~~~---g~~~~~~~~~h~~~V~~~~~s~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGNLR---GKLIATLMENEPNSITSSAVSPGE---TPYLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGGCC---CCEEEEECTTTTSCEEEEEEECSS---SCEEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hhcCCccccccccc-----ccccc---ceEEeeeccCCCCceEEEEECCCC---CCEEEEecCCceEEEeECcccccCcc
Confidence 35677777766544 37744 3477787 77889999999999 7 78999999999999999876211110
Q ss_pred cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC--CCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
....... .|...|++++|+|++. +|++++.||.|++||++. .+....... ...
T Consensus 102 ~~~~~~~-------~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~ 156 (437)
T 3gre_A 102 YSSSLTY-------DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLN-----------------CEC 156 (437)
T ss_dssp CSCSEEE-------ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEE-----------------EEE
T ss_pred cceeeec-------cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccc-----------------cce
Confidence 1111111 2789999999999998 999999999999999962 111110000 001
Q ss_pred eeEee--e--cCCCeEEEE--ECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCC
Q 008939 292 IARWH--I--CQGSINSIA--FSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 292 ~~~~~--~--h~~~v~~~~--~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
+..+. . +...+.++. +++++++|++++.|+.|++||+++++++..+.. |...|.+++|+|++++|++|+.|+
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 22222 1 456788887 668999999999999999999999999999888 889999999999999999999999
Q ss_pred eEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCC
Q 008939 364 LVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGG 441 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~ 441 (548)
.|++||+++++++..+. .|...|.+++|+|.+++ ++ .+|++++.|+.|++||+++++++..+... ....
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~---~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 307 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK---NS------VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS 307 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT---TE------EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccCC---Cc------cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc
Confidence 99999999999998876 78889999988773322 56 79999999999999999999999888753 2334
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec--CCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV--HTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES 518 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~--h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~ 518 (548)
...+.+++... .-..+.+ |...|++++|+++ .|++++.|+.|++||+...+..
T Consensus 308 ~~~~~~~~~~l------------------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 308 MEHFLPIEKGL------------------------EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGGGSCBCSSG------------------------GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred cceeccccccc------------------------ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccc
Confidence 44444443111 0001234 8889999999965 4999999999999998876522
Q ss_pred c--cC-------------------------------------CCCcEE--EecCC--CCceEeeeccccc
Q 008939 519 Q--SS-------------------------------------SSETVL--STSSK--DKPLLSSKVVTSS 545 (548)
Q Consensus 519 ~--~~-------------------------------------~~~~v~--~~s~d--~~~l~s~~~~g~~ 545 (548)
. .. |...|. +++++ +.+|++++..|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 1 11 566666 55666 7789999888765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=280.25 Aligned_cols=254 Identities=17% Similarity=0.247 Sum_probs=210.3
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|+|++|++++.| +|+|||+.....+.+..+..|...|.+++|+++. ++.+|++|+.||.|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEE
Confidence 356899999999999999999999988 9999999865446788999999999999998641 16789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..+.. . ..|...|++++|+|+ +. +|++++.|+.|++||++....
T Consensus 83 d~~~~~~---~~~~~-~------~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~---------------- 135 (297)
T 2pm7_B 83 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGT---------------- 135 (297)
T ss_dssp EBSSSCB---CCCEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSC----------------
T ss_pred EcCCCce---EEEEE-e------ecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCc----------------
Confidence 9975210 11111 1 137889999999997 66 999999999999999975211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC-------------CCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD-------------GTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-------------g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v 344 (548)
.....+..|...|.+++|+|+ +++|++++.|+.|++||+++++ ++..+.+|...|
T Consensus 136 --------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 136 --------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp --------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred --------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 112456778899999999996 5799999999999999998765 566788999999
Q ss_pred EEEEEccCC---CEEEEEeCCCeEEEEECCCce---eEEec--cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMDG---KYILTGGEDDLVQVWSMEDRK---VVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~---~~~~~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|++ ++|++++.|+.|+|||+++.. ....+ ..|...|.+++|+| +| .+|++++.
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~las~~~ 274 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 274 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-------SS------CCEEEEET
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-------CC------CEEEEEcC
Confidence 999999995 799999999999999998742 22233 56889999999999 98 78999999
Q ss_pred CCeEEEEECCC
Q 008939 417 DTRLLLWDLEM 427 (548)
Q Consensus 417 Dg~i~lwd~~~ 427 (548)
|+.|+||+...
T Consensus 275 D~~v~lw~~~~ 285 (297)
T 2pm7_B 275 DNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 99999999863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=292.93 Aligned_cols=318 Identities=16% Similarity=0.191 Sum_probs=246.5
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee-eccCCccc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH-YNKDGSVN 229 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~-~~~~~~~~ 229 (548)
.++||+++... ....+..|...+.+++|+| + +.+|++|+.||.|++||+................ .......|
T Consensus 24 ~~~v~~~~~~~--~~~~~~~h~~~v~~~~~s~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 24 TRRVLGLELNK--DRDVERIHGGGINTLDIEPVE---GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHTEEECT--TEEECCCCSSCEEEEEECTTT---CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cceeeccccCc--ceeeeeccCCcEEEEEEecCC---CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 67788888744 7778888999999999999 7 7899999999999999998732111111000000 01112248
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...|++++|+|++..+|++++.||.|++||+... ..+..+. +...+.++.|++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------------------~~~~~~~-~~~~~~~~~~~~ 151 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------------------------QTADVFN-FEETVYSHHMSP 151 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------------------------EEEEEEE-CSSCEEEEEECS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------------------------ccceecc-CCCceeeeEeec
Confidence 8999999999954448999999999999999862 1222222 557899999998
Q ss_pred C---CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCce-eEEec-----
Q 008939 310 D---GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRK-VVAWG----- 379 (548)
Q Consensus 310 ~---g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~-~~~~~----- 379 (548)
. +.++++++.|+.|++||+++++.+..+..|...|.+++|+|+++ +|++++.|+.|++||++++. ++..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 4 45999999999999999999999999999999999999999998 58999999999999998765 33333
Q ss_pred ----------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC---CCceec
Q 008939 380 ----------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG---GSPTFS 446 (548)
Q Consensus 380 ----------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~---~~~~~~ 446 (548)
..|...|.+++|+| ++ .+|++++.|+.|++||+++++....+...... ....+.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTS-------DG------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred ccceeeccccccccCceeEEEEcC-------CC------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeE
Confidence 57899999999999 88 79999999999999999998875544321110 111110
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCc
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAE 517 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~ 517 (548)
........+..+..++.+++||+...+++..+.+|...|++++|+|++ |++++.||.|++|++...+.
T Consensus 299 ---~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 299 ---VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp ---ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ---EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 011223445566678899999999999999999999999999999974 99999999999999987653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=278.41 Aligned_cols=258 Identities=16% Similarity=0.269 Sum_probs=204.9
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCc
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDG 244 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~ 244 (548)
..+..|...|.+++|+|+ +.+|++|+.|+.|++||+.... .+ ..... ..|...|++++|+|+ +.
T Consensus 3 ~~~~~h~~~V~~~~~s~~---g~~las~s~D~~v~iw~~~~~~---~~-~~~~l------~gH~~~V~~v~~s~~~~g~- 68 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYY---GKRMATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFGT- 68 (297)
T ss_dssp EECCSCSSCEEEEEECTT---SSEEEEEETTSCEEEEEBCSSC---BC-CCEEE------CCCSSCEEEEEECCGGGCS-
T ss_pred eeccCCcCceEEEEECCC---CCEEEEEeCCCEEEEEecCCCC---cE-EEEEE------ccccCCeEEEEecCCCcCC-
Confidence 345568889999999998 8899999999999999987411 11 11111 248999999999864 66
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~ 322 (548)
+|++|+.|++|++||++... ...+..+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~------------------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSC------------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEcCCCEEEEEEcCCCc------------------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 99999999999999997521 1234556678899999999997 899999999999
Q ss_pred EEEEeCCCCe--EEEeeeecCCceEEEEEccC-------------CCEEEEEeCCCeEEEEECCCce----eEEeccCCC
Q 008939 323 LRVFDYSKEQ--LICGGKSYYGALLCCAWSMD-------------GKYILTGGEDDLVQVWSMEDRK----VVAWGEGHN 383 (548)
Q Consensus 323 v~vwd~~~~~--~~~~~~~~~~~v~~l~~spd-------------g~~l~sgs~dg~I~vwd~~~~~----~~~~~~~h~ 383 (548)
|++||++++. ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++ .+..+.+|.
T Consensus 125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~ 204 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (297)
T ss_dssp EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence 9999998763 23567789999999999997 5799999999999999998765 667889999
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeeccc
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 463 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 463 (548)
..|.+++|+| ++. ...+|++++.|+.|+|||++..........
T Consensus 205 ~~V~~v~~sp-------~~~---~~~~las~s~D~~v~iWd~~~~~~~~~~~~--------------------------- 247 (297)
T 2pm7_B 205 DWVRDVAWSP-------TVL---LRSYMASVSQDRTCIIWTQDNEQGPWKKTL--------------------------- 247 (297)
T ss_dssp SCEEEEEECC-------CCS---SSEEEEEEETTSCEEEEEESSTTSCCEEEE---------------------------
T ss_pred CceEEEEECC-------CCC---CceEEEEEECCCcEEEEEeCCCCCccceee---------------------------
Confidence 9999999999 630 016899999999999999876421000000
Q ss_pred CCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 464 ~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.....|...|.+++|+|++ |++++.|+.|+||+...
T Consensus 248 ---------------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 ---------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ---------------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ---------------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 0012467889999999974 99999999999999753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=289.81 Aligned_cols=278 Identities=15% Similarity=0.271 Sum_probs=227.3
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL 209 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~ 209 (548)
-...++|+++ .+|+++.+++|+|||+.++. .+..+. .+...|+|++|+|+ +.+|++|+.||.|++||+++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd---g~~lasgs~Dg~v~iWd~~~-- 178 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLWDVQQ-- 178 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSCEEEEETTT--
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC---CCEEEEEECCCeEEEEEcCC--
Confidence 3457999975 58888887899999999865 555444 45678999999998 88999999999999999986
Q ss_pred cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++.+.. . ..|...+.++.|++ . +|++|+.|+.+++||.... .
T Consensus 179 ---~~~~~~-~------~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~-------------------------~ 220 (420)
T 4gga_A 179 ---QKRLRN-M------TSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVA-------------------------E 220 (420)
T ss_dssp ---TEEEEE-E------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSS-------------------------S
T ss_pred ---CcEEEE-E------eCCCCceEEEeeCC--C-EEEEEeCCCceeEeeeccc-------------------------c
Confidence 222221 1 13788899988864 4 8999999999999998752 3
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCceEEEEEccCCC-EEEE--EeCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGALLCCAWSMDGK-YILT--GGED 362 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~l~~spdg~-~l~s--gs~d 362 (548)
..+..+..|...+..+.|+|+++++++++.|+.+++||..+++ .+.....|...|.+++|+|++. ++++ |+.|
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 4567788899999999999999999999999999999998765 3455677889999999999765 5554 4579
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--CCCeEEEEECCCCeEEeeeecCCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--QDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
+.|++||+++++++..+.. ...|.++.|+| ++ ..+++++ .|+.|+|||+.+++++..
T Consensus 301 ~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~-------~~------~~lv~~sg~~d~~I~iwd~~~~~~v~~------- 359 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDA-HSQVCSILWSP-------HY------KELISGHGFAQNQLVIWKYPTMAKVAE------- 359 (420)
T ss_dssp CEEEEEETTTTEEEEEEEC-SSCEEEEEEET-------TT------TEEEEEECTTTCCEEEEETTTCCEEEE-------
T ss_pred CEEEEEeCCccccceeecc-ccceeeeeecC-------CC------CeEEEEEecCCCEEEEEECCCCcEEEE-------
Confidence 9999999999999988874 46788999999 77 3555543 799999999998776543
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
+.+|.+.|++|+|+||+ |+||+.|++|+|||+....
T Consensus 360 ----------------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 360 ----------------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ----------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ----------------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 45699999999999984 9999999999999986543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=288.94 Aligned_cols=279 Identities=15% Similarity=0.235 Sum_probs=229.8
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++ +.+++.+.++.|+|||+.++. .+..+.. +...+.+++|+|+ +.+|++|+.||.|++||+.+
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~~dg~i~iwd~~~---- 165 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSGS--VSALAETDESTYVASVKWSHD---GSFLSVGLGNGLVDIYDVES---- 165 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTT---SSEEEEEETTSCEEEEETTT----
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCC---CCEEEEECCCCeEEEEECcC----
Confidence 45577775 345555555599999999855 5555555 6788999999998 88999999999999999876
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
.+.+.. . ..|...|.+++|++ . +|++++.||.|++||++.. ...
T Consensus 166 -~~~~~~-~------~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~-------------------------~~~ 209 (401)
T 4aez_A 166 -QTKLRT-M------AGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIA-------------------------NHQ 209 (401)
T ss_dssp -CCEEEE-E------CCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSS-------------------------SCE
T ss_pred -CeEEEE-e------cCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccC-------------------------cce
Confidence 222211 1 13789999999953 4 8999999999999999852 244
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEe--CCCeEEEE
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGG--EDDLVQVW 368 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs--~dg~I~vw 368 (548)
+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 677788999999999999999999999999999999999999999999999999999999775 566655 79999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE--eCCCeEEEEECCCCeEEeeeecCCCCCCceec
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV--GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFS 446 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~--~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 446 (548)
|+++++++..+. |...|.+++|+| ++ ..|+++ +.|+.|++||+.+++.....
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~-------~~------~~l~~~~g~~dg~i~v~~~~~~~~~~~~------------ 343 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSP-------HS------KEIMSTHGFPDNNLSIWSYSSSGLTKQV------------ 343 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECS-------SS------SEEEEEECTTTCEEEEEEEETTEEEEEE------------
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECC-------CC------CeEEEEeecCCCcEEEEecCCccceeEE------------
Confidence 999999988887 778899999999 88 577774 38999999999887654322
Q ss_pred CCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 447 TGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 447 ~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+.+|...|.+++|+|++ |++++.||.|++|++..++
T Consensus 344 ---------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 344 ---------------------------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ---------------------------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ---------------------------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 235788999999999984 9999999999999998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=296.59 Aligned_cols=314 Identities=13% Similarity=0.084 Sum_probs=245.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+++++|+|+ +.+|++++.||.|++||+.... ....+ . ....+....|+|++. +|++++.||.
T Consensus 58 ~~~~~~~s~~---g~~l~~~~~d~~v~i~d~~~~~--~~~~~----------~-~~~~~~~~~~~~~~~-~l~~~~~dg~ 120 (420)
T 3vl1_A 58 AGKGNTFEKV---GSHLYKARLDGHDFLFNTIIRD--GSKML----------K-RADYTAVDTAKLQMR-RFILGTTEGD 120 (420)
T ss_dssp CCTTCEEEEE---ETTEEEEEETTEEEEEECCSEE--TTTTS----------C-SCCEEEEEEECSSSC-EEEEEETTSC
T ss_pred cccceeeeec---CCeEEEEEcCCcEEEEEecccc--eeeEE----------e-cCCceEEEEEecCCC-EEEEEECCCC
Confidence 3557899999 8889999999999999987621 11111 0 123445557889988 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|++||+... ..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 121 i~iwd~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 121 IKVLDSNFN--------------------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174 (420)
T ss_dssp EEEECTTSC--------------------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC
T ss_pred EEEEeCCCc--------------------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc
Confidence 999998752 234455678899999999999999999999999999999999999
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC---CCCCeEEEEEecCCCC--------------
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG---HNSWVSGVAFDSYWSQ-------------- 397 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~---h~~~V~~v~~~p~~~~-------------- 397 (548)
..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. |...|.+++|.|.-..
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 99999999999999999999999999999999999999998888874 5566777766431000
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
-.++| .+|++++.|+.|++||+++++.+..+... ..+..+.|++++ ...+..+..++.+++||+...
T Consensus 255 ~s~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 255 FGTYG------KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN-----ANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCTT------EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCT
T ss_pred EcCCC------CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC-----CCEEEEEeCCCeEEEEEcCCC
Confidence 01177 79999999999999999999888777542 446677777765 126788889999999999887
Q ss_pred C-ceEEeec-CCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCc-----------cccCCCCcEE--EecCCCC---ce
Q 008939 476 S-PLVAHRV-HTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAE-----------SQSSSSETVL--STSSKDK---PL 536 (548)
Q Consensus 476 ~-~~~~~~~-h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~-----------~~~~~~~~v~--~~s~d~~---~l 536 (548)
. ++..+.. |...|+.+.|.+. .|++++.|+.|++|++..... ....+...+. +++||++ .|
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l 403 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV 403 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred cCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE
Confidence 4 4777777 6788999987765 489999999999999876321 1123444443 7889999 44
Q ss_pred Eeeecc
Q 008939 537 LSSKVV 542 (548)
Q Consensus 537 ~s~~~~ 542 (548)
++.+..
T Consensus 404 ~a~g~~ 409 (420)
T 3vl1_A 404 LEVGKN 409 (420)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 444433
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=306.69 Aligned_cols=282 Identities=20% Similarity=0.244 Sum_probs=229.5
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..|...|+|++|+|+. ..+|++|+.||.|++||+......... .... ...|...|++++|+|++. +|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~--~~~l~s~s~D~~i~~W~~~~~~~~~~~-~~~~------~~~h~~~v~~v~~s~~g~-~l 445 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDN--ADIIVSASRDKSIILWKLTKDDKAYGV-AQRR------LTGHSHFVEDVVLSSDGQ-FA 445 (694)
T ss_dssp EEEECCSSCEEEEECCTTC--CSEEEEEETTSEEEEEECCCSTTCSCE-EEEE------EECCSSCEEEEEECTTSS-EE
T ss_pred hhcccCCceeEEEEecCCC--CCEEEEEeCCCcEEEEEccCCCccccc-ccce------ecCCCCcEEEEEECCCCC-EE
Confidence 4577899999999999873 468999999999999999762111111 1111 124899999999999999 99
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
++|+.||.|+|||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 446 ~sgs~Dg~v~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAA--------------------------GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp EEEETTSEEEEEETTT--------------------------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEeCCCcEEEEECCC--------------------------CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 9999999999999976 23466788899999999999999999999999999999
Q ss_pred eCCCCeEEEe---eeecCCceEEEEEccCC--CEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 327 DYSKEQLICG---GKSYYGALLCCAWSMDG--KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 327 d~~~~~~~~~---~~~~~~~v~~l~~spdg--~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
|+........ ..+|...|.+++|+|++ ..|++++.|+.|++||+++++++..+.+|...|++++|+| +
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-------d 572 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-------D 572 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-------T
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-------C
Confidence 9875543322 24688899999999987 5899999999999999999999999999999999999999 9
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
| .+|++++.|+.|++||+++++++..+.
T Consensus 573 g------~~l~sg~~Dg~i~iwd~~~~~~~~~~~---------------------------------------------- 600 (694)
T 3dm0_A 573 G------SLCASGGKDGVVLLWDLAEGKKLYSLE---------------------------------------------- 600 (694)
T ss_dssp S------SEEEEEETTSBCEEEETTTTEEEECCB----------------------------------------------
T ss_pred C------CEEEEEeCCCeEEEEECCCCceEEEec----------------------------------------------
Confidence 8 799999999999999999988764332
Q ss_pred ecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCcccc--C-------------------CCCcE--EEecCCCCceE
Q 008939 482 RVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQS--S-------------------SSETV--LSTSSKDKPLL 537 (548)
Q Consensus 482 ~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~~--~-------------------~~~~v--~~~s~d~~~l~ 537 (548)
+...|.+++|+|+. +++++.|+.|+|||+.+...... . +...+ ++++||+++|+
T Consensus 601 --~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 601 --ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp --CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred --CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 23568999999985 67777788899999987652110 0 00112 37899999999
Q ss_pred eeeccccc
Q 008939 538 SSKVVTSS 545 (548)
Q Consensus 538 s~~~~g~~ 545 (548)
++...|.+
T Consensus 679 sgs~Dg~i 686 (694)
T 3dm0_A 679 SGYTDGVI 686 (694)
T ss_dssp EEETTSEE
T ss_pred EEcCCCeE
Confidence 99888765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=283.62 Aligned_cols=310 Identities=20% Similarity=0.266 Sum_probs=256.6
Q ss_pred CCCeEEEecCCCCc-eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC
Q 008939 163 KDPIKSIHFSNSNP-VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG 241 (548)
Q Consensus 163 ~~~i~~~~~~~~~~-~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 241 (548)
.+....+..|...+ .|+.++ +.+|++|+.||.|++||+.+ ++.+. .. ..|...|.+++|+
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~-----g~~l~sg~~dg~i~vwd~~~-----~~~~~-~~------~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAVT-----GKCLR-TL------VGHTGGVWSSQMR-- 168 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEE-----TTEEEEEETTSCEEEEETTT-----CCEEE-EC------CCCSSCEEEEEEE--
T ss_pred cceeEEecccCCCcEEEEEEc-----CCEEEEEECCCcEEEEECCC-----CcEEE-EE------cCCCCCEEEEEec--
Confidence 34566777787764 565554 66899999999999999876 22221 11 2488999999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 242 GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 242 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+. +|++++.||.|++||+.+ .+.+..+..|...|.+++|+ +++|++++.||
T Consensus 169 ~~-~l~s~~~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 219 (445)
T 2ovr_B 169 DN-IIISGSTDRTLKVWNAET--------------------------GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDA 219 (445)
T ss_dssp TT-EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred CC-EEEEEeCCCeEEEEECCc--------------------------CcEEEEECCCCCcEEEEEec--CCEEEEEeCCC
Confidence 34 899999999999999986 23466777889999999995 56899999999
Q ss_pred eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
.|++||+++++.+..+..|...|.+++| ++++|++|+.|+.|++||+++++++..+.+|...|.++.|+
T Consensus 220 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------- 288 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------- 288 (445)
T ss_dssp EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---------
T ss_pred EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC---------
Confidence 9999999999999999999999999999 78899999999999999999999999999999999999994
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ .++++++.|+.|++||+++++++..+..+. .....+..+ ...+..+..++.+++||+...+++..+
T Consensus 289 ~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 289 G------IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK------DNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp S------SEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEE------TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred C------CEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEEEEEEe------CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 3 589999999999999999999988876532 222222222 346788889999999999999999998
Q ss_pred ec---CCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCccc-------cCCCCcEE--EecCCCCceEeeecccc
Q 008939 482 RV---HTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQ-------SSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 482 ~~---h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~-------~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
.. |...|++++|+++.|++++.||.|++||+..++... ..+...+. +++|++.+|+++...|.
T Consensus 356 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred ccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 87 889999999999999999999999999998776321 24555565 78899999999988775
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=308.33 Aligned_cols=352 Identities=14% Similarity=0.136 Sum_probs=269.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|...|.+++|+|++.+|++++.+ .|+|||+.++. .+..+..|...+.+++|+|+ +.+|++++.||.|++||
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSS---SSEEEEEETTSEEEEEE
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEEEEEEeCC---CCEEEEEcCCCEEEEEE
Confidence 34688999999999999999998887 99999999854 88888889999999999999 78899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++.. ........ .|...|.+++|+| ++. .|++++.||.|++||+...
T Consensus 126 ~~~~-----~~~~~~~~------~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~-------------------- 173 (814)
T 3mkq_A 126 WENN-----WALEQTFE------GHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQS-------------------- 173 (814)
T ss_dssp GGGT-----SEEEEEEE------CCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCS--------------------
T ss_pred CCCC-----ceEEEEEc------CCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--------------------
Confidence 8762 12222111 3788999999999 666 9999999999999999752
Q ss_pred CCCCCCCCeeEeeec-CCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 284 PRYSKSNPIARWHIC-QGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h-~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
.+...+..+ ...+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++
T Consensus 174 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 174 ------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp ------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred ------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 122333333 38899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec----
Q 008939 361 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR---- 436 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~---- 436 (548)
.|+.|++||+.+++.+..+..|...|.+++|+| +|. ..+++++.|+.+.+|++........+..
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 315 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP-------TGR-----KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKL 315 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEEEECT-------TCG-----GGEEEEEETTEEEEEECSCCSCCEEECSSSEE
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc-------CCC-----ceEEEEEeCCCEEEEEcCCCCceeEECCCCCE
Confidence 999999999999999999999999999999999 872 2345556678899999865432221110
Q ss_pred ----------------------------------------CCCCCCceecCCCCc--cccCC------------------
Q 008939 437 ----------------------------------------GPLGGSPTFSTGSQS--AHWDN------------------ 456 (548)
Q Consensus 437 ----------------------------------------~~~~~~~~~~~~~~~--~~~d~------------------ 456 (548)
...+..+.+++++.. ...+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i 395 (814)
T 3mkq_A 316 VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKC 395 (814)
T ss_dssp EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCce
Confidence 012344555555530 00011
Q ss_pred ----------eeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-----eEEEEECCCeEEEEeCCCCCcc-cc
Q 008939 457 ----------VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-----SVLTVCREGHIKIWMRPGVAES-QS 520 (548)
Q Consensus 457 ----------~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-----~l~t~s~Dg~I~iW~~~~~~~~-~~ 520 (548)
.+.++..++.+.+|+ .+.+|...|..+.|+|+ .|++++.|+.|++||+..+... ..
T Consensus 396 ~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 467 (814)
T 3mkq_A 396 QDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI 467 (814)
T ss_dssp SEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEE
Confidence 112222233333332 33467778888889997 4788899999999998766532 22
Q ss_pred CCCCcEEEecCCCCceEeee
Q 008939 521 SSSETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 521 ~~~~~v~~~s~d~~~l~s~~ 540 (548)
.....-++|+||+++|+++.
T Consensus 468 ~~~~~~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 468 DVNAKDVIWSDNGELVMIVN 487 (814)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred ecCCCEEEEcCCCCEEEEEE
Confidence 22223568999999999883
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=286.12 Aligned_cols=286 Identities=16% Similarity=0.246 Sum_probs=233.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|...|.++.| +++++++++.| .|++||+.++. .+..+..|...+.+++| + +.+|++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~---~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--D---ERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--C---SSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--C---CCEEEEEcCCCeEEEEEC
Confidence 346667888877 78899998887 99999999854 88888889999999999 3 669999999999999999
Q ss_pred eecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 206 RQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
++. +.+. .. ..|...|.+++|++ . +|++++.||.|++||+.....
T Consensus 201 ~~~-----~~~~-~~------~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~-------------------- 245 (435)
T 1p22_A 201 NTG-----EMLN-TL------IHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTD-------------------- 245 (435)
T ss_dssp SSC-----CEEE-EE------CCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSC--------------------
T ss_pred CCC-----cEEE-EE------cCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCC--------------------
Confidence 862 2221 11 13788999999974 3 899999999999999986321
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
......+..|...|.+++| ++++|++++.||.|++||+++++.+..+..|...|.+++|+ +++|++|+.|+.|
T Consensus 246 ---~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i 318 (435)
T 1p22_A 246 ---ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318 (435)
T ss_dssp ---CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred ---ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeE
Confidence 1122556778899999999 78899999999999999999999999999999999999994 6799999999999
Q ss_pred EEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCcee
Q 008939 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 445 (548)
++||+++++++..+.+|...|.+++|++ .+|++++.||.|++||+++++....
T Consensus 319 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~---------------~~l~sg~~dg~i~vwd~~~~~~~~~------------ 371 (435)
T 1p22_A 319 RLWDIECGACLRVLEGHEELVRCIRFDN---------------KRIVSGAYDGKIKVWDLVAALDPRA------------ 371 (435)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEECCS---------------SEEEEEETTSCEEEEEHHHHTSTTS------------
T ss_pred EEEECCCCCEEEEEeCCcCcEEEEEecC---------------CEEEEEeCCCcEEEEECCCCCCccc------------
Confidence 9999999999999999999999999943 5899999999999999875431100
Q ss_pred cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC
Q 008939 446 STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 446 ~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.....++..+.+|...|++++|.+..|++++.||.|++||+....
T Consensus 372 --------------------------~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 372 --------------------------PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp --------------------------CTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred --------------------------cccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 001113456678999999999977789999999999999987754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=281.10 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=232.0
Q ss_pred cCCCCceEEEecCCCCC-CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----CCcE
Q 008939 171 FSNSNPVCHAFDQDAKD-GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----GDGA 245 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~-~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~~~~ 245 (548)
.|...|.+++|+|+.++ ...+++++.++.|++||+... +.+.....+. ...|...|++++|+|+ +. +
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-----~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~-~ 87 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-----GEIRLLQSYV--DADADENFYTCAWTYDSNTSHP-L 87 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-----GCEEEEEEEE--CSCTTCCEEEEEEEECTTTCCE-E
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-----cEEEeeeecc--ccCCCCcEEEEEeccCCCCCCC-E
Confidence 57889999999996332 456788888889999999862 2221111111 1126788999999999 45 8
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLR 324 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~ 324 (548)
|++++.||.|++||+.+ ...+..+..|...|.+++|+| ++++|++++.||.|+
T Consensus 88 l~~~~~dg~i~v~d~~~--------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 88 LAVAGSRGIIRIINPIT--------------------------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEETTCEEEEECTTT--------------------------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEecCCCEEEEEEchh--------------------------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 99999999999999886 245677788999999999999 999999999999999
Q ss_pred EEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc---------------------
Q 008939 325 VFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--------------------- 380 (548)
Q Consensus 325 vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~--------------------- 380 (548)
+||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp EEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred EEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 9999999988887 6799999999999999999999999999999999876554433
Q ss_pred -------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccc
Q 008939 381 -------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 381 -------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (548)
+|...|.+++|++ .+|++++.|+.|++||+++.+.......
T Consensus 222 ~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------- 269 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWLG---------------DLILSKSCENAIVCWKPGKMEDDIDKIK----------------- 269 (366)
T ss_dssp CSEEECSSCSSCCCEEEEET---------------TEEEEECSSSEEEEEEESSTTCCGGGCC-----------------
T ss_pred CccccccCCcceEEEEEEcC---------------CEEEEEecCCEEEEEeCCCccccccccc-----------------
Confidence 3999999999975 4899999999999999987654211100
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--e--EEEEECCCeEEEEeCCCCCcc------ccCC-
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--S--VLTVCREGHIKIWMRPGVAES------QSSS- 522 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~--l~t~s~Dg~I~iW~~~~~~~~------~~~~- 522 (548)
........+..+..|...|++++|+|+ . |++++.||.|++||+...... ...|
T Consensus 270 ----------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 270 ----------------PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp ----------------TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred ----------------cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 000111345667789999999999987 4 999999999999999876532 2233
Q ss_pred -CCcEE--EecCCCCceEeeeccccc
Q 008939 523 -SETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 523 -~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...+. +++|++++|+++...|.+
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 46665 889999999999888765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=267.34 Aligned_cols=274 Identities=15% Similarity=0.247 Sum_probs=221.5
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
..++|++++ +|+++.+++|+|||+++++ .+..+. .|...|.+++|+|+ +.+|++|+.||.|++||+++
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~--~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs~Dg~v~iw~~~~---- 98 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLWDVQQ---- 98 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSEEEEEETTT----
T ss_pred eEEEECCCC-EEEEEeCCEEEEEECCCCC--EEEEEEecCCCCeEEEEEECCC---CCEEEEEECCCcEEEeecCC----
Confidence 468999886 7888877799999999865 666555 45667999999999 88999999999999999986
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
++.+. ... .|...+.++.+. +. ++++++.++.+++|+.... ...
T Consensus 99 -~~~~~-~~~------~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~-------------------------~~~ 142 (318)
T 4ggc_A 99 -QKRLR-NMT------SHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVA-------------------------EHH 142 (318)
T ss_dssp -TEEEE-EEE------CCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSS-------------------------SCE
T ss_pred -ceeEE-Eec------CccceEEEeecC--CC-EEEEEecCCceEeeecCCC-------------------------cee
Confidence 22222 111 367777766554 45 8999999999999998752 345
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE----EEeeeecCCceEEEEEccCCCE---EEEEeCCCe
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----ICGGKSYYGALLCCAWSMDGKY---ILTGGEDDL 364 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~l~~spdg~~---l~sgs~dg~ 364 (548)
+..+..|...+..+.|++++++|++++.|+.|++||+++++. ......+.+.|.+++++|++.. +++++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence 667788999999999999999999999999999999987653 3445567889999999998763 346678899
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE--EeCCCeEEEEECCCCeEEeeeecCCCCCC
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS--VGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s--~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
|++||.+......... +...+..+.|+| ++ ..+++ ++.|+.|++||+++++++..
T Consensus 223 i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-------~~------~~~~~~sg~~d~~i~iwd~~~~~~~~~--------- 279 (318)
T 4ggc_A 223 IRIWNVCSGACLSAVD-AHSQVCSILWSP-------HY------KELISGHGFAQNQLVIWKYPTMAKVAE--------- 279 (318)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEEET-------TT------TEEEEEECTTTCCEEEEETTTCCEEEE---------
T ss_pred EEEEeccccccccccc-ceeeeeeeeecc-------cc------cceEEEEEcCCCEEEEEECCCCcEEEE---------
Confidence 9999999887776655 778899999999 66 34443 44799999999998876543
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
+.+|.+.|++|+|+|++ |+|++.||+|+|||+..
T Consensus 280 --------------------------------------l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 280 --------------------------------------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 44699999999999984 99999999999999864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=275.70 Aligned_cols=279 Identities=18% Similarity=0.230 Sum_probs=225.7
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV 248 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s 248 (548)
+.++...+.+++|+|+ +.+|++++.+|.|++||+..... ....... .|...|++++|+|++. +|++
T Consensus 4 ~~~~~~~i~~~~~s~~---~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~------~h~~~v~~~~~~~~~~-~l~~ 69 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD---RTQIAICPNNHEVHIYEKSGNKW----VQVHELK------EHNGQVTGVDWAPDSN-RIVT 69 (372)
T ss_dssp EESCSSCCCEEEECTT---SSEEEEECSSSEEEEEEEETTEE----EEEEEEE------CCSSCEEEEEEETTTT-EEEE
T ss_pred ecccCCCeEEEEECCC---CCEEEEEeCCCEEEEEeCCCCcE----Eeeeeec------CCCCcccEEEEeCCCC-EEEE
Confidence 4567889999999998 88999999999999999986210 0111111 3788999999999998 9999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC
Q 008939 249 GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328 (548)
Q Consensus 249 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~ 328 (548)
++.||.|++||+.... ......+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 70 ~~~dg~i~vwd~~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 70 CGTDRNAYVWTLKGRT------------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EETTSCEEEEEEETTE------------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred EcCCCeEEEEECCCCe------------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 9999999999997521 0112233457789999999999999999999999999999
Q ss_pred CCCeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC------------------CCceeEEeccCCCCCe
Q 008939 329 SKEQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM------------------EDRKVVAWGEGHNSWV 386 (548)
Q Consensus 329 ~~~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~------------------~~~~~~~~~~~h~~~V 386 (548)
+.++. ......|...|.+++|+|++++|++++.|+.|++||+ ..++++..+.+|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 87752 2333567899999999999999999999999999995 4678888999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++|+| ++ .+|++++.|+.|++||+++++++..+
T Consensus 206 ~~~~~~~-------~~------~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------- 240 (372)
T 1k8k_C 206 HGVCFSA-------NG------SRVAWVSHDSTVCLADADKKMAVATL-------------------------------- 240 (372)
T ss_dssp EEEEECS-------SS------SEEEEEETTTEEEEEEGGGTTEEEEE--------------------------------
T ss_pred EEEEECC-------CC------CEEEEEeCCCEEEEEECCCCceeEEE--------------------------------
Confidence 9999999 88 69999999999999999987765443
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCC--CC---------------------------
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPG--VA--------------------------- 516 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~--~~--------------------------- 516 (548)
..|..+|++++|+|+. +++++.|+.|++|++.. +.
T Consensus 241 ---------------~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 241 ---------------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp ---------------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred ---------------ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 3577889999999974 55556999999999876 31
Q ss_pred -------------cc-ccCCCCcEEEe--c-CCC---CceEeeeccccc
Q 008939 517 -------------ES-QSSSSETVLST--S-SKD---KPLLSSKVVTSS 545 (548)
Q Consensus 517 -------------~~-~~~~~~~v~~~--s-~d~---~~l~s~~~~g~~ 545 (548)
.. ...|...|.++ . +++ ++|+++...|.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 11 13677788744 3 776 899999888754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=270.75 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=230.2
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
...+..|...|++++|+|+ +.+|++++.||.|++||+.+ ++.+.. . ..|...|++++|+|++. +
T Consensus 25 ~~~l~~h~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~-----~~~~~~-~------~~h~~~v~~~~~~~~~~-~ 88 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKE---GDLLFSCSKDSSASVWYSLN-----GERLGT-L------DGHTGTIWSIDVDCFTK-Y 88 (369)
T ss_dssp EEEEECCSSCEEEEEECTT---SCEEEEEESSSCEEEEETTT-----CCEEEE-E------CCCSSCEEEEEECTTSS-E
T ss_pred cEEEEEeeceEEEEEEcCC---CCEEEEEeCCCEEEEEeCCC-----chhhhh-h------hhcCCcEEEEEEcCCCC-E
Confidence 4456778899999999998 88999999999999999876 222221 1 13789999999999998 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-----
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----- 320 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----- 320 (548)
|++++.||.|++||+.+. ..+..+. |...|.+++|+|++++|++++.+
T Consensus 89 l~s~~~dg~i~iwd~~~~--------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVSNG--------------------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp EEEEETTTEEEEEETTTC--------------------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred EEEEeCCCeEEEEECCCC--------------------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 999999999999999862 2344444 67899999999999999999999
Q ss_pred CeEEEEeCCCCe-----------EEEeeeecCC--ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEeccCCCCCe
Q 008939 321 GYLRVFDYSKEQ-----------LICGGKSYYG--ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWV 386 (548)
Q Consensus 321 g~v~vwd~~~~~-----------~~~~~~~~~~--~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V 386 (548)
+.|++||+.... .+..+..|.. .+.+++|+|++++|++++.|+.|++||+++ .+.+..+..|...|
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce
Confidence 999999997553 2334455655 899999999999999999999999999999 78888999999999
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
.+++|+| ++ .+|++++.|+.|++||+++++.+..+.
T Consensus 222 ~~~~~~~-------~~------~~l~~~~~d~~i~v~d~~~~~~~~~~~------------------------------- 257 (369)
T 3zwl_B 222 SDMQFSP-------DL------TYFITSSRDTNSFLVDVSTLQVLKKYE------------------------------- 257 (369)
T ss_dssp EEEEECT-------TS------SEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------
T ss_pred eEEEECC-------CC------CEEEEecCCceEEEEECCCCceeeeec-------------------------------
Confidence 9999999 88 789999999999999999887665443
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCC--------------eEEEEeCCCCCcc--ccCCCCcEE-
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREG--------------HIKIWMRPGVAES--QSSSSETVL- 527 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg--------------~I~iW~~~~~~~~--~~~~~~~v~- 527 (548)
+...+..++|+|+ .+++++.++ .|++||+...... ...|...+.
T Consensus 258 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 258 -----------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT 320 (369)
T ss_dssp -----------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -----------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence 4567999999997 488888888 8999998876632 335667776
Q ss_pred -EecCCCCceEeeeccccc
Q 008939 528 -STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 528 -~~s~d~~~l~s~~~~g~~ 545 (548)
+++|++++|+++...|.+
T Consensus 321 ~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEECTTSSEEEEEETTSEE
T ss_pred EEECCCCCEEEEEcCCCeE
Confidence 789999999999877654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=261.59 Aligned_cols=273 Identities=14% Similarity=0.149 Sum_probs=225.7
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+.+..+..|...+.+++| |+ +.+|++++.||.|++||+... +...... .|...|.+++|+|++.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~---~~~l~s~~~dg~v~vw~~~~~-----~~~~~~~-------~~~~~v~~~~~~~~~~ 72 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VD---DSKVASVSRDGTVRLWSKDDQ-----WLGTVVY-------TGQGFLNSVCYDSEKE 72 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EE---TTEEEEEETTSEEEEEEESSS-----EEEEEEE-------ECSSCEEEEEEETTTT
T ss_pred HHHHHhhCCCCCcEEEEe-cC---CCEEEEEEcCCcEEEEECCCC-----EEEEEee-------cCCccEEEEEECCCCC
Confidence 467788889999999999 77 778999999999999999752 1111111 2788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.||.|++|++.... ...++..+..|...|.+++| ++++|++++.|+.|
T Consensus 73 -~l~~~~~dg~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 73 -LLLFGGKDTMINGVPLFATS-----------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp -EEEEEETTSCEEEEETTCCT-----------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred -EEEEecCCCeEEEEEeeecC-----------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 99999999999999997521 12445667788899999999 57799999999999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~d 401 (548)
++|| .++.+..+..|...+.+++|.| ++++|++++.|+.|++|| ..+.+..+.. |...|.+++|+| +
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-------~ 195 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-------D 195 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-------T
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-------C
Confidence 9999 6778888899999999999998 899999999999999999 4556666766 999999999999 8
Q ss_pred CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEe
Q 008939 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAH 481 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~ 481 (548)
+ . +++++.|+.|++||+++++++..+
T Consensus 196 ~------~-~~~~~~dg~i~i~d~~~~~~~~~~----------------------------------------------- 221 (313)
T 3odt_A 196 G------H-FISCSNDGLIKLVDMHTGDVLRTY----------------------------------------------- 221 (313)
T ss_dssp T------E-EEEEETTSEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred C------e-EEEccCCCeEEEEECCchhhhhhh-----------------------------------------------
Confidence 8 5 999999999999999987765433
Q ss_pred ecCCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCCCCceEeeecccc
Q 008939 482 RVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 482 ~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
.+|...|++++|+|+ .|++++.||.|++||+...... ...+...+. +++|++++ +++...|.
T Consensus 222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~ 288 (313)
T 3odt_A 222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVGSSDNL 288 (313)
T ss_dssp ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEEETTSC
T ss_pred hcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEEeCCCc
Confidence 458899999999998 5999999999999999877632 235555665 78899984 45555544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=281.43 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=202.5
Q ss_pred cccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 124 LGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
....+|...|.+++|+|+|++|++++.| +|+|||+.++....+..+..|...|.+++|+|+. ++.+|++|+.|+.|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEECCCEEEE
Confidence 3456899999999999999999999988 9999999875433567788899999999998631 1678999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+++.. ...... . ..|...|++++|+|+ +. +|++|+.|+.|++||++.....
T Consensus 86 Wd~~~~~---~~~~~~-~------~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~-------------- 140 (316)
T 3bg1_A 86 WREENGT---WEKSHE-H------AGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQW-------------- 140 (316)
T ss_dssp ECCSSSC---CCEEEE-E------CCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCE--------------
T ss_pred EECCCCc---ceEEEE-c------cCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCc--------------
Confidence 9987521 011111 1 137889999999998 55 8999999999999999753110
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCC-----------------CCEEEEEECCCeEEEEeCCCC---eEEEeeeec
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTD-----------------GTYLATVGRDGYLRVFDYSKE---QLICGGKSY 340 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------------g~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~ 340 (548)
.....+..|...|.+++|+|+ +++|++++.|+.|++||++.. +++..+.+|
T Consensus 141 ---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 141 ---------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp ---------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred ---------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 011233456788999999987 478999999999999999755 467778899
Q ss_pred CCceEEEEEccCC----CEEEEEeCCCeEEEEECCCc---e-eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 341 YGALLCCAWSMDG----KYILTGGEDDLVQVWSMEDR---K-VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 341 ~~~v~~l~~spdg----~~l~sgs~dg~I~vwd~~~~---~-~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
...|.+++|+|++ ++|++++.|+.|++||+++. + ....+..|...|.+++|+| +| .+|+
T Consensus 212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------~g------~~la 278 (316)
T 3bg1_A 212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-------TA------NILA 278 (316)
T ss_dssp SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-------TT------CCEE
T ss_pred CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-------CC------CEEE
Confidence 9999999999987 78999999999999999862 1 2234556899999999999 98 7899
Q ss_pred EEeCCCeEEEEECCC
Q 008939 413 SVGQDTRLLLWDLEM 427 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~ 427 (548)
+++.|+.|+||+...
T Consensus 279 s~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 279 VSGGDNKVTLWKESV 293 (316)
T ss_dssp EEESSSCEEEEEECT
T ss_pred EEcCCCeEEEEEECC
Confidence 999999999999863
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=273.68 Aligned_cols=309 Identities=13% Similarity=0.167 Sum_probs=220.1
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--CCCcE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGA 245 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~ 245 (548)
.+..|...|++++|+|+ +.+|++|+.||.|++||+..... ........ ..|...|++++|+| ++. +
T Consensus 6 ~~~gH~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~------~~~~~~v~~~~~~~~~d~~-~ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFY---GRHVATCSSDQHIKVFKLDKDTS--NWELSDSW------RAHDSSIVAIDWASPEYGR-I 73 (351)
T ss_dssp EECCCSSCEEEEEECSS---SSEEEEEETTSEEEEEEECSSSC--CEEEEEEE------ECCSSCEEEEEECCGGGCS-E
T ss_pred cCcccccceeEEEEcCC---CCEEEEeeCCCeEEEEECCCCCC--cceeccee------ccCCCcEEEEEEcCCCCCC-E
Confidence 44568899999999998 88999999999999999986210 01111111 13889999999999 466 9
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYL 323 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v 323 (548)
|++++.||.|++||++....... . ....++..+..|...|.+++|+|+ +++|++++.|+.|
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~-~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECS-G----------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTS-S----------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred EEEEcCCCeEEEEecCCCccccc-c----------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 99999999999999986321100 0 011346677788999999999999 9999999999999
Q ss_pred EEEeCCCCeEEEeee-------------ecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCCcee--EEeccCCCCC
Q 008939 324 RVFDYSKEQLICGGK-------------SYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMEDRKV--VAWGEGHNSW 385 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~-------------~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~~--~~~~~~h~~~ 385 (548)
++||+++++.+..+. .|...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 999998876543332 57788999999997 89999999999998888887764 7788899999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|++++|+| ++. ....+|++++.|+.|++||++.+........... ........... ........+...
T Consensus 217 i~~~~~~p-------~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 285 (351)
T 3f3f_A 217 IRSISWAP-------SIG--RWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD--MDAQGRSDSNTE 285 (351)
T ss_dssp EEEEEECC-------CSS--CSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eeEEEECC-------CCC--CcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc--cccccccccccc
Confidence 99999999 651 0014899999999999999987755433222100 00011111000 000000122233
Q ss_pred CCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 465 ~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+|+.....++..+.+|...|++++|+|++ |++++.||.|+||++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 445566666677888899999999999999974 9999999999999998654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=282.57 Aligned_cols=333 Identities=9% Similarity=0.071 Sum_probs=232.3
Q ss_pred CCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC---------CCeEEEecCC------------CCceEEEecCCC
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK---------DPIKSIHFSN------------SNPVCHAFDQDA 185 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~---------~~i~~~~~~~------------~~~~~~~~~p~~ 185 (548)
.+.+.|.+++|+|+|.+|++++.| .|+|||+..+.. +.+..+..|. ..|.+++|+|+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467889999999999999999887 999999987431 1366777777 789999999982
Q ss_pred CCCceEEEEEcCCcEEEEEeeecccccc-cc---------------------------eeeeeeeccCCcccCcceEEEE
Q 008939 186 KDGHDLLIGLNSGDVYSVSLRQQLQDVG-KK---------------------------LVGAHHYNKDGSVNNSRCTSVT 237 (548)
Q Consensus 186 ~~~~~l~~g~~dg~I~iwdl~~~~~~~~-~~---------------------------~~~~~~~~~~~~~~~~~v~~l~ 237 (548)
. ...|++++.||.|++||+........ .. .........-...|...|++++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 1 16899999999999999986211000 00 0000000000134899999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEE
Q 008939 238 WVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLAT 316 (548)
Q Consensus 238 ~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s 316 (548)
|+|++. +|++| .|+.|++||++..+.....+. .....+..|...|.+++|+|++ ++|++
T Consensus 185 ~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~s 244 (447)
T 3dw8_B 185 INSDYE-TYLSA-DDLRINLWHLEITDRSFNIVD------------------IKPANMEELTEVITAAEFHPNSCNTFVY 244 (447)
T ss_dssp ECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEE------------------CCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred EcCCCC-EEEEe-CCCeEEEEECCCCCceeeeee------------------cccccccccCcceEEEEECCCCCcEEEE
Confidence 999998 88888 799999999984211100000 0001245678999999999998 99999
Q ss_pred EECCCeEEEEeCCCCeE----EEeeeecCC------------ceEEEEEccCCCEEEEEeCCCeEEEEECCC-ceeEEec
Q 008939 317 VGRDGYLRVFDYSKEQL----ICGGKSYYG------------ALLCCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWG 379 (548)
Q Consensus 317 ~~~dg~v~vwd~~~~~~----~~~~~~~~~------------~v~~l~~spdg~~l~sgs~dg~I~vwd~~~-~~~~~~~ 379 (548)
++.||.|++||+++++. +..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 99999999999998886 677777775 8999999999999999999 9999999997 8888888
Q ss_pred cCCCCC---------------eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 380 EGHNSW---------------VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 380 ~~h~~~---------------V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
.+|... +..++|+| ++ .+|++++.|+.|++||+.+++.+.......+.....
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-------~~------~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 390 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNG-------SD------SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRT 390 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECT-------TS------SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTC
T ss_pred eccccccccccccccccccccceEEEECC-------CC------CEEEEeccCCEEEEEEcCCCcceeeeeccccccccc
Confidence 888642 23499999 88 689999999999999999998764322211111111
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEe
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~ 511 (548)
.... ..+..+.... ..........+...|..++|+|++ |++++.++ +++|.
T Consensus 391 ~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 391 VLKP-------RKVCASGKRK--------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp BCCC-------CCEECSSCCC--------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccCC-------ccccccCCcc--------cccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 1000 0011110000 000000111356789999999974 66666665 77775
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=279.70 Aligned_cols=311 Identities=18% Similarity=0.240 Sum_probs=250.0
Q ss_pred CeEEEecCCCCc-eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNSNP-VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~-~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
....+..|...+ .|+.|+ +.+|++|+.||.|++||+.+ ++.+. .. ..|...|++++|+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~-----~~~l~sgs~dg~i~vwd~~~-----~~~~~-~~------~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE-----DNYVITGADDKMIRVYDSIN-----KKFLL-QL------SGHDGGVWALKYAHGG- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE-----TTEEEEEETTSCEEEEETTT-----TEEEE-EE------CCCSSCEEEEEECSTT-
T ss_pred ceEEEcCCCCCcEEEEEEC-----CCEEEEEcCCCcEEEEECCC-----CcEEE-EE------eCCCcCEEEEEEcCCC-
Confidence 445666676664 677775 45899999999999999876 22221 11 1489999999999887
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC--CCCCEEEEEECCC
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS--TDGTYLATVGRDG 321 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~g~~l~s~~~dg 321 (548)
+|++|+.||.|++||+++ ...+..+..|...|.+++|+ +++++|++++.|+
T Consensus 175 -~l~s~s~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKK--------------------------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp -EEEEEETTSCEEEEETTT--------------------------TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred -EEEEEeCCCCEEEEECCC--------------------------CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 799999999999999986 23466778899999999998 5789999999999
Q ss_pred eEEEEeCCCCeE-----------------------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe
Q 008939 322 YLRVFDYSKEQL-----------------------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 322 ~v~vwd~~~~~~-----------------------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~ 378 (548)
.|++||+++++. +..+.+|...+.++ ++++++|++++.|+.|++||+++++++..
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999987652 44567788888776 67889999999999999999999999999
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCe
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 457 (548)
+.+|...|.+++|+| ++ .+|++++.|+.|++||+++++++..+..+ ..+..+.++ +..
T Consensus 306 ~~~~~~~v~~~~~~~-------~~------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~ 364 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDH-------ER------KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKF 364 (464)
T ss_dssp ECCCSSCEEEEEEET-------TT------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--------SSE
T ss_pred ecCCCCCEEEEEEcC-------CC------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--------CCE
Confidence 999999999999999 88 68999999999999999999999888653 233344443 356
Q ss_pred eeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc---ccCCCCcEEEecCC
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES---QSSSSETVLSTSSK 532 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~~~s~d 532 (548)
+..+..++.+++||+.......... |...+..++|+++. |++++ ||.|++||+.+++.. ...+...+.+++.+
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 7888899999999999877665553 67778888999974 66666 999999999887743 34677788877767
Q ss_pred CCceEeeecc-ccc
Q 008939 533 DKPLLSSKVV-TSS 545 (548)
Q Consensus 533 ~~~l~s~~~~-g~~ 545 (548)
++.++++... |.+
T Consensus 443 ~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 443 GKTLVAAVEKDGQS 456 (464)
T ss_dssp TTEEEEEEEETTEE
T ss_pred CCEEEEEEEeCCeE
Confidence 7776666443 544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=276.25 Aligned_cols=261 Identities=17% Similarity=0.257 Sum_probs=215.2
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+|++++|++++.| .|+|||+.....+.+..+..|...+.+++|+++.. +.+|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVLIW 84 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSCEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCC-CCEEEEeccCCEEEEE
Confidence 346799999999999999999999877 99999998544457778888999999999987522 6789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..+.. . ..|...|++++|+|+ +. +|++++.|+.|++||++...
T Consensus 85 d~~~~~~---~~~~~-~------~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~----------------- 136 (379)
T 3jrp_A 85 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG----------------- 136 (379)
T ss_dssp EEETTEE---EEEEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTS-----------------
T ss_pred EcCCCce---eEeee-e------cCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCC-----------------
Confidence 9986210 01111 1 137889999999999 77 99999999999999998631
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECC-------------CCCEEEEEECCCeEEEEeCCCCe----EEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFST-------------DGTYLATVGRDGYLRVFDYSKEQ----LICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v 344 (548)
......+..|...|.+++|+| ++.+|++++.|+.|++||+++++ ++..+..|...|
T Consensus 137 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 137 -------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp -------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred -------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 123445677889999999999 69999999999999999997653 456678899999
Q ss_pred EEEEEccC---CCEEEEEeCCCeEEEEECCCce-----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMD---GKYILTGGEDDLVQVWSMEDRK-----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|+ +++|++++.|+.|++||++++. .+.....|...|.+++|+| +| .+|++++.
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~~~~ 276 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 276 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-------SS------CCEEEEES
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-------CC------CEEEEecC
Confidence 99999999 8999999999999999999863 2333345899999999999 98 78999999
Q ss_pred CCeEEEEECCCCeEEeee
Q 008939 417 DTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 417 Dg~i~lwd~~~~~~~~~~ 434 (548)
|+.|++||+........+
T Consensus 277 dg~i~iw~~~~~~~~~~~ 294 (379)
T 3jrp_A 277 DNKVTLWKENLEGKWEPA 294 (379)
T ss_dssp SSSEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCCCccccc
Confidence 999999999865544333
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=277.06 Aligned_cols=254 Identities=16% Similarity=0.229 Sum_probs=200.1
Q ss_pred ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFV 247 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~ 247 (548)
..|...|.+++|+|+ +.+|++|+.|+.|++||++... ....... ..|...|++++|+|+ +. +|+
T Consensus 10 ~~H~~~V~~v~~s~~---g~~lasgs~D~~v~lwd~~~~~----~~~~~~l------~gH~~~V~~v~~~~~~~~~-~l~ 75 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYY---GTRLATCSSDRSVKIFDVRNGG----QILIADL------RGHEGPVWQVAWAHPMYGN-ILA 75 (316)
T ss_dssp ----CCEEEEEECGG---GCEEEEEETTTEEEEEEEETTE----EEEEEEE------ECCSSCEEEEEECCGGGSS-CEE
T ss_pred ccccCeEEEeeEcCC---CCEEEEEeCCCeEEEEEecCCC----cEEEEEE------cCCCccEEEEEeCCCCCCC-EEE
Confidence 458889999999998 8899999999999999997521 1111111 148999999999863 56 899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGYLRV 325 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~v~v 325 (548)
+|+.|++|++||++... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++
T Consensus 76 s~s~D~~v~iWd~~~~~------------------------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGT------------------------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEETTSCEEEECCSSSC------------------------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEECCCEEEEEECCCCc------------------------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 99999999999987521 1234566778899999999997 789999999999999
Q ss_pred EeCCCCe---EEEeeeecCCceEEEEEccC-----------------CCEEEEEeCCCeEEEEECCCc---eeEEeccCC
Q 008939 326 FDYSKEQ---LICGGKSYYGALLCCAWSMD-----------------GKYILTGGEDDLVQVWSMEDR---KVVAWGEGH 382 (548)
Q Consensus 326 wd~~~~~---~~~~~~~~~~~v~~l~~spd-----------------g~~l~sgs~dg~I~vwd~~~~---~~~~~~~~h 382 (548)
||++.+. ....+.+|...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+.+|
T Consensus 132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC
T ss_pred EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC
Confidence 9998753 23456678899999999998 468999999999999999764 567788999
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..+|.+++|+| ++. ....+|++++.|+.|+|||++......
T Consensus 212 ~~~V~~v~~sp-------~~~--~~~~~las~s~D~~v~iw~~~~~~~~~------------------------------ 252 (316)
T 3bg1_A 212 SDWVRDVAWAP-------SIG--LPTSTIASCSQDGRVFIWTCDDASSNT------------------------------ 252 (316)
T ss_dssp SSCEEEEECCC-------CSS--CSCCEEEEEETTCEEEEEECSSTTCCC------------------------------
T ss_pred CCceEEEEecC-------CCC--CCCceEEEEcCCCeEEEEEccCccccc------------------------------
Confidence 99999999999 641 011489999999999999987531000
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.....+..|...|.+++|+|++ |++++.|+.|+||+..
T Consensus 253 -------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 -------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0011234578899999999974 9999999999999975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=277.05 Aligned_cols=298 Identities=12% Similarity=0.103 Sum_probs=229.1
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----C
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----G 242 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~ 242 (548)
..+..|...|++++|+|. +|++|+.||.|++||+................ .|...|++++|+|+ +
T Consensus 10 ~~~~~h~~~i~~~~~~~~-----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF------VHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EESSCSSSCEEEEEECSS-----EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE------CCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhcCeEEEEecCC-----eEEEEcCCCEEEEEECCCcccccCCCcceEEe------cCCCcEEEEEEecccccCC
Confidence 344568889999999883 89999999999999998732100011111111 37899999999999 7
Q ss_pred ---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-----CCCeEEEEEC----CC
Q 008939 243 ---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-----QGSINSIAFS----TD 310 (548)
Q Consensus 243 ---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s----p~ 310 (548)
. +|++++.||.|++||+...... ....+..+..| ...|.+++|+ |+
T Consensus 79 ~~~~-~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 79 FELC-LVATTSFSGDLLFYRITREDET---------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp EEEE-EEEEEETTSCEEEEEEEECTTT---------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred cccc-EEEEEcCCCCEEEEEccCCccc---------------------ccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 7 9999999999999999863210 01115566667 4899999999 99
Q ss_pred CCE-EEEEECCCeEEEEeCCC------CeEEE-----eee-------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECC
Q 008939 311 GTY-LATVGRDGYLRVFDYSK------EQLIC-----GGK-------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSME 371 (548)
Q Consensus 311 g~~-l~s~~~dg~v~vwd~~~------~~~~~-----~~~-------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~ 371 (548)
+++ |++++.||.|++||+++ ++.+. .+. .|...|.+++|+|++ +|++++.|+.|++||++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 999 99999999999999988 65555 563 488899999999999 99999999999999999
Q ss_pred CceeEEeccC---C---CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC---CeEEEEECCCCeEEeeeecCCCCCC
Q 008939 372 DRKVVAWGEG---H---NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 372 ~~~~~~~~~~---h---~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D---g~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
+++.+..+.. | ...|.+++|+| ++ .+|++++.| +.|++||+++++++..+........
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~-------~~------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSP-------QG------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECS-------ST------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred CCceeEEEeccccccccCCccceEEECC-------CC------CEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 9999999998 9 99999999999 88 689999999 9999999999887766543110000
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--c
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--S 518 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~ 518 (548)
.......|...|.+++|+|+ .|++++.||.|++||+...+. .
T Consensus 283 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 283 ----------------------------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328 (397)
T ss_dssp -------------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ----------------------------------ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence 00011238899999999997 499999999999999987652 1
Q ss_pred cc------CC---------------CCcEE--EecCCC----------CceEeeeccccc
Q 008939 519 QS------SS---------------SETVL--STSSKD----------KPLLSSKVVTSS 545 (548)
Q Consensus 519 ~~------~~---------------~~~v~--~~s~d~----------~~l~s~~~~g~~ 545 (548)
.. .| ...+. +++|++ ++|+++...|.+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 12 34 66666 788998 789998877654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=290.11 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=226.9
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..-|.+++|+|||+++++++.| +|+ |..... .+ ..|+..+.+++|+|+ | .++.+.+|+.+.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--~l---~gh~~~v~~V~FsPd---g-------~~~~~~~~~~~~- 76 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--DI---NCNSKNLFHVKEFPL---E-------FENKLDFELAQQ- 76 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--CC---SSBGGGTEEEEEECC---C-------CCCTTTTSCCCS-
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc--ee---cCCCccEEEEEECCC---C-------CcceEEEEeCCC-
Confidence 3456789999999999999999 888 654432 33 578999999999998 3 455555554332
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...... .+...|.+++|+|+|. +|++++.||.|++||...
T Consensus 77 -----~~~~~~--------~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~-------------------------- 116 (588)
T 2j04_A 77 -----NGLLNS--------QPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK-------------------------- 116 (588)
T ss_dssp -----SCSSTT--------SCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--------------------------
T ss_pred -----ceEeec--------CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--------------------------
Confidence 111110 1477899999999999 999999999999999532
Q ss_pred CCCeeEeeecCC-----CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE-------EEee----eecCCceEEEEEccC
Q 008939 289 SNPIARWHICQG-----SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-------ICGG----KSYYGALLCCAWSMD 352 (548)
Q Consensus 289 ~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~-------~~~~----~~~~~~v~~l~~spd 352 (548)
.+..+. |.. .|.+++|||||++|++|+.||+|++||+.++++ +.++ .+|...|.+++|+||
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 122233 333 599999999999999999999999999998752 5565 567789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCcee---EEec-cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKV---VAWG-EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~---~~~~-~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
| |++++.|+.|++||+..++. ..++ .+|...|.+++|+ + ..|++++ |+.|++||+..+
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--------g-------~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--------D-------YKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--------T-------TEEEEEC-SSEEEEEETTTT
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--------C-------CEEEEEe-CCeEEEEECCCC
Confidence 9 88889999999999988773 3556 4789999999996 2 3788887 699999999988
Q ss_pred eEE-eeeecCCCCCCcee--cCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCC
Q 008939 429 EIV-VPLRRGPLGGSPTF--STGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREG 505 (548)
Q Consensus 429 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg 505 (548)
+.. ....+...+..+.| ++++ ..+.++..++. ++|... .++|+||..++++.|+
T Consensus 256 ~~~~~~~gh~~~V~~va~~~s~d~------~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~d~ 312 (588)
T 2j04_A 256 SISSLKTGSLENFHIIPLNHEKES------TILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYLEK 312 (588)
T ss_dssp EEEEEECSCCSCCCEEEETTCSSC------EEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHHHH
T ss_pred eEEEEEcCCCceEEEEEeeeCCCC------CEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEcCC
Confidence 873 33344345555666 5554 23344444555 566443 2557777655555577
Q ss_pred eEEEEeCCCCCccccCCCCcEE--EecCCCCceEeeecc
Q 008939 506 HIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 506 ~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
++++|+..+.........-.|+ ++||||+.||++...
T Consensus 313 ~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 313 KFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp HHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 8888877655533333333344 889999999988654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=267.77 Aligned_cols=276 Identities=14% Similarity=0.154 Sum_probs=217.8
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
..+|.+.|.+++|+|++.+|++++.| .|+|||+..... +.+..+..|...+.+++|+|.. ++.+|++++.||.|++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-YGRIIASASYDKTVKL 85 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-GCSEEEEEETTSCEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-CCCEEEEEcCCCeEEE
Confidence 45799999999999999999999887 999999986432 3566667789999999999931 1679999999999999
Q ss_pred EEeeeccccc-cc--ceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 203 VSLRQQLQDV-GK--KLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 203 wdl~~~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
||++...... .+ +.... ...|...|.+++|+|+ +. +|++++.||.|++||++... ....+.......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~ 157 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCT------LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPS-DLRSWTLTSEMK 157 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEE------ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTT-CTTCCEEEEEEE
T ss_pred EecCCCcccccccCcceeee------ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChH-Hhcccccccccc
Confidence 9998631110 00 11111 1137899999999999 77 99999999999999998633 222221100000
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCC---CCEEEEEECCCeEEEEeCCCCeE--EEeeeecCCceEEEEEccC
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTD---GTYLATVGRDGYLRVFDYSKEQL--ICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~l~~spd 352 (548)
. .......|...+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...|.+++|+|+
T Consensus 158 ~------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 158 V------------LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp S------------CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred c------------cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence 0 00011245688999999997 89999999999998888887765 6677889999999999999
Q ss_pred C----CEEEEEeCCCeEEEEECCCc----------------------------------------------eeEEeccCC
Q 008939 353 G----KYILTGGEDDLVQVWSMEDR----------------------------------------------KVVAWGEGH 382 (548)
Q Consensus 353 g----~~l~sgs~dg~I~vwd~~~~----------------------------------------------~~~~~~~~h 382 (548)
+ ++|++|+.|+.|++||++++ +.+..+.+|
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 8 89999999999999999864 677788899
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
...|++++|+| ++ .+|++++.|+.|++||+.+++.+..+.
T Consensus 306 ~~~v~~~~~s~-------~~------~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 306 NGEVWSVSWNL-------TG------TILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp SSCEEEEEECS-------SS------CCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred cccEEEEEEcC-------CC------CEEEEecCCCcEEEEecCcCcchhhee
Confidence 99999999999 88 799999999999999999886655543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=274.44 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=226.2
Q ss_pred EEEccCCCCCCeEEEecCCCCceEEEecCCCCCC-ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcce
Q 008939 155 ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDG-HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRC 233 (548)
Q Consensus 155 vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~-~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v 233 (548)
+|++.. ...+..+..|...+.+++|+|+ + .+|++|+.||.|++||+... +.. ... ....|...|
T Consensus 57 ~~~~~~--~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~-----~~~-~~~----~~~~h~~~v 121 (383)
T 3ei3_B 57 IRSLKS--YKLHRTASPFDRRVTSLEWHPT---HPTTVAVGSKGGDIILWDYDVQ-----NKT-SFI----QGMGPGDAI 121 (383)
T ss_dssp HHHHTT--CEEEEEECCCSSCEEEEEECSS---CTTEEEEEEBTSCEEEEETTST-----TCE-EEE----CCCSTTCBE
T ss_pred cccccc--cceEEeccCCCCCEEEEEECCC---CCCEEEEEcCCCeEEEEeCCCc-----ccc-eee----ecCCcCCce
Confidence 344444 3356677778899999999998 5 79999999999999999862 111 111 111378999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee---ecCCCeEEEEECCC
Q 008939 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH---ICQGSINSIAFSTD 310 (548)
Q Consensus 234 ~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~ 310 (548)
.+++|+|++..+|++++.|+.|++||++.. .+..+. .|...|.+++|+|+
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGS---------------------------VIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETTSC---------------------------EEEEEECCCCSSCCEEEEEEETT
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECCCC---------------------------ceEEEeccCCCCCCeEEEEECCC
Confidence 999999944339999999999999999741 122222 33478999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC----ceeEEeccCCCCC
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED----RKVVAWGEGHNSW 385 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~----~~~~~~~~~h~~~ 385 (548)
+++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+ +|...
T Consensus 175 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~ 252 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP 252 (383)
T ss_dssp TTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC
T ss_pred CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc
Confidence 999999999999999999 5778888999999999999999999 999999999999999998 5666666 59999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+|. +| .+|++++.|+.|++||+++++++..+..+.....
T Consensus 253 v~~~~~s~~------~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------------- 297 (383)
T 3ei3_B 253 VNAAYFNPT------DS------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF----------------------- 297 (383)
T ss_dssp EEEEEECTT------TS------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC-----------------------
T ss_pred eEEEEEcCC------CC------CEEEEEcCCCcEEEEECCCCcccccccccccccc-----------------------
Confidence 999999872 55 6899999999999999998887665553111000
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCCCCCccc--cC--CCC--cEEEecCCCCceEe
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRPGVAESQ--SS--SSE--TVLSTSSKDKPLLS 538 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~~~~~~--~~--~~~--~v~~~s~d~~~l~s 538 (548)
....++.........+..++|+|+. + +++.|+.|++||+..+.... .. +.. ..++++||+++|++
T Consensus 298 -------~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 298 -------QHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp -------TTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred -------ccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 0000000011123456678888874 5 88999999999998766322 12 222 23389999999999
Q ss_pred ee
Q 008939 539 SK 540 (548)
Q Consensus 539 ~~ 540 (548)
+.
T Consensus 370 ~s 371 (383)
T 3ei3_B 370 GM 371 (383)
T ss_dssp EE
T ss_pred ec
Confidence 96
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=272.07 Aligned_cols=326 Identities=12% Similarity=0.122 Sum_probs=227.0
Q ss_pred cCCCCCCceeEEeCC-CCCEEEEecCC-eEEEEEccCCCCCCeEEE-----------ecCCCCceEEEecCCCCCCceEE
Q 008939 126 ASSSSTSMTNTNFDG-KGTYIIFNVGD-AIFISDLNSQDKDPIKSI-----------HFSNSNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~-~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~-----------~~~~~~~~~~~~~p~~~~~~~l~ 192 (548)
..+|...|.+++|+| ++.++++++.| .|+|||+.+......... ..+...+.+++|+|+ ++.+|+
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~ 116 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--DTGMFT 116 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--CTTCEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--CCcEEE
Confidence 446999999999999 99999998877 999999998653332221 137889999999994 267899
Q ss_pred EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 193 IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG--AFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 193 ~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
+++.||.|++||++.. ....... +...+.++.|+|.+.. +|++++.||.|++||++.
T Consensus 117 s~~~d~~i~iwd~~~~------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------- 175 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL------QTADVFN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-------- 175 (408)
T ss_dssp EEETTSEEEEEETTTT------EEEEEEE-------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--------
T ss_pred EEeCCCeEEEeeCCCC------ccceecc-------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--------
Confidence 9999999999998862 2222222 5778999999985432 899999999999999986
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCe-EEEee-----------
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQ-LICGG----------- 337 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~-~~~~~----------- 337 (548)
...+..+..|...|.+++|+|+++ +|++++.||.|++||+++++ .+..+
T Consensus 176 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 176 ------------------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp ------------------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred ------------------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 234566778889999999999988 58999999999999998765 33333
Q ss_pred ----eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC-----CCeEEEEEecCCCCCCCCCCcccee
Q 008939 338 ----KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN-----SWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 338 ----~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
..|...|.+++|+|++++|++++.|+.|++||+++++....+..+. ..+. +.+.. . .+
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~-~~------ 304 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK-FTVSC-----G-CS------ 304 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCC-CEECC-----S-SS------
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccce-eEEec-----C-CC------
Confidence 5688899999999999999999999999999999987665544321 1111 11111 0 22
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
..++.++.|+.|++||+.+++++..+..+ ..+..+.|++++ ..+.++..++.+++|++...+++.....+...
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 378 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF------QELYSGSRDCNILAWVPSLYEPVPDDDETTTK 378 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT------TEEEEEETTSCEEEEEECC-------------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC------CEEEEECCCCeEEEEeCCCCCccCCCCceEec
Confidence 35777788999999999999999988753 456778888875 56778889999999999998887665543322
Q ss_pred eeEEEEeC---CeEEEEECCCeEEEEeCCC
Q 008939 488 LSGLIFTQ---ESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 488 V~~l~fsp---d~l~t~s~Dg~I~iW~~~~ 514 (548)
..+.+ +.+.+.+.|+.+++|+.+.
T Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 ---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ------------------------------
T ss_pred ---cccccccceeecccCccCceeecCCcc
Confidence 23344 2367888999999999764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=278.05 Aligned_cols=290 Identities=15% Similarity=0.195 Sum_probs=227.4
Q ss_pred ceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCC--CCeEEEecCCCCceEEEecC-CCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDK--DPIKSIHFSNSNPVCHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~--~~i~~~~~~~~~~~~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
...++++|+...+++ ++.+ .|+||++..... ..+..+..|...|.+++|+| + +.+|++|+.||.|++||+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHN---DNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTC---TTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCC---CCEEEEEeCCCeEEEEEccC
Confidence 346888888776665 3444 999999975321 35556777899999999999 6 78999999999999999986
Q ss_pred ccccc-c-cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 208 QLQDV-G-KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 208 ~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
..... . +.+.. . ..|...|++++|+|++.++|++++.||.|++||++..
T Consensus 114 ~~~~~~~~~~~~~-~------~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---------------------- 164 (402)
T 2aq5_A 114 GGLVLPLREPVIT-L------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---------------------- 164 (402)
T ss_dssp TCCSSCBCSCSEE-E------ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----------------------
T ss_pred CCCccccCCceEE-e------cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----------------------
Confidence 31100 0 11111 1 1388999999999998559999999999999999862
Q ss_pred CCCCCCeeEe--eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-eecCCc-eEEEEEccCCCEEEEE--
Q 008939 286 YSKSNPIARW--HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG-KSYYGA-LLCCAWSMDGKYILTG-- 359 (548)
Q Consensus 286 ~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~-v~~l~~spdg~~l~sg-- 359 (548)
..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++++|++|
T Consensus 165 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 165 ----AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp ----EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred ----CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 334555 568899999999999999999999999999999999998888 678775 8999999999999999
Q ss_pred -eCCCeEEEEECCCcee-EEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEE-EEeCCCeEEEEECCCCeE-Eeee
Q 008939 360 -GEDDLVQVWSMEDRKV-VAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG-SVGQDTRLLLWDLEMDEI-VVPL 434 (548)
Q Consensus 360 -s~dg~I~vwd~~~~~~-~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~-s~~~Dg~i~lwd~~~~~~-~~~~ 434 (548)
+.|+.|++||+++++. +.... .|...|.+++|+| ++ .+|+ +++.|+.|++||+.+++. +..+
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~------~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP-------DT------NIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET-------TT------TEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC-------CC------CEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 7999999999998654 32222 4788899999999 88 4564 566899999999987663 2222
Q ss_pred ecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCC
Q 008939 435 RRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514 (548)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~ 514 (548)
. .+ .|..+|.+++|+|++.+.++.|+.+++|++..
T Consensus 308 ~--------------------------------------------~~-~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 308 S--------------------------------------------MF-SSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp E--------------------------------------------EE-CCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred c--------------------------------------------cc-ccCCcccceEEecccccceecceeEEEEEcCC
Confidence 1 12 25688999999998744456788999999876
Q ss_pred CC
Q 008939 515 VA 516 (548)
Q Consensus 515 ~~ 516 (548)
..
T Consensus 343 ~~ 344 (402)
T 2aq5_A 343 RK 344 (402)
T ss_dssp TE
T ss_pred Cc
Confidence 44
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=269.79 Aligned_cols=256 Identities=17% Similarity=0.297 Sum_probs=209.0
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--C
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--G 242 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~ 242 (548)
++..+..|...|.+++|+|+ +.+|++|+.||.|++||+.... .+ ..... ..|...|++++|+|+ +
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~~~~~---~~-~~~~~------~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYY---GKRLATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp --CCEEECCCCEEEEEECSS---SSEEEEEETTSCEEEEEEETTE---EE-EEEEE------CCCSSCEEEEEECCGGGC
T ss_pred ccEEecCCcccEEEEEEcCC---CCEEEEEECCCcEEEEecCCCc---ce-eeeEe------cCCCCcEEEEEeCCCCCC
Confidence 45667789999999999998 8899999999999999997311 11 11111 138899999999977 6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRD 320 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~d 320 (548)
. +|++++.||.|++||+.... ...+..+..|...|.+++|+|+ +++|++++.|
T Consensus 70 ~-~l~s~~~dg~v~iwd~~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 70 T-ILASCSYDGKVLIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp S-EEEEEETTSCEEEEEEETTE------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred C-EEEEeccCCEEEEEEcCCCc------------------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 6 99999999999999998621 1245566778899999999998 9999999999
Q ss_pred CeEEEEeCCCCe--EEEeeeecCCceEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCce----eEEeccC
Q 008939 321 GYLRVFDYSKEQ--LICGGKSYYGALLCCAWSM-------------DGKYILTGGEDDLVQVWSMEDRK----VVAWGEG 381 (548)
Q Consensus 321 g~v~vwd~~~~~--~~~~~~~~~~~v~~l~~sp-------------dg~~l~sgs~dg~I~vwd~~~~~----~~~~~~~ 381 (548)
+.|++||+++.. ....+..|...|.+++|+| ++++|++++.|+.|++||+++++ .+..+.+
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 999999998773 3445678999999999999 69999999999999999998753 5567889
Q ss_pred CCCCeEEEEEecCCCCCCCC---CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 382 HNSWVSGVAFDSYWSQPNSD---GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~d---g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
|...|.+++|+| + + .+|++++.|+.|++||++++.......
T Consensus 205 h~~~v~~~~~sp-------~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------- 248 (379)
T 3jrp_A 205 HSDWVRDVAWSP-------TVLLR------SYLASVSQDRTCIIWTQDNEQGPWKKT----------------------- 248 (379)
T ss_dssp CSSCEEEEEECC-------CCSSS------EEEEEEETTSCEEEEEESSTTSCCEEE-----------------------
T ss_pred ccCcEeEEEECC-------CCCCC------CeEEEEeCCCEEEEEeCCCCCccceee-----------------------
Confidence 999999999999 8 7 799999999999999998764211110
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
+.....|...|++++|+|++ |++++.||.|++|++.
T Consensus 249 -------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 249 -------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------------------ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------------------eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 00112478899999999984 9999999999999976
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=283.13 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=215.2
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.......+...|+|++|+|.. +.+|++|+.||.|+|||+.... ..... ....|...|++|+|+|.+.+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~--~~~lasGs~dg~i~lWd~~~~~---~~~~~-------~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTH--PSTVAVGSKGGDIMLWNFGIKD---KPTFI-------KGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSC--TTCEEEEETTSCEEEECSSCCS---CCEEE-------CCCSSSCCCCEEEECSSCTT
T ss_pred ecccCCCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEEECCCCC---ceeEE-------EccCCCCCEEEEEEeCCCCC
Confidence 344555677889999999962 5689999999999999987621 11111 11248999999999995444
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.||+|++||++... . ..+...+.+...+.+++|+|++++|++++.||.|+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-L-----------------------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI 234 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-E-----------------------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred EEEEEeCCCEEEEeeccCCc-e-----------------------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence 99999999999999987410 0 00011112235678999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEE---eccCCCCCeEEEEEecCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVA---WGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+||++ ++.+..+.+|...|.+++|+|+++ +|++|+.|+.|+|||+++.+... ...+|...|++++|+|
T Consensus 235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp------- 306 (435)
T 4e54_B 235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP------- 306 (435)
T ss_dssp EEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-------
T ss_pred eeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-------
Confidence 99997 456677889999999999999986 78899999999999998876443 3357999999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
|| .+|++++.|+.|+|||+.++.+...+..+...... ....+..
T Consensus 307 dg------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 350 (435)
T 4e54_B 307 DG------ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ------------------------------HLTPIKA 350 (435)
T ss_dssp TS------SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS------------------------------SSCCCBC
T ss_pred CC------CeeEEEcCCCEEEEEECCCCccceEEecccccccc------------------------------cceeEEE
Confidence 98 79999999999999999998877665432110000 0000001
Q ss_pred eecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCCCccc---cCCCCcE---EEecCCCCceEeeecc
Q 008939 481 HRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVAESQ---SSSSETV---LSTSSKDKPLLSSKVV 542 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~~~~~---~~~~~~v---~~~s~d~~~l~s~~~~ 542 (548)
.......+..+.++++. ++++..++.|++||..++.... ..|...| .+|+||+++|++|...
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 11123344555566652 4444566789999998776332 2444444 3789999999998644
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=266.34 Aligned_cols=286 Identities=12% Similarity=0.094 Sum_probs=229.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSV 203 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iw 203 (548)
.+|.+.|.+++|+|++.++++++.| .|+|||+..... .++..+..+...+.+++|+|+ +. +|++|+.||.|++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEEE
Confidence 4789999999999999999998877 999999986431 125555678889999999998 88 89999999999999
Q ss_pred Ee-eecccccccceeeeeeeccCCcc--cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SL-RQQLQDVGKKLVGAHHYNKDGSV--NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl-~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|+ ... ... . ... |...|++++|+| +. +|++++.|+.|++||++........
T Consensus 85 d~~~~~------~~~-~------~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~----------- 138 (342)
T 1yfq_A 85 DLIGSP------SFQ-A------LTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIA----------- 138 (342)
T ss_dssp CSSSSS------SEE-E------CBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEE-----------
T ss_pred EeccCC------ceE-e------ccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccc-----------
Confidence 98 652 111 0 113 788999999999 76 9999999999999998741100000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-Ce--EEEeeeecCCceEEEEEcc-CCCEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQ--LICGGKSYYGALLCCAWSM-DGKYI 356 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~--~~~~~~~~~~~v~~l~~sp-dg~~l 356 (548)
....++..+. |...|.+++|+|++ |++++.|+.|++||+++ +. .......|...+.+++|+| ++++|
T Consensus 139 ------~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 139 ------VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ------EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ------ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 0001122223 56889999999987 99999999999999988 44 3334456788999999999 99999
Q ss_pred EEEeCCCeEEEEECCCc------eeEEeccCCCC---------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 357 LTGGEDDLVQVWSMEDR------KVVAWGEGHNS---------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~------~~~~~~~~h~~---------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
++++.|+.|++||++.. +.+..+..|.. .|.+++|+| ++ .+|++++.|+.|+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-------~~------~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-------RH------KFLYTAGSDGIIS 276 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-------TT------CCEEEEETTSCEE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-------CC------CEEEEecCCceEE
Confidence 99999999999999887 77778887765 999999999 88 7899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC-CCCeeEEEEeCC--eE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH-TEPLSGLIFTQE--SV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h-~~~V~~l~fspd--~l 498 (548)
+||+.+++++..+. +| ..+|++++ |+ .|
T Consensus 277 vwd~~~~~~~~~~~-----------------------------------------------~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 277 CWNLQTRKKIKNFA-----------------------------------------------KFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp EEETTTTEEEEECC-----------------------------------------------CCSSSEEEEEE--ECSSEE
T ss_pred EEcCccHhHhhhhh-----------------------------------------------cccCCCceEec--CCCCeE
Confidence 99999888765433 45 88899999 65 59
Q ss_pred EEEECCCe-EEEEeC
Q 008939 499 LTVCREGH-IKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~-I~iW~~ 512 (548)
++++.||. .+.|..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 665554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.51 Aligned_cols=251 Identities=20% Similarity=0.234 Sum_probs=196.6
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~ 247 (548)
...++...|.+++|+|+ +.+|++|+.||.|++||+..... .... ....|...|++++|+|+++ +|+
T Consensus 6 ~~~~~~~~v~~~~~s~~---g~~l~~~~~d~~i~iw~~~~~~~----~~~~------~~~~h~~~v~~~~~s~~~~-~l~ 71 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ---RTEFVTTTATNQVELYEQDGNGW----KHAR------TFSDHDKIVTCVDWAPKSN-RIV 71 (377)
T ss_dssp EEEECSSCCSCCEECSS---SSEEECCCSSSCBCEEEEETTEE----EECC------CBCCCSSCEEEEEECTTTC-CEE
T ss_pred eEecCCCcEEEEEECCC---CCEEEEecCCCEEEEEEccCCce----EEEE------EEecCCceEEEEEEeCCCC-EEE
Confidence 44556778999999998 88999999999999999986210 1111 1124889999999999998 899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
+++.|+.|++||+.... ...+...+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 72 s~s~d~~v~vwd~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 72 TCSQDRNAYVYEKRPDG-----------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY 128 (377)
T ss_dssp EEETTSSEEEC-----------------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred EEeCCCeEEEEEcCCCC-----------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE
Confidence 99999999999998632 0124556677889999999999999999999999999999
Q ss_pred CCCCe---EEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECC------------------CceeEEeccCCCCC
Q 008939 328 YSKEQ---LICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSME------------------DRKVVAWGEGHNSW 385 (548)
Q Consensus 328 ~~~~~---~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~------------------~~~~~~~~~~h~~~ 385 (548)
+++++ ++..+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+ +|...
T Consensus 129 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (377)
T 3dwl_C 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW 207 (377)
T ss_dssp C-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS
T ss_pred ECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce
Confidence 99876 3666777 99999999999999999999999999999995 35677777 89999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|.+++|+| +| .+|++++.|+.|++||++++++...
T Consensus 208 v~~~~~sp-------~~------~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------- 242 (377)
T 3dwl_C 208 VHAVGFSP-------SG------NALAYAGHDSSVTIAYPSAPEQPPR-------------------------------- 242 (377)
T ss_dssp EEEEEECT-------TS------SCEEEEETTTEEC-CEECSTTSCEE--------------------------------
T ss_pred EEEEEECC-------CC------CEEEEEeCCCcEEEEECCCCCCcce--------------------------------
Confidence 99999999 98 6899999999999999988764211
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+..+.+|...|++++|+|++ |++++.|+.+ +|+..
T Consensus 243 -----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 -----------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -----------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred -----------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 122345788999999999984 6666655555 66654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-31 Score=268.60 Aligned_cols=266 Identities=17% Similarity=0.265 Sum_probs=218.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
.+.+++|++. .+++++.||.|++||+.+. +. ...... .|...|++++|+|++. +|++++.||.
T Consensus 95 ~~~~~~~s~~-----~l~~~~~d~~v~lw~~~~~-----~~-~~~~~~-----~~~~~v~~v~~s~~~~-~l~~~~~dg~ 157 (401)
T 4aez_A 95 YLNLLDWSNL-----NVVAVALERNVYVWNADSG-----SV-SALAET-----DESTYVASVKWSHDGS-FLSVGLGNGL 157 (401)
T ss_dssp TCBCEEECTT-----SEEEEEETTEEEEEETTTC-----CE-EEEEEC-----CTTCCEEEEEECTTSS-EEEEEETTSC
T ss_pred eEEEEeecCC-----CEEEEECCCeEEEeeCCCC-----cE-eEeeec-----CCCCCEEEEEECCCCC-EEEEECCCCe
Confidence 3455666653 5889999999999998762 21 111110 1688999999999998 9999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-KEQL 333 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-~~~~ 333 (548)
|++||+.. ...+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 158 i~iwd~~~--------------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 158 VDIYDVES--------------------------QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp EEEEETTT--------------------------CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred EEEEECcC--------------------------CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 99999976 2456677788999999999 55799999999999999998 5667
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+..+..|.+.|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+| ++. .++++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-------~~~-----~ll~~ 277 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-------WQS-----NLLAT 277 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECT-------TST-----TEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECC-------CCC-----CEEEE
Confidence 788899999999999999999999999999999999999999999999999999999999 762 46777
Q ss_pred Ee--CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEE
Q 008939 414 VG--QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGL 491 (548)
Q Consensus 414 ~~--~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l 491 (548)
++ .|+.|++||+++++++..+. |...|.++
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~------------------------------------------------~~~~v~~~ 309 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVD------------------------------------------------AGSQVTSL 309 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEE------------------------------------------------CSSCEEEE
T ss_pred ecCCCCCEEEEEECCCCCEEEEEe------------------------------------------------CCCcEEEE
Confidence 65 79999999999887765443 34679999
Q ss_pred EEeCCe--EEEEE--CCCeEEEEeCCCCCcc----ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 492 IFTQES--VLTVC--REGHIKIWMRPGVAES----QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 492 ~fspd~--l~t~s--~Dg~I~iW~~~~~~~~----~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
+|+|++ |++++ .||.|++|+++..... ...|...+. +++||+++|+++...|.+
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 999974 77744 8999999998875422 235666665 889999999999877654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=266.86 Aligned_cols=280 Identities=18% Similarity=0.154 Sum_probs=223.7
Q ss_pred cCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
|...|++++|+|++..++++++. ||.|++||+.... ........|...|.++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------------------------~~~~~~~~~~~~v~~~ 71 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------------------------LKLLREIEKAKPIKCG 71 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------------------------EEEEEEEEESSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------------------------ccceeeecccCcEEEE
Confidence 88999999999999856677776 9999999998621 0111223678999999
Q ss_pred EECCC---CCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCceEEEEE------ccCCCEEEEEeCCCeEEEEECCCce-
Q 008939 306 AFSTD---GTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGALLCCAW------SMDGKYILTGGEDDLVQVWSMEDRK- 374 (548)
Q Consensus 306 ~~sp~---g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~------spdg~~l~sgs~dg~I~vwd~~~~~- 374 (548)
+|+|+ +++|++++.||.|++||+.+++ .+..+..|...|.+++| +|++++|++++.|+.|++||+++++
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 99998 6999999999999999999887 78888999999999955 6899999999999999999999886
Q ss_pred eEEeccCCCC----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCC
Q 008939 375 VVAWGEGHNS----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 375 ~~~~~~~h~~----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (548)
.+..+..|.. .|.+++|.+.|++ ++ .+|++++.|+.|++||+++++..........+..+.|++.+.
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQ---EE------RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC----CC------CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred cceeccccCCCCCCceEEEEEEeccCC---CC------CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence 6777766554 8999994332211 77 799999999999999999999877776667777888877210
Q ss_pred ccccCCeeeecccCCCCceeecCCCCceEEee-----cCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCCCcc----
Q 008939 451 SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-----VHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGVAES---- 518 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-----~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~~~~---- 518 (548)
....+.++..++.+++||+....++..+. +|...|++++|+|+ .|++++.||.|++||+......
T Consensus 223 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 223 ---SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp ---SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred ---CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 12556778889999999998877766555 89999999999997 4899999999999998754322
Q ss_pred -----------------ccCCCCcEE--EecCCCCceE-eeeccccc
Q 008939 519 -----------------QSSSSETVL--STSSKDKPLL-SSKVVTSS 545 (548)
Q Consensus 519 -----------------~~~~~~~v~--~~s~d~~~l~-s~~~~g~~ 545 (548)
...|...+. +++|++++|+ ++...|.+
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 224666666 7899999998 67766544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=268.37 Aligned_cols=289 Identities=9% Similarity=0.034 Sum_probs=223.1
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCC-CCeEEEec--------------------------------------
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK-DPIKSIHF-------------------------------------- 171 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~-~~i~~~~~-------------------------------------- 171 (548)
.++.+++|+++|++++++.++.|++||+.++.. ..+.....
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 467789999999988888888999999987540 02222221
Q ss_pred ----------------CCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEee--ecccccccceeeeeeeccCCcccCcc
Q 008939 172 ----------------SNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLR--QQLQDVGKKLVGAHHYNKDGSVNNSR 232 (548)
Q Consensus 172 ----------------~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (548)
+...+.+++|+|+ +.+| ++++.||.|++||+. . ++.+..... ..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~dg~v~iwd~~~~~-----~~~~~~~~~-----~~~~~~ 151 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSD---ESRLIACADSDKSLLVFDVDKTS-----KNVLKLRKR-----FCFSKR 151 (450)
T ss_dssp ---------------CCCCCEEEEEECTT---SSEEEEEEGGGTEEEEEEECSSS-----SSCEEEEEE-----EECSSC
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCC---CCEEEEEECCCCeEEEEECcCCC-----Cceeeeeec-----ccCCCC
Confidence 2226899999999 7775 888899999999998 4 122111110 125788
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--
Q 008939 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-- 310 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-- 310 (548)
|++++|+|++. +|++++.||.|++|++....... .++..+..|...|.+++|+|+
T Consensus 152 v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 152 PNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEK----------------------FTQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSS----------------------CCCCCSEECSSCEEEEEEEECTT
T ss_pred ceEEEEcCCCC-EEEEEeCCCcEEEEecCCccccc----------------------ccceeeecccCceEEEEEcCCCC
Confidence 99999999998 99999999999999997632110 033456678899999999999
Q ss_pred -CCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-------
Q 008939 311 -GTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG------- 381 (548)
Q Consensus 311 -g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~------- 381 (548)
+++|++++.|+.|++||+.+++++.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+..
T Consensus 209 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 287 (450)
T 2vdu_B 209 GHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPY 287 (450)
T ss_dssp SCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGG
T ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhh
Confidence 99999999999999999999988776 56899999999999 999999999999999999999988877752
Q ss_pred ------------------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEEC--CCCeEEeeeecCCCC
Q 008939 382 ------------------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDL--EMDEIVVPLRRGPLG 440 (548)
Q Consensus 382 ------------------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~--~~~~~~~~~~~~~~~ 440 (548)
+...|..++|+| ++ .+|++++ .|+.|++||+ ..+..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-------~~------~~l~~~~~~d~~i~iw~~~~~~~~~l~-------- 346 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSK-------NL------PFVAFFVEATKCIIILEMSEKQKGDLA-------- 346 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECS-------SS------SEEEEEETTCSEEEEEEECSSSTTCEE--------
T ss_pred hhhcccccccccccccccceEEEEEEEEeC-------CC------CEEEEEECCCCeEEEEEeccCCCCcee--------
Confidence 245799999999 88 6788887 8999999999 4442111
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEEC-------CCeEEEEeC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCR-------EGHIKIWMR 512 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~-------Dg~I~iW~~ 512 (548)
.+..+..| ..|.+++|+|+. +++.+. +..|++|.+
T Consensus 347 ------------------------------------~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 347 ------------------------------------LKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp ------------------------------------EEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred ------------------------------------eccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 12234456 789999999986 344332 556899986
Q ss_pred CC
Q 008939 513 PG 514 (548)
Q Consensus 513 ~~ 514 (548)
..
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 54
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=274.02 Aligned_cols=314 Identities=11% Similarity=0.164 Sum_probs=215.0
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-----ccceeeeeeeccCCcccC------------cceE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-----GKKLVGAHHYNKDGSVNN------------SRCT 234 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-----~~~~~~~~~~~~~~~~~~------------~~v~ 234 (548)
+.+.|.+++|+|+ +.+|++|+.||.|++||+....... ..++.... ..|. ..|+
T Consensus 27 ~~~~V~~v~~s~~---g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 27 EADIISTVEFNHS---GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF------QSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGGSEEEEEECSS---SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE------ECCCCEEEGGGTEEECCCCC
T ss_pred ccCcEEEEEECCC---CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc------ccccccccccccccccCceE
Confidence 4568999999998 8899999999999999998632100 00011111 1355 8899
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce---------eee--ec--CCCCCCCCeeE-eeecC
Q 008939 235 SVTWVPGGD-GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ---------FSV--AH--PRYSKSNPIAR-WHICQ 299 (548)
Q Consensus 235 ~l~~~p~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---------~~~--~~--~~~~~~~~~~~-~~~h~ 299 (548)
+++|+|++. .+|++++.|+.|++||+.........+........ +.+ .+ .......+... ...|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 999999982 28999999999999998752210000000000000 000 00 00000011223 35799
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEE-------eeeecCCceEEEEEccCC-CEEEEEeCCCeEEEEEC
Q 008939 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLIC-------GGKSYYGALLCCAWSMDG-KYILTGGEDDLVQVWSM 370 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~-------~~~~~~~~v~~l~~spdg-~~l~sgs~dg~I~vwd~ 370 (548)
..|.+++|+|++++|+++ .|+.|++||+++ ++.+. .+..|...|.+++|+|++ ++|++|+.|+.|++||+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 999999999999999998 899999999984 44443 256789999999999998 99999999999999999
Q ss_pred CCcee----EEeccCCCC------------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEee
Q 008939 371 EDRKV----VAWGEGHNS------------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVVP 433 (548)
Q Consensus 371 ~~~~~----~~~~~~h~~------------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~~ 433 (548)
++++. +..+.+|.. .|.+++|+| +| .+|++++. +.|++||+++ ++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~g------~~l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-------SG------RYMMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-------TS------SEEEEEES-SEEEEEETTCCSSCSCC
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECC-------CC------CEEEEeeC-CeEEEEeCCCCccccce
Confidence 99886 778888876 999999999 98 78999988 9999999987 665544
Q ss_pred eecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCC---CeeEEEEeCC--eEEEEECCCeEE
Q 008939 434 LRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE---PLSGLIFTQE--SVLTVCREGHIK 508 (548)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~---~V~~l~fspd--~l~t~s~Dg~I~ 508 (548)
+..+..... .+.+. .+.. .+..++|+|+ .|++++.||.|+
T Consensus 323 ~~~~~~~~~-------------------------~l~~~----------~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 323 YQVHEYLRS-------------------------KLCSL----------YENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EESCGGGTT-------------------------THHHH----------HHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred eeccccccc-------------------------ccccc----------ccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 433100000 00000 0001 2345999997 499999999999
Q ss_pred EEeCCCCCcccc----------------------------------CCCCcE--EEecCCCCceEeeecccc
Q 008939 509 IWMRPGVAESQS----------------------------------SSSETV--LSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 509 iW~~~~~~~~~~----------------------------------~~~~~v--~~~s~d~~~l~s~~~~g~ 544 (548)
+||+.++..... .....+ ++++|++++||++...+.
T Consensus 368 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~ 439 (447)
T 3dw8_B 368 MFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNL 439 (447)
T ss_dssp EEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCE
T ss_pred EEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEeccee
Confidence 999887653210 112223 489999999999877643
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=261.67 Aligned_cols=284 Identities=14% Similarity=0.169 Sum_probs=226.7
Q ss_pred ccCCCCCCceeEEeCCC---CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 125 GASSSSTSMTNTNFDGK---GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~---g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|.+.|.+++|+|+ |.+|++++.| .|+|||+.+........+..|...+.+++|+|+ +.+|++++.||.|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v 110 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD---GSKVFTASCDKTA 110 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC---CCEEEEEcCCCcE
Confidence 45789999999999999 6999998887 999999987332334677779999999999998 8899999999999
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEE--ecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccce
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW--VPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQ 278 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 278 (548)
++||++.. ...... .|...|++++| +|++. +|++++.||.|++||++..
T Consensus 111 ~iwd~~~~------~~~~~~-------~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~--------------- 161 (368)
T 3mmy_A 111 KMWDLSSN------QAIQIA-------QHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSS--------------- 161 (368)
T ss_dssp EEEETTTT------EEEEEE-------ECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCS---------------
T ss_pred EEEEcCCC------Cceeec-------cccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCC---------------
Confidence 99999862 222222 27899999999 78887 8999999999999999862
Q ss_pred eeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee--eecCCceEEEEEccCCCE-
Q 008939 279 FSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKY- 355 (548)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~l~~spdg~~- 355 (548)
.++..+..| ..+.++.+.+ ..+++++.|+.+++|+++........ ..+...+.++.+.++...
T Consensus 162 -----------~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 162 -----------NPMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp -----------SCSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred -----------cEEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC
Confidence 234444444 3566666654 47888999999999999876543322 223455677777666554
Q ss_pred ---EEEEeCCCeEEEEECCCc---eeEEeccCCCC------------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 356 ---ILTGGEDDLVQVWSMEDR---KVVAWGEGHNS------------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 356 ---l~sgs~dg~I~vwd~~~~---~~~~~~~~h~~------------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
+++++.|+.|++||++.. +.+..+.+|.. .|.+++|+| ++ .+|++++.|
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~------~~l~s~~~d 294 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-------VH------GTLATVGSD 294 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-------TT------CCEEEEETT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-------CC------CEEEEEccC
Confidence 999999999999999987 55677777776 799999999 88 789999999
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
+.|++||+++++++..+ .+|..+|++++|+|++
T Consensus 295 g~i~iwd~~~~~~~~~~-----------------------------------------------~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 295 GRFSFWDKDARTKLKTS-----------------------------------------------EQLDQPISACCFNHNG 327 (368)
T ss_dssp SCEEEEETTTTEEEEEC-----------------------------------------------CCCSSCEEEEEECTTS
T ss_pred CeEEEEECCCCcEEEEe-----------------------------------------------cCCCCCceEEEECCCC
Confidence 99999999988776543 3588899999999985
Q ss_pred --EEEEECCCeEEEEeCCC
Q 008939 498 --VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 498 --l~t~s~Dg~I~iW~~~~ 514 (548)
|++++.|+..+.|++..
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 99999998777666543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=269.59 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=216.3
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg 253 (548)
...+++++|+. ...+++++.+|.|++|++...... .+.+ .....|...|++++|+| ++. +|++|+.||
T Consensus 36 ~~~~~~~~~~~--~~~~~~~~~~g~i~v~~~~~~~~~-~~~~-------~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg 104 (402)
T 2aq5_A 36 DSGFCAVNPKF--MALICEASGGGAFLVLPLGKTGRV-DKNV-------PLVCGHTAPVLDIAWCPHNDN-VIASGSEDC 104 (402)
T ss_dssp SSCSEEECSSE--EEEEBCCSSSCCEEEEETTCCEEC-CTTC-------CCBCCCSSCEEEEEECTTCTT-EEEEEETTS
T ss_pred CCCcEEECCCe--EEEEEEEcCCCEEEEEECccCCCC-CCCC-------ceEecCCCCEEEEEeCCCCCC-EEEEEeCCC
Confidence 34567888872 123344788999999998652110 0111 01124899999999999 666 999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~ 332 (548)
.|++||+...+... ....++..+..|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 105 ~v~vw~~~~~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 165 (402)
T 2aq5_A 105 TVMVWEIPDGGLVL-------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165 (402)
T ss_dssp EEEEEECCTTCCSS-------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEEccCCCCcc-------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence 99999998632111 0125677888999999999999997 699999999999999999999
Q ss_pred EEEee--eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEec-cCCCCC-eEEEEEecCCCCCCCCCCcccee
Q 008939 333 LICGG--KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG-EGHNSW-VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 333 ~~~~~--~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~-~~h~~~-V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+|... +..+.|+| ++
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------ 232 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-------EG------ 232 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-------TT------
T ss_pred ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-------CC------
Confidence 99888 789999999999999999999999999999999999999888 788876 89999999 88
Q ss_pred EEEEEE---eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 409 YRFGSV---GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 409 ~~l~s~---~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
.+|+++ +.|+.|++||+++.+...... ...|.
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------------~~~~~ 267 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQ---------------------------------------------ELDTS 267 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCSEEE---------------------------------------------ECCCC
T ss_pred cEEEEeccCCCCceEEEEcCccccCCceEE---------------------------------------------eccCC
Confidence 788888 799999999998755311110 01356
Q ss_pred CCeeEEEEeCCe--EE-EEECCCeEEEEeCCCCCc---cc--cCCCCcE--EEecCCCCceEeeec
Q 008939 486 EPLSGLIFTQES--VL-TVCREGHIKIWMRPGVAE---SQ--SSSSETV--LSTSSKDKPLLSSKV 541 (548)
Q Consensus 486 ~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~~~~~---~~--~~~~~~v--~~~s~d~~~l~s~~~ 541 (548)
..|..++|+|+. |+ +++.||.|++|++..... .. ..+...+ ++++|++++++++..
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence 779999999973 54 556899999999987652 11 1233444 388999998887654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=278.41 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=193.5
Q ss_pred EEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC------CCcEEEEEeCCCcEEEEEcCCCC
Q 008939 191 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG------GDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 191 l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~------~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
|++++.|+.|+|||+.... .......... .|...|++++|+|+ +. +|++++.||+|+|||+....
T Consensus 176 laS~s~D~tI~iWd~~~~~--~~~~~~~~l~------~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTST--LHCVKVQTIV------HSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------CEEEEEEEEETTT--CCEEEEEEEE------ECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCS
T ss_pred hccCCCCceEEEEEccCCC--CCceEEEEEE------ecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCc
Confidence 3445577899999987521 0000001011 25788999999997 34 89999999999999997532
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEeeeecCCc
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGGKSYYGA 343 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~ 343 (548)
...... + ....+...+..|...|.+++|++++ .|++|+.||+|++||+++++ +...+.+|...
T Consensus 247 ~~~~~~--------~-------~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 247 TDVHVF--------K-------MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp SSSSEE--------E-------CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred cccccc--------e-------eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 110000 0 0124566788899999999999864 89999999999999998764 44567899999
Q ss_pred eEEE--EEccCC-CEEEEEeCCCeEEEEECCCceeEEeccCCCC--CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 344 LLCC--AWSMDG-KYILTGGEDDLVQVWSMEDRKVVAWGEGHNS--WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 344 v~~l--~~spdg-~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
|.+| +|+|++ ++|++|+.|++|+|||+++++++..+.+|.. .|.+++|+| ++ ..|++++.|+
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-------~~------~~l~s~~~d~ 377 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-------QI------YSYIYSDGAS 377 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-------TT------TEEEEECSSS
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-------Cc------CeEEEeCCCC
Confidence 9999 578888 8999999999999999999887777766653 588999999 88 6899999999
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
.|++||++++.++. .+.+|...|++|+|+|++
T Consensus 378 tv~lwd~~~~~~~~-----------------------------------------------~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 378 SLRAVPSRAAFAVH-----------------------------------------------PLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp EEEEEETTCTTCCE-----------------------------------------------EEEECSSCEEEEECCSSCC
T ss_pred cEEEEECcccccce-----------------------------------------------eeecCCCceEEEEeCCCCC
Confidence 99999998765432 344699999999999985
Q ss_pred -EEEEECCCeEEEEeCCCCCccccC------CCCcEE--EecCCCCce
Q 008939 498 -VLTVCREGHIKIWMRPGVAESQSS------SSETVL--STSSKDKPL 536 (548)
Q Consensus 498 -l~t~s~Dg~I~iW~~~~~~~~~~~------~~~~v~--~~s~d~~~l 536 (548)
|++|+.||+|++|++......... ....++ +++|+++.+
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 999999999999998664322110 111343 678998854
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=266.10 Aligned_cols=275 Identities=13% Similarity=0.198 Sum_probs=215.3
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-----ccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-----GKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
....|...|++++|+|+ ++.+|++++.+|.|++||+....... .+.+.. . ..|...|++++|+|++
T Consensus 123 ~~~~h~~~v~~l~~~p~--~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~------~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ--NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-L------RGHQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEEESSCCSEEEEETT--EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-E------ECCSSCCCCEEECTTS
T ss_pred EEEcCCCcEEEEEECCC--CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-e------cCCCCCeEEEEeCCCC
Confidence 34458889999999996 25689999999999999997621111 111111 1 1378899999999998
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCC
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDG 321 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg 321 (548)
..+|++|+.||.|++||+......... ..+...+..|...|.+++|+| ++.+|++++.|+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRV-------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGE-------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCce-------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 878999999999999999863211000 122456677889999999999 788999999999
Q ss_pred eEEEEeCCCC---eEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCC-ceeEEeccCCCCCeEEEEEecCCC
Q 008939 322 YLRVFDYSKE---QLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 322 ~v~vwd~~~~---~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~-~~~~~~~~~h~~~V~~v~~~p~~~ 396 (548)
.|++||++++ +.+..+..|...|++++|+|+++ +|++|+.|+.|++||+++ .+++..+.+|...|.+++|+|
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp--- 331 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP--- 331 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS---
T ss_pred eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC---
Confidence 9999999987 56777788999999999999997 688999999999999998 567888889999999999999
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
++. .+|++++.|+.|++||+........... -.-....
T Consensus 332 ----~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------~~~~~~~ 369 (430)
T 2xyi_A 332 ----HNE-----TILASSGTDRRLHVWDLSKIGEEQSTED---------------------------------AEDGPPE 369 (430)
T ss_dssp ----SCT-----TEEEEEETTSCCEEEEGGGTTCCCCHHH---------------------------------HHHCCTT
T ss_pred ----CCC-----CEEEEEeCCCcEEEEeCCCCccccCccc---------------------------------cccCCcc
Confidence 762 4799999999999999986332111000 0000123
Q ss_pred ceEEeecCCCCeeEEEEeCC---eEEEEECCCeEEEEeCCCC
Q 008939 477 PLVAHRVHTEPLSGLIFTQE---SVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 477 ~~~~~~~h~~~V~~l~fspd---~l~t~s~Dg~I~iW~~~~~ 515 (548)
.+..+.+|...|++++|+|+ .|++++.||.|+||++...
T Consensus 370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 370 LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 45566789999999999997 4899999999999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-30 Score=258.03 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=208.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCC-------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSG-------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
.-.|+|++|+|+ +.+|++|+.+. .|++|++..........+.....+ ....|...|.++++.+ . .
T Consensus 14 g~PV~sv~fs~d---g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~--~l~~~~~~v~s~~~~~--~-~ 85 (365)
T 4h5i_A 14 GYPAYGAKFLNN---DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF--ALEDNDDSPTAIDASK--G-I 85 (365)
T ss_dssp SSCEEEEEEEET---TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE--ECCTTSCCCCEEEEET--T-E
T ss_pred CCCEEEEEEeCC---CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE--EccCCCCceEEEEeCC--C-E
Confidence 347899999998 88899887533 599999876322211111111111 1223677888887754 3 5
Q ss_pred EEEE-----------eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 246 FVVG-----------HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 246 l~s~-----------~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+++| +.|+.+++|++............ ........++..+.+++|+|||++|
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------VDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------ECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee-----------------eceeecCCcccCEEEEEEcCCCCEE
Confidence 5554 45778999998753211000000 0001112234568899999999998
Q ss_pred EEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE--eccCCCCCeEEEE
Q 008939 315 ATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA--WGEGHNSWVSGVA 390 (548)
Q Consensus 315 ~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~--~~~~h~~~V~~v~ 390 (548)
++++ .|+.|+|||+++++++..+. |...|.+++|+|||++|++++.+ .+++|+..+++.+. ...+|...|.+++
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 7655 68999999999999988876 77889999999999999999855 56677777666543 4457899999999
Q ss_pred EecCCCCCCCCCCccceeEEEEEEeCCC----eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCC
Q 008939 391 FDSYWSQPNSDGTAETVMYRFGSVGQDT----RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPA 466 (548)
Q Consensus 391 ~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~ 466 (548)
|+| || .++++++.|+ .+++||+........
T Consensus 227 fsp-------dg------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~--------------------------------- 260 (365)
T 4h5i_A 227 FIA-------DD------TVLIAASLKKGKGIVLTKISIKSGNTSVL--------------------------------- 260 (365)
T ss_dssp EEE-------TT------EEEEEEEESSSCCEEEEEEEEETTEEEEE---------------------------------
T ss_pred EcC-------CC------CEEEEEecCCcceeEEeecccccceecce---------------------------------
Confidence 999 99 7899999887 688899877654321
Q ss_pred CceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc---ccCCCCcEE--EecCCCCceEee
Q 008939 467 PSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES---QSSSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 467 ~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~--~~s~d~~~l~s~ 539 (548)
....+.+|...|++|+|+||+ |++|+.|++|+|||+.+.+.. ...|...|. +||||+++||++
T Consensus 261 ----------~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 261 ----------RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp ----------EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ----------eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 122456789999999999984 999999999999999887632 346888887 889999999999
Q ss_pred ecccc
Q 008939 540 KVVTS 544 (548)
Q Consensus 540 ~~~g~ 544 (548)
...+.
T Consensus 331 S~D~t 335 (365)
T 4h5i_A 331 SAANT 335 (365)
T ss_dssp ETTSE
T ss_pred eCCCe
Confidence 87654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=260.47 Aligned_cols=257 Identities=17% Similarity=0.280 Sum_probs=214.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|++++|+|+|.+|++++.| .|+|||++++. .+..+..|...+.++.+++ ..|++|+.|+.++
T Consensus 140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~~-----~~l~sgs~d~~i~ 212 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNS-----YILSSGSRSGHIH 212 (420)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-----TEEEEEETTSEEE
T ss_pred EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeCC-----CEEEEEeCCCcee
Confidence 34566788999999999999999999988 99999999854 8889998999999988864 4899999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+||.... ........ .|...+..+.|+|++. ++++++.|+.|++|+......
T Consensus 213 ~~d~~~~-----~~~~~~~~------~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~---------------- 264 (420)
T 4gga_A 213 HHDVRVA-----EHHVATLS------GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEG---------------- 264 (420)
T ss_dssp EEETTSS-----SCEEEEEE------CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSS----------------
T ss_pred Eeeeccc-----ceeeEEec------ccccceeeeeecCCCC-eeeeeeccccceEEeeccccc----------------
Confidence 9998752 12211111 3789999999999999 999999999999999976321
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEE--ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATV--GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
....+.....|...|.+++|+|+ ..+++++ +.|+.|++||+.+++++..+..+ ..+.++.|+|+++.|++
T Consensus 265 ------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 265 ------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELIS 337 (420)
T ss_dssp ------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred ------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEE
Confidence 12345566778899999999995 4566654 47999999999999998888755 56899999999998887
Q ss_pred Ee--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 359 GG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 359 gs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| || .+|+|++.|++|+|||+.........
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-------dg------~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-------DG------ATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEecCCeEEEEECCCCCccchh
Confidence 65 789999999999999999999999999999999 99 78999999999999999876554433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=266.55 Aligned_cols=263 Identities=16% Similarity=0.252 Sum_probs=218.7
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
.+...+.|+.| + +.+|++|+.||.|++||+.+ ++... .. ..|...|++++| ++. +|++|+
T Consensus 131 ~~~~~v~~~~~--d---~~~l~~g~~dg~i~iwd~~~-----~~~~~-~~------~~h~~~v~~l~~--~~~-~l~sg~ 190 (435)
T 1p22_A 131 ETSKGVYCLQY--D---DQKIVSGLRDNTIKIWDKNT-----LECKR-IL------TGHTGSVLCLQY--DER-VIITGS 190 (435)
T ss_dssp SSCCCEEEEEC--C---SSEEEEEESSSCEEEEESSS-----CCEEE-EE------CCCSSCEEEEEC--CSS-EEEEEE
T ss_pred CCCCcEEEEEE--C---CCEEEEEeCCCeEEEEeCCC-----CeEEE-EE------cCCCCcEEEEEE--CCC-EEEEEc
Confidence 34556888877 3 67999999999999999876 22221 11 138899999999 566 999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.||.|++||+.+ ...+..+..|...|.+++|++ .+|++++.||.|++||+.+
T Consensus 191 ~dg~i~vwd~~~--------------------------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 191 SDSTVRVWDVNT--------------------------GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp TTSCEEEEESSS--------------------------CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred CCCeEEEEECCC--------------------------CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence 999999999986 244667778899999999974 5999999999999999988
Q ss_pred CeEE---EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 331 EQLI---CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 331 ~~~~---~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
++.+ ..+.+|...|.+++| ++++|++|+.|+.|++||+++++++..+.+|...|.++.|++
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-------------- 306 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-------------- 306 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--------------
T ss_pred CCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC--------------
Confidence 7654 567789999999999 788999999999999999999999999999999999999964
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
.+|++++.|+.|++||+++++++..+ .+|...
T Consensus 307 -~~l~~g~~dg~i~iwd~~~~~~~~~~-----------------------------------------------~~h~~~ 338 (435)
T 1p22_A 307 -RLVVSGSSDNTIRLWDIECGACLRVL-----------------------------------------------EGHEEL 338 (435)
T ss_dssp -TEEEEEETTSCEEEEETTTCCEEEEE-----------------------------------------------CCCSSC
T ss_pred -CEEEEEeCCCeEEEEECCCCCEEEEE-----------------------------------------------eCCcCc
Confidence 58999999999999999988765443 358889
Q ss_pred eeEEEEeCCeEEEEECCCeEEEEeCCCCC-----------ccccCCCCcEEEecCCCCceEeeeccccc
Q 008939 488 LSGLIFTQESVLTVCREGHIKIWMRPGVA-----------ESQSSSSETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 488 V~~l~fspd~l~t~s~Dg~I~iW~~~~~~-----------~~~~~~~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
|.+++|.+..|++++.||.|++||+.... .....|...|.++..++++|+++...|.+
T Consensus 339 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 339 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTI 407 (435)
T ss_dssp EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEE
T ss_pred EEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEE
Confidence 99999988889999999999999975433 12336777777777799999999877654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=253.92 Aligned_cols=299 Identities=12% Similarity=0.019 Sum_probs=211.4
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwd 204 (548)
..+|...|.+++|+|+|++++++..+.++||+++... .+....+. .+..+++.+. ++.+ ++++.++.|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMR--HLSKVRMLHR---TNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECS--CCCEEEECTT---SSEEEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecC--CeEEEEEcCC---CCEEEEEECCccEEEEEE
Confidence 3678999999999999999999988899999988633 44444433 5777888877 4455 6678889999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+.+ ++ ...... +...|.+++|+++. ++++ .|+.|++||+.........+
T Consensus 88 ~~~-----~~-~~~~~~-------~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~-------------- 136 (355)
T 3vu4_A 88 DVK-----KQ-DVSRIK-------VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDD-------------- 136 (355)
T ss_dssp TTT-----TE-EEEEEE-------CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCC--------------
T ss_pred CCC-----Cc-EEEEEE-------CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEe--------------
Confidence 876 22 222222 46689999998763 4443 47899999998631221111
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEE--EECCCeEEEEeCCCCe----------------EEEeeeecCCceEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLAT--VGRDGYLRVFDYSKEQ----------------LICGGKSYYGALLC 346 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~v~vwd~~~~~----------------~~~~~~~~~~~v~~ 346 (548)
.. ....+++++ .++++ ++.||.|++||+.+++ .+..+.+|.+.|.+
T Consensus 137 -----------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~ 200 (355)
T 3vu4_A 137 -----------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM 200 (355)
T ss_dssp -----------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEE
T ss_pred -----------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEE
Confidence 11 233455666 56666 5789999999999765 26778899999999
Q ss_pred EEEccCCCEEEEEeCCCe-EEEEECCCceeEEecc-C-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 347 CAWSMDGKYILTGGEDDL-VQVWSMEDRKVVAWGE-G-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 347 l~~spdg~~l~sgs~dg~-I~vwd~~~~~~~~~~~-~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++|+|++++|++|+.|+. |++||+++++++..+. + |...|.+++|+| || .+|++++.|+.|++|
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-------~~------~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-------DG------SKLAVVSDKWTLHVF 267 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-------TS------CEEEEEETTCEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-------CC------CEEEEEECCCEEEEE
Confidence 999999999999999998 9999999999999998 6 999999999999 99 799999999999999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEE
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV 501 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~ 501 (548)
|++.+.......... . +.+.-....|. ...+.++ ..+..+...++|+++. |+++
T Consensus 268 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 268 EIFNDQDNKRHALKG----W-INMKYFQSEWS-----------LCNFKLS--------VDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp ESSCCSCCCSEETTT----T-EECCCCCCSSC-----------SEEEECC--------CCTTCCCCEEEESSSSEEEEEE
T ss_pred EccCCCCcccccccc----e-eeccccccccc-----------eeEEEec--------cCCCCCceEEEEeCCCCEEEEE
Confidence 998764221111100 0 11100000110 0000010 1123345779999974 9999
Q ss_pred ECCCeEEEEeCCCC
Q 008939 502 CREGHIKIWMRPGV 515 (548)
Q Consensus 502 s~Dg~I~iW~~~~~ 515 (548)
+.||.+++|++...
T Consensus 324 ~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 324 PHTRMIETFKVVFD 337 (355)
T ss_dssp TTTTEEEEEEEEEE
T ss_pred eCCCeEEEEEEEcC
Confidence 99999999997643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=264.78 Aligned_cols=262 Identities=13% Similarity=0.223 Sum_probs=215.4
Q ss_pred ccccCCCCCCceeEEeCCC-CCEEEEecCC-eEEEEEccC--------CCCCCeEEEecCCCCceEEEecCCCCCCc-eE
Q 008939 123 SLGASSSSTSMTNTNFDGK-GTYIIFNVGD-AIFISDLNS--------QDKDPIKSIHFSNSNPVCHAFDQDAKDGH-DL 191 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~-g~~l~~~~~d-~v~vwd~~~--------~~~~~i~~~~~~~~~~~~~~~~p~~~~~~-~l 191 (548)
.....+|.+.|.+++|+|+ +.++++++.+ .|+|||+.. +...++..+..|...+.+++|+|+ +. +|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l 197 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN---LNGYL 197 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT---STTEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC---CCCeE
Confidence 3455678999999999998 6778887777 999999986 224578888889999999999998 55 89
Q ss_pred EEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 192 LIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 192 ~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
++|+.||.|++||+..... ....... ......|...|.+++|+|++..+|++++.||.|++||++....
T Consensus 198 ~s~~~dg~i~vwd~~~~~~--~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------ 266 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPK--EHRVIDA---KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------ 266 (430)
T ss_dssp EEECTTSCEEEEETTSCCB--GGGEEEC---SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------
T ss_pred EEEeCCCeEEEEeCCCCCC--CCceecc---ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------
Confidence 9999999999999986211 1111100 0011237889999999996555999999999999999986321
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EEEEEECCCeEEEEeCCC-CeEEEeeeecCCceEEEEE
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT-YLATVGRDGYLRVFDYSK-EQLICGGKSYYGALLCCAW 349 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~l~~ 349 (548)
..++..+..|...|++++|+|+++ +|++++.||.|++||+++ .+.+..+..|...|.+++|
T Consensus 267 -----------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 267 -----------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329 (430)
T ss_dssp -----------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred -----------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence 235666778889999999999886 789999999999999997 5667888889999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEECCC--------------ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-EEEE
Q 008939 350 SMDGK-YILTGGEDDLVQVWSMED--------------RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-RFGS 413 (548)
Q Consensus 350 spdg~-~l~sgs~dg~I~vwd~~~--------------~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~l~s 413 (548)
+|+++ +|++++.|+.|+|||+.. .+.+..+.+|...|++++|+| ++ . +|++
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-------~~------~~~l~s 396 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-------NE------PWIICS 396 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-------SS------TTEEEE
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-------CC------CCEEEE
Confidence 99995 799999999999999987 367778889999999999999 77 5 8999
Q ss_pred EeCCCeEEEEECCCC
Q 008939 414 VGQDTRLLLWDLEMD 428 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~ 428 (548)
++.|+.|++|++...
T Consensus 397 ~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 397 VSEDNIMQVWQMAEN 411 (430)
T ss_dssp EETTSEEEEEEECHH
T ss_pred EECCCCEEEeEcccc
Confidence 999999999998754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=255.47 Aligned_cols=269 Identities=10% Similarity=0.079 Sum_probs=223.1
Q ss_pred ccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 307 (548)
.|...|++++|+|++. +|++++.||.|++||+..... ..+...+..|...|.+++|
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~~ 64 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAK-----------------------NVDLLQSLRYKHPLLCCNF 64 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTT-----------------------EEEEEEEEECSSCEEEEEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCc-----------------------cccceeeeecCCceEEEEE
Confidence 4899999999999998 999999999999999986210 1124455678899999999
Q ss_pred CCCCC-EEEEEECCCeEEEEeC-CCCeEEEeeee--cCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---------ce
Q 008939 308 STDGT-YLATVGRDGYLRVFDY-SKEQLICGGKS--YYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---------RK 374 (548)
Q Consensus 308 sp~g~-~l~s~~~dg~v~vwd~-~~~~~~~~~~~--~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---------~~ 374 (548)
+|+++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++ ++
T Consensus 65 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 99999 9999999999999999 87765 56777 999999999999 99999999999999999998 77
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC-CeEEe---eeecCCCCCCceecC-CC
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM-DEIVV---PLRRGPLGGSPTFST-GS 449 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~-~~~~~---~~~~~~~~~~~~~~~-~~ 449 (548)
++..+. |...|.+++|+| + .+++++.|+.|++||+++ +.... .......+..+.+++ ++
T Consensus 143 ~~~~~~-~~~~v~~~~~~~-------~--------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 143 NSNNTK-VKNKIFTMDTNS-------S--------RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp CSSSSS-SCCCEEEEEECS-------S--------EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred eeeEEe-eCCceEEEEecC-------C--------cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 777777 999999999998 4 399999999999999998 54321 112224455666766 54
Q ss_pred CccccCCeeeecccCCCCceeecCCC------CceEEeecCCC---------CeeEEEEeCCe--EEEEECCCeEEEEeC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKL------SPLVAHRVHTE---------PLSGLIFTQES--VLTVCREGHIKIWMR 512 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~------~~~~~~~~h~~---------~V~~l~fspd~--l~t~s~Dg~I~iW~~ 512 (548)
..+.++..++.+++|++... .++..+..|.. .|++++|+|+. |++++.||.|++||+
T Consensus 207 ------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 207 ------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp ------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred ------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 46678888999999999876 88888988866 99999999974 999999999999999
Q ss_pred CCCCc--cccCC-CCcEEEecCCCCceEeeecccc
Q 008939 513 PGVAE--SQSSS-SETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 513 ~~~~~--~~~~~-~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
..... ....| ...+.++.|++++|+++...|.
T Consensus 281 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 281 QTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp TTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred ccHhHhhhhhcccCCCceEecCCCCeEEEEecCCc
Confidence 87663 23355 7778766699999999987765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=287.01 Aligned_cols=257 Identities=17% Similarity=0.255 Sum_probs=213.4
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
...+|.+.|.+++|+|+|+++++++.| .|+|||+..+....+..+..|...|.+++|+|+. ++.+|++|+.||.|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEEEE
Confidence 346899999999999999999998877 9999999854455778888899999999999863 26789999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
|++.... ..... . ..|...|++++|+|+ +. +|++|+.||.|++||++...
T Consensus 83 d~~~~~~---~~~~~-~------~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~----------------- 134 (753)
T 3jro_A 83 KEENGRW---SQIAV-H------AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG----------------- 134 (753)
T ss_dssp EEETTEE---EEEEE-E------CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSS-----------------
T ss_pred ECCCCcc---ccccc-c------cCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCC-----------------
Confidence 9986210 01111 1 137899999999999 77 99999999999999998632
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECC-------------CCCEEEEEECCCeEEEEeCCCC----eEEEeeeecCCce
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFST-------------DGTYLATVGRDGYLRVFDYSKE----QLICGGKSYYGAL 344 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v 344 (548)
......+..|...|.+++|+| ++.+|++++.||.|++||++++ .++..+.+|...|
T Consensus 135 -------~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 135 -------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp -------CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred -------CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence 123445667889999999999 5899999999999999999876 5667788899999
Q ss_pred EEEEEccC---CCEEEEEeCCCeEEEEECCCce-----eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC
Q 008939 345 LCCAWSMD---GKYILTGGEDDLVQVWSMEDRK-----VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ 416 (548)
Q Consensus 345 ~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~ 416 (548)
.+++|+|+ +++|++++.|+.|++||+++++ .+.....|...|++++|+| +| .+|++++.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------dg------~~l~s~s~ 274 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-------SG------NVLALSGG 274 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-------TT------CCEEEECS
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-------CC------CEEEEEcC
Confidence 99999999 8999999999999999999864 3344456899999999999 98 78999999
Q ss_pred CCeEEEEECCCCeE
Q 008939 417 DTRLLLWDLEMDEI 430 (548)
Q Consensus 417 Dg~i~lwd~~~~~~ 430 (548)
||.|++||+..+..
T Consensus 275 Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 275 DNKVTLWKENLEGK 288 (753)
T ss_dssp SSCEECCBCCSSSC
T ss_pred CCEEEEEecCCCCC
Confidence 99999999986543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=250.14 Aligned_cols=278 Identities=9% Similarity=0.119 Sum_probs=200.2
Q ss_pred EEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE
Q 008939 155 ISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT 234 (548)
Q Consensus 155 vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 234 (548)
||++.. ..++.....|...+.|++|+|+ +.+|++|+.+| +++||+.. .+.... . +...+.
T Consensus 3 i~s~~~--~~~~~~~~~h~~~V~~v~fs~d---g~~la~g~~~~-~~iw~~~~-----~~~~~~-~--------~~~~~~ 62 (355)
T 3vu4_A 3 LGSMIT--RNPIVPENHVSNPVTDYEFNQD---QSCLILSTLKS-FEIYNVHP-----VAHIMS-Q--------EMRHLS 62 (355)
T ss_dssp ------------------CCCCCEEEECTT---SSEEEEECSSE-EEEEEETT-----EEEEEE-E--------ECSCCC
T ss_pred cccccc--cCCccccccCCCceEEEEECCC---CCEEEEEcCCE-EEEEecCC-----cceeee-e--------ecCCeE
Confidence 566666 3477777778999999999999 77888887765 78999765 121111 1 122478
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 235 SVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 235 ~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
.++|.++++.++++++.|+.|++||+.+. .++..+. |...|.+++|+++. +
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--------------------------~~~~~~~-~~~~v~~v~~~~~~--~ 113 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKK--------------------------QDVSRIK-VDAPVKDLFLSREF--I 113 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTT--------------------------EEEEEEE-CSSCEEEEEECSSE--E
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCC--------------------------cEEEEEE-CCCceEEEEEcCCE--E
Confidence 88999988844577888999999998762 2334444 45789999998864 4
Q ss_pred EEEECCCeEEEEeCCCC-eEEEeeeecCCceEEEEEccCCCEEEE--EeCCCeEEEEECCCce----------------e
Q 008939 315 ATVGRDGYLRVFDYSKE-QLICGGKSYYGALLCCAWSMDGKYILT--GGEDDLVQVWSMEDRK----------------V 375 (548)
Q Consensus 315 ~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s--gs~dg~I~vwd~~~~~----------------~ 375 (548)
+++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.||.|++||+++++ +
T Consensus 114 ~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~ 187 (355)
T 3vu4_A 114 VVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGK 187 (355)
T ss_dssp EEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------C
T ss_pred EEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcc
Confidence 444 4889999999988 66666654 445567777 56666 5789999999999865 2
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe-EEEEECCCCeEEeeeecCCCCCCceecCCCCcccc
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR-LLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHW 454 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (548)
+..+.+|...|++++|+| || .+|++++.|++ |++||+++++++..+..
T Consensus 188 ~~~~~~h~~~v~~~~~s~-------~g------~~l~s~s~d~~~v~iwd~~~~~~~~~~~~------------------ 236 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNR-------KS------DMVATCSQDGTIIRVFKTEDGVLVREFRR------------------ 236 (355)
T ss_dssp CEEECCCSSCEEEEEECT-------TS------SEEEEEETTCSEEEEEETTTCCEEEEEEC------------------
T ss_pred cEEEEccCCceEEEEECC-------CC------CEEEEEeCCCCEEEEEECCCCcEEEEEEc------------------
Confidence 678899999999999999 99 79999999998 99999999887765542
Q ss_pred CCeeeecccCCCCceeecCCCCceEEeec-CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcccc-----------
Q 008939 455 DNVCPVGTLQPAPSMRDVPKLSPLVAHRV-HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQS----------- 520 (548)
Q Consensus 455 d~~~~~g~~~~~~~~~d~~~~~~~~~~~~-h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~----------- 520 (548)
+ |...|++++|+|+ .|++++.|++|++||+........
T Consensus 237 ----------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 237 ----------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp ----------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred ----------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 3 8899999999997 499999999999999875431100
Q ss_pred ----------------CCCCcEEEecCCCCceEeeecccccc
Q 008939 521 ----------------SSSETVLSTSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 521 ----------------~~~~~v~~~s~d~~~l~s~~~~g~~~ 546 (548)
.....++++++|+++|+++...|.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 01125679999999999998776543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=249.60 Aligned_cols=271 Identities=11% Similarity=0.171 Sum_probs=216.9
Q ss_pred ccCcceEEEEEecCC---CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 228 VNNSRCTSVTWVPGG---DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
.|...|++++|+|++ . +|++|+.||.|++||+...+ ......+..|...|.+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSG------------------------QTIPKAQQMHTGPVLD 91 (368)
T ss_dssp CCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTS------------------------CEEEEEEEECSSCEEE
T ss_pred CCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCC------------------------ceeEEEeccccCCEEE
Confidence 489999999999995 6 99999999999999998521 1223677889999999
Q ss_pred EEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE--ccCCCEEEEEeCCCeEEEEECCCceeEEeccCC
Q 008939 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW--SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 305 ~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~--spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h 382 (548)
++|+|++++|++++.||.|++||+++++.+. +..|...|.+++| +|++++|++++.|+.|++||+++++++..+..|
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999998776 5669999999999 899999999999999999999999988888865
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC---CCCCCceecCCCCccccCCeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTFSTGSQSAHWDNVCP 459 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~ 459 (548)
. .+.++.+.+ ..+++++.|+.+++||++........... .....+.+...... ....+.
T Consensus 171 ~-~~~~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 232 (368)
T 3mmy_A 171 E-RCYCADVIY---------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--KPTGFA 232 (368)
T ss_dssp S-CEEEEEEET---------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--CEEEEE
T ss_pred C-CceEEEecC---------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--CCCeEE
Confidence 4 677777765 36888889999999999887554333221 11122222222210 112267
Q ss_pred ecccCCCCceeecCCC---CceEEeecCCC------------CeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--ccc
Q 008939 460 VGTLQPAPSMRDVPKL---SPLVAHRVHTE------------PLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQS 520 (548)
Q Consensus 460 ~g~~~~~~~~~d~~~~---~~~~~~~~h~~------------~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~ 520 (548)
.+..++.+++|++... .++..+.+|.. .|++++|+|+ .|++++.||.|++||+..... ...
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 8888999999999887 56778888876 7999999997 499999999999999987653 233
Q ss_pred CCCCcEE--EecCCCCceEeeecc
Q 008939 521 SSSETVL--STSSKDKPLLSSKVV 542 (548)
Q Consensus 521 ~~~~~v~--~~s~d~~~l~s~~~~ 542 (548)
.|...+. +|+||+++|+++...
T Consensus 313 ~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CCSSCEEEEEECTTSSCEEEEECC
T ss_pred CCCCCceEEEECCCCCeEEEEecc
Confidence 5666665 889999999999765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-28 Score=245.19 Aligned_cols=330 Identities=17% Similarity=0.161 Sum_probs=247.3
Q ss_pred EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceE-EEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 144 YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDL-LIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 144 ~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
++++++.+ .|++||+.++. .+..+..+ ..+.+++|+|+ +..| +++..++.|++||+.+. ++.....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~d---g~~l~~~~~~d~~i~v~d~~~~------~~~~~~~ 71 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPD---GTKVYVANAHSNDVSIIDTATN------NVIATVP 71 (391)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT---SSEEEEEEGGGTEEEEEETTTT------EEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCe--EEEEeecC-CCcceEEECCC---CCEEEEECCCCCeEEEEECCCC------eEEEEEE
Confidence 45556655 99999999754 67777655 46999999999 6666 56668999999998751 2222222
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
+...+.+++|+|+++.+++++..|+.|++||+... ..+..+.. ...
T Consensus 72 -------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--------------------------~~~~~~~~-~~~ 117 (391)
T 1l0q_A 72 -------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------------------------TVAGTVKT-GKS 117 (391)
T ss_dssp -------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------------------EEEEEEEC-SSS
T ss_pred -------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC--------------------------eEEEEEeC-CCC
Confidence 24489999999999944456667899999999862 12223332 357
Q ss_pred eEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE-EEEeCCCeEEEEECCCceeEEec
Q 008939 302 INSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 302 v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++++.+..+
T Consensus 118 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 196 (391)
T 1l0q_A 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV 196 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 8999999999977 67778999999999999988887765 457999999999987 57778999999999999888777
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCC
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDN 456 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 456 (548)
. +...+.+++|+| +| .+|++++ .|+.|++||+++++.+..+..+.....+.+++++. .
T Consensus 197 ~-~~~~~~~~~~~~-------~g------~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~-----~ 257 (391)
T 1l0q_A 197 K-VEAAPSGIAVNP-------EG------TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK-----K 257 (391)
T ss_dssp E-CSSEEEEEEECT-------TS------SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS-----E
T ss_pred e-cCCCccceEECC-------CC------CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCC-----E
Confidence 6 667899999999 88 5677766 68999999999999988887765556677777652 1
Q ss_pred eeeecccCCCCceeecCCCCceEEeecCCCCee---EEE------------EeCC------------eEEEEECCCeEEE
Q 008939 457 VCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS---GLI------------FTQE------------SVLTVCREGHIKI 509 (548)
Q Consensus 457 ~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~---~l~------------fspd------------~l~t~s~Dg~I~i 509 (548)
.+..+..+..+++||+...+.+..+..|..+.. .+. |+.+ .+...+.|..+++
T Consensus 258 l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 224556778899999999888888877755421 122 2221 1556678899999
Q ss_pred EeCCCCCccccCCCCcEEEecCCCCceEeeec
Q 008939 510 WMRPGVAESQSSSSETVLSTSSKDKPLLSSKV 541 (548)
Q Consensus 510 W~~~~~~~~~~~~~~~v~~~s~d~~~l~s~~~ 541 (548)
|++..+.. ..+......++++|.+.++.+.
T Consensus 338 W~~~~g~~--~~~~~~~~~~~~~g~y~~~~~~ 367 (391)
T 1l0q_A 338 WDFGDGSS--SKKQNPTHTYSETGIYTVRLTV 367 (391)
T ss_dssp EECSSSCE--ECSSSCEECCSSCEEEEEEEEE
T ss_pred EECCCCcc--cCcCCCeEEeCCCceEEEEEEE
Confidence 99976553 2334455678888888776653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=278.16 Aligned_cols=255 Identities=17% Similarity=0.290 Sum_probs=207.2
Q ss_pred EEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC--CCc
Q 008939 167 KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG--GDG 244 (548)
Q Consensus 167 ~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~--~~~ 244 (548)
..+..|...|++++|+|+ +.+|++|+.||.|++||+.... .+ ..... ..|...|++++|+|+ +.
T Consensus 3 ~~l~gH~~~V~~l~~s~d---g~~latg~~dg~I~vwd~~~~~---~~-~~~~l------~~h~~~V~~l~~s~~~~~~- 68 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYY---GKRLATCSSDKTIKIFEVEGET---HK-LIDTL------TGHEGPVWRVDWAHPKFGT- 68 (753)
T ss_dssp -----CCCCEEEECCCSS---SCCEEEEETTTEEEEEEEETTE---EE-EEEEE------CCCSSCEEEEEECCTTSCS-
T ss_pred eecccCcceeEEEEECCC---CCeEEEEECCCcEEEEecCCCC---Cc-cceec------cCCcCceEEEEecCCCCCC-
Confidence 345678899999999998 7899999999999999987411 11 11111 148899999999988 77
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC--CCEEEEEECCCe
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD--GTYLATVGRDGY 322 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~~~dg~ 322 (548)
+|++|+.||.|++||+.... ...+..+..|...|.+++|+|+ +++|++++.||.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGR------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEEEETTSCEEEEEEETTE------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred EEEEEeCCCeEEEEECCCCc------------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 99999999999999988621 1245666778899999999998 999999999999
Q ss_pred EEEEeCCCCe--EEEeeeecCCceEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCc----eeEEeccCCC
Q 008939 323 LRVFDYSKEQ--LICGGKSYYGALLCCAWSM-------------DGKYILTGGEDDLVQVWSMEDR----KVVAWGEGHN 383 (548)
Q Consensus 323 v~vwd~~~~~--~~~~~~~~~~~v~~l~~sp-------------dg~~l~sgs~dg~I~vwd~~~~----~~~~~~~~h~ 383 (548)
|++||++++. ....+..|...|.+++|+| ++++|++|+.|+.|++||++++ .++..+.+|.
T Consensus 125 I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~ 204 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (753)
T ss_dssp EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred EEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence 9999998773 3445678999999999999 5899999999999999999876 5677888999
Q ss_pred CCeEEEEEecCCCCCCCC---CCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 384 SWVSGVAFDSYWSQPNSD---GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~d---g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
..|.+++|+| + + .+|++++.|+.|++||+++++.....
T Consensus 205 ~~V~~l~~sp-------~~~~~------~~l~s~s~Dg~I~iwd~~~~~~~~~~-------------------------- 245 (753)
T 3jro_A 205 DWVRDVAWSP-------TVLLR------SYLASVSQDRTCIIWTQDNEQGPWKK-------------------------- 245 (753)
T ss_dssp SCEEEEEECC-------CCSSS------EEEEEEESSSCEEEEEESSSSSCCBC--------------------------
T ss_pred CcEEEEEecc-------CCCCC------CEEEEEecCCEEEEecCCCCCCccee--------------------------
Confidence 9999999999 8 7 79999999999999999875421100
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~ 514 (548)
.+.....|...|++++|+|++ |++++.||.|++|++..
T Consensus 246 ----------------~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 246 ----------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ----------------CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ----------------EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 111123578899999999974 99999999999999874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=239.41 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=191.5
Q ss_pred eEEeCCCCC---EEEEecCCeEEEEEccCC-CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 135 NTNFDGKGT---YIIFNVGDAIFISDLNSQ-DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 135 ~~~~~~~g~---~l~~~~~d~v~vwd~~~~-~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.+-|-..|- .|++++...|++|+..+. +.+.+++.+|+...|..++|.|+..+ ++.++.-+ +.+=+++.-.-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~--~~~~~v~sla~ 119 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN--LVCVALGN--LEIREIRALFC 119 (356)
T ss_dssp EEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS--CEEEEECS--SSEEEEEEECC
T ss_pred eeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc--eeeeeecc--ccccceEEEEE
Confidence 444444333 677788889999998875 23689999999999999999998654 44444332 22222221111
Q ss_pred ccc----cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 211 DVG----KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 211 ~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.+. ++..... .|...|..+ ++++ ++.++. .|+.|++|++..++
T Consensus 120 spd~~~~~~~l~s~-------g~~~~v~~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG-------------------- 168 (356)
T 2w18_A 120 SSDDESEKQVLLKS-------GNIKAVLGL---TKRR-LVSSSGTLSDQQVEVMTFAEDG-------------------- 168 (356)
T ss_dssp ------CCEEEEEE-------EEEEEEEEE---TTTE-EEEEESSSTTCEEEEEEECTTS--------------------
T ss_pred CCCccccccEEEeC-------CCeEEEEec---CCCc-EEEecccCCCCcEEEEEECCCC--------------------
Confidence 111 1111110 123334443 4443 444422 48888888885432
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEECCCeEEEEeCCCCeEEEeeeecC---CceEEEEEccCCCEE--
Q 008939 285 RYSKSNPIARWHICQGSINSIAFST---DGTYLATVGRDGYLRVFDYSKEQLICGGKSYY---GALLCCAWSMDGKYI-- 356 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~---~~v~~l~~spdg~~l-- 356 (548)
+.+..+..|...+..++|++ ++.+|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|+++
T Consensus 169 -----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 169 -----GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp -----CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred -----ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence 34556678888999999999 77999999999999999999999999998654 367788999999876
Q ss_pred ----------EEEeCCCeEEEEECCCceeEEec-----cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 357 ----------LTGGEDDLVQVWSMEDRKVVAWG-----EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 357 ----------~sgs~dg~I~vwd~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
++|+.|++|++||..+++.+..+ .+|...+.+..+ ++ .++++++.|++|+
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---------sg------~~lASgS~DgTIk 308 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---------KD------HCAAAILTSGTIA 308 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---------ET------TEEEEEETTSCEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---------CC------CEEEEEcCCCcEE
Confidence 56888999999999999887655 367666554444 33 5899999999999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee-EEEEeCC--eE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS-GLIFTQE--SV 498 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~-~l~fspd--~l 498 (548)
|||+.+++++.++. +|...+. .++|+|| .|
T Consensus 309 IWDl~tGk~l~tL~-----------------------------------------------gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 309 IWDLLLGQCTALLP-----------------------------------------------PVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EEETTTCSEEEEEC-----------------------------------------------CC--CCCCEEEECSSSSEE
T ss_pred EEECCCCcEEEEec-----------------------------------------------CCCCCeEEEEEECCCCCEE
Confidence 99999999877654 4665544 6899998 49
Q ss_pred EEEECCCeEEEEeC
Q 008939 499 LTVCREGHIKIWMR 512 (548)
Q Consensus 499 ~t~s~Dg~I~iW~~ 512 (548)
++|+.|++|||||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999995
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=252.37 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=183.3
Q ss_pred EEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecc--ccc
Q 008939 136 TNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQL--QDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~--~~~ 212 (548)
..+.+++.++++++.| .|++||++++. .+..+. ...+.++.|+|. +++++.|+.|++|+..... .+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEET
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEeec
Confidence 3445678889998888 99999999855 676666 346777788876 9999999999999877421 010
Q ss_pred -ccceeeeeeeccCCcccCcceEEEEEec--CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 -GKKLVGAHHYNKDGSVNNSRCTSVTWVP--GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~v~~l~~~p--~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
...+..... ..|...|.+++|+| ++. +|++++.||.|++||++...
T Consensus 112 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~------------------------- 160 (343)
T 3lrv_A 112 KTNKVLREIE-----VDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS------------------------- 160 (343)
T ss_dssp TTCCEEEEEE-----CCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC-------------------------
T ss_pred CCcceeEEee-----cCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc-------------------------
Confidence 111111110 12567899999999 888 99999999999999998621
Q ss_pred CCeeEe-eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE-Eeeee-cCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 290 NPIARW-HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI-CGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 290 ~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
.+... ..|...|.+++|+|++++|++|+.||.|++||+++++.+ ..+.. |.+.|.+++|+|++.+|+++++ +.|+
T Consensus 161 -~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~ 238 (343)
T 3lrv_A 161 -QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVV 238 (343)
T ss_dssp -EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEE
T ss_pred -EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEE
Confidence 12222 223467999999999999999999999999999999877 77887 9999999999999999999994 5999
Q ss_pred EEECCCceeEEeccC---CCCCeE--EEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEEECCCCe
Q 008939 367 VWSMEDRKVVAWGEG---HNSWVS--GVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLWDLEMDE 429 (548)
Q Consensus 367 vwd~~~~~~~~~~~~---h~~~V~--~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg~i~lwd~~~~~ 429 (548)
+||+++.+.+..+.. |...+. +++|+| +| .+|++++. |+.|++|++....
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g------~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-------SG------KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-------TS------SEEEEEETTTTEEEEEEECTTT
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-------CC------CEEEEecCCCCcEEEEEEcccc
Confidence 999999877655543 444444 699999 98 78999888 9999999987643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-28 Score=250.87 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=183.4
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEE
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIA 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~ 306 (548)
|...|++++|+|++..++++++.||.|++||+.... ...+..+. .|...|.+++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~------------------------~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS------------------------KNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS------------------------SSCEEEEEEEECSSCEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC------------------------CceeeeeecccCCCCceEEE
Confidence 455799999999999335899999999999998210 12344443 5668899999
Q ss_pred ECCCCCEEEEEECCCeEEEEeCCCCeEEE----eeeecCCceEEEEEccC---CCEEEEEeCCCeEEEEECCCceeEEe-
Q 008939 307 FSTDGTYLATVGRDGYLRVFDYSKEQLIC----GGKSYYGALLCCAWSMD---GKYILTGGEDDLVQVWSMEDRKVVAW- 378 (548)
Q Consensus 307 ~sp~g~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~v~~l~~spd---g~~l~sgs~dg~I~vwd~~~~~~~~~- 378 (548)
|+|++++|++++.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++++..
T Consensus 157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 99999999999999999999998876544 67889999999999999 99999999999999999999988777
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
+.+|...|.+++|+ ++ .+|++++.|+.|++||+++++++..+........+.+.....
T Consensus 237 ~~~h~~~v~~~~~s--------d~------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 294 (450)
T 2vdu_B 237 LFGHKHFVSSICCG--------KD------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA-------- 294 (450)
T ss_dssp CCCCSSCEEEEEEC--------ST------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--------
T ss_pred ecCCCCceEEEEEC--------CC------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc--------
Confidence 66899999999996 44 589999999999999999999888776421111111100000
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEE-CCCeEEEEeC--CCC---Cc--cccCCCCcEE-
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVC-REGHIKIWMR--PGV---AE--SQSSSSETVL- 527 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s-~Dg~I~iW~~--~~~---~~--~~~~~~~~v~- 527 (548)
+..........+...|.+|+|+|+ .|++++ .|+.|++|++ ... .. ....+ ..+.
T Consensus 295 --------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 295 --------------PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS 359 (450)
T ss_dssp ------------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred --------------cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence 000000001123567999999997 488888 8999999999 433 11 11233 5555
Q ss_pred -EecCCCCceEee
Q 008939 528 -STSSKDKPLLSS 539 (548)
Q Consensus 528 -~~s~d~~~l~s~ 539 (548)
+++|++ .+++.
T Consensus 360 ~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 360 LSAHNDE-FQVTL 371 (450)
T ss_dssp EEEETTE-EEEEE
T ss_pred EEecCCc-EEEEE
Confidence 677854 44443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-28 Score=236.34 Aligned_cols=251 Identities=17% Similarity=0.291 Sum_probs=206.8
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+...+|...|.+++|+|+++++++++.| .|+|||+++++ .+..+..|...+.++.+.+ ..|++++.++.+.
T Consensus 60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--~~~~~~~h~~~~~~~~~~~-----~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWNS-----YILSSGSRSGHIH 132 (318)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEET-----TEEEEEETTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--eEEEecCccceEEEeecCC-----CEEEEEecCCceE
Confidence 45567889999999999999999999888 99999999854 8888888888887776654 4899999999999
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
+|+.... ........ .|...+.++.|.+++. +|++++.|+.|++||+++....
T Consensus 133 ~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~--------------- 185 (318)
T 4ggc_A 133 HHDVRVA-----EHHVATLS------GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG--------------- 185 (318)
T ss_dssp EEETTSS-----SCEEEEEE------CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTB---------------
T ss_pred eeecCCC-----ceeEEEEc------CccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCccc---------------
Confidence 9997652 12221111 3788999999999999 9999999999999999863211
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCC-EE--EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGT-YL--ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l--~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 358 (548)
.........|.+.|.+++++|++. .+ ++++.++.|++||.+......... +...+..+.|+|+++.+++
T Consensus 186 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 186 -------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp -------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred -------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 122344455678999999999654 33 456678999999999887766544 6678999999999998877
Q ss_pred Ee--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 359 GG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 359 gs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++ .|+.|++||+++++++..+.+|.+.|++|+|+| || .+|+|++.|+.|+|||+...
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-------dg------~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-------DG------ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-------TS------SCEEEEETTTEEEEECCSCC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-------CC------CEEEEEecCCeEEEEECCCC
Confidence 65 799999999999999999999999999999999 99 78999999999999999754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=254.60 Aligned_cols=308 Identities=10% Similarity=0.072 Sum_probs=194.5
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce--eeeeee-----------ccC----CcccCcceEEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL--VGAHHY-----------NKD----GSVNNSRCTSV 236 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~--~~~~~~-----------~~~----~~~~~~~v~~l 236 (548)
..+.++.|.....+...|+..+.++.|.+|+............ .....+ ... ...+...+...
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 4667777754433344566666788999998765211111000 000000 000 00122222223
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-------
Q 008939 237 TWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST------- 309 (548)
Q Consensus 237 ~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp------- 309 (548)
.+.+++. +|++++.|++|+|||++..... ...++..+.+|.+.|++++|+|
T Consensus 96 ~~~~~~~-~las~~~d~~v~lw~~~~~~~~---------------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 96 SSPVYSL-FLACVCQDNTVRLIITKNETII---------------------TQHVLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp -CCEEEE-EEEEEETTSCEEEEEEETTEEE---------------------EEEEECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred ecCCCCC-EEEEEeCCCcEEEEECCCCccc---------------------eeeeecccCCCCCceEEEEEccccccccC
Confidence 3333444 8999999999999998762110 0112344678999999999997
Q ss_pred -CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-EEEEEeCCCeEEEEECCCceeEEe---------
Q 008939 310 -DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-YILTGGEDDLVQVWSMEDRKVVAW--------- 378 (548)
Q Consensus 310 -~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~sgs~dg~I~vwd~~~~~~~~~--------- 378 (548)
|+++||+++.|++|+|||++++..+..+..|...+.+++|+|++. +|++|+.|+.|++||+++++....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 789999999999999999998888888888999999999999885 799999999999999987654322
Q ss_pred ----------------ccCCCCCeEEEEEe-cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC-CC
Q 008939 379 ----------------GEGHNSWVSGVAFD-SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP-LG 440 (548)
Q Consensus 379 ----------------~~~h~~~V~~v~~~-p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~-~~ 440 (548)
..+|...|.++.|. | || ..|++++.|+.+++||+..++....+.... ..
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~-------dg------~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGS-------DG------SGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETT-------TT------CEEEEECTTSEEEEEEC----------------
T ss_pred ceEEecccccceeeeecccccccceeeeeecC-------CC------CEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 23678889999987 5 88 789999999999999999887665554310 01
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC----eEEEEECCCeEEEEeCCCCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE----SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd----~l~t~s~Dg~I~iW~~~~~~ 516 (548)
....+ .........+.. +....|+|. .+++++.||.|+|||+..+.
T Consensus 301 ~~~~~-----------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 301 GPKNL-----------------------------LPNVQGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp ---CC-----------------------------SCSEEEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred ccEEE-----------------------------ccccccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 11111 111222222333 333445552 36778899999999987765
Q ss_pred cc--ccCCCCcEE--EecCCCCceEeeecccccc
Q 008939 517 ES--QSSSSETVL--STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 517 ~~--~~~~~~~v~--~~s~d~~~l~s~~~~g~~~ 546 (548)
.. ...+...|. +|+|||++||++...|..+
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~l 384 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLL 384 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSEEEE
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 32 335666776 8899999999998877543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-28 Score=246.96 Aligned_cols=308 Identities=10% Similarity=0.044 Sum_probs=235.3
Q ss_pred EEEEccC--CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCc
Q 008939 154 FISDLNS--QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNS 231 (548)
Q Consensus 154 ~vwd~~~--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (548)
.||.++. +..+.+..+.. ...+.+++|+|+ +.+++++..++.|++||+.+. +.. .... ......|..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~---~~~~~~~~~~~~i~~~d~~~g-----~~~-~~~~-~~~~~~~~~ 170 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKT-GFQPKSVRFIDN---TRLAIPLLEDEGMDVLDINSG-----QTV-RLSP-PEKYKKKLG 170 (433)
T ss_dssp CEEECCBTTCSEEEEEEEEC-SSCBCCCEESSS---SEEEEEBTTSSSEEEEETTTC-----CEE-EECC-CHHHHTTCC
T ss_pred EEEEECCCCCcceEEEEEcC-CCCceEEEEeCC---CeEEEEeCCCCeEEEEECCCC-----eEe-eecC-cccccccCC
Confidence 4555443 32245555553 446779999995 778888888899999998752 211 1110 001123778
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC
Q 008939 232 RCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG 311 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g 311 (548)
.|.+++|+|++. ++++++.|+.|++||++. ...+..+..|...+.+++|+|++
T Consensus 171 ~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 171 FVETISIPEHNE-LWVSQMQANAVHVFDLKT--------------------------LAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp EEEEEEEGGGTE-EEEEEGGGTEEEEEETTT--------------------------CCEEEEEECSSSSEEEEEEETTT
T ss_pred ceeEEEEcCCCE-EEEEECCCCEEEEEECCC--------------------------ceEEEEEcCCCCCeeEEEEcCCC
Confidence 999999999988 999999999999999975 23455666778899999999999
Q ss_pred CEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe--------CCCeEEEEECCCceeEEeccCC
Q 008939 312 TYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG--------EDDLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 312 ~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs--------~dg~I~vwd~~~~~~~~~~~~h 382 (548)
+++++++ .|+.|++||+++++.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+++++.+..+. |
T Consensus 224 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~ 301 (433)
T 3bws_A 224 DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-P 301 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-E
T ss_pred CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-C
Confidence 9886555 7999999999999988877654 5699999999999999888 58899999999998877664 6
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcc---cc-----
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA---HW----- 454 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 454 (548)
...+.+++|+| ++. .++++++.|+.|++||+.+++++..+........+++++++... ..
T Consensus 302 ~~~~~~~~~~~-------~g~-----~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 369 (433)
T 3bws_A 302 PGNKRHIVSGN-------TEN-----KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHP 369 (433)
T ss_dssp EECEEEEEECS-------STT-----EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCT
T ss_pred CCCcceEEECC-------CCC-----EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcc
Confidence 67899999999 872 46677899999999999999998888766666778888876310 00
Q ss_pred -CCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCCC
Q 008939 455 -DNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRPG 514 (548)
Q Consensus 455 -d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~~ 514 (548)
...+..+..++.+.+||..+.+.+..+..+ ..+.+++|+|++ |++++ .|+.|++|++.+
T Consensus 370 ~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 112233444678999999998888888764 578999999984 77666 599999999863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=248.45 Aligned_cols=236 Identities=9% Similarity=0.063 Sum_probs=179.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+.+|++|+.||.|++||+.+ ++.+. .. ....|.++.|+|. +++++.|+.|++|+....-.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~-----~~~~~-~~--------~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~-- 107 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKD-----SKTIT-TI--------TTPNPRTGGEHPA----IISRGPCNRLLLLYPGNQIT-- 107 (343)
T ss_dssp EEEEEEEEETTEEEEEEESS-----SSCEE-EE--------EEECCCTTCCCCS----EEEECSTTEEEEEETTTEEE--
T ss_pred CCEEEEECCCCcEEEEECCC-----CcEEE-EE--------ecCCceeeeeCCc----eEEecCCCeEEEEEccCceE--
Confidence 67899999999999999986 22221 11 1356777888887 89999999999999864100
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECC--CCCEEEEEECCCeEEEEeCCCCeEEEeee-ecCCc
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFST--DGTYLATVGRDGYLRVFDYSKEQLICGGK-SYYGA 343 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp--~g~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~ 343 (548)
.+. ......+..+. .|.+.|.+++|+| ++++|++++.||.|++||+++++.+.... .+...
T Consensus 108 -~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 108 -ILD--------------SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp -EEE--------------TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred -Eee--------------cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 000 00112233332 5668899999999 99999999999999999999998876653 34558
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCceeE-EeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 344 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
+.+++|+|++++|++|+.|+.|++||+++++.+ ..+.. |...|++++|+| +| .+|++++ |+.|+
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-------~g------~~l~s~~-~~~v~ 238 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-------NG------YWMVVEC-DQTVV 238 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-------TS------SEEEEEE-SSBEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-------CC------CEEEEEe-CCeEE
Confidence 999999999999999999999999999999877 78887 999999999999 98 7899999 55999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe--eEEEEeCCe--
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL--SGLIFTQES-- 497 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V--~~l~fspd~-- 497 (548)
+||+++.+++..+.. +..|...+ .+++|+|++
T Consensus 239 iwd~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPT--------------------------------------------YTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEETTSSTTCBSSCC--------------------------------------------CBC-----CCEEEEECTTSSE
T ss_pred EEEcCCCCcceeecc--------------------------------------------cccccccccceEEEECCCCCE
Confidence 999998765433221 01122223 469999974
Q ss_pred EEEEEC-CCeEEEEeCCCCC
Q 008939 498 VLTVCR-EGHIKIWMRPGVA 516 (548)
Q Consensus 498 l~t~s~-Dg~I~iW~~~~~~ 516 (548)
|++++. |+.|++|++....
T Consensus 275 l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEEEETTTTEEEEEEECTTT
T ss_pred EEEecCCCCcEEEEEEcccc
Confidence 888888 9999999986543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=257.31 Aligned_cols=289 Identities=9% Similarity=0.030 Sum_probs=209.1
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
.+|...+..++|+|+| ..+.+.+|+.+. ..+..+. +...|.+++|+|+ |.+|++++.||.|++||..
T Consensus 49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~---~~~~~~~-~~~~V~~vawSPd---G~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE------FENKLDFELAQQ---NGLLNSQ-PVCYPRVCKPSPI---DDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp SSBGGGTEEEEEECCC------CCCTTTTSCCCS---SCSSTTS-CSCCEEEEEECSS---SSCEEEEETTSCEEEEETT
T ss_pred cCCCccEEEEEECCCC------CcceEEEEeCCC---ceEeecC-CCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCC
Confidence 4799999999999999 223444444332 2222222 3678999999999 8899999999999999954
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. +..... .+.......|.+++|+|+|+ +|++|+.||+|++||+..+......
T Consensus 116 ~--------~l~~l~--~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~----------------- 167 (588)
T 2j04_A 116 K--------MLTNLD--SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTPE----------------- 167 (588)
T ss_dssp E--------EEEECC--CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCCC-----------------
T ss_pred c--------eeeecc--CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCcccccc-----------------
Confidence 3 111111 11111234699999999999 9999999999999999862100000
Q ss_pred CCCCCeeEe----eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE---EEee-eecCCceEEEEEccCCCEEEE
Q 008939 287 SKSNPIARW----HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL---ICGG-KSYYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 287 ~~~~~~~~~----~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~---~~~~-~~~~~~v~~l~~spdg~~l~s 358 (548)
...+..+ .+|...|.+++|+||| |++++.|+.|++||+..++. ..++ .+|...|.+++|+ ++.||+
T Consensus 168 --~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS 241 (588)
T 2j04_A 168 --FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL 241 (588)
T ss_dssp --CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred --ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence 0013444 4566899999999999 88899999999999987763 3456 3788899999999 688999
Q ss_pred EeCCCeEEEEECCCceeEEeccCCCCCeEEEEE--ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++ ++.|++||+.+++......+|.+.|..++| +| |+ ..|++++.||+ ++|.+..
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-------d~------~~La~a~edG~-klw~~d~--------- 297 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-------ES------TILLMSNKTSY-KVLLEDE--------- 297 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-------SC------EEEEECSSCEE-EEEESSS---------
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-------CC------CEEEEEcCCCC-EEEeecc---------
Confidence 87 699999999988874444479999999999 99 98 79999999999 9999882
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC 502 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s 502 (548)
+.+++++.. ++..+..+++|+.... ++..+.+ ...|++++|+||+ +++++
T Consensus 298 ------~~~spd~~l--------~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 ------LHVTADNII--------APYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ------EEEECCCSS--------HHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ------EEECCCceE--------EEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 223444321 1112555666665322 2333433 5679999999996 66665
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=251.81 Aligned_cols=238 Identities=12% Similarity=0.090 Sum_probs=164.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec--------CCCcEEEEEeCCCcEEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP--------GGDGAFVVGHADGNLYVYE 259 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p--------~~~~~l~s~~~dg~v~vwd 259 (548)
+.+|++++.|+.|++||++.. . ... .........|...|++|+|+| +++ +|++++.|++|+|||
T Consensus 101 ~~~las~~~d~~v~lw~~~~~-----~-~~~-~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNE-----T-IIT-QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETT-----E-EEE-EEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCC-----c-cce-eeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEE
Confidence 567999999999999998862 1 111 111122345999999999998 666 999999999999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEe--
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICG-- 336 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~-- 336 (548)
+... .++..+..|...|.+++|+|++ .+|++++.|+.|++||+++++....
T Consensus 173 ~~~~--------------------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 173 LTDE--------------------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EETT--------------------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CCCC--------------------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 9762 3456667788999999999976 5899999999999999988754322
Q ss_pred -----------------------eeecCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 337 -----------------------GKSYYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 337 -----------------------~~~~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
..+|...+.++.|+ ||++.|++++.|+.+++||+..++....+..|...+..+.+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 13466788899987 799999999999999999999988877777777777766665
Q ss_pred cCCC-------------CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeee
Q 008939 393 SYWS-------------QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCP 459 (548)
Q Consensus 393 p~~~-------------~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 459 (548)
|... .|..++ .++++++.|+.|+|||+.+++++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~sgs~Dg~V~lwd~~~~~~~~--------------------------- 353 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMD------YFATAHSQHGLIQLINTYEKDSNS--------------------------- 353 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTT------EEEEEETTTTEEEEEETTCTTCCE---------------------------
T ss_pred cccccccccCcceeEEEccCCCC------EEEEEECCCCEEEEEECCCCcEEE---------------------------
Confidence 5200 011133 577888889999999988776443
Q ss_pred ecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCC
Q 008939 460 VGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRP 513 (548)
Q Consensus 460 ~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~ 513 (548)
.+..|..+|++|+|+||+ |++++.|| +.+|.+.
T Consensus 354 --------------------~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 354 --------------------IPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp --------------------EEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred --------------------EecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 233578899999999985 88887666 5555543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-27 Score=239.86 Aligned_cols=273 Identities=9% Similarity=0.062 Sum_probs=211.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+++|+|++. ++++++.|+.|++||+.+... ... .+...+..|.+.|.+++|++
T Consensus 122 ~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~-~~~--------------------~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 122 GFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQT-VRL--------------------SPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp SSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCE-EEE--------------------CCCHHHHTTCCEEEEEEEGG
T ss_pred CCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeE-eee--------------------cCcccccccCCceeEEEEcC
Confidence 34567999999555 888888899999999886221 100 00113345778999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCCceeEEeccCCCCCeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~ 388 (548)
+++++++++.|+.|++||+++++.+..+..|...+.+++|+|++++++ +++.|+.|++||+++++.+..+..+ ..+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence 999999999999999999999999988888999999999999999885 4557999999999999998888754 45999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEe--------CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVG--------QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~--------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
++|+| +| .+|++++ .|+.|++||+++++.+..+........+++++++. ..+..
T Consensus 259 ~~~~~-------~g------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-----~l~~~ 320 (433)
T 3bws_A 259 LLLSK-------DG------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN-----KIYVS 320 (433)
T ss_dssp EEECT-------TS------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT-----EEEEE
T ss_pred EEEcC-------CC------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC-----EEEEE
Confidence 99999 88 5777777 58899999999998887775544555667766652 23355
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC---------------CCeEEEEeCCCCCccc-cCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR---------------EGHIKIWMRPGVAESQ-SSS 522 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~---------------Dg~I~iW~~~~~~~~~-~~~ 522 (548)
+..+..+.+||+...+.+..+. +...+.+++|+|++ |++++. ||.|++||+.+.+... ...
T Consensus 321 ~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 321 DMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred ecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 5678889999999888777765 67889999999984 777665 5799999998765322 222
Q ss_pred CCcE--EEecCCCCceEeeec-ccc
Q 008939 523 SETV--LSTSSKDKPLLSSKV-VTS 544 (548)
Q Consensus 523 ~~~v--~~~s~d~~~l~s~~~-~g~ 544 (548)
...+ ++++||+++|+++.. .+.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CCCCceEEEcCCCCEEEEEECCCCe
Confidence 3333 388999999988764 443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-26 Score=230.68 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=210.9
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
.++++++.++.|++||+.+. ++..... +...+.+++|+|++..++++++.|+.|++||+.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~----- 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN------KVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----- 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT------EEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-----
T ss_pred EEEEEcCCCCEEEEEECCCC------eEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-----
Confidence 46788889999999998762 2222222 34458999999999845577889999999999752
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
+.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+++.+..+..+ ..+.++
T Consensus 65 ---------------------~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~ 121 (391)
T 1l0q_A 65 ---------------------NVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGL 121 (391)
T ss_dssp ---------------------EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEE
T ss_pred ---------------------eEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceE
Confidence 223344444 4899999999999886555 6799999999999988877754 568999
Q ss_pred EEccCCCEE-EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 348 AWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 348 ~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+|+|++++| ++++.|+.|++||+++++.+..+..| ..+..++|+| +|. .++++++.|+.|++||++
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~-------dg~-----~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTP-------DGT-----KVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECT-------TSS-----EEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECC-------CCC-----EEEEEeCCCCEEEEEECC
Confidence 999999977 68888999999999999998888755 5579999999 882 344788889999999999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecc---cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EE
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT---LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LT 500 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~---~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t 500 (548)
+++++..+........+.+++++ ..+..+. .+..+.+||+...+++..+..|.. +.+++|+|++ | ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~g------~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s 261 (391)
T 1l0q_A 189 TNSVIDTVKVEAAPSGIAVNPEG------TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVA 261 (391)
T ss_dssp TTEEEEEEECSSEEEEEEECTTS------SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEE
T ss_pred CCeEEEEEecCCCccceEECCCC------CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEE
Confidence 99998888765556667777765 3333333 577899999999888888887754 7899999974 5 67
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
++.|+.|++||+...+
T Consensus 262 ~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 262 LSFXNTVSVIDTATNT 277 (391)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred cCCCCEEEEEECCCCc
Confidence 7899999999998765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=216.06 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=136.4
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec---CCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP---GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p---~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.|+.|++|++... ++.+.... .|...++.++|+| +++ +|++++.|++|+|||+.++
T Consensus 155 ~d~~V~~~~~s~d----G~~~~s~~-------~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TG--------- 213 (356)
T 2w18_A 155 SDQQVEVMTFAED----GGGKENQF-------LMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTG--------- 213 (356)
T ss_dssp TTCEEEEEEECTT----SCEEEEEE-------ECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTC---------
T ss_pred CCCcEEEEEECCC----Cceeeeec-------cCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCC---------
Confidence 4888888888541 22222111 3788899999999 566 9999999999999999872
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecC---CCeEEEEECCCCCEE------------EEEECCCeEEEEeCCCCeEEEee
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQ---GSINSIAFSTDGTYL------------ATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l------------~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
+.++.+..|. ..+.+++|+|+|+++ ++|+.|++|++||..+++.+..+
T Consensus 214 -----------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~ 276 (356)
T 2w18_A 214 -----------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM 276 (356)
T ss_dssp -----------------CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred -----------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence 3455555432 467788999999876 56788999999999999987655
Q ss_pred -----eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeE-EEEEecCCCCCCCCCCccceeEEE
Q 008939 338 -----KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS-GVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 338 -----~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.+|...+.+..++ +.++++++.|++|+|||+.+++++.++.+|...+. .++|+| || .+|
T Consensus 277 ~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-------DG------~~L 341 (356)
T 2w18_A 277 LYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-------TD------SHL 341 (356)
T ss_dssp EECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-------SS------SEE
T ss_pred EeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-------CC------CEE
Confidence 3565555554444 78999999999999999999999999999987655 689999 99 799
Q ss_pred EEEeCCCeEEEEEC
Q 008939 412 GSVGQDTRLLLWDL 425 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~ 425 (548)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=222.54 Aligned_cols=316 Identities=13% Similarity=0.082 Sum_probs=233.7
Q ss_pred EeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe--eecccccc
Q 008939 137 NFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL--RQQLQDVG 213 (548)
Q Consensus 137 ~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl--~~~~~~~~ 213 (548)
.|+|++.+++++..+ .|.+||..+++ .+..+.... .+.+++|+|+ +++|++++.++.|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~~g~-~~~~v~~spd---g~~l~v~~~d~~V~v~D~~~~t------ 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTGY-AVHISRMSAS---GRYLLVIGRDARIDMIDLWAKE------ 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEECST-TEEEEEECTT---SCEEEEEETTSEEEEEETTSSS------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--EEEEEecCc-ccceEEECCC---CCEEEEECCCCeEEEEECcCCC------
Confidence 488999888888777 99999999854 777777443 3899999999 889999999999999999 43
Q ss_pred cceeeeeeeccCCcccCcceEEEEEec----CCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 214 KKLVGAHHYNKDGSVNNSRCTSVTWVP----GGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~v~~l~~~p----~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.++..... +...+..++|+| +++ +|++++ .++.|.+||..+.
T Consensus 212 ~~~~~~i~-------~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~------------------------- 258 (543)
T 1nir_A 212 PTKVAEIK-------IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETL------------------------- 258 (543)
T ss_dssp CEEEEEEE-------CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTC-------------------------
T ss_pred CcEEEEEe-------cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEecccc-------------------------
Confidence 12222222 345679999999 999 677766 5899999998752
Q ss_pred CCCeeEeee----------c-CCCeEEEEECCCCC-EEEEEECCCeEEEEeCCCCeEEE--eeeecCCceEEEEEccCCC
Q 008939 289 SNPIARWHI----------C-QGSINSIAFSTDGT-YLATVGRDGYLRVFDYSKEQLIC--GGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 289 ~~~~~~~~~----------h-~~~v~~~~~sp~g~-~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~v~~l~~spdg~ 354 (548)
+++..+.. | ...+.++.++|++. ++++...++.|.+||+.+.+.+. .+ .+...+..++|+|+|+
T Consensus 259 -~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 259 -EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR 336 (543)
T ss_dssp -CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred -ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence 12222221 2 23788999999765 45666788999999998765433 33 3566788999999999
Q ss_pred EEEEEe-CCCeEEEEECCCceeEEeccC----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC-
Q 008939 355 YILTGG-EDDLVQVWSMEDRKVVAWGEG----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM- 427 (548)
Q Consensus 355 ~l~sgs-~dg~I~vwd~~~~~~~~~~~~----h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~- 427 (548)
+|++++ .++.|.+||+++++++..+.. |......+ ++| ++. ..++++. .|++|.+||+.+
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p-------~~g-----~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP-------KYG-----PVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET-------TTE-----EEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC-------CCc-----cEEEeccCCCceEEEEEeCCC
Confidence 876654 589999999999998887763 65544443 467 631 5677775 589999999998
Q ss_pred ------CeEEeeeecCC-CCCCceecCCCCccccCCeeeecc-------cCCCCceeecCCCCce-EEe--------ecC
Q 008939 428 ------DEIVVPLRRGP-LGGSPTFSTGSQSAHWDNVCPVGT-------LQPAPSMRDVPKLSPL-VAH--------RVH 484 (548)
Q Consensus 428 ------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~g~-------~~~~~~~~d~~~~~~~-~~~--------~~h 484 (548)
.++++.+..+. ....+.+++++. .+.+.. .+..+.+||+.+.+.. ..+ ..|
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSS------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCC------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCC------cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 88999998653 346677888873 222222 2568899999988876 443 356
Q ss_pred CCCeeEEEEeCCe--EEEE-----ECCCeEEEEeCCCCCcc
Q 008939 485 TEPLSGLIFTQES--VLTV-----CREGHIKIWMRPGVAES 518 (548)
Q Consensus 485 ~~~V~~l~fspd~--l~t~-----s~Dg~I~iW~~~~~~~~ 518 (548)
...+..++|+|++ |+.+ +.|+.|.|||..+.++.
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 7889999999985 4433 24899999999887643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=215.67 Aligned_cols=297 Identities=13% Similarity=0.100 Sum_probs=212.7
Q ss_pred CCceeEEeCCCCCEEE-Eec-----CC----eEEEEEc--cCCCCCCe--EEEecCCCCceEEEecCC--------C---
Q 008939 131 TSMTNTNFDGKGTYII-FNV-----GD----AIFISDL--NSQDKDPI--KSIHFSNSNPVCHAFDQD--------A--- 185 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~-~~~-----~d----~v~vwd~--~~~~~~~i--~~~~~~~~~~~~~~~~p~--------~--- 185 (548)
..+....|.+.|..++ +++ +. .++|||+ .+++ .+ ..+..+...+..+++.+. +
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT--VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC--EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC--EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556677877776444 432 22 7999999 7754 55 345556666766666641 0
Q ss_pred CCCceEEEEEcC------CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEE
Q 008939 186 KDGHDLLIGLNS------GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLY 256 (548)
Q Consensus 186 ~~~~~l~~g~~d------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~ 256 (548)
..+..++.++.+ +.|++||++.. ...... .|...+.+++|+|+++ .|++++.|+ .|+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~------~~~~l~-------~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY------NQFVVH-------RSPQPLMSPAWSPDGS-KLAYVTFESGRSALV 206 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC------SCEEEE-------EESSCEEEEEECTTSS-EEEEEECTTSSCEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC------CCEEEe-------CCCCcceeeEEcCCCC-EEEEEEecCCCcEEE
Confidence 013456666554 78999998641 111111 2678899999999999 888888775 999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEE-EEECCCe--EEEEeCCCCeE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLA-TVGRDGY--LRVFDYSKEQL 333 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~~dg~--v~vwd~~~~~~ 333 (548)
+||+.+. ....+..|.+.+.+++|+|||++|+ +++.|+. |++||+.+++.
T Consensus 207 ~~d~~tg---------------------------~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 207 IQTLANG---------------------------AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEETTTC---------------------------CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred EEECCCC---------------------------cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE
Confidence 9999862 1233455667899999999999888 5555554 99999998876
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCC-C--eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGED-D--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
..+..|...+.+++|+|||++|++++.+ + .|.+||+.+++. ..+..|...+..++|+| || .+
T Consensus 260 -~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp-------dG------~~ 324 (415)
T 2hqs_A 260 -RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS-------DG------KF 324 (415)
T ss_dssp -EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT-------TS------SE
T ss_pred -EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC-------CC------CE
Confidence 4566788889999999999999888764 4 688889988764 34556778899999999 99 67
Q ss_pred EEEEeCC---CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 411 FGSVGQD---TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 411 l~s~~~D---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
|+.++.+ ..|.+||+.++++.. + ..|. .
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~~~~-l-----------------------------------------------~~~~-~ 355 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGGVQV-L-----------------------------------------------SSTF-L 355 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEE-C-----------------------------------------------CCSS-S
T ss_pred EEEEECcCCceEEEEEECCCCCEEE-e-----------------------------------------------cCCC-C
Confidence 7777654 589999999876532 1 1232 6
Q ss_pred eeEEEEeCCe--EEEEECCC---eEEEEeCCCCCccc-cCCCCcEE--EecCCCC
Q 008939 488 LSGLIFTQES--VLTVCREG---HIKIWMRPGVAESQ-SSSSETVL--STSSKDK 534 (548)
Q Consensus 488 V~~l~fspd~--l~t~s~Dg---~I~iW~~~~~~~~~-~~~~~~v~--~~s~d~~ 534 (548)
+.+++|+||+ |++++.|+ .|++||+.++.... ..+...+. +++|...
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 8899999984 77887776 89999998766433 35556665 7777643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=231.86 Aligned_cols=357 Identities=13% Similarity=0.076 Sum_probs=253.7
Q ss_pred CCCCCCceeEEeCCCCCEEEEecC------C-eEEEEEccCCCCCCeEEEecCCCCc-------eEEEecCCCCCCceEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVG------D-AIFISDLNSQDKDPIKSIHFSNSNP-------VCHAFDQDAKDGHDLL 192 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~------d-~v~vwd~~~~~~~~i~~~~~~~~~~-------~~~~~~p~~~~~~~l~ 192 (548)
..|...+..++|+|||++|++.+. + .|++||+.++ .+..+..+...+ ..++|+|+ +..++
T Consensus 49 t~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g---~~~~lt~~~~~~~~~~~~~~~~~~SpD---g~ll~ 122 (1045)
T 1k32_A 49 VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG---EIKRITYFSGKSTGRRMFTDVAGFDPD---GNLII 122 (1045)
T ss_dssp ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT---EEEECCCCCEEEETTEECSEEEEECTT---CCEEE
T ss_pred eeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC---CeEEcccCCCcccccccccccccCCCC---CEEEE
Confidence 357888999999999999998642 2 8999999864 356677777666 89999999 66666
Q ss_pred EEEcC------CcEEEEEeeecccccc-cceeeeeee------------------------------cc------CCccc
Q 008939 193 IGLNS------GDVYSVSLRQQLQDVG-KKLVGAHHY------------------------------NK------DGSVN 229 (548)
Q Consensus 193 ~g~~d------g~I~iwdl~~~~~~~~-~~~~~~~~~------------------------------~~------~~~~~ 229 (548)
++..+ ..|++|++........ ........+ .. ....|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 66644 3588888754211100 000000000 00 00236
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.++.|+++ . +++++..|+.+.||+++..+.. ...+..| ..+..++|+|
T Consensus 203 ~~~v~~~~~s~d-~-l~~~~~~dg~~~l~~~~~~g~~-------------------------~~~l~~~-~~~~~~~~Sp 254 (1045)
T 1k32_A 203 STHVSSPVIVGH-R-IYFITDIDGFGQIYSTDLDGKD-------------------------LRKHTSF-TDYYPRHLNT 254 (1045)
T ss_dssp SSCCEEEEEETT-E-EEEEECTTSSCEEEEEETTSCS-------------------------CEECCCC-CSSCEEEEEE
T ss_pred CCcccceEEeCC-E-EEEEEeccCceEEEEEeCCCCc-------------------------ceEecCC-CCcceeeEcC
Confidence 778899999988 4 7888888999999987653221 1122222 2456779999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeee-----------cCCceEEEEEc-cCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKS-----------YYGALLCCAWS-MDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~v~~l~~s-pdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
||++|+++ .++.|.+||+...++. .+.. |...+.+++|+ |||++|++++ ++.|.+|++..++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 99999887 4899999999554443 4443 33468999999 9999999887 7899999998876554
Q ss_pred eccCCCC-CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE-EEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 378 WGEGHNS-WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL-LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 378 ~~~~h~~-~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~-lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
+..|.. .+..++|+ || ..|+.++.+..|. +||+..++.............+.+++++
T Consensus 332 -~~~~~~~~~~~~~~s--------dg------~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG------ 390 (1045)
T 1k32_A 332 -VPEPLRIRYVRRGGD--------TK------VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG------ 390 (1045)
T ss_dssp -CSCCSCEEEEEECSS--------SE------EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS------
T ss_pred -ccCCCcceEEeeeEc--------CC------CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC------
Confidence 566777 78888885 55 6788888888999 9999887765433222345567788886
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCC----------eEEEEeCCCCCcc-ccCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREG----------HIKIWMRPGVAES-QSSS 522 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg----------~I~iW~~~~~~~~-~~~~ 522 (548)
..+..+..+..+++||+.+.+......+|...+..++|+||+ |++++.++ .|++||+.++... ...+
T Consensus 391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~ 470 (1045)
T 1k32_A 391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 470 (1045)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC
Confidence 344455566788999999888887777899999999999984 77776654 9999999876533 2234
Q ss_pred CCcEE--EecCCCCceEeeec
Q 008939 523 SETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 523 ~~~v~--~~s~d~~~l~s~~~ 541 (548)
...+. +|+|||++|+.+..
T Consensus 471 ~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 471 NSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp SSBEEEEEECTTSCEEEEEES
T ss_pred CcccCCceEcCCCCEEEEEec
Confidence 44443 79999999887764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=221.98 Aligned_cols=316 Identities=14% Similarity=0.144 Sum_probs=219.4
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEc-CC-----cEEEEEeeecccccccceeeeeeecc-------CCc--------cc
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLN-SG-----DVYSVSLRQQLQDVGKKLVGAHHYNK-------DGS--------VN 229 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~-dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~-------~~~--------~~ 229 (548)
+....+.+++|+|+ |.+|++++. ++ .|++||+.+.. ...+.......+ +.. ..
T Consensus 34 ~~~~~~~~~~~Spd---G~~la~~~~~d~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 34 LSGPTLMKPKVAPD---GSRVTFLRGKDSDRNQLDLWSYDIGSGQ---TRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp TTCCCCEEEEECTT---SSEEEEEECCSSCTTEEEEEEEETTTCC---EEEEECGGGTC--------------------C
T ss_pred cCCCCCCCceEecC---CCEEEEEeccCCCCcccEEEEEECCCCc---eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 34667899999999 888999998 88 89999987621 011110000000 000 00
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+.+++|+||++ .|++++. +.|++||+...... .+..+..|...+.+++|+|
T Consensus 108 ~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~------------------------~~~~l~~~~~~~~~~~~SP 161 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKA------------------------AVRQLTHGEGFATDAKLSP 161 (741)
T ss_dssp CEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTT------------------------SCCBCCCSSSCEEEEEECT
T ss_pred ccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcc------------------------eEEEcccCCcccccccCCC
Confidence 03488999999999 7777776 99999999863100 1112233447799999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc----------------eEEEEEccCCCEEEEEeCCC----------
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA----------------LLCCAWSMDGKYILTGGEDD---------- 363 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------------v~~l~~spdg~~l~sgs~dg---------- 363 (548)
||++|++++ ++.|++||+.+++.......+... +..++|+|||++|++++.|+
T Consensus 162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence 999999987 569999999988776544433332 47899999999999987765
Q ss_pred -----------------------eEEEEECCC-ceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-
Q 008939 364 -----------------------LVQVWSMED-RKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ- 416 (548)
Q Consensus 364 -----------------------~I~vwd~~~-~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~- 416 (548)
.|.+||+.+ ++...... .|...+..++| | || .+|+..+.
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-------Dg------~~l~~~~~~ 306 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-------DP------QHLSFQRQS 306 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-------ET------TEEEEEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-------CC------CEEEEEEec
Confidence 889999998 77655443 47889999999 9 99 56665543
Q ss_pred ----CCeEEEEECCCCeEEeeeecCC-----CCCCceecCCCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCC
Q 008939 417 ----DTRLLLWDLEMDEIVVPLRRGP-----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTE 486 (548)
Q Consensus 417 ----Dg~i~lwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~ 486 (548)
+..|++||+.++++...+.... ....+.|++++. .+..+..++...+|.+. ... ...+..|..
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~------~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~ 379 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS------ILWSSERTGFQHLYRIDSKGK-AAALTHGNW 379 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC------EEEEECTTSSCEEEEECSSSC-EEESCCSSS
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe------EEEEecCCCccEEEEEcCCCC-eeeeeecce
Confidence 6789999999998877665432 335788888873 33445556667777665 334 777778888
Q ss_pred CeeEE-EEeCCe--E-EEEECCC--eEEEEeCCC--CCccccCCCCcE--EEecCCCCceEeee
Q 008939 487 PLSGL-IFTQES--V-LTVCREG--HIKIWMRPG--VAESQSSSSETV--LSTSSKDKPLLSSK 540 (548)
Q Consensus 487 ~V~~l-~fspd~--l-~t~s~Dg--~I~iW~~~~--~~~~~~~~~~~v--~~~s~d~~~l~s~~ 540 (548)
.|..+ .|+|++ | ++++.|+ .++||++.. ...........+ .++|||+++|+...
T Consensus 380 ~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 380 SVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp CEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEe
Confidence 89887 599984 5 4556666 899999753 222223323333 38999999987663
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=206.67 Aligned_cols=243 Identities=13% Similarity=0.037 Sum_probs=181.3
Q ss_pred cccCCCCCCceeEEeCC--------------CCCEEEEecC-------CeEEEEEccCCCCCCeEEEecCCCCceEEEec
Q 008939 124 LGASSSSTSMTNTNFDG--------------KGTYIIFNVG-------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFD 182 (548)
Q Consensus 124 ~~~~~h~~~v~~~~~~~--------------~g~~l~~~~~-------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~ 182 (548)
..+.+|...+..+++.+ .+..+++.+. ..|++||++. ..+..+..+...+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCcceeeEEc
Confidence 33455666666555553 2556655443 4899999974 2456676688899999999
Q ss_pred CCCCCCceEEEEEcCC---cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEE-EEeCCCc--EE
Q 008939 183 QDAKDGHDLLIGLNSG---DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV-VGHADGN--LY 256 (548)
Q Consensus 183 p~~~~~~~l~~g~~dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~-s~~~dg~--v~ 256 (548)
|+ +..|++++.++ .|++||+++. +. .... .+...+.+++|+|+++ .|+ +++.|+. |+
T Consensus 188 pd---g~~la~~s~~~~~~~i~~~d~~tg-----~~-~~l~-------~~~~~~~~~~~spdg~-~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 188 PD---GSKLAYVTFESGRSALVIQTLANG-----AV-RQVA-------SFPRHNGAPAFSPDGS-KLAFALSKTGSLNLY 250 (415)
T ss_dssp TT---SSEEEEEECTTSSCEEEEEETTTC-----CE-EEEE-------CCSSCEEEEEECTTSS-EEEEEECTTSSCEEE
T ss_pred CC---CCEEEEEEecCCCcEEEEEECCCC-----cE-EEee-------cCCCcccCEEEcCCCC-EEEEEEecCCCceEE
Confidence 99 88899999885 8999999762 21 1111 1567899999999999 555 7776665 99
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CC--eEEEEeCCCCeE
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DG--YLRVFDYSKEQL 333 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg--~v~vwd~~~~~~ 333 (548)
+||+.+. ....+..|...+.+++|+|||++|++++. ++ .|.+||+.+++.
T Consensus 251 ~~d~~~~---------------------------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 251 VMDLASG---------------------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEETTTC---------------------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred EEECCCC---------------------------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 9998752 12344456678999999999999998886 44 688889988764
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCC---CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGED---DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~d---g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
. .+..+...+.+++|+|||++|++++.+ ..|.+||+++++.. .+..|. .+.+++|+| || .+
T Consensus 304 ~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-------dg------~~ 367 (415)
T 2hqs_A 304 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-------NG------TM 367 (415)
T ss_dssp E-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-------TS------SE
T ss_pred E-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-------CC------CE
Confidence 3 344566789999999999999988764 58999999988774 455554 899999999 99 67
Q ss_pred EEEEeCCC---eEEEEECCCCe
Q 008939 411 FGSVGQDT---RLLLWDLEMDE 429 (548)
Q Consensus 411 l~s~~~Dg---~i~lwd~~~~~ 429 (548)
|++++.|+ .|.+||+..+.
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC
T ss_pred EEEEEcCCCccEEEEEECCCCc
Confidence 88887776 79999987443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=210.08 Aligned_cols=300 Identities=11% Similarity=0.037 Sum_probs=220.7
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
+.+|+|+ +..++++..++.|.+||..+ .++..... ....+..++|+|+++ +|++++.|+.|++
T Consensus 142 ~~~~~p~---~~~~vs~~~d~~V~v~D~~t------~~~~~~i~-------~g~~~~~v~~spdg~-~l~v~~~d~~V~v 204 (543)
T 1nir_A 142 LNDLDLP---NLFSVTLRDAGQIALVDGDS------KKIVKVID-------TGYAVHISRMSASGR-YLLVIGRDARIDM 204 (543)
T ss_dssp CSCCCGG---GEEEEEEGGGTEEEEEETTT------CCEEEEEE-------CSTTEEEEEECTTSC-EEEEEETTSEEEE
T ss_pred ccccCCC---CEEEEEEcCCCeEEEEECCC------ceEEEEEe-------cCcccceEEECCCCC-EEEEECCCCeEEE
Confidence 3357776 77888889999999999876 22222222 112388999999999 8999999999999
Q ss_pred EEc--CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC----CCCEEEEEE-CCCeEEEEeCCC
Q 008939 258 YEK--SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST----DGTYLATVG-RDGYLRVFDYSK 330 (548)
Q Consensus 258 wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~~-~dg~v~vwd~~~ 330 (548)
||+ .+ ...+..+. +...+..++|+| ||++|++++ .++.|.+||..+
T Consensus 205 ~D~~~~t--------------------------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 205 IDLWAKE--------------------------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EETTSSS--------------------------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred EECcCCC--------------------------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 999 43 11233333 235678999999 999999887 489999999999
Q ss_pred CeEEEeeee----------c-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEE--eccCCCCCeEEEEEecCCC
Q 008939 331 EQLICGGKS----------Y-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVA--WGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 331 ~~~~~~~~~----------~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~ 396 (548)
++++..+.. | ...+..+.++|++.. +++...++.|.+||+.+.+.+. .+. +...+..+.|+|
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp--- 333 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS--- 333 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT---
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC---
Confidence 998887754 2 237889999998764 5667778999999998865433 443 677888999999
Q ss_pred CCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEEeeeecC---CCCCCcee-cCCCCccccCCeeeecc-cCCCCcee
Q 008939 397 QPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIVVPLRRG---PLGGSPTF-STGSQSAHWDNVCPVGT-LQPAPSMR 470 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~d~~~~~g~-~~~~~~~~ 470 (548)
|| ++| +++..++.|.+||+.+++++..+... ++.....+ .+++ ...+.++. .+..+.+|
T Consensus 334 ----dg------~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~-----g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 334 ----SH------RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY-----GPVWSTSHLGDGSISLI 398 (543)
T ss_dssp ----TS------CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTT-----EEEEEEEBSSSSEEEEE
T ss_pred ----CC------CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCC-----ccEEEeccCCCceEEEE
Confidence 98 444 55556899999999999998887742 22222222 2331 11223443 35788999
Q ss_pred ecCC-------CCceEEeecCCCCeeEEEEeCCe--EEEEE-------CCCeEEEEeCCCCCcc-c----------cCCC
Q 008939 471 DVPK-------LSPLVAHRVHTEPLSGLIFTQES--VLTVC-------REGHIKIWMRPGVAES-Q----------SSSS 523 (548)
Q Consensus 471 d~~~-------~~~~~~~~~h~~~V~~l~fspd~--l~t~s-------~Dg~I~iW~~~~~~~~-~----------~~~~ 523 (548)
|+.. ++.+..+.+|...+..|+|+|++ |++++ .+++|++||+.+.+.. . ..+.
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 9987 89999999999999999999985 77766 2789999999876643 1 1223
Q ss_pred CcEE--EecCCCCceEeee
Q 008939 524 ETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 524 ~~v~--~~s~d~~~l~s~~ 540 (548)
..+. .|+|||+.|..+.
T Consensus 479 ~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CEEEEEEECSSSSEEEEEE
T ss_pred CceEeccCCCCCCEEEEEe
Confidence 3444 8999999988763
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-22 Score=221.89 Aligned_cols=337 Identities=12% Similarity=0.088 Sum_probs=221.4
Q ss_pred CCCceeEEeCCCCCEEEEecC-C------eEEEEEccCCCCCCeEEEecCCC------------------------CceE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG-D------AIFISDLNSQDKDPIKSIHFSNS------------------------NPVC 178 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~-d------~v~vwd~~~~~~~~i~~~~~~~~------------------------~~~~ 178 (548)
...+..++|+|||++|++.+. + .|++||+.++. ....+..+.. .+.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456789999999999999765 3 79999999855 4444443322 3789
Q ss_pred EEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEE
Q 008939 179 HAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVY 258 (548)
Q Consensus 179 ~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vw 258 (548)
++|+|+ +.+|++++. +.|++||+...... .+.... .+...+.+++|+|+|+ .|+.++ ++.|++|
T Consensus 114 ~~~SpD---g~~l~~~~~-~~i~~~d~~~~~~~---~~~~l~-------~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 114 YQWSPD---AQRLLFPLG-GELYLYDLKQEGKA---AVRQLT-------HGEGFATDAKLSPKGG-FVSFIR-GRNLWVI 177 (741)
T ss_dssp CEECTT---SSEEEEEET-TEEEEEESSSCSTT---SCCBCC-------CSSSCEEEEEECTTSS-EEEEEE-TTEEEEE
T ss_pred eEECCC---CCEEEEEeC-CcEEEEECCCCCcc---eEEEcc-------cCCcccccccCCCCCC-EEEEEe-CCcEEEE
Confidence 999999 778888886 99999999762000 111111 2567799999999999 777776 4699999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----------------
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----------------- 321 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----------------- 321 (548)
|+.... ....... ... ....... ..........+..++|+|||++|++++.|+
T Consensus 178 d~~~g~-~~~~~~~-~~~-~~~~g~~-------~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~ 247 (741)
T 2ecf_A 178 DLASGR-QMQLTAD-GST-TIGNGIA-------EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD 247 (741)
T ss_dssp ETTTTE-EEECCCC-CCS-SEEESCC-------CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred ecCCCC-EEEeccC-Ccc-ceecccc-------ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence 987521 1100000 000 0000000 000000012357899999999999998776
Q ss_pred ----------------eEEEEeCCC-CeEEEeee--ecCCceEEEEEccCCCEEEEEeC-----CCeEEEEECCCceeEE
Q 008939 322 ----------------YLRVFDYSK-EQLICGGK--SYYGALLCCAWSMDGKYILTGGE-----DDLVQVWSMEDRKVVA 377 (548)
Q Consensus 322 ----------------~v~vwd~~~-~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~-----dg~I~vwd~~~~~~~~ 377 (548)
.|.+||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++...
T Consensus 248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 889999988 77654432 36678999999 99999987653 5689999999998777
Q ss_pred eccCCCC----CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC-CCeEEeeeecC-CCCCCc-eecCCCC
Q 008939 378 WGEGHNS----WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE-MDEIVVPLRRG-PLGGSP-TFSTGSQ 450 (548)
Q Consensus 378 ~~~~h~~----~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~-~~~~~~~~~~~-~~~~~~-~~~~~~~ 450 (548)
.+..+.. .+..++|+| || ++++++..|+.++||.+. .+. ...+..+ ..+..+ .|++++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~sp-------dg------~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 327 LAHETSPTWVPLHNSLRFLD-------DG------SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG 392 (741)
T ss_dssp EEEEECSSCCCCCSCCEECT-------TS------CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT
T ss_pred EEEcCCCCcCCcCCceEECC-------CC------eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC
Confidence 6665443 446899999 99 678888899988888765 334 4444332 222233 3677662
Q ss_pred ccccCCeeeecccCC--CCceeecCC-CCceEEeecCCCCeeEEEEeCCe--EEEE-ECC---CeEEEEeCCCC
Q 008939 451 SAHWDNVCPVGTLQP--APSMRDVPK-LSPLVAHRVHTEPLSGLIFTQES--VLTV-CRE---GHIKIWMRPGV 515 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~--~~~~~d~~~-~~~~~~~~~h~~~V~~l~fspd~--l~t~-s~D---g~I~iW~~~~~ 515 (548)
..+..+..+. .+++|++.. ...+..+.. ...+..+.|+||+ |+.. +.. ..+.+|+..+.
T Consensus 393 -----~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 393 -----LAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp -----EEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred -----EEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 1222333333 677888754 444556654 6678999999984 4433 333 56888887554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-22 Score=228.37 Aligned_cols=358 Identities=12% Similarity=0.117 Sum_probs=242.7
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
.+|...+..+.|+++ .+++++..+ .+.||.+.... .....+..+. .+.+.+|+|+ +..|+.+ .++.|++||+
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpD---G~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTD---GRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEES---SSCEEEE-ETTEEEEECT
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCC---CCEEEEE-eCCEEEEecC
Confidence 578889999999988 444444444 77888766422 2444554443 5677899998 7778777 5899999998
Q ss_pred eecccccccceeeeeeec-----cCCcccCcceEEEEEe-cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 206 RQQLQDVGKKLVGAHHYN-----KDGSVNNSRCTSVTWV-PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~-p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
.. +.+.. .... .....+...+.+++|+ |++. .|++++ ++.|++|++...
T Consensus 273 ~~------~~l~~-l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~---------------- 327 (1045)
T 1k32_A 273 DT------EKIEK-IEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGT---------------- 327 (1045)
T ss_dssp TT------CCEEE-CCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSS----------------
T ss_pred Cc------eEeee-eccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCC----------------
Confidence 32 22211 1000 0000134578999999 9998 666666 789999998642
Q ss_pred eeecCCCCCCCCeeEeeecCC-CeEEEEECCCCCEEEEEECCCeEE-EEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQG-SINSIAFSTDGTYLATVGRDGYLR-VFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~v~-vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
....+..|.. .+..++|+ ||+.|++++.+..+. +||+.+++.... ..|...+..++|+|||++|+
T Consensus 328 -----------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 328 -----------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp -----------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEE
T ss_pred -----------ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEE
Confidence 1122333445 78999999 999999999888898 999987765543 37778899999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC----------eEEEEECCC
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT----------RLLLWDLEM 427 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg----------~i~lwd~~~ 427 (548)
+++.++.|++||+++++....+.+|...|..++|+| || ++|++++.++ .|++||+.+
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-------DG------~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-------NS------RFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-------TS------CEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EECCCCeEEEEECCCCceEEeccCCCCCccceEECC-------CC------CeEEEEecCccccccCCCCCeEEEEECCC
Confidence 999999999999999988888778999999999999 99 6787777644 999999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccc---cCCeeeecc-------cCCCC--------------------------ceee
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAH---WDNVCPVGT-------LQPAP--------------------------SMRD 471 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~g~-------~~~~~--------------------------~~~d 471 (548)
++.............+.|++++.... .+.....+. ..... ..++
T Consensus 462 g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 541 (1045)
T 1k32_A 462 RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 541 (1045)
T ss_dssp TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccc
Confidence 87433222223344566777764110 000000000 00000 0122
Q ss_pred cCC-CCceEEeecCCCCeeEEEEeCCe--EEE-------------EECCCeEEEEeCCCCCccccCCCCcEEEecCCCCc
Q 008939 472 VPK-LSPLVAHRVHTEPLSGLIFTQES--VLT-------------VCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKP 535 (548)
Q Consensus 472 ~~~-~~~~~~~~~h~~~V~~l~fspd~--l~t-------------~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~ 535 (548)
+.. ...+..+..|...+..+.|+||+ +++ ...+..|.+||+.+++..........+++||||++
T Consensus 542 ~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~ 621 (1045)
T 1k32_A 542 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 621 (1045)
T ss_dssp CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCE
T ss_pred ccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCE
Confidence 222 12344555677889999999995 443 12356788888887765444322233489999999
Q ss_pred eEeeecc
Q 008939 536 LLSSKVV 542 (548)
Q Consensus 536 l~s~~~~ 542 (548)
|+++...
T Consensus 622 l~~~~~~ 628 (1045)
T 1k32_A 622 VMVRKDD 628 (1045)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9988654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-21 Score=187.73 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=188.1
Q ss_pred EEeCCCCCEEE-EecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeeccccc
Q 008939 136 TNFDGKGTYII-FNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~-~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~ 212 (548)
+.|.+++.+++ ++..+ .|++||+.+++ .+..+......+ +++|+|+ +..|+++.. ++.|++||+.+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~-~~~~s~d---g~~l~~~~~~~~~i~~~d~~~~---- 72 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE--ILNQITLGYDFV-DTAITSD---CSNVVVTSDFCQTLVQIETQLE---- 72 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC--EEEEEECCCCEE-EEEECSS---SCEEEEEESTTCEEEEEECSSS----
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc--eeeeEEccCCcc-eEEEcCC---CCEEEEEeCCCCeEEEEECCCC----
Confidence 34556666544 44444 99999999854 667777666666 9999999 766766666 889999998762
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+....... .+..++.+++|+|+++ +|+++..++ .|++||+....
T Consensus 73 -~~~~~~~~------~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~------------------------- 119 (331)
T 3u4y_A 73 -PPKVVAIQ------EGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK------------------------- 119 (331)
T ss_dssp -SCEEEEEE------ECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE-------------------------
T ss_pred -ceeEEecc------cCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC-------------------------
Confidence 22111111 1344445599999999 677655553 89999997521
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCe-EEEEeCCCCeEEE----eeeecCCceEEEEEccCCCEEEE-EeCC
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATV-GRDGY-LRVFDYSKEQLIC----GGKSYYGALLCCAWSMDGKYILT-GGED 362 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~-v~vwd~~~~~~~~----~~~~~~~~v~~l~~spdg~~l~s-gs~d 362 (548)
.+..+.. ...+.+++|+|+|++|+++ ..++. |.+|++.....+. ...........++|+|+|++|++ +..+
T Consensus 120 -~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 120 -FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp -EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred -eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 1222222 2456899999999866555 55578 9999997543321 11223456889999999996655 4468
Q ss_pred CeEEEEECCCcee---EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEE--eeeec
Q 008939 363 DLVQVWSMEDRKV---VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIV--VPLRR 436 (548)
Q Consensus 363 g~I~vwd~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~--~~~~~ 436 (548)
+.|++||+++++. +..+. +...+..++|+| || ++| ++...++.|.+||+.+++.. ..+..
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~sp-------dg------~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVG-TNNLPGTIVVSR-------DG------STVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECT-------TS------SEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CeEEEEECCCCcccceeeecc-CCCCCceEEECC-------CC------CEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 9999999999887 77776 446778999999 98 444 45556789999999998763 22221
Q ss_pred CCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE-EEECCCeEEEEeCC
Q 008939 437 GPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-TVCREGHIKIWMRP 513 (548)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~ 513 (548)
. +. ...........++|+||+ |+ ++..++.|++||+.
T Consensus 264 ~-----~~-----------------------------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 264 G-----LL-----------------------------------IDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp C-----CC-----------------------------------CCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred c-----cc-----------------------------------cCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 0 00 000011223678999984 54 55566799999998
Q ss_pred CCCc
Q 008939 514 GVAE 517 (548)
Q Consensus 514 ~~~~ 517 (548)
....
T Consensus 304 ~~~~ 307 (331)
T 3u4y_A 304 GKVV 307 (331)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-21 Score=189.01 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=180.2
Q ss_pred EEEEe-cCC-eEEEEEccC-CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-CcEEEEEeeeccccccc-ceee
Q 008939 144 YIIFN-VGD-AIFISDLNS-QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSVSLRQQLQDVGK-KLVG 218 (548)
Q Consensus 144 ~l~~~-~~d-~v~vwd~~~-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iwdl~~~~~~~~~-~~~~ 218 (548)
+++++ ..+ .|++||++. +..+.+..+ .+...+.+++|+|+ +.+|+++..+ +.|.+|++... .++ ....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spd---g~~l~~~~~~~~~v~~~~~~~~---~~~~~~~~ 78 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPD---KRYLYVGVRPEFRVLAYRIAPD---DGALTFAA 78 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTT---SSEEEEEETTTTEEEEEEECTT---TCCEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCC---CCEEEEeecCCCeEEEEEecCC---CCceeecc
Confidence 34443 444 999999964 221233333 36678999999998 7788888887 89999998721 011 1111
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEE-EeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
... ....+.+++|+|+++ .|++ +..++.|++||+.. +.. ...+..+..
T Consensus 79 ~~~-------~~~~~~~~~~s~dg~-~l~~~~~~~~~i~~~d~~~-~~~----------------------~~~~~~~~~ 127 (343)
T 1ri6_A 79 ESA-------LPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLED-GLP----------------------VGVVDVVEG 127 (343)
T ss_dssp EEE-------CSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEET-TEE----------------------EEEEEEECC
T ss_pred ccc-------cCCCCcEEEEcCCCC-EEEEEecCCCeEEEEECCC-Ccc----------------------ccccccccC
Confidence 111 123788999999999 5555 45588999999952 110 011122222
Q ss_pred cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-CeEEE----eeee-cCCceEEEEEccCCCEEEEEe-CCCeEEEEE
Q 008939 298 CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-EQLIC----GGKS-YYGALLCCAWSMDGKYILTGG-EDDLVQVWS 369 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~-~~~~~----~~~~-~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd 369 (548)
...+.+++|+|++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+||
T Consensus 128 -~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 128 -LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp -CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 24588899999999888887 899999999987 65432 2222 234788999999999776554 789999999
Q ss_pred CCC--cee--EEec---c-CC--CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC--CeEEeeeecC
Q 008939 370 MED--RKV--VAWG---E-GH--NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM--DEIVVPLRRG 437 (548)
Q Consensus 370 ~~~--~~~--~~~~---~-~h--~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~--~~~~~~~~~~ 437 (548)
++. ++. ...+ . ++ ...+..++|+| ||. +++++...|+.|.+||+.. +... .
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-------dg~-----~l~v~~~~~~~i~v~d~~~~~~~~~-~---- 269 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-------DGR-----HLYACDRTASLITVFSVSEDGSVLS-K---- 269 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-------TSS-----EEEEEETTTTEEEEEEECTTSCCEE-E----
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECC-------CCC-----EEEEEecCCCEEEEEEEcCCCCceE-E----
Confidence 954 332 2222 2 11 34677899999 882 3444666899999999973 2211 1
Q ss_pred CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCC
Q 008939 438 PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRP 513 (548)
Q Consensus 438 ~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~ 513 (548)
+..+..+.. +..++|+|++ |++++ .|+.|.+|++.
T Consensus 270 ----------------------------------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 ----------------------------------------EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ----------------------------------------EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ----------------------------------------eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 111122333 7889999974 66666 68999999654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=221.52 Aligned_cols=315 Identities=12% Similarity=0.103 Sum_probs=204.8
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEcC---------Cc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLNS---------GD 199 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~d---------g~ 199 (548)
.+..++|+|||++++.+.+..|++||+.++. ....+..+.. .+.+++|+|+ +.+|+++..+ +.
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~--~~~~~~~~~~~~~~v~~~~~SpD---g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNT--STVLIEGKKIESLRAIRYEISPD---REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCC--CEEEECTTTTTTTTCSEEEECTT---SSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCc--EEEEeccccccccccceEEECCC---CCEEEEEecCccceeecceee
Confidence 4567899999997766433499999999865 5555554443 4899999999 8889998774 78
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||+.+... +.+. ....+...+..++|+|+|+ .|+.++. +.|++||+.... ..........
T Consensus 93 i~~~d~~~~~~---~~l~-------~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~---- 155 (723)
T 1xfd_A 93 YVLSKIPHGDP---QSLD-------PPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKE---- 155 (723)
T ss_dssp EEEEESSSCCC---EECC-------CTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSC-CEEEECCCBT----
T ss_pred EEEEECCCCce---Eecc-------CCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCc-eEEEecCCCC----
Confidence 89999886210 1111 1112455688999999999 6777765 799999987622 1110000000
Q ss_pred eeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEEECCC-----------------------------
Q 008939 280 SVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATVGRDG----------------------------- 321 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~~~dg----------------------------- 321 (548)
.+ .+.++. +.+.+++|+|||++|++++.|+
T Consensus 156 -----------~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 156 -----------GV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp -----------TT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred -----------Cc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 00 001111 2347899999999999987653
Q ss_pred -----eEEEEeCCCCeEEEeeeec------CCceEEEEEccCCCEEEEEeC----CCeEEEEECCCceeEEeccC-CCCC
Q 008939 322 -----YLRVFDYSKEQLICGGKSY------YGALLCCAWSMDGKYILTGGE----DDLVQVWSMEDRKVVAWGEG-HNSW 385 (548)
Q Consensus 322 -----~v~vwd~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~~~~~~~-h~~~ 385 (548)
.|++||+.+++....+..+ ...+..++|+|||++|++... +..|++||+.++++...+.. +..+
T Consensus 224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 7999999988765555543 567899999999998877643 35799999999887665543 4455
Q ss_pred eE----EEEEecCCCCCCCCCCccceeEEEEE--EeCCC------eEEEEEC-CCCeE--EeeeecCCCCCCceecCCCC
Q 008939 386 VS----GVAFDSYWSQPNSDGTAETVMYRFGS--VGQDT------RLLLWDL-EMDEI--VVPLRRGPLGGSPTFSTGSQ 450 (548)
Q Consensus 386 V~----~v~~~p~~~~~~~dg~~~~~~~~l~s--~~~Dg------~i~lwd~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 450 (548)
+. .++|+| || +.|+. ...|+ .|.+||+ ..++. ...+
T Consensus 304 ~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---------------- 354 (723)
T 1xfd_A 304 LHRQNEEPVFSK-------DG------RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---------------- 354 (723)
T ss_dssp CCCCCCCCEECT-------TS------CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS----------------
T ss_pred EeccCCCceEcC-------CC------CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe----------------
Confidence 53 789999 98 44443 55677 5666773 33220 1111
Q ss_pred ccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE-EEEeCCe--EEEEEC-C--CeEEEEeCCCCC---ccccC
Q 008939 451 SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG-LIFTQES--VLTVCR-E--GHIKIWMRPGVA---ESQSS 521 (548)
Q Consensus 451 ~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~-l~fspd~--l~t~s~-D--g~I~iW~~~~~~---~~~~~ 521 (548)
..+...+.. ++|+||+ |+..+. | +.++||++.... .....
T Consensus 355 -------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 355 -------------------------------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp -------------------------------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred -------------------------------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 111223443 6899984 655544 4 889999976422 11111
Q ss_pred ----CCCc--EEEecCCCCceEeee
Q 008939 522 ----SSET--VLSTSSKDKPLLSSK 540 (548)
Q Consensus 522 ----~~~~--v~~~s~d~~~l~s~~ 540 (548)
+... ..+++||+++|+...
T Consensus 404 ~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ccccCCCCeEEEEECCCCCEEEEEc
Confidence 2332 348999999888653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-20 Score=186.41 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=185.3
Q ss_pred CCCceeEEeCCCCCEEEEec--------CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcE
Q 008939 130 STSMTNTNFDGKGTYIIFNV--------GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDV 200 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~--------~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I 200 (548)
...+..++|+|+|+++++.. ...|++||..++. .+..+.. ...+..++|+|+ +..++++. .++.|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~s~d---g~~l~v~~~~~~~v 113 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHN-DLKPFGATINNT---TQTLWFGNTVNSAV 113 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEE-SSCCCSEEEETT---TTEEEEEETTTTEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEec-CCCcceEEECCC---CCEEEEEecCCCEE
Confidence 34567899999999888766 2389999998854 6666664 456889999998 66555554 47899
Q ss_pred EEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.+||+.+. + +.......... ......+.+++|+|+++ .++++. .++.|++||..+.
T Consensus 114 ~~~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~------------ 174 (353)
T 3vgz_A 114 TAIDAKTG-----E-VKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNI------------ 174 (353)
T ss_dssp EEEETTTC-----C-EEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTT------------
T ss_pred EEEeCCCC-----e-eEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCC------------
Confidence 99998762 2 22211110000 00112378999999999 555554 5788999998752
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEcc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSM 351 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~sp 351 (548)
+.+..+..+...+.+++|+|++++|+++..++.|.+||+.+++.+..+.. +...+..++|+|
T Consensus 175 --------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 175 --------------KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp --------------EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred --------------ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 12233333345578899999999999999999999999999998877654 455688899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 352 DGKYILTGGE-DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 352 dg~~l~sgs~-dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
++++|+++.. ++.|.+||+.+++.+..+..+.. ..++|+| ||. +++++...++.|.+||+.+++.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~-------dg~-----~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP-------ARN-----EAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET-------TTT-----EEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC-------CCC-----EEEEEECCCCeEEEEECCCCeE
Confidence 9997777665 59999999999988877764432 5699999 882 3556666799999999999887
Q ss_pred Eeeeec
Q 008939 431 VVPLRR 436 (548)
Q Consensus 431 ~~~~~~ 436 (548)
+..+..
T Consensus 307 ~~~~~~ 312 (353)
T 3vgz_A 307 VKTFDT 312 (353)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 765543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-20 Score=186.85 Aligned_cols=266 Identities=14% Similarity=0.130 Sum_probs=193.8
Q ss_pred CCceEEEecCCCCCCceEEEEEc-------CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEE
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLN-------SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l 246 (548)
..+..++|+|+ +..|+++.. ++.|.+||+.+ ++ ...... ....+..++|+|+++.++
T Consensus 41 ~~~~~~~~s~d---g~~l~~~~~~~~~~~~~~~v~~~d~~~-----~~-~~~~~~-------~~~~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 41 KGAYEMAYSQQ---ENALWLATSQSRKLDKGGVVYRLDPVT-----LE-VTQAIH-------NDLKPFGATINNTTQTLW 104 (353)
T ss_dssp SSEEEEEEETT---TTEEEEEECCCTTTEESEEEEEECTTT-----CC-EEEEEE-------ESSCCCSEEEETTTTEEE
T ss_pred cCccceEECCC---CCEEEEEcCCCcCCCCCccEEEEcCCC-----Ce-EEEEEe-------cCCCcceEEECCCCCEEE
Confidence 46788999998 777888774 56799999875 22 222222 234577899999998555
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATV 317 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~ 317 (548)
++...++.|.+||..+.. .+..+..+. ..+.+++|+|++++++++
T Consensus 105 v~~~~~~~v~~~d~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 158 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGE--------------------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS 158 (353)
T ss_dssp EEETTTTEEEEEETTTCC--------------------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE
T ss_pred EEecCCCEEEEEeCCCCe--------------------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEE
Confidence 666678999999987621 122222221 126889999999988777
Q ss_pred E--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC----CCCCeEEEEE
Q 008939 318 G--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG----HNSWVSGVAF 391 (548)
Q Consensus 318 ~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~----h~~~V~~v~~ 391 (548)
. .++.|.+||+.+++.+..+..+...+.+++|+|++++|+++..++.|.+||+.+++.+..+.. +...+..++|
T Consensus 159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 159 GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 6 478999999999999888775666688999999999999999999999999999988777653 5667889999
Q ss_pred ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceee
Q 008939 392 DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471 (548)
Q Consensus 392 ~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d 471 (548)
+| ||. .++++...++.|.+||+.+++.+..+..
T Consensus 239 s~-------dg~-----~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------------------------- 271 (353)
T 3vgz_A 239 DT-------ARQ-----RAFITDSKAAEVLVVDTRNGNILAKVAA----------------------------------- 271 (353)
T ss_dssp ET-------TTT-----EEEEEESSSSEEEEEETTTCCEEEEEEC-----------------------------------
T ss_pred CC-------CCC-----EEEEEeCCCCEEEEEECCCCcEEEEEEc-----------------------------------
Confidence 99 882 3445555569999999999887655433
Q ss_pred cCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCeEEEEeCCCCCccc-cCCC--CcEEEecCCCCceEeeecc
Q 008939 472 VPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPGVAESQ-SSSS--ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 472 ~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~I~iW~~~~~~~~~-~~~~--~~v~~~s~d~~~l~s~~~~ 542 (548)
+ . ...++|+|++ + ++...++.|.+||+.+.+... .... ..-++++||+++|..+...
T Consensus 272 ------------~-~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 ------------P-E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ------------S-S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred ------------C-C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 1 1 1458899973 4 444478999999987765322 2222 2233889999987777655
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-21 Score=184.44 Aligned_cols=222 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee-cccccccceeeeeeeccCCc
Q 008939 150 GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ-QLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 150 ~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~ 227 (548)
.+ .|++||+.++. +..+..+...+.+++|+|+ +.+|+++. ++.|++||+.. .. ...... .
T Consensus 20 ~~~~i~~~d~~~~~---~~~~~~~~~~v~~~~~spd---g~~l~~~~-~~~i~~~d~~~~~~------~~~~~~-----~ 81 (297)
T 2ojh_A 20 MRSSIEIFNIRTRK---MRVVWQTPELFEAPNWSPD---GKYLLLNS-EGLLYRLSLAGDPS------PEKVDT-----G 81 (297)
T ss_dssp CCEEEEEEETTTTE---EEEEEEESSCCEEEEECTT---SSEEEEEE-TTEEEEEESSSCCS------CEECCC-----T
T ss_pred cceeEEEEeCCCCc---eeeeccCCcceEeeEECCC---CCEEEEEc-CCeEEEEeCCCCCC------ceEecc-----c
Confidence 44 99999998643 3344457789999999999 77888875 88999999875 21 111110 0
Q ss_pred ccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 228 VNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 228 ~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+.+++|+|++. +|+++. .++...||.++..+.. ...+..+ ..+..+
T Consensus 82 ~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~-~~~~~~ 134 (297)
T 2ojh_A 82 FATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT-------------------------PRLMTKN-LPSYWH 134 (297)
T ss_dssp TCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC-------------------------CEECCSS-SSEEEE
T ss_pred cccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc-------------------------eEEeecC-CCccce
Confidence 1246789999999999 788877 4456666666532211 1111112 348889
Q ss_pred EECCCCCEEE-EEECCCeEEEEeCC--CCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECC-CceeEEecc
Q 008939 306 AFSTDGTYLA-TVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 306 ~~sp~g~~l~-s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+|+|++++|+ ++..|+.+++|++. +++ ...+..+...+.+++|+|++++|+.++ .++.++||+++ .+..+..+.
T Consensus 135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (297)
T 2ojh_A 135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT 213 (297)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred EECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence 9999999877 67789999999863 343 345566778899999999999888766 58999999986 556677788
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----------CeEEEEECCCCeE
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----------TRLLLWDLEMDEI 430 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----------g~i~lwd~~~~~~ 430 (548)
.|...+..++|+| || .+|+.++.+ ..|.+||+.+++.
T Consensus 214 ~~~~~~~~~~~s~-------dg------~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 214 DSAYGDWFPHPSP-------SG------DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CCSEEEEEEEECT-------TS------SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cCCcccCCeEECC-------CC------CEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 8888999999999 98 577777665 5699999987654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-20 Score=181.79 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=173.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecC--CeEEEEEcc--CCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG--DAIFISDLN--SQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYS 202 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~--~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~i 202 (548)
.|...+..++|+|+|++++++.. +.|++|++. ++....+..+.... .+.+++|+|+ +.+|+++.. ++.|.+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d---g~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ---GQFVFVGSYNAGNVSV 110 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT---SSEEEEEETTTTEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC---CCEEEEEecCCCeEEE
Confidence 45667888999999998887665 499999998 43333445555444 8999999999 777777765 788999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
||+... . ......... ....+.+++|+|+++ .|++++ .++.|++||+...+....
T Consensus 111 ~d~~~~--~-~~~~~~~~~-------~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~------------- 166 (343)
T 1ri6_A 111 TRLEDG--L-PVGVVDVVE-------GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVA------------- 166 (343)
T ss_dssp EEEETT--E-EEEEEEEEC-------CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEE-------------
T ss_pred EECCCC--c-ccccccccc-------CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceee-------------
Confidence 999420 0 011111111 234588999999998 566655 899999999975322100
Q ss_pred ecCCCCCCCCee--Eeeec-CCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC--CeE--EEeee---ec---CCceEEE
Q 008939 282 AHPRYSKSNPIA--RWHIC-QGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK--EQL--ICGGK---SY---YGALLCC 347 (548)
Q Consensus 282 ~~~~~~~~~~~~--~~~~h-~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~--~~~--~~~~~---~~---~~~v~~l 347 (548)
+. .+..+ ...+.+++|+|++++|++++ .++.|.+||+.. ++. ..... .. ...+..+
T Consensus 167 ----------~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 167 ----------QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ----------EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ----------ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 00 11111 24688899999999776665 789999999953 433 22222 11 2356789
Q ss_pred EEccCCCEEEE-EeCCCeEEEEECC----CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEE
Q 008939 348 AWSMDGKYILT-GGEDDLVQVWSME----DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLL 421 (548)
Q Consensus 348 ~~spdg~~l~s-gs~dg~I~vwd~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~ 421 (548)
+|+|++++|++ +..++.|.+||++ +.+.+..+..+.. +..++|+| || .+|++++ .|+.|.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-------dg------~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-------SG------KYLIAAGQKSHHIS 302 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-------TS------SEEEEECTTTCEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-------CC------CEEEEecCCCCeEE
Confidence 99999998775 4478999999998 3345555654544 88999999 88 5666666 689999
Q ss_pred EEE--CCCCeE
Q 008939 422 LWD--LEMDEI 430 (548)
Q Consensus 422 lwd--~~~~~~ 430 (548)
+|+ ..+++.
T Consensus 303 v~~~d~~~g~~ 313 (343)
T 1ri6_A 303 VYEIVGEQGLL 313 (343)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEcCCCcee
Confidence 995 446643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=183.93 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=188.5
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCC--CceEEEecCCCCCCceEEE-EEcCCcEEEEEeeecccccccceee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS--NPVCHAFDQDAKDGHDLLI-GLNSGDVYSVSLRQQLQDVGKKLVG 218 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~l~~-g~~dg~I~iwdl~~~~~~~~~~~~~ 218 (548)
++++++..+ .|++||+.++. .+..+..... .+.+++|+|+ +..+++ +..++.|.+||+.+. + ...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~~~~~v~~~d~~~~-----~-~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESLVKIDLVTG-----E-TLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEEEEEETTTC-----C-EEE
T ss_pred cEEEEcCCCCeEEEEECCCCc--EEEEEEcCCCCCCccceEEcCC---CCEEEEEeCCCCeEEEEECCCC-----C-eEe
Confidence 356666655 99999998744 6666664332 5899999999 655554 455789999998751 2 221
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
...... ...+...+.+++|+|+++ .|+++. .++.|++||+....
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------------------- 126 (337)
T 1pby_B 71 RIDLST-PEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS---------------------- 126 (337)
T ss_dssp EEECCB-TTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------------------
T ss_pred eEEcCC-cccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------------------
Confidence 111110 001223577899999998 677765 57999999987521
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-C--
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-D-- 363 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g-- 363 (548)
.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+.. ...+.|+|+++.|+..+.+ +
T Consensus 127 ----~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 127 ----RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVM 198 (337)
T ss_dssp ----EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEE
T ss_pred ----EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCce
Confidence 1122221 2457789999999988887 68899999999988776654431 1133789999876655433 2
Q ss_pred ---------------------eEEEEECCCceeE-EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEE
Q 008939 364 ---------------------LVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLL 421 (548)
Q Consensus 364 ---------------------~I~vwd~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~ 421 (548)
.|.+||+++++.. ..+..+...+.+++|+| || .+++++ ++.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-------dg------~~l~~~--~~~v~ 263 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-------AK------TRAFGA--YNVLE 263 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-------TS------SEEEEE--ESEEE
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC-------CC------CEEEEe--CCeEE
Confidence 4689999988764 23445677889999999 98 566666 79999
Q ss_pred EEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE
Q 008939 422 LWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL 499 (548)
Q Consensus 422 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~ 499 (548)
+||+.+++.+..+.. ...+.+++|+|++ |+
T Consensus 264 ~~d~~~~~~~~~~~~------------------------------------------------~~~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 264 SFDLEKNASIKRVPL------------------------------------------------PHSYYSVNVSTDGSTVW 295 (337)
T ss_dssp EEETTTTEEEEEEEC------------------------------------------------SSCCCEEEECTTSCEEE
T ss_pred EEECCCCcCcceecC------------------------------------------------CCceeeEEECCCCCEEE
Confidence 999998887654432 2346789999974 77
Q ss_pred EEECCCeEEEEeCCCCC
Q 008939 500 TVCREGHIKIWMRPGVA 516 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~~~ 516 (548)
+++.|+.|++||+.+.+
T Consensus 296 ~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 296 LGGALGDLAAYDAETLE 312 (337)
T ss_dssp EESBSSEEEEEETTTCC
T ss_pred EEcCCCcEEEEECcCCc
Confidence 78899999999998765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=204.65 Aligned_cols=307 Identities=11% Similarity=0.034 Sum_probs=204.1
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc-cceeeeeeec----cC---CcccCcceEEEEEecCCCcEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG-KKLVGAHHYN----KD---GSVNNSRCTSVTWVPGGDGAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~-~~~~~~~~~~----~~---~~~~~~~v~~l~~~p~~~~~l 246 (548)
.+..+.|. . ..++.+..++ | +||+.+... . +.+....... .+ ...+...|.+++|+|+ . .+
T Consensus 27 ~~~~~~w~-g----~~~~~~~~~~-i-~~d~~tg~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~-~~ 95 (706)
T 2z3z_A 27 YVVGLQWM-G----DNYVFIEGDD-L-VFNKANGKS--AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G-LV 95 (706)
T ss_dssp -CTTCEEE-T----TEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-T-EE
T ss_pred cCCCCcCc-C----CeEEEEeCCc-E-EEECCCCcE--eeEEeechhHhhhhccchhccccccccCceeEEECCC-C-eE
Confidence 34445666 2 2466677777 8 999886211 0 1111111000 00 0012256999999999 5 45
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 008939 247 VVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326 (548)
Q Consensus 247 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vw 326 (548)
+.+ .++.|++||+... ....+..+...+.+++|+|||++|+++ .|+.|++|
T Consensus 96 ~~~-~~~~i~~~d~~~~---------------------------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~ 146 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLAR---------------------------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIA 146 (706)
T ss_dssp EEE-ETTEEEEEETTTT---------------------------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEE
T ss_pred EEE-ECCEEEEEECCCC---------------------------ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEE
Confidence 544 4599999999752 122233345678889999999999985 68999999
Q ss_pred eCCC-----CeEEEeeeecCCc--------------eEEEEEccCCCEEEEEe---------------------------
Q 008939 327 DYSK-----EQLICGGKSYYGA--------------LLCCAWSMDGKYILTGG--------------------------- 360 (548)
Q Consensus 327 d~~~-----~~~~~~~~~~~~~--------------v~~l~~spdg~~l~sgs--------------------------- 360 (548)
|+.+ ++.......+... +.+++|+|||++|++++
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~ 226 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence 9998 7765543333332 47899999999999987
Q ss_pred ------CCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCC
Q 008939 361 ------EDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEM 427 (548)
Q Consensus 361 ------~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~ 427 (548)
.+..|++||+++++...... .|...+..++|+| || ..|++++.|. .|++||+.+
T Consensus 227 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 227 MAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-------DE------NILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp BTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-------TS------SEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-------CC------CEEEEEEeCCCCCeeEEEEEECCC
Confidence 45689999999987655442 5778899999999 99 6788877765 999999999
Q ss_pred CeEEeeee-cCC-----CCCCceecC--CCCccccCCeeeecccCCCCceeecC-CCCceEEeecCCCCeeE-EEEeCCe
Q 008939 428 DEIVVPLR-RGP-----LGGSPTFST--GSQSAHWDNVCPVGTLQPAPSMRDVP-KLSPLVAHRVHTEPLSG-LIFTQES 497 (548)
Q Consensus 428 ~~~~~~~~-~~~-----~~~~~~~~~--~~~~~~~d~~~~~g~~~~~~~~~d~~-~~~~~~~~~~h~~~V~~-l~fspd~ 497 (548)
++....+. ... ....+.|++ ++. .+..+..++...+|++. ....+..+..|...+.. ++|+|++
T Consensus 294 g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~------~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg 367 (706)
T 2z3z_A 294 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ------FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG 367 (706)
T ss_dssp CCEEEEEEEEECSSCCCCCSCCEECTTCSSE------EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS
T ss_pred CceeeEEEEccCCCeECccCCceeecCCCCE------EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC
Confidence 83333332 211 124567877 652 33455556678888775 55667777788888887 7999984
Q ss_pred --EE-EEECCC----eEEEEeCCCCCccccCCCCcEE--EecCCCCceEeee
Q 008939 498 --VL-TVCREG----HIKIWMRPGVAESQSSSSETVL--STSSKDKPLLSSK 540 (548)
Q Consensus 498 --l~-t~s~Dg----~I~iW~~~~~~~~~~~~~~~v~--~~s~d~~~l~s~~ 540 (548)
|+ ++..++ .|..|++.++......+...+. ++|||+++|+...
T Consensus 368 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 368 TRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp SEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEE
T ss_pred CEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEe
Confidence 54 445555 6777787776644444555554 8899999988763
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=201.96 Aligned_cols=288 Identities=9% Similarity=0.078 Sum_probs=196.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeee---
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ--- 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~--- 207 (548)
..+..++|+|| ..++++.+..+++||+.++. +..+..+...+.+++|+|+ +..|+. ..++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~Spd---G~~la~-~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARK---VTYLFDTNEETASLDFSPV---GDRVAY-VRNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTE---EEEEECCTTCCTTCEECTT---SSEEEE-EETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCc---eEEccCCcccccCCcCCCC---CCEEEE-EECCeEEEEecCcccc
Confidence 45789999999 77777777899999998643 3444446677899999999 777887 4789999999875
Q ss_pred --cccccccceeeeeee---c--cCCcccCcceEEEEEecCCCcEEEEEe------------------------------
Q 008939 208 --QLQDVGKKLVGAHHY---N--KDGSVNNSRCTSVTWVPGGDGAFVVGH------------------------------ 250 (548)
Q Consensus 208 --~~~~~~~~~~~~~~~---~--~~~~~~~~~v~~l~~~p~~~~~l~s~~------------------------------ 250 (548)
... ..+...... + .....+...+.++.|+||++ .|++++
T Consensus 154 ~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 154 GMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 210 011000000 0 00000122368999999999 777776
Q ss_pred ---CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----e
Q 008939 251 ---ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-----Y 322 (548)
Q Consensus 251 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~ 322 (548)
.+..|++||+..... .. +.....|...+.+++|+|||++|++++.|+ .
T Consensus 230 ~~~~~~~l~~~d~~~~~~-~~-----------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 285 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKT-VY-----------------------LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285 (706)
T ss_dssp SCCCEEEEEEEETTTTEE-EE-----------------------CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred CCCCeeEEEEEECCCCce-Ee-----------------------eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence 346788888865210 00 000013446789999999999999988776 8
Q ss_pred EEEEeCCCC-eEEEeeee-cCC---ceEEEEEcc--CCCEEEEEeCCCeEEEEECC-CceeEEeccCCCCCeEE-EEEec
Q 008939 323 LRVFDYSKE-QLICGGKS-YYG---ALLCCAWSM--DGKYILTGGEDDLVQVWSME-DRKVVAWGEGHNSWVSG-VAFDS 393 (548)
Q Consensus 323 v~vwd~~~~-~~~~~~~~-~~~---~v~~l~~sp--dg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h~~~V~~-v~~~p 393 (548)
|++||+.++ +....... +.. .+.+++|+| ||++|+++..|+.++||+++ +++.+..+..|...+.. ++|+|
T Consensus 286 v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT
T ss_pred EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC
Confidence 999999998 43332222 222 246789999 99999999999999999886 66777788888888877 79999
Q ss_pred CCCCCCCCCCccceeEEEE-EEeCCC----eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 394 YWSQPNSDGTAETVMYRFG-SVGQDT----RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 394 ~~~~~~~dg~~~~~~~~l~-s~~~Dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
|| ..|+ ++..++ .|..||+.+++.. .+
T Consensus 366 -------dg------~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------------------------------- 397 (706)
T 2z3z_A 366 -------KG------TRLYFESTEASPLERHFYCIDIKGGKTK-DL---------------------------------- 397 (706)
T ss_dssp -------TS------SEEEEEESSSCTTCBEEEEEETTCCCCE-ES----------------------------------
T ss_pred -------CC------CEEEEEecCCCCceEEEEEEEcCCCCce-ec----------------------------------
Confidence 88 4554 444454 6777777665421 11
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCCe--EEEE-ECC---CeEEEEeCCCCC
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV-CRE---GHIKIWMRPGVA 516 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~-s~D---g~I~iW~~~~~~ 516 (548)
.|...+..++|+||+ |+.. +.+ +.|++||+.+++
T Consensus 398 --------------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 --------------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp --------------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred --------------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 134568889999984 5544 333 569999987664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=181.06 Aligned_cols=261 Identities=13% Similarity=0.158 Sum_probs=178.5
Q ss_pred CCCCCceeEEeCCCCCEEEEecC--C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG--D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSV 203 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~--d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iw 203 (548)
.+...+..++|+|+|++++++.. + .|++|++..+..+.+..+..+...+..++|+|+ +.+|+++. .++.|.+|
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd---g~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA---RQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---CCEEEEEeCCCCEEEEE
Confidence 34566778999999994444432 3 999999976543455555556778999999999 77788887 67899999
Q ss_pred EeeecccccccceeeeeeeccC---CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKD---GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
++... ...+.+ ........ .......+.+++|+|+++ ++++...++.|++|++...+...
T Consensus 114 ~~~~~--g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~------------- 176 (347)
T 3hfq_A 114 KIAAD--GALTLT-DTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS------------- 176 (347)
T ss_dssp EECTT--SCEEEE-EEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE-------------
T ss_pred EeCCC--CCeeec-ceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE-------------
Confidence 99631 001111 11110000 001234588999999999 88888889999999998422210
Q ss_pred eecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC--CeE--EEeeeecC------CceEEEE
Q 008939 281 VAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK--EQL--ICGGKSYY------GALLCCA 348 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~--~~~--~~~~~~~~------~~v~~l~ 348 (548)
.+..+..+ ...+..++|+|||++|+++ ..++.|.+|++.. ++. +..+.... ..+..++
T Consensus 177 ----------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 177 ----------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp ----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred ----------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 01111111 1357789999999976664 5678999999874 553 22232222 3588899
Q ss_pred EccCCCEE-EEEeCCCeEEEEECCC---ceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-CCeEEEE
Q 008939 349 WSMDGKYI-LTGGEDDLVQVWSMED---RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-DTRLLLW 423 (548)
Q Consensus 349 ~spdg~~l-~sgs~dg~I~vwd~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg~i~lw 423 (548)
|+|||++| ++...++.|.+||+.. .+.+..+..+...+..++|+| || ++|++++. ++.|.+|
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-------TE------AFVVVVNQNTDNATLY 313 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-------TS------SEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-------CC------CEEEEEEcCCCcEEEE
Confidence 99999977 4556689999999973 355666666777889999999 99 56666665 5899999
Q ss_pred --ECCCCeEE
Q 008939 424 --DLEMDEIV 431 (548)
Q Consensus 424 --d~~~~~~~ 431 (548)
|..++++.
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-21 Score=183.24 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=175.2
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccC-CCCCCeEEEecC-CCCceEEEecCCCCCCceEEEEE--cCCcEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNS-QDKDPIKSIHFS-NSNPVCHAFDQDAKDGHDLLIGL--NSGDVYS 202 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~-~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~l~~g~--~dg~I~i 202 (548)
..|...+.+++|+|+|++++++..+.|++||+.+ +. .......+ ...+.+++|+|+ +.+|+++. .++.+.|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPS--PEKVDTGFATICNNDHGISPD---GALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCS--CEECCCTTCCCBCSCCEECTT---SSEEEEEECTTTSSCEE
T ss_pred ccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCC--ceEeccccccccccceEECCC---CCEEEEEEeCCCCcceE
Confidence 3467889999999999999998877999999987 54 33333333 357789999999 77899988 3355666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|.++... ..... .. ....+.+++|+|+++.+++++..|+.++||+++..+.
T Consensus 113 ~~~~~~~----~~~~~-~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----------------- 163 (297)
T 2ojh_A 113 YLLPSTG----GTPRL-MT-------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----------------- 163 (297)
T ss_dssp EEEETTC----CCCEE-CC-------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-----------------
T ss_pred EEEECCC----CceEE-ee-------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-----------------
Confidence 6654310 11111 10 2334889999999994444788999999999764221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC-CCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS-KEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+..|...+.+++|+|++++|++++ .++.+++|++. .+..+..+..+...+.+++|+|++++|++++
T Consensus 164 --------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 164 --------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp --------CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred --------cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence 1233344557899999999999888776 58999999986 4555666777778899999999999998887
Q ss_pred CC-----------CeEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 361 ED-----------DLVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 361 ~d-----------g~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
.+ ..|.+||+++++. +..+.+|...+..++|+| || .+|++++.|
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~ 292 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-------DG------DEFAYVRYF 292 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-------TS------SEEEEEEEC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-------CC------CEEEEEEec
Confidence 65 5699999998765 444557888999999999 98 567776655
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-19 Score=176.29 Aligned_cols=255 Identities=10% Similarity=0.101 Sum_probs=174.7
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...+++...++.|.+||+.+. + +..... .+...+ .++|+|+++.+++++..++.|++||+...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-----~-~~~~~~------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~---- 72 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-----E-ILNQIT------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE---- 72 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-----C-EEEEEE------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS----
T ss_pred CEEEEEecCCCeEEEEeCccc-----c-eeeeEE------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC----
Confidence 445777778899999998762 2 222111 134455 99999999844444555899999999762
Q ss_pred CCcccccccceeeeecCCCCCCCC-eeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCc
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNP-IARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGA 343 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~ 343 (548)
.. ...+..+..+..+++|+|++++|++...++ .|.+||+.+++.+..+..+ ..
T Consensus 73 ----------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~ 129 (331)
T 3u4y_A 73 ----------------------PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YD 129 (331)
T ss_dssp ----------------------SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TT
T ss_pred ----------------------ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CC
Confidence 11 334444555565599999999999555553 8999999999988777644 45
Q ss_pred eEEEEEccCCCEEEE-EeCCCe-EEEEECCCceeE----EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 344 LLCCAWSMDGKYILT-GGEDDL-VQVWSMEDRKVV----AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 344 v~~l~~spdg~~l~s-gs~dg~-I~vwd~~~~~~~----~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
..+++|+|||++|++ ...++. |.+|++.....+ .....+...+..++|+| ||. ++++++..+
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-------dg~-----~l~v~~~~~ 197 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-------DGN-----FAFVANLIG 197 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-------TSS-----EEEEEETTT
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-------CCC-----EEEEEeCCC
Confidence 789999999985554 456678 999999764322 11123455689999999 982 345666678
Q ss_pred CeEEEEECCCCeE---EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEe
Q 008939 418 TRLLLWDLEMDEI---VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494 (548)
Q Consensus 418 g~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fs 494 (548)
+.|.+||+.+++. +..+. +...+..++|+
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~s 229 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVG------------------------------------------------TNNLPGTIVVS 229 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEE------------------------------------------------CSSCCCCEEEC
T ss_pred CeEEEEECCCCcccceeeecc------------------------------------------------CCCCCceEEEC
Confidence 9999999988775 32221 12456789999
Q ss_pred CCe--EE-EEECCCeEEEEeCCCCCccc------c----CCC---CcEEEecCCCCceEeeecc
Q 008939 495 QES--VL-TVCREGHIKIWMRPGVAESQ------S----SSS---ETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 495 pd~--l~-t~s~Dg~I~iW~~~~~~~~~------~----~~~---~~v~~~s~d~~~l~s~~~~ 542 (548)
||+ |+ +...++.|.+||+.+++... . ... ..-++++||+++|+++...
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 984 44 44568899999998765411 0 111 1225899999988766544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-20 Score=190.90 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=165.9
Q ss_pred EecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc---c--cceeeeee
Q 008939 147 FNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV---G--KKLVGAHH 221 (548)
Q Consensus 147 ~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~---~--~~~~~~~~ 221 (548)
+...+.+++|+-.. . .....+.+++++++ +.++++++.++ |++|+........ . ..+.....
T Consensus 19 F~~~~~vri~~~~~----~-----~~~~~~n~lavs~~---~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
T 2oit_A 19 FRALKKVRIFDSPE----E-----LPKERSSLLAVSNK---YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ 85 (434)
T ss_dssp EEECCEEECSCCCS----S-----CCCSCCBCEEEETT---TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC
T ss_pred eeeeeeEEecCCcc----c-----cCCCCccEEEEecC---CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc
Confidence 44446788876432 1 12346788999998 77899998887 9998875421100 0 00100000
Q ss_pred eccCCcccCcceEEEEEecCCCcEEE----EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFV----VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~----s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
.....+...|++++|+|++. +|+ +++.|+.|+|||+.......... . .....+..+.+
T Consensus 86 --~~~~~~~~~v~~l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~-----~----------~~~~~~~~~~~ 147 (434)
T 2oit_A 86 --GLLVPMKFPIHHLALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQ-----K----------RPFAYHKLLKD 147 (434)
T ss_dssp --CEEECCSSCEEEEEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSS-----C----------CCSEEEECCCS
T ss_pred --cccccCCCcccEEEEcCCCC-EEEEEEeccCCCceEEEEEccccccCCcCC-----c----------ceeeeeeccCC
Confidence 00011456799999999999 777 78889999999987521000000 0 00011344566
Q ss_pred cCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE
Q 008939 298 CQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 298 h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
|...|.+++|+|+ +++|++++.||.|++||++++..+.....|...|.+++|+|+|++|++|+.|+.|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 8899999999997 8899999999999999999987776777788899999999999999999999999999998 5555
Q ss_pred EeccCC-------CCCeEEEEEecCCCCCCCCCCccceeEEEEE-EeCCC------eEEEEECCCC
Q 008939 377 AWGEGH-------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGS-VGQDT------RLLLWDLEMD 428 (548)
Q Consensus 377 ~~~~~h-------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s-~~~Dg------~i~lwd~~~~ 428 (548)
..+..| ...|.+++|++ ++ .++++ ...|| .+++||++..
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~-------~~------~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIG-------TY------VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEE-------TT------EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccCCcccCCCCceeEEEEEEec-------Cc------eEEEEEccCCCccCCCCceEEEEeccC
Confidence 554433 33899999998 77 44433 43443 3999999865
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-20 Score=196.38 Aligned_cols=238 Identities=12% Similarity=-0.003 Sum_probs=175.3
Q ss_pred CCCceeEEeCCCCCEEEEecC-C-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEc---CCcEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN---SGDVYSV 203 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iw 203 (548)
..++..++|+|||+.|++.+. + +++||+++++ ....+..+. ..+..++|+|+ ..++++.. +....+|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---CcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEE
Confidence 446889999999999999765 5 9999998643 345555555 47889999986 35666654 3445666
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.+.. ++.+... . .. ....+...+|+|+++.++++...++.+.+||+....
T Consensus 94 ~~~~--~~~g~~~-~-l~-------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~------------------- 143 (582)
T 3o4h_A 94 KVNT--SRPGEEQ-R-LE-------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG------------------- 143 (582)
T ss_dssp EEET--TSTTCCE-E-CT-------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-------------------
T ss_pred EEec--cCCCccc-c-cc-------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-------------------
Confidence 5543 0011111 0 00 122344678999987666666666667799987521
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
...+..+.. .+++|+|||++|++++.| ..|++||+.+++.. .+..|.+.+..++|+|||++|+++
T Consensus 144 --------~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 144 --------LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGL 212 (582)
T ss_dssp --------EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEE
T ss_pred --------EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEc
Confidence 111112222 789999999999988877 78999999988765 567788889999999999999988
Q ss_pred eCCC--eEEEEECCCceeEEeccCCCCCeEEEE--------EecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 360 GEDD--LVQVWSMEDRKVVAWGEGHNSWVSGVA--------FDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 360 s~dg--~I~vwd~~~~~~~~~~~~h~~~V~~v~--------~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..++ .|++||+++++.. .+.+|...+..++ |+| || .++++++.|+.++||++ ++
T Consensus 213 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-------dg------~~~~~~~~~g~~~l~~~--g~ 276 (582)
T 3o4h_A 213 ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-------DG------RLAVVARREGRSAVFID--GE 276 (582)
T ss_dssp ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-------TS------CEEEEEEETTEEEEEET--TE
T ss_pred cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-------CC------cEEEEEEcCCcEEEEEE--CC
Confidence 8888 8999999998887 7778888787777 999 99 78999999999999999 55
Q ss_pred EE
Q 008939 430 IV 431 (548)
Q Consensus 430 ~~ 431 (548)
++
T Consensus 277 ~~ 278 (582)
T 3o4h_A 277 RV 278 (582)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-18 Score=171.29 Aligned_cols=267 Identities=10% Similarity=0.119 Sum_probs=172.8
Q ss_pred CCCCceeEEeCCCCCEEEEecC-----CeEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVG-----DAIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDV 200 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~-----d~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I 200 (548)
+...+..++|+|+|++|+++.. ..|.+|+++.. ....+.........+..+++ + +.+|+++. .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--d---g~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--N---GKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--C---SSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--C---CCEEEEEECCCCEE
Confidence 5566778999999998888766 38999998763 22234444445567788888 4 66676666 57889
Q ss_pred EEEEeeecccccccceeeeeeeccC----CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC-C-ccccc
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKD----GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS-S-FPVIK 274 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~-~~~~~ 274 (548)
.+|++... .....+......... ...+...+.+++|+|+++.++++...++.|++|+++....... . +....
T Consensus 123 ~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 123 TVFPIGQD--GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEBCTT--SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEeCCC--CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 99998742 111111111111000 0112345689999999984445555689999999976331000 0 00000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEE--Eee---eecCCceEEEE
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLI--CGG---KSYYGALLCCA 348 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~--~~~---~~~~~~v~~l~ 348 (548)
.. ......+...+..++|+|||++|+++. .++.|.+||+.++++. ..+ ..+......++
T Consensus 201 ~~---------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 201 TP---------------EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp EE---------------EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred cc---------------cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 00 000011235678899999999888877 6899999999877652 222 22334578999
Q ss_pred EccCCCEEEEEeCC--CeEEEEECC--Cce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEE
Q 008939 349 WSMDGKYILTGGED--DLVQVWSME--DRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLL 421 (548)
Q Consensus 349 ~spdg~~l~sgs~d--g~I~vwd~~--~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~ 421 (548)
|+|||++|+++..+ +.|.+|+++ +++ .+..+.. ...+..++|+| || ++|++++ .++.|.
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-------dg------~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-------NG------KYLLVACRDTNVIQ 331 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-------TS------CEEEEEETTTTEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-------CC------CEEEEEECCCCCEE
Confidence 99999998776654 899999996 344 4455554 56788999999 99 5666666 678999
Q ss_pred EEE--CCCCeEE
Q 008939 422 LWD--LEMDEIV 431 (548)
Q Consensus 422 lwd--~~~~~~~ 431 (548)
+|+ ..++++.
T Consensus 332 v~~~d~~~g~~~ 343 (361)
T 3scy_A 332 IFERDQATGLLT 343 (361)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEECCCCcEe
Confidence 964 4566544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-20 Score=200.43 Aligned_cols=268 Identities=11% Similarity=0.058 Sum_probs=182.5
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
.+.+++|+|+ +.++++ +.||.|++||+.+. +.. .... ........|.+++|+||++ .|++++.+
T Consensus 18 ~~~~~~~spd---g~~~~~-~~dg~i~~~d~~~g-----~~~-~~~~---~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~ 83 (723)
T 1xfd_A 18 HDPEAKWISD---TEFIYR-EQKGTVRLWNVETN-----TST-VLIE---GKKIESLRAIRYEISPDRE-YALFSYNVEP 83 (723)
T ss_dssp CCCCCCBSSS---SCBCCC-CSSSCEEEBCGGGC-----CCE-EEEC---TTTTTTTTCSEEEECTTSS-EEEEEESCCC
T ss_pred cccccEEcCC---CcEEEE-eCCCCEEEEECCCC-----cEE-EEec---cccccccccceEEECCCCC-EEEEEecCcc
Confidence 4678899998 666655 78999999998762 211 1111 0000112589999999999 78887764
Q ss_pred -------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 253 -------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 253 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+.|++||+..... ..+ .....|...+..++|||||++|++++. +.|++
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~--~~l----------------------~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~ 138 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDP--QSL----------------------DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYY 138 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCC--EEC----------------------CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEE
T ss_pred ceeecceeeEEEEECCCCce--Eec----------------------cCCccccccccccEECCCCCEEEEEEC-CeEEE
Confidence 7889999986321 001 001123345888999999999999886 79999
Q ss_pred EeCCCCeEEEeeeecCCc------------------eEEEEEccCCCEEEEEeCCC------------------------
Q 008939 326 FDYSKEQLICGGKSYYGA------------------LLCCAWSMDGKYILTGGEDD------------------------ 363 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~------------------v~~l~~spdg~~l~sgs~dg------------------------ 363 (548)
||+.+++.......+... +.+++|+|||++|++++.|+
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 999988766554443332 37899999999999987553
Q ss_pred ----------eEEEEECCCceeEEeccCC------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC----CCeEEEE
Q 008939 364 ----------LVQVWSMEDRKVVAWGEGH------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ----DTRLLLW 423 (548)
Q Consensus 364 ----------~I~vwd~~~~~~~~~~~~h------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~----Dg~i~lw 423 (548)
.|++||+.+++....+..+ ...+..++|+| || ++|++... +..|++|
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-------Dg------~~l~~~~~~~~~~~~i~~~ 285 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-------ST------KVAVTWLNRAQNVSILTLC 285 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-------SS------EEEEEEEETTSCEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-------CC------eEEEEEEcCCCCeEEEEEE
Confidence 7999999988765666654 67899999999 99 67766543 3679999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe----eEEEEeCCe--
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL----SGLIFTQES-- 497 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V----~~l~fspd~-- 497 (548)
|+.++++...+.. .|...+ ..++|+||+
T Consensus 286 d~~~g~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~spdg~~ 319 (723)
T 1xfd_A 286 DATTGVCTKKHED----------------------------------------------ESEAWLHRQNEEPVFSKDGRK 319 (723)
T ss_dssp ETTTCCEEEEEEE----------------------------------------------ECSSCCCCCCCCCEECTTSCS
T ss_pred eCCCCcceEEEEe----------------------------------------------ccCCEEeccCCCceEcCCCCe
Confidence 9998886654322 111222 367899985
Q ss_pred EEE--EECCC------eEEEEe-CCCCC---ccccC-CCCcE---EEecCCCCceEeee
Q 008939 498 VLT--VCREG------HIKIWM-RPGVA---ESQSS-SSETV---LSTSSKDKPLLSSK 540 (548)
Q Consensus 498 l~t--~s~Dg------~I~iW~-~~~~~---~~~~~-~~~~v---~~~s~d~~~l~s~~ 540 (548)
|+. ...|+ .|.+|| ..++. ..... ....+ .+++||++.|+...
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence 543 55777 577777 44443 22222 22222 47999999987553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=170.92 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=174.9
Q ss_pred CeEEEEEccCCCCCCeE-EEecCCCCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCC
Q 008939 151 DAIFISDLNSQDKDPIK-SIHFSNSNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDG 226 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~-~~~~~~~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 226 (548)
+.+++|+++....+... ....+...+..++|+|+ +. |+++.. ++.|++||+.... .+.+....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd---g~-l~~~~~~~~~~~v~~~~~~~g~---~~~~~~~~------ 82 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK---DC-LYSVDKEDDEGGIAAWQIDGQT---AHKLNTVV------ 82 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT---CE-EEEEEEETTEEEEEEEEEETTE---EEEEEEEE------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC---Ce-EEEEEecCCCceEEEEEecCCc---EEEeeeee------
Confidence 36777877653211111 12234568899999998 76 555554 5899999996421 11111111
Q ss_pred cccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 227 SVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 227 ~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+..++|+|+++ +|++++ .++.|.+|++...+....... . ... ...+. ...+...+.++
T Consensus 83 -~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~-~--------~~~---~~~p~--~~~~~~~~~~~ 146 (347)
T 3hfq_A 83 -APGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDT-V--------QHS---GHGPR--PEQDGSHIHYT 146 (347)
T ss_dssp -EESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEE-E--------ECC---CCCSS--TTCSSCCEEEE
T ss_pred -cCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecce-e--------ecC---CCCCC--ccccCCCceEE
Confidence 1456788999999999 666666 789999999975332111000 0 000 00000 00122458899
Q ss_pred EECCCCCEEEEEECCCeEEEEeCC-CCeEEE--eeeec-CCceEEEEEccCCCEEEE-EeCCCeEEEEECCC--cee--E
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYS-KEQLIC--GGKSY-YGALLCCAWSMDGKYILT-GGEDDLVQVWSMED--RKV--V 376 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~-~~~~~~--~~~~~-~~~v~~l~~spdg~~l~s-gs~dg~I~vwd~~~--~~~--~ 376 (548)
+|+|+|+++++...++.|++||+. ++++.. .+..+ ...+..++|+|||++|++ +..++.|.+|+++. ++. +
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 999999966666678899999998 554432 22222 236788999999996665 55688999999874 442 2
Q ss_pred EeccCCC------CCeEEEEEecCCCCCCCCCCccceeEEE-EEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 377 AWGEGHN------SWVSGVAFDSYWSQPNSDGTAETVMYRF-GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 377 ~~~~~h~------~~V~~v~~~p~~~~~~~dg~~~~~~~~l-~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
..+.... ..+..++|+| || ++| ++...++.|.+||+.....+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~sp-------dG------~~l~v~~~~~~~v~v~~~~~~g~~~~---------------- 277 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSH-------DG------HFLYVSNRGYNTLAVFAVTADGHLTL---------------- 277 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECT-------TS------CEEEEEEETTTEEEEEEECGGGCEEE----------------
T ss_pred eeeeecCCCCCCCCcceeEEECC-------CC------CEEEEEeCCCCEEEEEEECCCCcEEE----------------
Confidence 3332222 4588999999 99 445 6667789999999873221111
Q ss_pred CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEEC-CCeEEEEeCC
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCR-EGHIKIWMRP 513 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~-Dg~I~iW~~~ 513 (548)
+..+..+...+..++|+||+ |++++. ++.|.+|++.
T Consensus 278 ----------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 278 ----------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ----------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 11223345567899999984 766665 5999999654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=202.04 Aligned_cols=324 Identities=9% Similarity=0.071 Sum_probs=205.1
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCC---CceEEEecCCCCCCceEEEEEc---------CCcEEE
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNS---NPVCHAFDQDAKDGHDLLIGLN---------SGDVYS 202 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~~~~~l~~g~~---------dg~I~i 202 (548)
.++|+|+|++++.+.+..|++||+.++. ....+..+.. .+.+++|+|+ +++|+.++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~SpD---g~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQ--SYTILSNRTMKSVNASNYGLSPD---RQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCC--EEEEECHHHHHTTTCSEEEECTT---SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCc--EEEEEccccccccceeeEEECCC---CCeEEEEecCceeEEeecceEEEE
Confidence 6899999976666554499999999855 4444443322 4889999999 888988876 789999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+.+. + ...... ....+..++|+|||+ .|+.+. |+.|++||+..... ..... ..
T Consensus 95 ~d~~~g-----~-~~~~~~-------l~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~-~~l~~---~~------ 149 (719)
T 1z68_A 95 YDLSNG-----E-FVRGNE-------LPRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPP-FQITF---NG------ 149 (719)
T ss_dssp EETTTT-----E-ECCSSC-------CCSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCC-EECCC---CC------
T ss_pred EECCCC-----c-ccccee-------cCcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCc-EEEec---CC------
Confidence 998762 1 100000 124578899999999 677664 78999999876321 11000 00
Q ss_pred cCCCCCCCCeeEeeecCC---------CeEEEEECCCCCEEEEEECCC--------------------------------
Q 008939 283 HPRYSKSNPIARWHICQG---------SINSIAFSTDGTYLATVGRDG-------------------------------- 321 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~---------~v~~~~~sp~g~~l~s~~~dg-------------------------------- 321 (548)
.....+.+|.. ...+++|+|||++|++++.|.
T Consensus 150 -------~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~ 222 (719)
T 1z68_A 150 -------RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNP 222 (719)
T ss_dssp -------BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCC
T ss_pred -------CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCC
Confidence 00111222222 235899999999999988652
Q ss_pred --eEEEEeCCCCeEE---E-----eeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEE----CCCceeEEec----
Q 008939 322 --YLRVFDYSKEQLI---C-----GGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWS----MEDRKVVAWG---- 379 (548)
Q Consensus 322 --~v~vwd~~~~~~~---~-----~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd----~~~~~~~~~~---- 379 (548)
.|++||+.+++.+ . .+..|...+..++|+||++++++.... ..|.+|| +.++++...+
T Consensus 223 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 223 VVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 7899999987642 1 123577789999999998877774432 2488899 8888776666
Q ss_pred cCCCCCeE-----EEEEecCCCCCCCCCCccceeEEEE--EEeCCC--eEEEEECCCCeEEeeeecC-CCCCCceecCCC
Q 008939 380 EGHNSWVS-----GVAFDSYWSQPNSDGTAETVMYRFG--SVGQDT--RLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGS 449 (548)
Q Consensus 380 ~~h~~~V~-----~v~~~p~~~~~~~dg~~~~~~~~l~--s~~~Dg--~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 449 (548)
.+|..+|. .+.|+| || ..|+ +...++ .|.+||+..++.. .+... .....+.+. ++
T Consensus 303 ~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSY-------DA------ISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp ECSSSCSSSSSCCCCEECT-------TS------SCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEEEE-CS
T ss_pred ccCCceEccccCCccEECC-------CC------CeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEEEE-eC
Confidence 47888887 889999 98 3333 344555 6777888776632 23221 111222233 22
Q ss_pred CccccCCee-eeccc----CCCCceeecCC--CC-ceEEee----cCCCCeeEEEEeCCe--EE-EEECC--CeEEEEeC
Q 008939 450 QSAHWDNVC-PVGTL----QPAPSMRDVPK--LS-PLVAHR----VHTEPLSGLIFTQES--VL-TVCRE--GHIKIWMR 512 (548)
Q Consensus 450 ~~~~~d~~~-~~g~~----~~~~~~~d~~~--~~-~~~~~~----~h~~~V~~l~fspd~--l~-t~s~D--g~I~iW~~ 512 (548)
..+ ..... .....+|.+.. .. ....+. +|...+..+.|+|++ |+ +++.+ ..+.+||+
T Consensus 368 ------~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 368 ------DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp ------SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred ------CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 222 22222 35566776543 21 123333 266678899999974 43 44444 56888887
Q ss_pred CCCC
Q 008939 513 PGVA 516 (548)
Q Consensus 513 ~~~~ 516 (548)
.+++
T Consensus 442 ~~g~ 445 (719)
T 1z68_A 442 RTDQ 445 (719)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-19 Score=173.28 Aligned_cols=241 Identities=13% Similarity=0.038 Sum_probs=174.3
Q ss_pred CceeEEeCCCCCEEEEe-cCC-eEEEEEccCCCCCCeEEEecCC-----CCceEEEecCCCCCCceEEEEE---------
Q 008939 132 SMTNTNFDGKGTYIIFN-VGD-AIFISDLNSQDKDPIKSIHFSN-----SNPVCHAFDQDAKDGHDLLIGL--------- 195 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~-~~d-~v~vwd~~~~~~~~i~~~~~~~-----~~~~~~~~~p~~~~~~~l~~g~--------- 195 (548)
.+..++|+|+|++++++ ..+ .|++||+.++. .+..+.... ..+.+++|+|+ +..|+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~~~~~ 109 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPD---GKTLAIYESPVRLELTH 109 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTT---SSEEEEEEEEEEECSSC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCC---CCEEEEEeccccccccc
Confidence 36689999999876554 444 99999998754 666665421 26889999998 77888886
Q ss_pred ---cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 196 ---NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ---~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.++.|.+||+.+. +...... ....+.+++|+|++. .|+++ ++.|++||+.... .
T Consensus 110 ~~~~~~~i~v~d~~~~------~~~~~~~-------~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~-~------ 166 (337)
T 1pby_B 110 FEVQPTRVALYDAETL------SRRKAFE-------APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGT-L------ 166 (337)
T ss_dssp EEECCCEEEEEETTTT------EEEEEEE-------CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTE-E------
T ss_pred ccccCceEEEEECCCC------cEEEEEe-------CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCCc-E------
Confidence 5799999998751 2222111 234578899999998 56666 6899999997621 1
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-C-----------------------eEEEEeC
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-G-----------------------YLRVFDY 328 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g-----------------------~v~vwd~ 328 (548)
+..+..+.. ...+.|+|++++|+....+ + .|.+||+
T Consensus 167 -------------------~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 167 -------------------VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp -------------------EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred -------------------eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 111111110 0122677777755544322 2 4789999
Q ss_pred CCCeEE-EeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 329 SKEQLI-CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 329 ~~~~~~-~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
.+++.. ..+..+...+.+++|+||+++|+++ ++.|.+||+++++.+..+.. ...+.+++|+| ||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-------dg----- 291 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-------DG----- 291 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-------TS-----
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECC-------CC-----
Confidence 988764 2344566678899999999999888 79999999999988877763 45678999999 98
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+|++++.++.|.+||+.+++.+..+..
T Consensus 292 -~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 292 -STVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -CEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -CEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 6777788899999999999998887765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=188.64 Aligned_cols=219 Identities=12% Similarity=0.090 Sum_probs=158.2
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...++.+++++++. ++++++.|+ +++|+......... ......... ...+... ..+...|.+++|+|
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~-~~~~~~v~~l~~sp 102 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIV-------DKVQGLL-VPMKFPIHHLALSC 102 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEE-------ECCCCEE-ECCSSCEEEEEECT
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCccccc-------ccCcccc-ccCCCcccEEEEcC
Confidence 45689999999998 889998888 99998753110000 000000000 0011111 12457899999999
Q ss_pred CCCEEE----EEECCCeEEEEeCCCC--------e---EEEeeeecCCceEEEEEccC-CCEEEEEeCCCeEEEEECCCc
Q 008939 310 DGTYLA----TVGRDGYLRVFDYSKE--------Q---LICGGKSYYGALLCCAWSMD-GKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~----s~~~dg~v~vwd~~~~--------~---~~~~~~~~~~~v~~l~~spd-g~~l~sgs~dg~I~vwd~~~~ 373 (548)
++++|+ +++.|+.|+|||++++ + .+..+.+|...|.+++|+|+ +++|++++.|+.|++||++++
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 999999 7788999999998654 2 24456678999999999998 789999999999999999998
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccc
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAH 453 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (548)
..+....+|...|.+++|+| +| .+|++++.|+.|++||++ ++....+.....
T Consensus 183 ~~~~~~~~~~~~v~~v~wsp-------dg------~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-------------- 234 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSP-------KG------KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-------------- 234 (434)
T ss_dssp EEEEEEECGGGCEEEEEECT-------TS------SCEEEEETTSCEEEECTT-CCEEEEECCCTT--------------
T ss_pred cceeeccCCCCceeEEEEcC-------CC------CEEEEEcCCCcEEEEccC-CcccccccCCcc--------------
Confidence 77777777999999999999 98 789999999999999998 554443322000
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCe------EEEEeCCCC
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGH------IKIWMRPGV 515 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~------I~iW~~~~~ 515 (548)
....|...|.++.|+++. + +..+.||. +++|+++..
T Consensus 235 --------------------------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 --------------------------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --------------------------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --------------------------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 001244579999999974 2 33555543 899998765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=172.02 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=174.9
Q ss_pred eEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccc
Q 008939 135 NTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~ 211 (548)
.+++++++.+++++..+ .|++||+.++. .+..+.... ..+..++|+|+ +..+++. ..++.|++||+.+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~~~~~i~~~d~~t~--- 75 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPD---NRTAYVLNNHYGDIYGIDLDTC--- 75 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTT---SSEEEEEETTTTEEEEEETTTT---
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc--EEEEEecCCCCCCceeEECCC---CCEEEEEeCCCCcEEEEeCCCC---
Confidence 35677888888887766 99999998754 666666433 26889999998 6655544 46889999998751
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------------CcEEEEEcCCCCCCCCCccccccccee
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------------GNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
+ .................+.+++|+|+++ +|++++.+ +.|++||+.+... .
T Consensus 76 --~-~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~------------ 138 (349)
T 1jmx_B 76 --K-NTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-A------------ 138 (349)
T ss_dssp --E-EEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-B------------
T ss_pred --c-EEEEEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-c------------
Confidence 2 1111111000000123478999999999 77777755 8999999875211 0
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC------------------
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY------------------ 341 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------------------ 341 (548)
..+..+.. ...+.+++|+|+++ +++++ +.|.+||+.+++.+..+..+.
T Consensus 139 ----------~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 139 ----------KPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp ----------CCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred ----------ceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCC
Confidence 11122222 24588899999999 55554 349999999888766544221
Q ss_pred --------------------------------------------------CceEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 008939 342 --------------------------------------------------GALLCCAWSM-DGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 342 --------------------------------------------------~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~ 370 (548)
..+..++|+| ++++|+++ ++.|.+||+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~ 282 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL 282 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEET
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEEC
Confidence 1345677889 99999888 889999999
Q ss_pred CCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 371 EDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 371 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++++.+..+. ....+.+++|+| || .+|++++.++.|.+||+.+++.+..+..
T Consensus 283 ~~~~~~~~~~-~~~~~~~~~~s~-------dg------~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 283 KQRKLIKAAN-LDHTYYCVAFDK-------KG------DKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp TTTEEEEEEE-CSSCCCEEEECS-------SS------SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ccCeEEEEEc-CCCCccceEECC-------CC------CEEEEecCCCeEEEEeccccceeeeeec
Confidence 9998887776 334577999999 88 5677788899999999999999888765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-17 Score=163.87 Aligned_cols=276 Identities=13% Similarity=0.151 Sum_probs=173.5
Q ss_pred eEEEEEccCC--CCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----CcEEEEEeeecccccccceeeeeeeccC
Q 008939 152 AIFISDLNSQ--DKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GDVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 152 ~v~vwd~~~~--~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
.|++|+++.. ....+... +...+..++|+|+ +.+|+++..+ +.|.+|++.... ..+.......
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spd---g~~l~~~~~~~~~~~~v~~~~~~~~~----g~~~~~~~~~-- 96 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--EVANPSYLIPSAD---GKFVYSVNEFSKDQAAVSAFAFDKEK----GTLHLLNTQK-- 96 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTT---SSEEEEEECCSSTTCEEEEEEEETTT----TEEEEEEEEE--
T ss_pred CEEEEEEeCCCCCEEEeecc--cCCCCceEEECCC---CCEEEEEEccCCCCCcEEEEEEeCCC----CcEEEeeEec--
Confidence 8899987643 22223333 6778999999999 7788888886 799999987510 1111111100
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+......+++ +++.++++...++.|.+|++...+........... ... ...+ .+.+...+.++
T Consensus 97 --~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------~g~--~~~~---~~~~~~~~~~~ 160 (361)
T 3scy_A 97 --TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF-------KGS--GPDK---ERQTMPHLHCV 160 (361)
T ss_dssp --CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC-------CCC--CSCT---TTCSSCCEEEE
T ss_pred --cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc-------cCC--CCCc---cccCCCcceEE
Confidence 12445667777 67734444447899999999764432211110000 000 0000 00112457889
Q ss_pred EECCCCCEEEEEE-CCCeEEEEeCCCCe-------EE------EeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEEC
Q 008939 306 AFSTDGTYLATVG-RDGYLRVFDYSKEQ-------LI------CGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSM 370 (548)
Q Consensus 306 ~~sp~g~~l~s~~-~dg~v~vwd~~~~~-------~~------~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~ 370 (548)
+|+|+|++|+++. .++.|++|++.... +. ............++|+|||++|++++ .++.|.+||+
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 9999999776665 47899999887433 21 11222345678999999999887777 5899999999
Q ss_pred CCcee--EEec---cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-C-CCeEEEEECC--CCeEEeeeecCCCCC
Q 008939 371 EDRKV--VAWG---EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-Q-DTRLLLWDLE--MDEIVVPLRRGPLGG 441 (548)
Q Consensus 371 ~~~~~--~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~-Dg~i~lwd~~--~~~~~~~~~~~~~~~ 441 (548)
++++. +..+ ..+......++|+| || ++|+++. . ++.|.+|++. +++... +
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~sp-------dg------~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~------- 299 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSP-------DG------KYLYASNRLKADGVAIFKVDETNGTLTK-V------- 299 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECT-------TS------SEEEEEECSSSCEEEEEEECTTTCCEEE-E-------
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECC-------CC------CEEEEECCCCCCEEEEEEEcCCCCcEEE-e-------
Confidence 87754 2222 33445678999999 99 5665544 4 5899999986 333211 1
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEE-CCCeEEEEeCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVC-REGHIKIWMRP 513 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s-~Dg~I~iW~~~ 513 (548)
..+.. ...+..++|+||+ |++++ .++.|.+|++.
T Consensus 300 -------------------------------------~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 300 -------------------------------------GYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -------------------------------------EEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -------------------------------------eEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 11111 3457789999984 76666 67999997654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-19 Score=187.15 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=142.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
...+.+++|+|+ |..|+.++. +|.+.||++.. ........ .+...+..++|+|+ + ++++++.
T Consensus 21 ~~~~~~~~~~~D---G~~la~~s~~~g~~~lw~~~~------g~~~~lt~------~~~~~~~~~~~spd-~-~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVD---GDKLLVVGFSEGSVNAYLYDG------GETVKLNR------EPINSVLDPHYGVG-R-VILVRDV 83 (582)
T ss_dssp HSCEEEEEEEET---TTEEEEEEEETTEEEEEEEET------TEEEECCS------SCCSEECEECTTCS-E-EEEEEEC
T ss_pred ccchheeecCCC---CCeEEEEEccCCceeEEEEcC------CCcEeeec------ccccccccccCCCC-e-EEEEecc
Confidence 446899999999 778988877 99999999854 12211111 12357899999999 5 7777765
Q ss_pred ---CCcEEEEEcCC--CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEE
Q 008939 252 ---DGNLYVYEKSK--DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRV 325 (548)
Q Consensus 252 ---dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~v 325 (548)
+....+|.++. .+... .+. . ...+...+|+|+++. +++...++.+.+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~-~l~-------------------------~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l 136 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQ-RLE-------------------------A-VKPMRILSGVDTGEAVVFTGATEDRVAL 136 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCE-ECT-------------------------T-SCSBEEEEEEECSSCEEEEEECSSCEEE
T ss_pred CCCCcceEEEEEeccCCCccc-ccc-------------------------C-CCCceeeeeCCCCCeEEEEecCCCCceE
Confidence 55567766654 33211 000 0 023445678887753 333344455669
Q ss_pred EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCC
Q 008939 326 FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~d 401 (548)
||+.++++......+ . .+++|+|||++|++++.+ ..|++||+++++.. .+..|...+..++|+| |
T Consensus 137 ~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-------D 205 (582)
T 3o4h_A 137 YALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISP-------G 205 (582)
T ss_dssp EEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECT-------T
T ss_pred EEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECC-------C
Confidence 999988776554433 3 789999999999988777 78999999988765 5677889999999999 9
Q ss_pred CCccceeEEEEEEeCCC--eEEEEECCCCeEE
Q 008939 402 GTAETVMYRFGSVGQDT--RLLLWDLEMDEIV 431 (548)
Q Consensus 402 g~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~ 431 (548)
| +.|+++..++ .|++||+.+++..
T Consensus 206 G------~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 206 M------KVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp S------CEEEEEECSSCEEEEEECTTTCCEE
T ss_pred C------CEEEEccCCCeeEEEEEcCCCCcEE
Confidence 9 6888888888 8999999988776
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=166.11 Aligned_cols=271 Identities=10% Similarity=0.019 Sum_probs=175.0
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
.++++++ +.+++++..++.|++||+.+. +........ ....+..++|+|+++.++++...++.|++
T Consensus 4 g~~~~~~---~~~~v~~~~~~~v~~~d~~~~------~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 4 GPALKAG---HEYMIVTNYPNNLHVVDVASD------TVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCCTT---CEEEEEEETTTEEEEEETTTT------EEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccCC---CEEEEEeCCCCeEEEEECCCC------cEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence 3455555 778899999999999998761 222222110 11257899999999845566667899999
Q ss_pred EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec------CCCeEEEEECCCCCEEEEEECC-----------
Q 008939 258 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC------QGSINSIAFSTDGTYLATVGRD----------- 320 (548)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~sp~g~~l~s~~~d----------- 320 (548)
||+.+.. .+..+..+ ...+.+++|+|+|++|+++..+
T Consensus 70 ~d~~t~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 70 IDLDTCK--------------------------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp EETTTTE--------------------------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred EeCCCCc--------------------------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 9987521 11111111 1237789999999999998865
Q ss_pred -CeEEEEeCCCCeE---EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC------------
Q 008939 321 -GYLRVFDYSKEQL---ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS------------ 384 (548)
Q Consensus 321 -g~v~vwd~~~~~~---~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~------------ 384 (548)
+.|.+||+.+++. +..+. +...+.+++|+|||+ +++++. .|.+||+.+++.+..+..+..
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 8999999987543 33333 334688999999999 666544 499999999988776653320
Q ss_pred ------------CeEEEEEecCCCCCCCCCCc-----cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecC
Q 008939 385 ------------WVSGVAFDSYWSQPNSDGTA-----ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFST 447 (548)
Q Consensus 385 ------------~V~~v~~~p~~~~~~~dg~~-----~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 447 (548)
....+++++ |+.. .....++.....++.+.+|++.. .......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~sp 264 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFK-------DDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--------LTELYFTGLRSP 264 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC--------------CCCEEEEEEEEEETTTCCEEEEEEEE--------CSSCEEEEEECS
T ss_pred eecCCCcceeEEeeeeeeecC-------CCcCCccccccceeEEEEeccCCcEEeccccc--------CCCcceeeEecC
Confidence 234466654 3200 01112233455667888888743 112233445555
Q ss_pred -CCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCC
Q 008939 448 -GSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 448 -~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++. .+.++ +..+.+||+.+.+.+..+..+ ..+.+++|+|++ |++++.++.|++||+.+.+
T Consensus 265 ~dg~------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 265 KDPN------QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SCTT------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCC------EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 442 22222 566788888887776666533 457899999984 7778889999999987654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=187.24 Aligned_cols=300 Identities=11% Similarity=0.037 Sum_probs=193.8
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC---cceEEEEEecCCCcEEEEEeC--
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN---SRCTSVTWVPGGDGAFVVGHA-- 251 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~p~~~~~l~s~~~-- 251 (548)
..++|+|+ +. ++....++.|++||+.+. +. ..... .+. ..+.+++|+|||+ .|+.++.
T Consensus 19 ~~~~~s~d---g~-~~~~~~d~~i~~~~~~~g-----~~-~~~~~------~~~~~~~~~~~~~~SpDg~-~la~~~~~~ 81 (719)
T 1z68_A 19 FFPNWISG---QE-YLHQSADNNIVLYNIETG-----QS-YTILS------NRTMKSVNASNYGLSPDRQ-FVYLESDYS 81 (719)
T ss_dssp CCCEESSS---SE-EEEECTTSCEEEEESSSC-----CE-EEEEC------HHHHHTTTCSEEEECTTSS-EEEEEEEEE
T ss_pred CccEECCC---Ce-EEEEcCCCCEEEEEcCCC-----cE-EEEEc------cccccccceeeEEECCCCC-eEEEEecCc
Confidence 47789998 64 555567999999998762 11 11111 011 2488999999999 7777765
Q ss_pred -------CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 252 -------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 252 -------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
++.|++||+..... .... .+ ...+..++|||||+.|+++. |+.|+
T Consensus 82 ~~~~~s~~~~i~~~d~~~g~~-~~~~-----------------------~l---~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 82 KLWRYSYTATYYIYDLSNGEF-VRGN-----------------------EL---PRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp ECSSSCEEEEEEEEETTTTEE-CCSS-----------------------CC---CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eeEEeecceEEEEEECCCCcc-ccce-----------------------ec---CcccccceECCCCCEEEEEE-CCeEE
Confidence 78999999986321 0000 00 14578899999999999986 78999
Q ss_pred EEeCCCCeEEEee-eecCCce-----------------EEEEEccCCCEEEEEeCCC-----------------------
Q 008939 325 VFDYSKEQLICGG-KSYYGAL-----------------LCCAWSMDGKYILTGGEDD----------------------- 363 (548)
Q Consensus 325 vwd~~~~~~~~~~-~~~~~~v-----------------~~l~~spdg~~l~sgs~dg----------------------- 363 (548)
+||+.+++..... .++...+ .+++|+|||++|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 9999888765432 2222222 4899999999999987652
Q ss_pred -----------eEEEEECCCceeE--------EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----CeE
Q 008939 364 -----------LVQVWSMEDRKVV--------AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----TRL 420 (548)
Q Consensus 364 -----------~I~vwd~~~~~~~--------~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----g~i 420 (548)
.|++||+.+++.+ ..+.+|...+..++|+| |+ +++++.... ..|
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-------D~------~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-------DE------RVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-------SS------EEEEEEEESSTTEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-------CC------eEEEEEeccccCeEEE
Confidence 7899999987653 22346888999999999 98 666664432 358
Q ss_pred EEEE----CCCCeEEeeee----cC-CCCC-----CceecCCCCccccCCeeeecccC--CCCceeecCCCCceEEeecC
Q 008939 421 LLWD----LEMDEIVVPLR----RG-PLGG-----SPTFSTGSQSAHWDNVCPVGTLQ--PAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 421 ~lwd----~~~~~~~~~~~----~~-~~~~-----~~~~~~~~~~~~~d~~~~~g~~~--~~~~~~d~~~~~~~~~~~~h 484 (548)
.+|| +.++++...+. .. .... .+.|++++.... +.....+ ..+.+|++...+ ...+..+
T Consensus 281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~----~~~~~~~g~~~l~~~~~~~~~-~~~lt~~ 355 (719)
T 1z68_A 281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY----KIFSDKDGYKHIHYIKDTVEN-AIQITSG 355 (719)
T ss_dssp EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE----EEEECTTSCEEEEEESSCSTT-CEECSCS
T ss_pred EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE----EEEEccCCceEEEEEECCCCc-eEecccC
Confidence 9999 88887766552 21 2233 677888874211 0111112 235556665544 4455556
Q ss_pred CCCeeEEEEeCC-eEEEEEC-----CCeEEEEeCCC--CC--ccccC-----CCCc--EEEecCCCCceEee
Q 008939 485 TEPLSGLIFTQE-SVLTVCR-----EGHIKIWMRPG--VA--ESQSS-----SSET--VLSTSSKDKPLLSS 539 (548)
Q Consensus 485 ~~~V~~l~fspd-~l~t~s~-----Dg~I~iW~~~~--~~--~~~~~-----~~~~--v~~~s~d~~~l~s~ 539 (548)
...|..+.+..+ .|+..+. ++.+++|.++. +. ..... +... ..+++||+++|+..
T Consensus 356 ~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 356 KWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred ceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 666888777632 3554444 48899998754 21 11111 2233 34789999988754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=179.57 Aligned_cols=248 Identities=13% Similarity=0.175 Sum_probs=165.3
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCC---c--eEEEecCCCCCCceEEEEEcC---------
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSN---P--VCHAFDQDAKDGHDLLIGLNS--------- 197 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~---~--~~~~~~p~~~~~~~l~~g~~d--------- 197 (548)
....++|+|+|.+++.+ +++|++||+.++. ....+..+... + ..++|+|+ +..|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Spd---g~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGN--SSVFLENSTFDEFGHSINDYSISPD---GQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETTTCC--EEEEECTTTTTTCCSCCCEEEECTT---SSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECCCCc--eEEEEechhhhhhcccccceEECCC---CCEEEEEECCeeeEEEccc
Confidence 35579999999988886 5599999999865 44444444322 2 33788999 8889988876
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
+.+++||+.+. ++... ..+...+...+|+|||+ .|+.+ .|+.|++|++............
T Consensus 92 ~~~~~~d~~~~------~~~~l-------~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g----- 151 (740)
T 4a5s_A 92 ASYDIYDLNKR------QLITE-------ERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTG----- 151 (740)
T ss_dssp EEEEEEETTTT------EECCS-------SCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCC-----
T ss_pred eEEEEEECCCC------cEEEc-------ccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCC-----
Confidence 66789998862 11111 11466799999999999 66666 4689999998753211111100
Q ss_pred eeeeecCCCCCCCCeeEeeecC---------CCeEEEEECCCCCEEEEEECCC---------------------------
Q 008939 278 QFSVAHPRYSKSNPIARWHICQ---------GSINSIAFSTDGTYLATVGRDG--------------------------- 321 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~sp~g~~l~s~~~dg--------------------------- 321 (548)
.....+.++. +....+.|||||++||....|.
T Consensus 152 ------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 152 ------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp ------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 0001111111 2334689999999999875331
Q ss_pred ---------eEEEEeCCC---C---eEEEeee------ecCCceEEEEEccCCCEEEEEeC----CCeEEEEECCCce--
Q 008939 322 ---------YLRVFDYSK---E---QLICGGK------SYYGALLCCAWSMDGKYILTGGE----DDLVQVWSMEDRK-- 374 (548)
Q Consensus 322 ---------~v~vwd~~~---~---~~~~~~~------~~~~~v~~l~~spdg~~l~sgs~----dg~I~vwd~~~~~-- 374 (548)
.|++||+.+ + +.. .+. +|...+..++|+|||++++.... +..|.+||+.+++
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 588899988 7 333 232 26778999999999997665432 3479999999886
Q ss_pred --eEE--ec--cCCCCCeE-----EEEEecCCCCCCCCCCccceeEEEE-EEeC-C--CeEEEEECCCCeEE
Q 008939 375 --VVA--WG--EGHNSWVS-----GVAFDSYWSQPNSDGTAETVMYRFG-SVGQ-D--TRLLLWDLEMDEIV 431 (548)
Q Consensus 375 --~~~--~~--~~h~~~V~-----~v~~~p~~~~~~~dg~~~~~~~~l~-s~~~-D--g~i~lwd~~~~~~~ 431 (548)
+.. .+ ..|..+|. .+.|+| || +.|+ ..+. + ..|.+||+..+++.
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-------DG------~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTL-------DG------NSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECT-------TS------SEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcC-------CC------CEEEEEEEcCCCceEEEEEECCCCceE
Confidence 322 22 45777765 788999 99 4555 5553 3 46888888876544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-16 Score=157.19 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=171.7
Q ss_pred eEEEEEccCC--CCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQ--DKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~--~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|++|+++.. ....+..... ....+..++|+|+ +.+|+++..+ .|.+|++... ++ +........
T Consensus 15 ~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd---g~~l~~~~~~-~v~~~~~~~~----g~-~~~~~~~~~---- 81 (365)
T 1jof_A 15 AIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE---RKNIYGAAMK-KWSSFAVKSP----TE-IVHEASHPI---- 81 (365)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT---SSEEEEEEBT-EEEEEEEEET----TE-EEEEEEEEC----
T ss_pred cEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC---CCEEEEEccc-eEEEEEECCC----CC-EEEeeEeec----
Confidence 6777776532 2112222211 2347889999999 7788888887 9999998621 11 111111100
Q ss_pred cCcceEEEEEecCCCc-EEEEEe-------------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 229 NNSRCTSVTWVPGGDG-AFVVGH-------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~-~l~s~~-------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
.+.+.+++|+|+++. +++++. .+|.+.+|+++..+..... +..
T Consensus 82 -~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~----------------------~~~ 138 (365)
T 1jof_A 82 -GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN----------------------VQN 138 (365)
T ss_dssp -CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE----------------------EEE
T ss_pred -CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce----------------------Eee
Confidence 122456899999983 234553 6899999999753321100 111
Q ss_pred ee-ecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCC-CCeEE--Eeee--ecCCceEEEEEccCCCEEEEEeC-CCeEE
Q 008939 295 WH-ICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYS-KEQLI--CGGK--SYYGALLCCAWSMDGKYILTGGE-DDLVQ 366 (548)
Q Consensus 295 ~~-~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~-~~~~~--~~~~--~~~~~v~~l~~spdg~~l~sgs~-dg~I~ 366 (548)
+. .+...+.+++|+|||++|+++.. ++.|++||+. ++++. ..+. .+...+..++|+|||++|+++++ ++.|.
T Consensus 139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC 218 (365)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE
Confidence 11 13467899999999998887764 6799999998 77653 2333 23567899999999999888775 68999
Q ss_pred EEECC--CceeE------Eecc----CCCC------CeEEEE-EecCCCCCCCCCCccceeEEEEEEeC-CC-----eEE
Q 008939 367 VWSME--DRKVV------AWGE----GHNS------WVSGVA-FDSYWSQPNSDGTAETVMYRFGSVGQ-DT-----RLL 421 (548)
Q Consensus 367 vwd~~--~~~~~------~~~~----~h~~------~V~~v~-~~p~~~~~~~dg~~~~~~~~l~s~~~-Dg-----~i~ 421 (548)
+|+++ +++.. ..+. +|.. .+..++ |+| || ++|+++.. +. .|.
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-------dG------~~l~v~~~~~~~~~~~~i~ 285 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-------SG------KYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-------TS------SEEEEEEEESSTTSCCEEE
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-------CC------CEEEEECCCCCCCCCCeEE
Confidence 99875 45432 1222 1222 588999 999 99 55555543 23 899
Q ss_pred EEECC-CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeC---C-
Q 008939 422 LWDLE-MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ---E- 496 (548)
Q Consensus 422 lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp---d- 496 (548)
+|++. +++....... ...+...+..++|+| |
T Consensus 286 v~~~~~~g~~~~~~~~--------------------------------------------~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 286 GFKLRDCGSIEKQLFL--------------------------------------------SPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEECTTSCEEEEEEE--------------------------------------------EECSSCCTTCCCEEECTTCT
T ss_pred EEEECCCCCEEEeeee--------------------------------------------eecCCCCcccceecCCCcCC
Confidence 99996 4543321110 111233456788888 5
Q ss_pred -eEEEEEC-CCeEEEEeCCCC
Q 008939 497 -SVLTVCR-EGHIKIWMRPGV 515 (548)
Q Consensus 497 -~l~t~s~-Dg~I~iW~~~~~ 515 (548)
.|++++. ++.|++|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 3777775 499999998764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=159.22 Aligned_cols=250 Identities=11% Similarity=0.078 Sum_probs=164.7
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEcc-CCCCCCeEEEec-CCCCceEEEecCCCCCCce--EEEEE-----------
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLN-SQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHD--LLIGL----------- 195 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~-~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~--l~~g~----------- 195 (548)
..+..++|+|+|++++++..+.|.+|++. ++. .+..... ....+.+++|+|+ ++. ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~--~~~~~~~~~~g~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTE--IVHEASHPIGGHPRANDADTN---TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTE--EEEEEEEECCSSGGGGCTTSC---CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCC--EEEeeEeecCCCCccEEECCC---CCEEEEEEecCCcceecccee
Confidence 35668999999998887666699999997 543 3222221 1134777899998 774 44442
Q ss_pred --cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCccc
Q 008939 196 --NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 --~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.+|.+.+|++... ++ +......... .+...+.+++|+|+++ +|+++. .++.|++||++..+..
T Consensus 115 ~~~~g~v~v~~~~~~----g~-~~~~~~~~~~--~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~------ 180 (365)
T 1jof_A 115 YKFAGYGNVFSVSET----GK-LEKNVQNYEY--QENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEV------ 180 (365)
T ss_dssp SSSCCEEEEEEECTT----CC-EEEEEEEEEC--CTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCE------
T ss_pred ecCCceEEEEccCCC----Cc-CcceEeeEEe--CCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCE------
Confidence 6889999998641 11 1111110000 1345789999999998 666655 4689999999721211
Q ss_pred ccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCC--CCeEEE---eee------
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYS--KEQLIC---GGK------ 338 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~--~~~~~~---~~~------ 338 (548)
..+..+. .|...+..++|+|||++|+++.. ++.|.+|++. ++++.. .+.
T Consensus 181 -----------------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 181 -----------------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp -----------------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred -----------------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 0011122 12456899999999999988775 6899999875 565421 121
Q ss_pred -ecCC------ceEEEE-EccCCCEEEEEeCC-C-----eEEEEECC-CceeEE---eccCCCCCeEEEEEecCCCCCCC
Q 008939 339 -SYYG------ALLCCA-WSMDGKYILTGGED-D-----LVQVWSME-DRKVVA---WGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 339 -~~~~------~v~~l~-~spdg~~l~sgs~d-g-----~I~vwd~~-~~~~~~---~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+|.. .+..++ |+|||++|+++..+ + .|.+|+++ +++... .+..+...+..++|+|
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp------- 316 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP------- 316 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE-------
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC-------
Confidence 1122 488999 99999988876643 2 89999996 565443 2333555567788988
Q ss_pred C---CCccceeEEEEEEeC-CCeEEEEECCCCe
Q 008939 401 D---GTAETVMYRFGSVGQ-DTRLLLWDLEMDE 429 (548)
Q Consensus 401 d---g~~~~~~~~l~s~~~-Dg~i~lwd~~~~~ 429 (548)
+ | .+|++++. ++.|.+|++....
T Consensus 317 ~~~dg------~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 317 CPWSD------EWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTCT------TEEEEECSSSCEEEEEEEETTE
T ss_pred CCcCC------CEEEEEEcCCCeEEEEEEchhh
Confidence 4 5 57777776 4899999998763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-17 Score=162.79 Aligned_cols=238 Identities=13% Similarity=0.066 Sum_probs=153.6
Q ss_pred EEeCCCCCEEEEecC-C---eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 136 TNFDGKGTYIIFNVG-D---AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~-d---~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
.+|+|||++|++... + .|++||+.++. .......+...+...+|+|+ +..|+.+..++.|++||+.+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~spd---g~~l~~~~~~~~l~~~d~~~g--- 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--ATQLTEGRGDNTFGGFLSPD---DDALFYVKDGRNLMRVDLATL--- 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--EEECCCSSCBCSSSCEECTT---SSEEEEEETTTEEEEEETTTC---
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--eEEeeeCCCCCccceEEcCC---CCEEEEEeCCCeEEEEECCCC---
Confidence 789999999998776 3 48888988644 33333333334456789999 888999999999999998762
Q ss_pred cccceeeeeeeccCCcccCcceEEEE--EecCCCcEEEEE----------------------eCCCcEEEEEcCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVT--WVPGGDGAFVVG----------------------HADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~--~~p~~~~~l~s~----------------------~~dg~v~vwd~~~~~~~~ 267 (548)
+... ... .+...+.... ++|++. +++.. ..+..|++||+.+.
T Consensus 113 --~~~~-~~~------~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---- 178 (388)
T 3pe7_A 113 --EENV-VYQ------VPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---- 178 (388)
T ss_dssp --CEEE-EEE------CCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC----
T ss_pred --ccee-eee------chhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCC----
Confidence 1111 111 1233343333 478888 55532 23467888888752
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECC------CeEEEEeCCCCeEEEeeeec
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRD------GYLRVFDYSKEQLICGGKSY 340 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~ 340 (548)
....+..+...+..++|+| ||+.|+.+..+ ..|.++|+..++... +..+
T Consensus 179 -----------------------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~ 234 (388)
T 3pe7_A 179 -----------------------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTH 234 (388)
T ss_dssp -----------------------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCC
T ss_pred -----------------------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeC
Confidence 1233334456789999999 99999888764 378888887655433 3333
Q ss_pred C--CceEEEEEccCCCEEEEEeC-CC----eEEEEECCCcee--EEeccCCCCC---eEEEEEecCCCCCCCCCCcccee
Q 008939 341 Y--GALLCCAWSMDGKYILTGGE-DD----LVQVWSMEDRKV--VAWGEGHNSW---VSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 341 ~--~~v~~l~~spdg~~l~sgs~-dg----~I~vwd~~~~~~--~~~~~~h~~~---V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
. ..+..++|+|||+.|+..+. ++ .|.+||+++++. +..+.++... ...+.|+| ||
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp-------dg------ 301 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG-------DG------ 301 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE-------EE------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc-------CC------
Confidence 3 25778899999997765443 22 399999998864 3333331110 11236888 88
Q ss_pred EEEEEE---------eCCCeEEEEECCCCeEEe
Q 008939 409 YRFGSV---------GQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 409 ~~l~s~---------~~Dg~i~lwd~~~~~~~~ 432 (548)
+.|+.. ..+..|.+||+.+++...
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEEEE
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 444432 456789999999887643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-15 Score=166.20 Aligned_cols=261 Identities=13% Similarity=0.034 Sum_probs=168.6
Q ss_pred CcccccccCCCCCCceeEEeCCCCCEEEEe--cCC-eEEEEEccCCCCCCeEEEecCCCCce---------EEEec--CC
Q 008939 119 SRIGSLGASSSSTSMTNTNFDGKGTYIIFN--VGD-AIFISDLNSQDKDPIKSIHFSNSNPV---------CHAFD--QD 184 (548)
Q Consensus 119 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~~~--~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~---------~~~~~--p~ 184 (548)
++++.-...+|...+..++|++++.+++.. ..+ ...||....+ .....+..++..+. ...|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 12 SPIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp CSCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred CCCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecC
Confidence 444443445677788899999876555554 334 7889986432 35566665655555 55565 87
Q ss_pred CCCCce-EEEEEc-CCcEEEEEee----ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------
Q 008939 185 AKDGHD-LLIGLN-SGDVYSVSLR----QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------ 252 (548)
Q Consensus 185 ~~~~~~-l~~g~~-dg~I~iwdl~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------ 252 (548)
+.. |+.... +..|+++++. .. .+.+.. .....+...+.+++|+||++ .|+.++.|
T Consensus 90 ---g~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~-----~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 90 ---GGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTP-----VSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGP 156 (662)
T ss_dssp ---SSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSC-----CCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSST
T ss_pred ---CCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccC-----CccCCCCccccCcEECCCCC-EEEEEEecccCCCC
Confidence 667 665543 4566666654 10 111110 00001456788999999999 77777766
Q ss_pred ----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCC------
Q 008939 253 ----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDG------ 321 (548)
Q Consensus 253 ----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg------ 321 (548)
..|++||+........ .....+. .+...+..++|+|||++|+.++.++
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADR---------------------SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCG---------------------GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred CCceeEEEEEECCCCccccC---------------------CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 5899999875100000 0011111 2235677889999999999887553
Q ss_pred --eEEEEeCC-CC---eEEEeeeecCCceEEEEEccCCCEEEEEeCCC--eEEEEECCCceeEEeccCCCCC--------
Q 008939 322 --YLRVFDYS-KE---QLICGGKSYYGALLCCAWSMDGKYILTGGEDD--LVQVWSMEDRKVVAWGEGHNSW-------- 385 (548)
Q Consensus 322 --~v~vwd~~-~~---~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg--~I~vwd~~~~~~~~~~~~h~~~-------- 385 (548)
.|++||+. ++ +.......+...+..++|+|||++++++..++ .|.+||+.+++.......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc
Confidence 79999998 57 44444455577899999999999888888888 6777777677665544433332
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE--ECCCCe
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW--DLEMDE 429 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw--d~~~~~ 429 (548)
+..++|+| ++ .+++++.. +.++|| |+..++
T Consensus 296 ~~~~~~~~-------~~------~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 296 MRWFAPLA-------NG------LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CCSEEECT-------TS------CEEEEEBS-SSCEEEEEETTTTE
T ss_pred CceEeEeC-------CC------EEEEEEEc-CccEEEEEECCCCc
Confidence 56788888 87 68888888 999999 555544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-16 Score=156.53 Aligned_cols=216 Identities=14% Similarity=0.041 Sum_probs=142.9
Q ss_pred EccCCCCCCeEEEecCCCCceE-----EEecCCCCCCceEEEEEc-CCc--EEEEEeeecccccccceeeeeeeccCCcc
Q 008939 157 DLNSQDKDPIKSIHFSNSNPVC-----HAFDQDAKDGHDLLIGLN-SGD--VYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 157 d~~~~~~~~i~~~~~~~~~~~~-----~~~~p~~~~~~~l~~g~~-dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
|..++. .+..+..++..... .+|+|+ +..|+..+. +|. |++||+... ....... .
T Consensus 16 ~~~~g~--~~~~lt~~~~~~~~~~~~~~~~SpD---g~~l~~~~~~~g~~~l~~~d~~~g------~~~~lt~------~ 78 (388)
T 3pe7_A 16 DASTGA--QVTRLTPPDVTCHRNYFYQKCFTRD---GSKLLFGGAFDGPWNYYLLDLNTQ------VATQLTE------G 78 (388)
T ss_dssp CTTTCC--EEEECSCTTSCEECCCTTSCCBCTT---SCEEEEEECTTSSCEEEEEETTTC------EEEECCC------S
T ss_pred cCCCCc--ceEEecCCcccccchhhcCccCCCC---CCEEEEEEcCCCCceEEEEeCCCC------ceEEeee------C
Confidence 444433 56666655544444 789999 778888887 674 778887651 1111111 1
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE--E
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI--A 306 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~ 306 (548)
+...+..+.|+|+++ .|+.+..++.|++||+.... ....+..+...+... .
T Consensus 79 ~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~--------------------------~~~~~~~~~~~~~~~~~~ 131 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLE--------------------------ENVVYQVPAEWVGYGTWV 131 (388)
T ss_dssp SCBCSSSCEECTTSS-EEEEEETTTEEEEEETTTCC--------------------------EEEEEECCTTEEEEEEEE
T ss_pred CCCCccceEEcCCCC-EEEEEeCCCeEEEEECCCCc--------------------------ceeeeechhhccccccee
Confidence 334445678999999 88888888999999998621 122233333444333 3
Q ss_pred ECCCCCEEEEEE----------------------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCC-
Q 008939 307 FSTDGTYLATVG----------------------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGED- 362 (548)
Q Consensus 307 ~sp~g~~l~s~~----------------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d- 362 (548)
++|++++++... .+..|.+||+.+++... +..+...+..++|+| ||+.|+....+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~ 210 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGP 210 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecC
Confidence 489999887532 34679999999887554 344667789999999 99988877753
Q ss_pred -----CeEEEEECCCceeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-C----CeEEEEECCCCeE
Q 008939 363 -----DLVQVWSMEDRKVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ-D----TRLLLWDLEMDEI 430 (548)
Q Consensus 363 -----g~I~vwd~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~-D----g~i~lwd~~~~~~ 430 (548)
..|.++|+..++.. .+..+. ..+..+.|+| || +.|+..+. + ..|.+||+.+++.
T Consensus 211 ~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVP-------DG------SALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECT-------TS------SCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECC-------CC------CEEEEEecCCCCCcceEEEEecCCCce
Confidence 37888888765543 333343 3578899999 99 44544332 2 2399999998875
Q ss_pred E
Q 008939 431 V 431 (548)
Q Consensus 431 ~ 431 (548)
.
T Consensus 277 ~ 277 (388)
T 3pe7_A 277 R 277 (388)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=148.79 Aligned_cols=257 Identities=14% Similarity=0.163 Sum_probs=177.2
Q ss_pred CCCceeEEeCCCCCEEEEecCC-------------------------eEEEEEccCCCCCCeEEEe-cCCCCceEEEecC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-------------------------AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQ 183 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-------------------------~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p 183 (548)
-+.+..++++++|+++++...+ .|++||..++. .+.... ..-..+..++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCCccCCceEEEECC
Confidence 3567889999999999887766 59999988654 443332 1234789999999
Q ss_pred CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc--CCcccCcceEEEEEec-CCCcEEEEEe-CCCcEEEEE
Q 008939 184 DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK--DGSVNNSRCTSVTWVP-GGDGAFVVGH-ADGNLYVYE 259 (548)
Q Consensus 184 ~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~p-~~~~~l~s~~-~dg~v~vwd 259 (548)
+ +.++++...++.|++||..... ..+........ ....+......|+++| ++. ++++.+ .++.|++||
T Consensus 101 ~---g~l~v~d~~~~~v~~~~~~g~~----~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 101 D---GNYWVTDVALHQVFKLDPHSKE----GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS 172 (329)
T ss_dssp T---SCEEEEETTTTEEEEECTTCSS----CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC
T ss_pred C---CCEEEEECCCCEEEEEeCCCCe----EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc
Confidence 8 7777777778999999976410 01111100000 0012345789999999 666 777775 689999999
Q ss_pred cCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 260 KSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
.+ +.....+....... ... ..+-.....++++|+ +.++++...++.|++||..+++.+..+.
T Consensus 173 ~~--g~~~~~~~~~g~~~----------~~~-----~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 173 PS--GKFVTQWGEESSGS----------SPR-----PGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp TT--SCEEEEECEECCSS----------SCC-----TTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CC--CCEEEEeccCCCCC----------CCC-----CcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 43 22111111000000 000 001134789999998 7777777788999999999898887764
Q ss_pred --ecCCceEEEEEccCCCEEEE-------EeCCCeEEEEECCCceeEEec---cCCCCCeEEEEEecCCCCCCCCCCccc
Q 008939 339 --SYYGALLCCAWSMDGKYILT-------GGEDDLVQVWSMEDRKVVAWG---EGHNSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 339 --~~~~~v~~l~~spdg~~l~s-------gs~dg~I~vwd~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
.+...+..++++| +..+++ ...+..|++||+.+++.+..+ .++...+..|+++| ||
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-------dG---- 303 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-------DG---- 303 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-------TS----
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-------CC----
Confidence 3556788999999 433333 334558999999999988887 36778899999999 99
Q ss_pred eeEEEEEEeCCCeEEEEECCC
Q 008939 407 VMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 407 ~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++++...++.|++|++..
T Consensus 304 --~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 --TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --EEEEEESSSCCEEEEEEEE
T ss_pred --CEEEEECCCCEEEEEeCCc
Confidence 7899999999999999864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-16 Score=168.65 Aligned_cols=201 Identities=10% Similarity=0.016 Sum_probs=137.2
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
....++|+|+ +.+|+++ +|.|++||+.+. +.. .... ............++.|+||++ .|+.++.+
T Consensus 18 ~~~~~~w~~d---g~~~~~~--~~~i~~~~~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~ 84 (740)
T 4a5s_A 18 KLYSLRWISD---HEYLYKQ--ENNILVFNAEYG-----NSS-VFLE-NSTFDEFGHSINDYSISPDGQ-FILLEYNYVK 84 (740)
T ss_dssp CCCCEEECSS---SEEEEEE--TTEEEEEETTTC-----CEE-EEEC-TTTTTTCCSCCCEEEECTTSS-EEEEEEEEEE
T ss_pred cccccEECCC---CcEEEEc--CCcEEEEECCCC-----ceE-EEEe-chhhhhhcccccceEECCCCC-EEEEEECCee
Confidence 4568899998 6677775 999999998762 111 1111 001111222345689999999 77777765
Q ss_pred -------CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE
Q 008939 253 -------GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV 325 (548)
Q Consensus 253 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v 325 (548)
+.+++||+.++. +..+..|.+.+...+|||||+.||.+. |+.|++
T Consensus 85 ~~r~~~~~~~~~~d~~~~~---------------------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~ 136 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQ---------------------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV 136 (740)
T ss_dssp CSSSCEEEEEEEEETTTTE---------------------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred eEEEccceEEEEEECCCCc---------------------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEE
Confidence 667899998631 111223446789999999999999885 789999
Q ss_pred EeCCCCeEEEe-eeecCCce-----------------EEEEEccCCCEEEEEeCCC------------------------
Q 008939 326 FDYSKEQLICG-GKSYYGAL-----------------LCCAWSMDGKYILTGGEDD------------------------ 363 (548)
Q Consensus 326 wd~~~~~~~~~-~~~~~~~v-----------------~~l~~spdg~~l~sgs~dg------------------------ 363 (548)
||+.+++.... ..++...+ ..+.|||||++||..+.|.
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99988765432 22222222 3589999999999875321
Q ss_pred ------------eEEEEECCC---c---eeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe----C
Q 008939 364 ------------LVQVWSMED---R---KVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG----Q 416 (548)
Q Consensus 364 ------------~I~vwd~~~---~---~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----~ 416 (548)
.|++||+.+ + +...... +|...+..++|+| || ++++... .
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-------dg------~~~~~~~~r~~~ 283 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-------QE------RISLQWLRRIQN 283 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-------TT------EEEEEEEESSTT
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-------CC------eEEEEEeCCCCC
Confidence 588899998 7 3332222 3888899999999 99 5555443 2
Q ss_pred CCeEEEEECCCCe
Q 008939 417 DTRLLLWDLEMDE 429 (548)
Q Consensus 417 Dg~i~lwd~~~~~ 429 (548)
+..|.+||+.+++
T Consensus 284 ~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 284 YSVMDICDYDESS 296 (740)
T ss_dssp EEEEEEEEEETTT
T ss_pred EEEEEEEECCCCc
Confidence 3479999999886
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-14 Score=140.62 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=167.1
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec------CCCCceEEEec-CCCCCCceEEEEEc-CCc
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFD-QDAKDGHDLLIGLN-SGD 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~-p~~~~~~~l~~g~~-dg~ 199 (548)
+-..+..++++++|.++++...+ .|++||.+. +.+..+.. +...+..++++ ++ +.++++... ++.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~---g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNS---GDIIVTERSPTHQ 101 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTT---TEEEEEECGGGCE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCC---CeEEEEcCCCCCE
Confidence 44567889999999988886655 999999873 24444432 12468899995 44 444444433 889
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||... +.+. ... ..+...+.++++.|++. ++++...++.|++||... ..
T Consensus 102 i~~~d~~g------~~~~-~~~-----~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~------------- 153 (286)
T 1q7f_A 102 IQIYNQYG------QFVR-KFG-----ATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NV------------- 153 (286)
T ss_dssp EEEECTTS------CEEE-EEC-----TTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CE-------------
T ss_pred EEEECCCC------cEEE-Eec-----CccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC--CE-------------
Confidence 99998432 2111 110 01345689999999998 777777889999998642 11
Q ss_pred eeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeec--CCceEEEEEccCCCE
Q 008939 280 SVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY--YGALLCCAWSMDGKY 355 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~l~~spdg~~ 355 (548)
+..+. .+...+.+++++++++++++...++.|++||.. ++.+..+..+ ...+..++++++|++
T Consensus 154 ------------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l 220 (286)
T 1q7f_A 154 ------------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEI 220 (286)
T ss_dssp ------------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCE
T ss_pred ------------EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCE
Confidence 11111 122468899999999977777778999999985 5555555433 357889999999998
Q ss_pred EEEEeCCC-eEEEEECCCceeEEeccCCC--CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 356 ILTGGEDD-LVQVWSMEDRKVVAWGEGHN--SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 356 l~sgs~dg-~I~vwd~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++...++ .|.+||.. ++.+..+..+. ..+.+++++| +| +++++ +.|+.|++|++...
T Consensus 221 ~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~-------~g------~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMD-------DG------SVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEET-------TT------EEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECC-------CC------cEEEE-CCCCeEEEEEcccc
Confidence 88887776 99999964 56666555443 3478999999 99 66666 67999999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-14 Score=135.58 Aligned_cols=242 Identities=11% Similarity=0.134 Sum_probs=166.0
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEe-cCCCcEEEEEeC-
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWV-PGGDGAFVVGHA- 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-p~~~~~l~s~~~- 251 (548)
..+.+++++++ +.++++...++.|.+||... +.+.. .........+...+.++++. +++. ++++...
T Consensus 30 ~~p~~v~~~~~---g~l~v~~~~~~~i~~~d~~g------~~~~~-~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~ 98 (286)
T 1q7f_A 30 TEPSGVAVNAQ---NDIIVADTNNHRIQIFDKEG------RFKFQ-FGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSP 98 (286)
T ss_dssp SCEEEEEECTT---CCEEEEEGGGTEEEEECTTS------CEEEE-ECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGG
T ss_pred CCCceEEECCC---CCEEEEECCCCEEEEECCCC------cEEEE-ecccCCCcccccCceEEEEEcCCCe-EEEEcCCC
Confidence 46889999988 66777777889999998653 11111 11001111244578999995 5554 5555533
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
++.|++||.. +.. +..+. .+...+.+++++++++++++...++.|.+||..
T Consensus 99 ~~~i~~~d~~--g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 150 (286)
T 1q7f_A 99 THQIQIYNQY--GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN- 150 (286)
T ss_dssp GCEEEEECTT--SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCEEEEECCC--CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence 7899999943 211 11111 122468899999999988777778999999965
Q ss_pred CeEEEeee--ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--CCCeEEEEEecCCCCCCCCCCccc
Q 008939 331 EQLICGGK--SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--NSWVSGVAFDSYWSQPNSDGTAET 406 (548)
Q Consensus 331 ~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~dg~~~~ 406 (548)
++.+..+. .+...+..++++++|+++++...++.|++||.. ++.+..+..+ ...+..|+++| +|
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-------~G---- 218 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-------NG---- 218 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-------TC----
T ss_pred CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-------CC----
Confidence 55555543 344568999999999988888889999999985 5555555433 46789999999 88
Q ss_pred eeEEEEEEeCCC-eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 407 VMYRFGSVGQDT-RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 407 ~~~~l~s~~~Dg-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
+++++...++ .|.+||. .++.+..+.. ....
T Consensus 219 --~l~v~~~~~~~~i~~~~~-~g~~~~~~~~---------------------------------------------~~~~ 250 (286)
T 1q7f_A 219 --EILIADNHNNFNLTIFTQ-DGQLISALES---------------------------------------------KVKH 250 (286)
T ss_dssp --CEEEEECSSSCEEEEECT-TSCEEEEEEE---------------------------------------------SSCC
T ss_pred --CEEEEeCCCCEEEEEECC-CCCEEEEEcc---------------------------------------------cCCC
Confidence 6777777776 9999995 4554443322 0112
Q ss_pred CCeeEEEEeCCe-EEEEECCCeEEEEeCCC
Q 008939 486 EPLSGLIFTQES-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 486 ~~V~~l~fspd~-l~t~s~Dg~I~iW~~~~ 514 (548)
..+.+++|+|++ |+.++.|+.|++|++..
T Consensus 251 ~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 346789999984 55457899999999754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=144.56 Aligned_cols=260 Identities=14% Similarity=0.105 Sum_probs=176.9
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC------CCCceEEEecCCCCCCceEEEEEc-
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS------NSNPVCHAFDQDAKDGHDLLIGLN- 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~------~~~~~~~~~~p~~~~~~~l~~g~~- 196 (548)
.++|+|||+++.++. .+.|.+||+.+. +.+..+... ...+..++|+|+ +++|+++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spd---g~~l~v~n~~ 128 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTD---GKFIVLQNAS 128 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTT---SSEEEEEEES
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCC---CCEEEEECCC
Confidence 799999999998864 237999999874 477777653 356889999999 888988875
Q ss_pred -CCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 -SGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 -dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.+||+.+. ++... .. ......+.+.|++...+++.+.||.+.+|++...+.......
T Consensus 129 ~~~~v~v~d~~~~------~~~~~~i~--------~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~--- 191 (361)
T 2oiz_A 129 PATSIGIVDVAKG------DYVEDVTA--------AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR--- 191 (361)
T ss_dssp SSEEEEEEETTTT------EEEEEEGG--------GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE---
T ss_pred CCCeEEEEECCCC------cEEEEEec--------CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc---
Confidence 578999999862 22221 11 122334667888755888899999999999865332110000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE--EEeeee------cC----C
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGGKS------YY----G 342 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~--~~~~~~------~~----~ 342 (548)
. ...+..+..++ .+.+++++..++..+.++.|.++|+..... +..+.. +. .
T Consensus 192 ~----------------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 192 S----------------KQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp C----------------CCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred c----------------cceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 0 00111111221 233456777777788899999999975532 222110 00 1
Q ss_pred ceEEEEEccCCCEEEEEeC-----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 343 ALLCCAWSMDGKYILTGGE-----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 343 ~v~~l~~spdg~~l~sgs~-----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
...-++++|+++.++++.. .+.|.+||+++++.+.++..+. +.+|+|+| || ++|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-------dg------~~l 319 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-------QR------NLM 319 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-------TT------TEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-------CC------CEE
Confidence 1223789999888777643 3589999999999999998776 99999999 99 577
Q ss_pred EEEeCCCeEEEEECCCC--eEEeee-ecCCCCCCceecCCC
Q 008939 412 GSVGQDTRLLLWDLEMD--EIVVPL-RRGPLGGSPTFSTGS 449 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~--~~~~~~-~~~~~~~~~~~~~~~ 449 (548)
++++. +.|.+||+.++ +.+..+ ........+.+++++
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 77766 99999999999 888876 333334455666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-15 Score=150.26 Aligned_cols=234 Identities=15% Similarity=0.023 Sum_probs=137.9
Q ss_pred EEccCCCCCCeEEEecCCCC-----ceEEEecCCCCCCceEEEEEcC-C--cEEEEEeeecccccccceeeeeeeccCCc
Q 008939 156 SDLNSQDKDPIKSIHFSNSN-----PVCHAFDQDAKDGHDLLIGLNS-G--DVYSVSLRQQLQDVGKKLVGAHHYNKDGS 227 (548)
Q Consensus 156 wd~~~~~~~~i~~~~~~~~~-----~~~~~~~p~~~~~~~l~~g~~d-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 227 (548)
.|..++. .+..+..+... +..++|+|+ +..|+..... + .|++||+... + ......
T Consensus 15 ~d~~~g~--~~~~l~~~~~~~~~~~~~~~~~Spd---G~~l~~~~~~~g~~~l~~~d~~~~-----~-~~~l~~------ 77 (396)
T 3c5m_A 15 VDSDTQV--KVTRLTPTDIICHRNYFYQKCFTQD---GKKLLFAGDFDGNRNYYLLNLETQ-----Q-AVQLTE------ 77 (396)
T ss_dssp ECTTTCC--EEEECSCTTSCEECCCTTSCCBCTT---SCEEEEEECTTSSCEEEEEETTTT-----E-EEECCC------
T ss_pred ecCCCCc--ceEEEecCCCCccceeeecCcCCCC---CCEEEEEEecCCCceEEEEECCCC-----c-EEEeec------
Confidence 3555533 45555443333 677899999 7777776553 3 6888887651 1 111110
Q ss_pred ccCcc-eEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc--cceeeeecCCCCCCCCeeEeeecCCCeEE
Q 008939 228 VNNSR-CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD--QTQFSVAHPRYSKSNPIARWHICQGSINS 304 (548)
Q Consensus 228 ~~~~~-v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 304 (548)
+... ...+.|+|+++ .|+....++.|++||+.... .......... .....+.... .......+ ...
T Consensus 78 -~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~--~~~~~~~~------~~~ 146 (396)
T 3c5m_A 78 -GKGDNTFGGFISTDER-AFFYVKNELNLMKVDLETLE-EQVIYTVDEEWKGYGTWVANSD--CTKLVGIE------ILK 146 (396)
T ss_dssp -SSCBCTTTCEECTTSS-EEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTT--SSEEEEEE------EEG
T ss_pred -CCCCccccceECCCCC-EEEEEEcCCcEEEEECCCCC-cEEEEecccccCCCCCEEEecc--CCcccccc------ccc
Confidence 1222 23478999999 88888888899999987521 1111100000 0000000000 00000000 011
Q ss_pred EEECCCCCEEEEE-----ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc-CCCEEEEEeCC------CeEEEEECCC
Q 008939 305 IAFSTDGTYLATV-----GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM-DGKYILTGGED------DLVQVWSMED 372 (548)
Q Consensus 305 ~~~sp~g~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d------g~I~vwd~~~ 372 (548)
+.|+|+++.++.. ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..
T Consensus 147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 4578888877654 35678999999988765444 4667789999999 88877766543 3688899876
Q ss_pred ceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 373 RKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 373 ~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
++........ ...+..+.|+| || .+|+..+.+ +.|.+||+.+++..
T Consensus 226 ~~~~~l~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (396)
T 3c5m_A 226 SNVRKIKEHAEGESCTHEFWIP-------DG------SAMAYVSYFKGQTDRVIYKANPETLENE 277 (396)
T ss_dssp CCCEESSCCCTTEEEEEEEECT-------TS------SCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred CceeEeeccCCCccccceEECC-------CC------CEEEEEecCCCCccceEEEEECCCCCeE
Confidence 6544333321 23578899999 98 556655443 45999999887653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=150.13 Aligned_cols=237 Identities=10% Similarity=0.057 Sum_probs=149.5
Q ss_pred ceeEEeCCCCCEEEEecCC----eEEEEEccCCCCCCeEEEecCCCC-ceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 133 MTNTNFDGKGTYIIFNVGD----AIFISDLNSQDKDPIKSIHFSNSN-PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d----~v~vwd~~~~~~~~i~~~~~~~~~-~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
+..++|+|||++|++...+ .|++||+.++. ...+...... ..+..|+|+ +..|+....++.|++||+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~spd---g~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFISTD---ERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECTT---SSEEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECCC---CCEEEEEEcCCcEEEEECCC
Confidence 5578999999998886432 78999988643 3333333333 334789999 88899999999999999875
Q ss_pred cccccccceeeeeeeccCCcccCcceEE-------------------EEEecCCCcEEEEE-----eCCCcEEEEEcCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTS-------------------VTWVPGGDGAFVVG-----HADGNLYVYEKSKD 263 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~~p~~~~~l~s~-----~~dg~v~vwd~~~~ 263 (548)
.. .+.+.. . +...... +.|+|+++ .++.. ..+..|++||+...
T Consensus 112 ~~---~~~~~~---~------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 112 LE---EQVIYT---V------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp CC---EEEEEE---C------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CC---cEEEEe---c------ccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCC
Confidence 21 011110 0 0111111 34667766 33332 35567888887652
Q ss_pred CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECC------CeEEEEeCCCCeEEEe
Q 008939 264 GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRD------GYLRVFDYSKEQLICG 336 (548)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~d------g~v~vwd~~~~~~~~~ 336 (548)
. ...+..+...+..+.|+| +++.|+..+.+ ..|.+||+..++....
T Consensus 179 ~---------------------------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 179 E---------------------------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp C---------------------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred c---------------------------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 1 122223456788999999 88878777654 3688899876654333
Q ss_pred eeec-CCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 337 GKSY-YGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 337 ~~~~-~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.... ...+..++|+|||++|+..+.+ +.|++||+.+++...... ... .. +.|+|. || .+
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~------dg------~~ 296 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNF------DG------SL 296 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECS------SS------SE
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCC------CC------ce
Confidence 2311 2357889999999987776543 449999998876543322 111 23 778751 56 45
Q ss_pred EEEEe----------------CCCeEEEEECCCCeE
Q 008939 411 FGSVG----------------QDTRLLLWDLEMDEI 430 (548)
Q Consensus 411 l~s~~----------------~Dg~i~lwd~~~~~~ 430 (548)
++.++ .+..|.+||+.+++.
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 65543 347899999987764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-14 Score=139.63 Aligned_cols=245 Identities=9% Similarity=0.000 Sum_probs=173.2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCC------------------------cEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADG------------------------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg------------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.-..+.+|+++|+++ ++++...+. .|++||..+..
T Consensus 22 ~l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-------------------- 80 (329)
T 3fvz_A 22 LPGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-------------------- 80 (329)
T ss_dssp CCSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--------------------
T ss_pred ecCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--------------------
Confidence 356799999999998 777777663 57777765411
Q ss_pred CCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe-EEEee---------eecCCceEEEEEcc-C
Q 008939 285 RYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ-LICGG---------KSYYGALLCCAWSM-D 352 (548)
Q Consensus 285 ~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~-~~~~~---------~~~~~~v~~l~~sp-d 352 (548)
.+..+. .+-..+..++++++|+++++...++.|++||..... .+..+ ..+......++++| +
T Consensus 81 ------~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 81 ------ILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp ------EEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred ------EEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC
Confidence 111111 122468899999999988888888999999986442 34443 23445688999999 8
Q ss_pred CCEEEEEe-CCCeEEEEECCCceeEEeccC----------CCCCeEEEEEecCCCCCCCC-CCccceeEEEEEEeCCCeE
Q 008939 353 GKYILTGG-EDDLVQVWSMEDRKVVAWGEG----------HNSWVSGVAFDSYWSQPNSD-GTAETVMYRFGSVGQDTRL 420 (548)
Q Consensus 353 g~~l~sgs-~dg~I~vwd~~~~~~~~~~~~----------h~~~V~~v~~~p~~~~~~~d-g~~~~~~~~l~s~~~Dg~i 420 (548)
++++++.+ .++.|++|| .+++.+..+.. +-.....|+++| + | .++++...++.|
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-------~~g------~l~v~d~~~~~I 220 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-------HLD------QLCVADRENGRI 220 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-------TTT------EEEEEETTTTEE
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-------CCC------EEEEEECCCCEE
Confidence 88888886 699999999 55666666542 224588999999 8 6 788888889999
Q ss_pred EEEECCCCeEEeeeecCC---CCCCceecCCCCccccCCee-eecccCCCCceeecCCCCceEEee---cCCCCeeEEEE
Q 008939 421 LLWDLEMDEIVVPLRRGP---LGGSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAHR---VHTEPLSGLIF 493 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~~---~h~~~V~~l~f 493 (548)
++||..+++.+..+.... ....+.+.+ +.....+..+ ........+.+|+....+.+..+. .+...+.+|++
T Consensus 221 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 221 QCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp EEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred EEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 999999899888775432 222344555 2111111111 122234577888988888887773 67778999999
Q ss_pred eCCe--EEEEECCCeEEEEeCCCC
Q 008939 494 TQES--VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 494 spd~--l~t~s~Dg~I~iW~~~~~ 515 (548)
+|++ +++...++.|++|++.+.
T Consensus 300 ~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCCCEEEEECCCCEEEEEeCCcc
Confidence 9985 677788999999998654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=156.58 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=137.6
Q ss_pred ecCCCCceEEEecCCCCCCceEEEE--EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceE---------EEEE
Q 008939 170 HFSNSNPVCHAFDQDAKDGHDLLIG--LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCT---------SVTW 238 (548)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~~~~l~~g--~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~l~~ 238 (548)
..+...+..++|+++ ...++.. ..++...||.... +....... .+...+. ...|
T Consensus 20 ~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 20 ASRSGRPACVGAVGD---EVWWVAPRPAEAGRATLVRRRA-----DGAEESAL-------PAPWNVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHTCSCCEEEEEETT---EEEEEEEETTTTTEEEEEEECT-----TSCEEESS-------CTTCCBCCCGGGTCCCCEEE
T ss_pred hhcCCccceeEEcCC---eEEEEecCcccCCcEEEEEECC-----CCCcceeC-------CCCccccccccccCCcccee
Confidence 345667888889876 4445544 3477888998632 11111111 1222333 5566
Q ss_pred e--cCCCcEEEEEe-CCCcEEEEEcCCCC-CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE
Q 008939 239 V--PGGDGAFVVGH-ADGNLYVYEKSKDG-AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL 314 (548)
Q Consensus 239 ~--p~~~~~l~s~~-~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 314 (548)
+ ||++.+|+.+. .+..|++|++...+ .....+..... ..|...+..++|+|||+.|
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~--------------------~~~~~~~~~~~~spDg~~l 144 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA--------------------VGGGLRWADPVLLPERGEV 144 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC--------------------STTCEEEEEEEEETTTTEE
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc--------------------CCCCccccCcEECCCCCEE
Confidence 6 99994144443 45666666654101 11111110000 0033567899999999999
Q ss_pred EEEECC----------CeEEEEeCCC------CeEEEeee-ecCCceEEEEEccCCCEEEEEeCC--------CeEEEEE
Q 008939 315 ATVGRD----------GYLRVFDYSK------EQLICGGK-SYYGALLCCAWSMDGKYILTGGED--------DLVQVWS 369 (548)
Q Consensus 315 ~s~~~d----------g~v~vwd~~~------~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd 369 (548)
++++.| ..|++||+.+ ++.. .+. .+...+..++|+|||++|+..+.+ ..|.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d 223 (662)
T 3azo_A 145 WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTAR 223 (662)
T ss_dssp EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEE
T ss_pred EEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEE
Confidence 998877 5899999987 5544 333 455678889999999999987754 3799999
Q ss_pred CC-Cc---eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCeEEe
Q 008939 370 ME-DR---KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDEIVV 432 (548)
Q Consensus 370 ~~-~~---~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~~~~ 432 (548)
++ ++ +......+|...+..+.|+| || ++++++..|+ .|.+||+.+++...
T Consensus 224 ~~~~g~~~~~~~l~~~~~~~~~~~~~sp-------dg------~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 224 VTEDGRFADTRTLLGGPEEAIAQAEWAP-------DG------SLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp ECTTSCEEEEEEEEEETTBCEEEEEECT-------TS------CEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred ECCCCcccccEEeCCCCCceEcceEECC-------CC------eEEEEECCCCCeEEEEEECCCCceee
Confidence 99 56 44444555678999999999 99 6777777888 67777776766543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-14 Score=138.26 Aligned_cols=255 Identities=11% Similarity=0.172 Sum_probs=163.6
Q ss_pred ceeEEeCCCCCEEEEec----------CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC---Cc
Q 008939 133 MTNTNFDGKGTYIIFNV----------GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---GD 199 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~----------~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---g~ 199 (548)
+....+ ||+.+++.. ...|++||+.++. ...+ ..+..++|+|+ +..|+....+ +.
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~l----~~~~~~~~SpD---g~~la~~~~~~~~~~ 84 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---RRFI----ENATMPRISPD---GKKIAFMRANEEKKV 84 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---EEEE----ESCEEEEECTT---SSEEEEEEEETTTTE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---eEEc----ccCCCeEECCC---CCEEEEEEeccCCCc
Confidence 445666 888888742 2278999998754 2333 46888999999 7778877654 33
Q ss_pred --EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC--------------------------
Q 008939 200 --VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-------------------------- 251 (548)
Q Consensus 200 --I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-------------------------- 251 (548)
|++||+.. ++ ...... +.. +..++|+|+++ .|+.++.
T Consensus 85 ~~l~~~~~~~-----g~-~~~l~~-------~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 85 SEIWVADLET-----LS-SKKILE-------AKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEETTT-----TE-EEEEEE-------ESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------
T ss_pred ceEEEEECCC-----Cc-eEEEEc-------CCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 77777654 11 111111 223 89999999998 5666543
Q ss_pred -CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-------eE
Q 008939 252 -DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-------YL 323 (548)
Q Consensus 252 -dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-------~v 323 (548)
...|++||+... ..+..+.. . .+..++|+||| +++++..+. ..
T Consensus 150 ~~~~l~~~d~~~~--------------------------~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 150 EKTTFWIFDTESE--------------------------EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp CEEEEEEEETTTT--------------------------EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCE
T ss_pred ccceEEEEECCCC--------------------------eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccc
Confidence 246777877641 11122222 2 67789999999 777776542 33
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC--------CeEEEEECCCceeEEeccCCCCCeEE-EEEecC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED--------DLVQVWSMEDRKVVAWGEGHNSWVSG-VAFDSY 394 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d--------g~I~vwd~~~~~~~~~~~~h~~~V~~-v~~~p~ 394 (548)
.||.+.+++.. .+..+ ..+..+ +|||++|+..+.+ ..|.+|| +++.......|...+.. +.|+
T Consensus 201 ~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-- 272 (347)
T 2gop_A 201 DIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-- 272 (347)
T ss_dssp EEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--
T ss_pred cEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--
Confidence 44444455543 33334 445444 9999988877754 3688888 66665555667778886 7884
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~ 474 (548)
|| +++++..++.++|| +.+++....
T Consensus 273 ------dg-------~~~~~~~~~~~~l~-~~~g~~~~~----------------------------------------- 297 (347)
T 2gop_A 273 ------GK-------VYFTLFEEGSVNLY-IWDGEIKPI----------------------------------------- 297 (347)
T ss_dssp ------TE-------EEEEEEETTEEEEE-EESSSEEEE-----------------------------------------
T ss_pred ------Cc-------EEEEEecCCcEEEE-EcCCceEEE-----------------------------------------
Confidence 33 77888899999999 875443211
Q ss_pred CCceEEeecCCCCeeEEEEeCCeEEEEECCCeE-EEEeCC
Q 008939 475 LSPLVAHRVHTEPLSGLIFTQESVLTVCREGHI-KIWMRP 513 (548)
Q Consensus 475 ~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I-~iW~~~ 513 (548)
..+...|.++.|+|..+++++.++.. .||.+.
T Consensus 298 -------~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 -------AKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -------ECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -------ecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 12345688899999335667777664 777765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=137.97 Aligned_cols=283 Identities=10% Similarity=-0.025 Sum_probs=182.3
Q ss_pred CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc----------CCcEEEEEeeecccccccceeeee
Q 008939 151 DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN----------SGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 151 d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~----------dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
+.|++||..+++ .+..+... ..+ .++|+|+ +++|+++.. ++.|.+||+.+ .+.....
T Consensus 31 ~~v~v~D~~t~~--~~~~i~~g-~~p-~i~~spd---g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t------~~~~~~i 97 (361)
T 2oiz_A 31 SRVHVYDYTNGK--FLGMVPTA-FNG-HVQVSND---GKKIYTMTTYHERITRGKRSDVVEVWDADK------LTFEKEI 97 (361)
T ss_dssp CEEEEEETTTCC--EEEEEECC-EEE-EEEECTT---SSEEEEEEEEETTSSSSCEEEEEEEEETTT------CCEEEEE
T ss_pred CeEEEEECCCCe--EEEEecCC-CCC-ceEECCC---CCEEEEEEecccccccCCCCCEEEEEECcC------CcEEEEE
Confidence 389999988754 66666643 345 8999999 778888863 56799999865 1222222
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE-eee
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR-WHI 297 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 297 (548)
........+......++|+|+++ +|+++.. ++.|.+||+.+.. . +.. +.
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~-~-------------------------~~~~i~- 149 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGD-Y-------------------------VEDVTA- 149 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTE-E-------------------------EEEEGG-
T ss_pred EcCccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCc-E-------------------------EEEEec-
Confidence 21111111234567899999999 7777653 6899999998631 1 111 11
Q ss_pred cCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCC-CeEEEe------eeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 298 CQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSK-EQLICG------GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 298 h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~-~~~~~~------~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
......+.+.|++ ..+++.+.||.+.+|++.. ++.... +.....+ ..+.+++++..++..+.++.|.++|
T Consensus 150 -~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d 227 (361)
T 2oiz_A 150 -AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSAD 227 (361)
T ss_dssp -GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEE
T ss_pred -CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEE
Confidence 0223335667765 6778888999999999865 554422 1112222 2334567888888888899999999
Q ss_pred CCCce--eEEeccC------CC----CCeEEEEEecCCCCCCCCCCccceeEEEEEEe----------CCCeEEEEECCC
Q 008939 370 MEDRK--VVAWGEG------HN----SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG----------QDTRLLLWDLEM 427 (548)
Q Consensus 370 ~~~~~--~~~~~~~------h~----~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~----------~Dg~i~lwd~~~ 427 (548)
+.... .+..+.- +. .....++|+| |+. +.+++.. .+..|.+||+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-------dg~-----~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-------ASG-----RMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-------TTT-----EEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred ecCCCceecccccccCccccccccccCCeeEEEEec-------CCC-----eEEEEEccCCCcccccCCCceEEEEECCC
Confidence 97543 2222110 11 1112378999 862 3444433 135899999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC--CceEEeecCCCCeeEEEEeCC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL--SPLVAHRVHTEPLSGLIFTQE 496 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~--~~~~~~~~h~~~V~~l~fspd 496 (548)
++.+..+..+. ...+.|++++. .+.+... ..+.+||..+. +.+..+..+......++|+|+
T Consensus 296 ~~~v~~i~~~~-p~~ia~spdg~------~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 296 KQRVARIPGRD-ALSMTIDQQRN------LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp TEEEEEEECTT-CCEEEEETTTT------EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CcEEEEEecCC-eeEEEECCCCC------EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 99999998867 88888888873 2223333 77788888887 777776556666777888876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-12 Score=121.93 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=168.0
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
....+...+..++++++|.+.+.... +.|.+||.. + .+..+. .....+.+++++++ +.++++...++.|.
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSD---GEVWFTENAANKIG 81 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEE
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCC---CCEEEeCCCCCeEE
Confidence 33445567889999999998887664 489999987 3 233333 23467899999987 66555555578899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
.||... + ... ... + .....+.++++.+++. ++++...++.|.+||. . +... .+
T Consensus 82 ~~~~~g------~-~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~-g~~~-~~----------- 134 (299)
T 2z2n_A 82 RITKKG------I-IKE-YTL-P---NPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-D-GKIR-EY----------- 134 (299)
T ss_dssp EECTTS------C-EEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTTTEEEEECT-T-CCEE-EE-----------
T ss_pred EECCCC------c-EEE-EeC-C---CcCCCceeeEECCCCC-EEEEecCCceEEEECC-C-CCEE-Ee-----------
Confidence 998642 1 111 100 0 1245688999999987 7777667889999987 2 2110 00
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEe
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+...+.+++++++++++++...++.|.+||. +++.... +......+..+++.++|+++++..
T Consensus 135 ------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 135 ------------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp ------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred ------------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc
Confidence 00011256889999999987777766789999999 6665432 333445688999999999777776
Q ss_pred CCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 361 EDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.++.|.+||. +++.... +..+...+.++++++ +| +++++...++.|..||. .++
T Consensus 202 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-------~g------~l~v~~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 202 IGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-------GI------DLWFTEWGANKIGRLTS-NNI 256 (299)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-------TT------CEEEEETTTTEEEEEET-TTE
T ss_pred CCceEEEECC-CCcEEEEECCCCCCCceeEEECC-------CC------CEEEeccCCceEEEECC-CCc
Confidence 7889999999 6654332 334567889999998 88 56666657889999998 443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-11 Score=126.99 Aligned_cols=333 Identities=12% Similarity=0.030 Sum_probs=204.5
Q ss_pred eCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 138 FDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 138 ~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
.++.+.++++..++ .|.++|..+.. .+..+.. ...+.+++|+|+ +++|++++.++.|.+||+... ..++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~--v~~~i~~-g~~p~~v~~SpD---Gr~lyv~~~dg~V~viD~~~~----t~~~ 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYE--IKTVLDT-GYAVHISRLSAS---GRYLFVIGRDGKVNMIDLWMK----EPTT 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCC--EEEEEEC-SSCEEEEEECTT---SCEEEEEETTSEEEEEETTSS----SCCE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCe--EEEEEeC-CCCccceEECCC---CCEEEEEcCCCeEEEEECCCC----CCcE
Confidence 34545566666655 99999999844 7777763 447789999999 889999999999999998510 0122
Q ss_pred eeeeeeccCCcccCcceEEEEEe----cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWV----PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~----p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
..... .......++|+ |+++.++++...++.|.++|..+.. ....++.... .+
T Consensus 233 v~~i~-------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~---------------~~ 289 (567)
T 1qks_A 233 VAEIK-------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGM---------------TY 289 (567)
T ss_dssp EEEEE-------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEE---------------CT
T ss_pred eEEEe-------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEecccc---------------cc
Confidence 22222 23346799999 6999455555567999999976521 1111110000 00
Q ss_pred eEeeec-CCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEE--EeeeecCCceEEEEEccCCCEEEEEe-CCCeEEE
Q 008939 293 ARWHIC-QGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQV 367 (548)
Q Consensus 293 ~~~~~h-~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~v 367 (548)
.....| ...+..+.+++++.. ++....+|.|.++|+...+.+ ..+ ........+.|+|+|++++++. .++.|.+
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 000001 125778888887654 445556799999999865432 222 2344577899999999887665 5789999
Q ss_pred EECCCceeEEeccC-----CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCC-------CeEEeee
Q 008939 368 WSMEDRKVVAWGEG-----HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEM-------DEIVVPL 434 (548)
Q Consensus 368 wd~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~-------~~~~~~~ 434 (548)
+|+.+++.+..+.- |.+.-..+ ++| ++. ..+++.. .++.|.++|... .+.++.+
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-------~~g-----~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-------TFG-----PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EET-------TTE-----EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECC-------CCC-----cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 99999987765542 43212122 577 641 4455554 468999999987 5677777
Q ss_pred ecCCCC-CCceecCCCCccccCCee-eecccCCCCceeecCCC-----C-ceEEee--------cCCCCeeEEEEeCCe-
Q 008939 435 RRGPLG-GSPTFSTGSQSAHWDNVC-PVGTLQPAPSMRDVPKL-----S-PLVAHR--------VHTEPLSGLIFTQES- 497 (548)
Q Consensus 435 ~~~~~~-~~~~~~~~~~~~~~d~~~-~~g~~~~~~~~~d~~~~-----~-~~~~~~--------~h~~~V~~l~fspd~- 497 (548)
...... ..+.+++++...--+..+ .-......+.++|+.+. . .+..+. .....+..+.|+|++
T Consensus 436 ~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 515 (567)
T 1qks_A 436 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT 515 (567)
T ss_dssp ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence 764322 234456665311000000 00001246677777665 2 112332 123568899999985
Q ss_pred --EEEEE----CCCeEEEEeCCCCCc
Q 008939 498 --VLTVC----REGHIKIWMRPGVAE 517 (548)
Q Consensus 498 --l~t~s----~Dg~I~iW~~~~~~~ 517 (548)
+++.. .++.|.|+|..+.+.
T Consensus 516 ~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 516 EVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEEEeecCCCCCCcEEEEECCCceE
Confidence 45543 479999999887654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-13 Score=129.47 Aligned_cols=239 Identities=10% Similarity=-0.004 Sum_probs=164.1
Q ss_pred CceeEEeCCCCCEEE-EecCC-eEEEEEccCCCCCCeEEEe-cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYII-FNVGD-AIFISDLNSQDKDPIKSIH-FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~-~~~~d-~v~vwd~~~~~~~~i~~~~-~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.+..++++++|.+++ ....+ .|++||..+.. ...+. .....+.+++++++ +. |+++..++.|++||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~---g~-l~v~~~~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGA---GT-VYVTDFNNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTT---CC-EEEEETTTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCC---CC-EEEEcCCCEEEEEeCCCc
Confidence 556899999999776 53444 89999876532 22221 22357889999987 66 555555889999987652
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
...... . .....+.++++.|++. ++++...++.|++|+...... ...
T Consensus 98 ------~~~~~~---~---~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---~~~----------------- 144 (270)
T 1rwi_B 98 ------NQTVLP---F---DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ---TVL----------------- 144 (270)
T ss_dssp ------CCEECC---C---CSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC---EEC-----------------
T ss_pred ------eEeeee---c---CCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee---Eee-----------------
Confidence 111100 0 1235688999999987 777777788999996543110 000
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
.......+.+++++++++++++...++.|.+||............+...+.+++++++|.++++...++.|.+|
T Consensus 145 ------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 ------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp ------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred ------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 00111356789999999877766677899999998766544333344678899999999877777778999999
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
|............+...+.+++++| +| .++++...++.|+++++...+
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~i~~~~-------~g------~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 219 LAGSTTSTVLPFTGLNTPLAVAVDS-------DR------TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCSCCEECCCCSCSCEEEEEECT-------TC------CEEEEEGGGTEEEEECCCGGG
T ss_pred cCCCCcceeeccCCCCCceeEEECC-------CC------CEEEEECCCCEEEEEcCCCcc
Confidence 9976554433333446789999999 88 688888899999999987654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-13 Score=129.83 Aligned_cols=241 Identities=14% Similarity=0.173 Sum_probs=158.5
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++|++++..++....+ .+++|. .+.+..+..+...+.+++|+|+ +.+++++..++.|++||....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---g~l~~~~~~~~~i~~~d~~~~--- 76 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQ---GQLFLLDVFEGNIFKINPETK--- 76 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTT---SCEEEEETTTCEEEEECTTTC---
T ss_pred cceeeecCCccceeEEeecccCcccc-----cceeEEEeccCccccCcEECCC---CCEEEEECCCCEEEEEeCCCC---
Confidence 4566777776665544333 788882 2255666656667899999987 776777888899999997651
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
++..... .+...+.+++|+|++. ++++...+ +.|++||..... ....+..
T Consensus 77 ---~~~~~~~------~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~--------------- 130 (333)
T 2dg1_A 77 ---EIKRPFV------SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN-LQDIIED--------------- 130 (333)
T ss_dssp ---CEEEEEE------CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS-CEEEECS---------------
T ss_pred ---cEEEEee------CCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCE-EEEEEcc---------------
Confidence 1111110 1356799999999998 77766665 689999976521 1000000
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-Ee
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGR------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GG 360 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs 360 (548)
..+...+.+++++|+|+++++... .+.|..+|..+++.... ......+..++|+|+++.|+. ..
T Consensus 131 --------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 131 --------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp --------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEG
T ss_pred --------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeC
Confidence 011256889999999987776543 35677777665554332 223345789999999986654 45
Q ss_pred CCCeEEEEECCC-ceeEE--------eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 361 EDDLVQVWSMED-RKVVA--------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 361 ~dg~I~vwd~~~-~~~~~--------~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
.++.|.+||+++ +..+. .+.++ ..+..+++++ +| +++++...++.|.+||. .++.+
T Consensus 202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-------~G------~l~v~~~~~~~v~~~d~-~g~~~ 266 (333)
T 2dg1_A 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-------DD------NLYVAMYGQGRVLVFNK-RGYPI 266 (333)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-------TC------CEEEEEETTTEEEEECT-TSCEE
T ss_pred CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC-------CC------CEEEEEcCCCEEEEECC-CCCEE
Confidence 678999999964 33221 12222 4678899999 88 67777777899999998 45544
Q ss_pred eee
Q 008939 432 VPL 434 (548)
Q Consensus 432 ~~~ 434 (548)
..+
T Consensus 267 ~~~ 269 (333)
T 2dg1_A 267 GQI 269 (333)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-13 Score=147.32 Aligned_cols=238 Identities=14% Similarity=0.116 Sum_probs=152.6
Q ss_pred CCCCEEEEecCC------eEEEEEccCCCCCCeEEEe---cC---CCCceEEEecCCCCCCceEEEEEcCC-----cEEE
Q 008939 140 GKGTYIIFNVGD------AIFISDLNSQDKDPIKSIH---FS---NSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~---~~---~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~i 202 (548)
|+|+++++...+ .+++.+...+. ...-+. +. ...+..++|+|+ +.+|+.+..++ +|++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~lld~~~l~~~~~~~~~~~~~SPD---g~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGE--ARVFLDPNILSDDGTVALRGYAFSED---GEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSC--CEEEECGGGGCTTSCEEEEEEEECTT---SSEEEEEEEETTCSCEEEEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCC--cEEEECHHHhccCCCEEEEEEEECCC---CCEEEEEEcCCCCceEEEEE
Confidence 788888774422 34444444332 221111 11 124678899999 77888777654 8999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc----------------EEEEEcCCCCCC
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN----------------LYVYEKSKDGAG 266 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~----------------v~vwd~~~~~~~ 266 (548)
||+.+. +...... ....+..++|+||++ .|+.+..++. |++|++.+...
T Consensus 156 ~d~~tg-----~~~~~~~--------~~~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~- 220 (710)
T 2xdw_A 156 MKVDGA-----KELPDVL--------ERVKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS- 220 (710)
T ss_dssp EETTTT-----EEEEEEE--------EEECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-
T ss_pred EECCCC-----CCCcccc--------cCcccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcc-
Confidence 999762 2111111 122367899999999 6777766655 99999875211
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEee--ecCCCeEEEEECCCCCEEEEEEC-----CCeEEEEeCCC------Ce-
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWH--ICQGSINSIAFSTDGTYLATVGR-----DGYLRVFDYSK------EQ- 332 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~-----dg~v~vwd~~~------~~- 332 (548)
.....+. .|...+..+.|+|||++|+..+. +..|.+||+.+ ++
T Consensus 221 -----------------------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 221 -----------------------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp -----------------------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred -----------------------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 0011111 13345788999999999988765 67899999986 42
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCce--eEEeccCCCC--CeEEEEEecCCCCCCCCCCc
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDRK--VVAWGEGHNS--WVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~~--~~~~~~~h~~--~V~~v~~~p~~~~~~~dg~~ 404 (548)
....+..+...+.. .|+|+|+.|+..+.+ ..|.+||+.++. ....+..|.. .+..+.|++ ++
T Consensus 278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~-- 347 (710)
T 2xdw_A 278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-------SN-- 347 (710)
T ss_dssp CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-------TT--
T ss_pred ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-------CC--
Confidence 34445556555554 588999988776653 369999998764 2234444544 688899987 76
Q ss_pred cceeEEEEEEeCCCe--EEEEECCCCeEEeee
Q 008939 405 ETVMYRFGSVGQDTR--LLLWDLEMDEIVVPL 434 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~--i~lwd~~~~~~~~~~ 434 (548)
.++++...|+. |.+||+.+++.+..+
T Consensus 348 ----~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 348 ----FLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp ----EEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred ----EEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 78888888885 566677666654443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-13 Score=128.98 Aligned_cols=240 Identities=12% Similarity=0.073 Sum_probs=159.5
Q ss_pred CCceeEEeCCCCC-EEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 131 TSMTNTNFDGKGT-YIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~-~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.-+..++|+++|+ +++++..+ .|+.||..++ +..+......+.+++++|+ +.++++...++.|.+||..+.
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~d---g~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQ---GHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTT---CCEEEEETTTTEEEEECSTTC
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCC---CcEEEEecCCCeEEEEcCCCC
Confidence 3456799999999 55555544 9999999863 5566666778999999998 666655555688999997541
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE----EeCC-----------CcEEEEEcCCCCCCCCCcccc
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV----GHAD-----------GNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s----~~~d-----------g~v~vwd~~~~~~~~~~~~~~ 273 (548)
+ +...... ........+++++++|+|. ++++ |..+ +.-.||.++..+.
T Consensus 101 -----~-~~~~~~~--~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-------- 163 (296)
T 3e5z_A 101 -----E-WESIADS--FEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-------- 163 (296)
T ss_dssp -----C-EEEEECE--ETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--------
T ss_pred -----c-EEEEeec--cCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCC--------
Confidence 1 1111000 0001234578899999998 6666 3210 1123444433111
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-CCeE---EEeeeecCCceEEEEE
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-KEQL---ICGGKSYYGALLCCAW 349 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-~~~~---~~~~~~~~~~v~~l~~ 349 (548)
+..+..+......++|+|+++.|++.+.++.|.+||+. ++++ ...+..+...+..+++
T Consensus 164 ------------------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 164 ------------------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp ------------------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred ------------------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 12222334567899999999988767778999999997 5554 2223334456778999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEE-ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 350 SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF-DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 350 spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++|+++++. ++.|.+||.+ ++.+..+..+.. +.+++| .| ++ ..|..++.+ .|.-++.++.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~-------d~------~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP-------EG------RTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST-------TS------CEEEEEETT-EEEEEECSCC
T ss_pred CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC-------CC------CEEEEEcCC-eEEEEEcccc
Confidence 9999866665 8899999987 777777777777 999999 47 77 566666665 4555666665
Q ss_pred eE
Q 008939 429 EI 430 (548)
Q Consensus 429 ~~ 430 (548)
++
T Consensus 288 ~~ 289 (296)
T 3e5z_A 288 GL 289 (296)
T ss_dssp BC
T ss_pred cc
Confidence 53
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-13 Score=145.52 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=168.2
Q ss_pred CCCCceeEEeCCCCCEEEEecC----C--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVG----D--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~----d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--- 199 (548)
|...+..++|+|||++|++... + .|++||+.++. .+. .......+..++|+|+ +..|+.+..++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--~~~-~~~~~~~~~~~~wspD---g~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELP-DVLERVKFSCMAWTHD---GKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEE-EEEEEECSCCEEECTT---SSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCc-ccccCcccceEEEEeC---CCEEEEEEECCcccc
Confidence 3345678999999999998532 2 89999999754 332 2222234678999999 778998888765
Q ss_pred -------------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC-----CCcEEEEEcC
Q 008939 200 -------------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-----DGNLYVYEKS 261 (548)
Q Consensus 200 -------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-----dg~v~vwd~~ 261 (548)
|++|++.+.. ....++. . ...+...+..+.|+|+++ +|+.... +..|++||+.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~--~~~~~v~----~--~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQ--SEDILCA----E--FPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCG--GGCEEEE----C--CTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGG
T ss_pred ccccccccCCCCEEEEEECCCCc--ccceEEe----c--cCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECc
Confidence 9999987621 1111111 1 011345678999999999 5655543 5689999987
Q ss_pred CCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCCeE--EE
Q 008939 262 KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKEQL--IC 335 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~~~--~~ 335 (548)
...... . .......+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.+++. ..
T Consensus 268 ~~~~~~------~-------------~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 327 (710)
T 2xdw_A 268 QESNGI------T-------------GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327 (710)
T ss_dssp GSSSSS------C-------------SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred cccccc------C-------------CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence 410000 0 00012233334444544 488888888777653 3699999987641 23
Q ss_pred eeeecCC--ceEEEEEccCCCEEEEEeCCCe--EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 336 GGKSYYG--ALLCCAWSMDGKYILTGGEDDL--VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 336 ~~~~~~~--~v~~l~~spdg~~l~sgs~dg~--I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.+..+.. .+..++|++++.++++...|+. |.+||+.+++.+..+..+...|..+.++| ++. .++
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~-------d~~-----~l~ 395 (710)
T 2xdw_A 328 VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK-------KDT-----EIF 395 (710)
T ss_dssp EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT-------TCS-----EEE
T ss_pred eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC-------CCC-----EEE
Confidence 3334433 6888999988888888888884 56678777887778887888899999988 772 233
Q ss_pred EEEe---CCCeEEEEECCCCe
Q 008939 412 GSVG---QDTRLLLWDLEMDE 429 (548)
Q Consensus 412 ~s~~---~Dg~i~lwd~~~~~ 429 (548)
++.+ ..+.|.+||+.+++
T Consensus 396 ~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSSCCCEEEEEETTSSS
T ss_pred EEEeCCCCCCEEEEEECCCCc
Confidence 3333 35789999999877
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=124.44 Aligned_cols=239 Identities=10% Similarity=0.010 Sum_probs=163.2
Q ss_pred CceEEEecCCCCCCceEE-EEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 175 NPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
.+.+++++++ +.+++ +...++.|.+||..... ... .. ......+.+|++.+++. ++++.. ++
T Consensus 25 ~p~~i~~~~~---g~l~v~~~~~~~~i~~~~~~~~~------~~~-~~-----~~~~~~p~~i~~~~~g~-l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA---GNVYVTSEGMYGRVVKLATGSTG------TTV-LP-----FNGLYQPQGLAVDGAGT-VYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTT---CCEEEEECSSSCEEEEECC-----------EE-CC-----CCSCCSCCCEEECTTCC-EEEEET-TT
T ss_pred CccceEECCC---CCEEEEccCCCCcEEEecCCCcc------cce-Ee-----eCCcCCcceeEECCCCC-EEEEcC-CC
Confidence 7889999987 66555 33677899999865421 100 00 01234678899999987 666555 88
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL 333 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~ 333 (548)
.|++||..... ...+. ......+.+++++++++++++...++.|.+|+..+...
T Consensus 88 ~i~~~d~~~~~--~~~~~------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 88 RVVTLAAGSNN--QTVLP------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 141 (270)
T ss_dssp EEEEECTTCSC--CEECC------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred EEEEEeCCCce--Eeeee------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence 99999976421 10000 00114688999999998777777788999998765544
Q ss_pred EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
..........+.+++++++|+++++...++.|.+||............+...+.+|++++ +| +++++
T Consensus 142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-------~g------~l~v~ 208 (270)
T 1rwi_B 142 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-------AG------TVYVT 208 (270)
T ss_dssp EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-------TC------CEEEE
T ss_pred EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC-------CC------CEEEE
Confidence 332223334678899999999777777788999999987665544344446789999999 88 67777
Q ss_pred EeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
...++.|.+||........ .. ..+...+.+|++
T Consensus 209 ~~~~~~v~~~~~~~~~~~~-~~----------------------------------------------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTSTV-LP----------------------------------------------FTGLNTPLAVAV 241 (270)
T ss_dssp ETTTSCEEEECTTCSCCEE-CC----------------------------------------------CCSCSCEEEEEE
T ss_pred ECCCCcEEEEcCCCCccee-ec----------------------------------------------cCCCCCceeEEE
Confidence 7778899999986543211 00 012345789999
Q ss_pred eCCe--EEEEECCCeEEEEeCCCCC
Q 008939 494 TQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 494 spd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
++++ +++...++.|+++++...+
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9974 6777889999999987644
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=125.59 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=143.9
Q ss_pred CeEEEecCCCCceEEEecCCCCCCc-eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGH-DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~-~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
.+..+.-....+.+++|+|+ ++ +++++..++.|+.||.... ... .. .+...+.+++++|++.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~---g~~l~~~~~~~~~i~~~~~~~~-------~~~-~~------~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPA---RSAVIFSDVRQNRTWAWSDDGQ-------LSP-EM------HPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGG---GTEEEEEEGGGTEEEEEETTSC-------EEE-EE------SSCSSEEEEEECTTCC
T ss_pred cEEEEecCCccccCCeEeCC---CCEEEEEeCCCCEEEEEECCCC-------eEE-EE------CCCCCcceeeECCCCc
Confidence 45555555667889999998 66 7888888999999998751 111 11 1356789999999998
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE----E-
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV----G- 318 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~----~- 318 (548)
++++...++.|.+||..+.. ......... ......+..++++|+|+++++. +
T Consensus 82 -l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~---------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 82 -LIACSHGLRRLERQREPGGE-WESIADSFE---------------------GKKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp -EEEEETTTTEEEEECSTTCC-EEEEECEET---------------------TEECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred -EEEEecCCCeEEEEcCCCCc-EEEEeeccC---------------------CCCCCCCCCEEECCCCCEEEECCccccc
Confidence 77777677899999986421 100000000 0011356789999999988873 2
Q ss_pred ------------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-Ccee---EEeccCC
Q 008939 319 ------------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKV---VAWGEGH 382 (548)
Q Consensus 319 ------------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~---~~~~~~h 382 (548)
..+.|..++.. ++.. .+..+......++|+|+++.|++.+.++.|.+||+. +++. ...+..+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 216 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE 216 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS
T ss_pred cccccccccccCCCcEEEEECCC-CCEE-EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC
Confidence 13456666655 4433 344556678899999999988777788999999997 4544 2333445
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
...+.++++++ +| +++++. ++.|.+||.. ++.+..+
T Consensus 217 ~~~p~~i~~d~-------~G------~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 217 PGKTDGLRVDA-------GG------LIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp SSCCCSEEEBT-------TS------CEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred CCCCCeEEECC-------CC------CEEEEc--CCeEEEECCC-CCEEEEE
Confidence 66678899999 88 555554 8899999986 5554433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-12 Score=122.58 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=143.8
Q ss_pred CCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----CcEEEE
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----GDVYSV 203 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----g~I~iw 203 (548)
+...+..++|+++|++++++..+ .|++||.+++. ...........+.+++|+|+ +.++++...+ +.|++|
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~d---g~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKD---GRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTT---SCEEEEECTTSSSCCEEEEE
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCCCCcceEEECCC---CcEEEEeCCCCCCCceEEEE
Confidence 34456789999999977776655 89999988643 33222235678999999998 6666655555 589999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCcccccccc
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
|.+.. .+.... ... .....+.+++++|++. ++++... .+.|+.||.... .
T Consensus 118 d~~~~------~~~~~~--~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~-~------------ 173 (333)
T 2dg1_A 118 TENGD------NLQDII--EDL--STAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-T------------ 173 (333)
T ss_dssp CTTSC------SCEEEE--CSS--SSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-C------------
T ss_pred eCCCC------EEEEEE--ccC--ccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCC-E------------
Confidence 87652 111000 000 1345789999999997 6665543 244555544321 0
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC-CeEEEe--------eeecCCceEEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK-EQLICG--------GKSYYGALLCC 347 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~-~~~~~~--------~~~~~~~v~~l 347 (548)
+..+..+...+..++|+|+++.|+.+ ..++.|.+||+.+ ++.+.. +..+ ..+..+
T Consensus 174 --------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 174 --------------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp --------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred --------------EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 11111122457889999999866555 4578999999964 332211 1111 367889
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCC------CeEEEEEec
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNS------WVSGVAFDS 393 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~------~V~~v~~~p 393 (548)
+++++|+++++...++.|.+||.+ ++.+..+..+.. .+.+++|+|
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECC
Confidence 999999988888788999999984 666655543432 689999998
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-12 Score=126.21 Aligned_cols=247 Identities=10% Similarity=0.029 Sum_probs=164.6
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeeccc
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQ 210 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~ 210 (548)
.+..+.++.+.-+++....+.|.+||..+.+ .+..+. ....+..++++++ + .|+++. .++.|.+||+.+.
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~--~~~~i~-~~~~p~~i~~~~~---g-~lyv~~~~~~~v~~iD~~t~-- 115 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFK--EVGRIT-GFTSPRYIHFLSD---E-KAYVTQIWDYRIFIINPKTY-- 115 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCC--EEEEEE-CCSSEEEEEEEET---T-EEEEEEBSCSEEEEEETTTT--
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccE--EEEEcC-CCCCCcEEEEeCC---C-eEEEEECCCCeEEEEECCCC--
Confidence 3455667543333333334599999999854 777775 4568999999887 5 466665 7899999998762
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
++........ ..........|++ .++. ++++.. .++.|.+||+.+..
T Consensus 116 ----~~~~~i~~g~-~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v~viD~~t~~------------------------- 163 (328)
T 3dsm_A 116 ----EITGYIECPD-MDMESGSTEQMVQ-YGKY-VYVNCWSYQNRILKIDTETDK------------------------- 163 (328)
T ss_dssp ----EEEEEEECTT-CCTTTCBCCCEEE-ETTE-EEEEECTTCCEEEEEETTTTE-------------------------
T ss_pred ----eEEEEEEcCC-ccccCCCcceEEE-ECCE-EEEEcCCCCCEEEEEECCCCe-------------------------
Confidence 2222222111 0011124566777 3433 444443 48899999988621
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECC----------CeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRD----------GYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILT 358 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----------g~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s 358 (548)
.+..+.. ......++++|+|++++++..+ +.|.++|..+++.+..+... ......++++|++++|++
T Consensus 164 -~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 164 -VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp -EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred -EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 1111111 1335678999999877766554 78999999999887666532 236889999999999888
Q ss_pred EeCCCeEEEEECCCceeEEe--ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE----eCCCeEEEEECCCCeEEe
Q 008939 359 GGEDDLVQVWSMEDRKVVAW--GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV----GQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 359 gs~dg~I~vwd~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~----~~Dg~i~lwd~~~~~~~~ 432 (548)
+.. .|.+||..+++.... +..+......++++| ++. +++++. ..++.|.+||.. ++.+.
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp-------~~g-----~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP-------NNG-----EVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT-------TTC-----CEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC-------CCC-----eEEEEcccccccCCEEEEECCC-CCEEE
Confidence 765 899999998875421 222246788999998 542 566666 678999999998 88888
Q ss_pred eeec
Q 008939 433 PLRR 436 (548)
Q Consensus 433 ~~~~ 436 (548)
.+..
T Consensus 307 ~i~~ 310 (328)
T 3dsm_A 307 EFYV 310 (328)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.4e-13 Score=146.23 Aligned_cols=247 Identities=11% Similarity=0.010 Sum_probs=158.7
Q ss_pred CCCCceeEEeCCCCCEEEEec-----CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc---
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV-----GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD--- 199 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~-----~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~--- 199 (548)
|...+..++|+|||++|++.. .+ .|++||+.++. .+............++|+|+ +..|+.+..+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~wspD---g~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSKVDVIEGGKYATPKWTPD---SKGFYYEWLPTDPSI 193 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCSSCCBSCCTTCCCEECTT---SSEEEEEECCCCTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--CcCCcccCcccccceEEecC---CCEEEEEEecCCCCC
Confidence 445677899999999999632 23 89999999865 32111122222368899999 778988888765
Q ss_pred ----------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC----cEEEEEcCCCCC
Q 008939 200 ----------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----NLYVYEKSKDGA 265 (548)
Q Consensus 200 ----------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----~v~vwd~~~~~~ 265 (548)
|++|++.+... ...++.. ...+...+..+.|+|+|+ +|+..+.++ .|++|+...
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~--~~~lv~~------~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~--- 261 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPS--KDTVVHE------RTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGE--- 261 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGG--GCEEEEC------CCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTC---
T ss_pred ccccCCCCCEEEEEECCCCch--hceEEEe------cCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCC---
Confidence 99999876211 1112111 111446788999999998 555555444 555554322
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC----CCeEEEEeCCCCeE---EEeee
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR----DGYLRVFDYSKEQL---ICGGK 338 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~v~vwd~~~~~~---~~~~~ 338 (548)
.....+..+...+....| +++. |+..+. ++.|.+||+.+++. ...+.
T Consensus 262 ------------------------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 262 ------------------------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp ------------------------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred ------------------------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 112333344455666666 5666 554443 58899999987652 22233
Q ss_pred ec-CCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEE-
Q 008939 339 SY-YGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV- 414 (548)
Q Consensus 339 ~~-~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~- 414 (548)
.+ ...+..++|+ ++.++++...|+..+||.++ +++.+..+..+ ...|..+.++| |+. .++++.
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~-------d~~-----~l~~~~s 382 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLE-------DLD-----DAYYVFT 382 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCT-------TCS-----EEEEEEE
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCC-------CCC-----EEEEEEc
Confidence 23 4467888888 77788889999988888665 35556666655 66777888888 772 233333
Q ss_pred --eCCCeEEEEECCCCeEE
Q 008939 415 --GQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 415 --~~Dg~i~lwd~~~~~~~ 431 (548)
...+.|.+||+.+++..
T Consensus 383 s~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp ETTEEEEEEEEETTTCCEE
T ss_pred CCCCCCEEEEEECCCCcEE
Confidence 24578999999988743
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=128.24 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=147.0
Q ss_pred CceeEEeCCCCCEEEEecC----C--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--------
Q 008939 132 SMTNTNFDGKGTYIIFNVG----D--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-------- 197 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~----d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-------- 197 (548)
.+..+.|+|||+.|++... . .|++||+.++. .. .+...+. +..++|+|+ +..|+.+..+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--~~-~l~~~~~-~~~~~wspd---g~~l~~~~~~~~~~~~~~ 132 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--SK-KILEAKN-IRSLEWNED---SRKLLIVGFKRREDEDFI 132 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--EE-EEEEESE-EEEEEECTT---SSEEEEEEECCCC-----
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--eE-EEEcCCC-ccceeECCC---CCEEEEEEccCCCcCCcE
Confidence 3567899999999998653 2 58888887643 32 3332334 899999999 7778877642
Q ss_pred -------------------CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC-----
Q 008939 198 -------------------GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG----- 253 (548)
Q Consensus 198 -------------------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg----- 253 (548)
..|++||+... + ...... .. .+..+.|+|++ +++++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----~-~~~~l~-------~~-~~~~~~~spdg--~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----E-VIEEFE-------KP-RFSSGIWHRDK--IVVNVPHREIIPQY 196 (347)
T ss_dssp ----CCCC---------CEEEEEEEETTTT-----E-EEEEEE-------EE-TTCEEEEETTE--EEEEEECCCSSCCS
T ss_pred EEcccceeecCcccccCccceEEEEECCCC-----e-EEeeec-------CC-CcccccCCCCe--EEEEEecccccccc
Confidence 56888888651 1 101111 12 57789999998 666665542
Q ss_pred --cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC--------CeE
Q 008939 254 --NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD--------GYL 323 (548)
Q Consensus 254 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d--------g~v 323 (548)
...||.++. +. +..+..+ ..+..+ +|||++|+.++.+ ..|
T Consensus 197 ~~~~~l~~~d~-~~--------------------------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 197 FKFWDIYIWED-GK--------------------------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp SCCEEEEEEET-TE--------------------------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred cccccEEEeCC-Cc--------------------------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence 344554442 11 1112222 334444 8999998888754 368
Q ss_pred EEEeCCCCeEEEeeeecCCceEE-EEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLC-CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDG 402 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg 402 (548)
.+|| +++.......+...+.. +.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+|
T Consensus 247 ~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--------- 311 (347)
T 2gop_A 247 YIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--------- 311 (347)
T ss_dssp EEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS---------
T ss_pred EEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC---------
Confidence 8888 56655545556677886 9999 88 89999999999999 8866654444 4577899999974
Q ss_pred CccceeEEEEEEeCCCeE-EEEECCCCe
Q 008939 403 TAETVMYRFGSVGQDTRL-LLWDLEMDE 429 (548)
Q Consensus 403 ~~~~~~~~l~s~~~Dg~i-~lwd~~~~~ 429 (548)
.++++++.++.. .||.+. ++
T Consensus 312 ------~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 312 ------IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp ------SEEEEEECSSSCCEEEEES-SS
T ss_pred ------cEEEEEcCCCChHHheEeC-Cc
Confidence 256666666654 777766 54
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-12 Score=119.44 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=167.5
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceee
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVG 218 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~ 218 (548)
.+++|++++.+ .|++||.++++ .+..+..+. ..+.++++.|+ +++|+ +.++.|+.||. + ++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~pd---G~ilv--s~~~~V~~~d~-~-----G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE--IVWEYPLEKGWECNSVAATKA---GEILF--SYSKGAKMITR-D-----GRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE--EEEEEECCTTCCCCEEEECTT---SCEEE--ECBSEEEEECT-T-----SCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCe--EEEEeCCCccCCCcCeEECCC---CCEEE--eCCCCEEEECC-C-----CCEEEE
Confidence 45677777776 99999998865 777777654 47899999998 76666 45778999987 3 233322
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEEEeC-CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA-DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
... .....+.++.+.|++. ++++.+. ++.|..+|. .++....+...... ..
T Consensus 71 -~~~-----~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~-------------------~~ 122 (276)
T 3no2_A 71 -IAA-----PAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM--KGEVLSKTEFETGI-------------------ER 122 (276)
T ss_dssp -EEC-----CTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT--TSCEEEEEEECCSC-------------------SS
T ss_pred -EcC-----CCCccccccEECCCCC-EEEEecCCCCEEEEEeC--CCCEEEEEeccCCC-------------------Cc
Confidence 111 0134678899999999 7777766 666766664 34332222110000 00
Q ss_pred cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 298 CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+......+++.++|++|++...++.|.+||.+ ++.+..+... ....++...++|++++++..++.|..+|.++++.+.
T Consensus 123 ~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 123 PHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp GGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred ccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 11234456788999999999999999999998 9999888754 456678889999999999888899999999999887
Q ss_pred eccCCC------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------CeEEEEEC-CCCeEEeeeecC
Q 008939 378 WGEGHN------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------TRLLLWDL-EMDEIVVPLRRG 437 (548)
Q Consensus 378 ~~~~h~------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------g~i~lwd~-~~~~~~~~~~~~ 437 (548)
.+..+. ..+..+...+ +| .++++..+. +..+++++ .+++.+.++...
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~-------~G------~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQ-------NG------GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECT-------TS------CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred EecCCCCCCccccccccceEcC-------CC------CEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 775332 3478888888 88 566665321 23456666 577887777653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=118.72 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=161.7
Q ss_pred CceeEEeCCCCCEEEE-------ecC-CeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCCCceEEEEEcCC
Q 008939 132 SMTNTNFDGKGTYIIF-------NVG-DAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKDGHDLLIGLNSG 198 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~-------~~~-d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~~~~l~~g~~dg 198 (548)
.+..++|+++|.++++ ... ..|++||..++. +..+.. ....+.+++++++ +..|+++...+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~~~~---~g~l~v~~~~~ 92 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRD---ANQLFVADMRL 92 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSS---SSEEEEEETTT
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EEEEEecccCCCCCCCceEEEecC---CCcEEEEECCC
Confidence 4568899999988877 444 489999987644 333332 3357899999987 34577777666
Q ss_pred cEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCC---------------CcEEEEEcCC
Q 008939 199 DVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD---------------GNLYVYEKSK 262 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d---------------g~v~vwd~~~ 262 (548)
.|.+||... + +... .. .........+.++++.+++. ++++...+ +.|+.||..
T Consensus 93 ~l~~~d~~g------~-~~~~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 93 GLLVVQTDG------T-FEEIAKK--DSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEEEEETTS------C-EEECCSB--CTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred CEEEEeCCC------C-EEEEEec--cCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 898998652 1 1110 00 00011235688999999997 66665544 455555533
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC----CCCCEEEEE-ECCCeEEEEeCC-CCeE---
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----TDGTYLATV-GRDGYLRVFDYS-KEQL--- 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----p~g~~l~s~-~~dg~v~vwd~~-~~~~--- 333 (548)
+. +..+..+......++|+ |+++.|+.+ ..++.|.+||+. +++.
T Consensus 162 -g~--------------------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 162 -GQ--------------------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp -SC--------------------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred -CC--------------------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 11 11111122456789999 999766655 467899999986 4542
Q ss_pred --EEeeeecC-CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-
Q 008939 334 --ICGGKSYY-GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY- 409 (548)
Q Consensus 334 --~~~~~~~~-~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~- 409 (548)
...+..+. ..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+| +| .
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-------dg------~~ 281 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-------QT------KT 281 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-------TS------SE
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-------CC------CE
Confidence 22233333 5678899999999888887889999999987777666666778899999999 88 4
Q ss_pred EEEEEeCCCeEEEEECCCC
Q 008939 410 RFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~ 428 (548)
++++...++.|..||+...
T Consensus 282 l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 282 IFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEETTTTEEEEEECSSC
T ss_pred EEEEeCCCCeEEEEeCCCC
Confidence 5556666789999998753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=142.81 Aligned_cols=230 Identities=8% Similarity=-0.019 Sum_probs=144.2
Q ss_pred CCCCEEEEecCC------eEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEEEc-----CCcEEE
Q 008939 140 GKGTYIIFNVGD------AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIGLN-----SGDVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g~~-----dg~I~i 202 (548)
++|+++++...+ .+++.+...+. ...-+.. +...+..++|+|+ +.+|+.... +.+|++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPD---G~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWD---GKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTT---SSEEEEEEEETTCSCCEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCC---CCEEEEEECCCCCceEEEEE
Confidence 688888775432 34444444332 2222211 1225788999999 777875433 357999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-------------EEEEEcCCCCCCCCC
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-------------LYVYEKSKDGAGDSS 269 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-------------v~vwd~~~~~~~~~~ 269 (548)
||+.+. +.+... . ........++|+||++ .|+.++.|.. |++|++.+....
T Consensus 152 ~dl~tg-----~~~~~~-~------~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--- 215 (695)
T 2bkl_A 152 IDVDSG-----EWSKVD-V------IEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--- 215 (695)
T ss_dssp EETTTC-----CBCSSC-C------BSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---
T ss_pred EECCCC-----CCcCCc-c------cCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---
Confidence 999862 211000 0 0111226899999999 7777777665 999998763110
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC----eEEEEeCCCCeEEEeeeecCCceE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----YLRVFDYSKEQLICGGKSYYGALL 345 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~v~ 345 (548)
...+.....|...+..+.|+|||++|+..+.++ .|.+||..+++.. .+..+...+.
T Consensus 216 -------------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~ 275 (695)
T 2bkl_A 216 -------------------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKY 275 (695)
T ss_dssp -------------------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCE
T ss_pred -------------------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceE
Confidence 001111122345788999999999998887666 6777777655543 3444555666
Q ss_pred EEEEccCCCEEEEEeC----CCeEEEEECCCcee---EEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 346 CCAWSMDGKYILTGGE----DDLVQVWSMEDRKV---VAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 346 ~l~~spdg~~l~sgs~----dg~I~vwd~~~~~~---~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
...| ++|. |+..+. ++.|.+||+++++. ...+..+ ...|..++|+ ++ .++++...|
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~------~lv~~~~~d 339 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--------GG------HLSLEYLKD 339 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--------TT------EEEEEEEET
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--------CC------EEEEEEEEC
Confidence 6666 6676 554443 57899999987653 3333333 4567888886 44 688999999
Q ss_pred CeEEEEECC
Q 008939 418 TRLLLWDLE 426 (548)
Q Consensus 418 g~i~lwd~~ 426 (548)
+..+||.+.
T Consensus 340 g~~~l~~~~ 348 (695)
T 2bkl_A 340 ATSEVRVAT 348 (695)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 998888665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-10 Score=122.74 Aligned_cols=296 Identities=10% Similarity=0.019 Sum_probs=191.5
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++...++.|.++|..+ .+++.... ....+..+.|+|+++ ++++++.|+.|.+||+....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t------~~v~~~i~-------~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t--- 229 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGST------YEIKTVLD-------TGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKE--- 229 (567)
T ss_dssp GEEEEEETTTTEEEEEETTT------CCEEEEEE-------CSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSS---
T ss_pred ceEEEEeCCCCeEEEEECCC------CeEEEEEe-------CCCCccceEECCCCC-EEEEEcCCCeEEEEECCCCC---
Confidence 44556666788999999876 23333222 233566999999999 88888999999999985110
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC----CCCCEEEEEE-CCCeEEEEeCCCCeEEEeeee---
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS----TDGTYLATVG-RDGYLRVFDYSKEQLICGGKS--- 339 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----p~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~--- 339 (548)
...+..+... .....++|+ |||++++++. .++.|.|+|..+.+.+..+..
T Consensus 230 ---------------------~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~ 287 (567)
T 1qks_A 230 ---------------------PTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 287 (567)
T ss_dssp ---------------------CCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred ---------------------CcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence 1122222222 346789999 6999888766 459999999999988776542
Q ss_pred -------c-CCceEEEEEccCCCE-EEEEeCCCeEEEEECCCcee--EEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 340 -------Y-YGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKV--VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 340 -------~-~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
| ...+..+..++++.. ++...++|.|.++|..+.+. +..+. .......+.|+| ||.
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-------dgr----- 354 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-------SHR----- 354 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-------TSC-----
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-------CCC-----
Confidence 1 125778888988765 44555679999999987532 22332 445677899999 882
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeec-C---CCCCCce-ecCCCCccccCCeeeeccc-CCCCceeecCC-------C
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRR-G---PLGGSPT-FSTGSQSAHWDNVCPVGTL-QPAPSMRDVPK-------L 475 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~d~~~~~g~~-~~~~~~~d~~~-------~ 475 (548)
++++++..++.|.++|+.+++++..+.. . ++..... +.+++. ....+..+ +..+.++|... +
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g-----~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG-----PVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE-----EEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC-----cEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 3445555789999999999998877765 2 2222222 344321 11122222 35677777765 6
Q ss_pred CceEEeecCCCCeeEEEEeCCe--EEEEEC-------CCeEEEEeCCCC-----Cc--cccC---------CCCcEE--E
Q 008939 476 SPLVAHRVHTEPLSGLIFTQES--VLTVCR-------EGHIKIWMRPGV-----AE--SQSS---------SSETVL--S 528 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd~--l~t~s~-------Dg~I~iW~~~~~-----~~--~~~~---------~~~~v~--~ 528 (548)
+.+..+......-..|.++|++ |..... ...|.++|+.+. .. .... ....+. .
T Consensus 430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (567)
T 1qks_A 430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE 509 (567)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence 6777777554443457789984 444442 469999998755 21 1110 112233 8
Q ss_pred ecCCCCceEeee
Q 008939 529 TSSKDKPLLSSK 540 (548)
Q Consensus 529 ~s~d~~~l~s~~ 540 (548)
+++||+.|..+.
T Consensus 510 ~~~~G~~~~~s~ 521 (567)
T 1qks_A 510 FNKDGTEVWFSV 521 (567)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 899999877763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-10 Score=106.64 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=161.0
Q ss_pred CCCCCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEec--CCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 128 SSSTSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIHF--SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 128 ~h~~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~--~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.....+..+.++++|.+.+.... +.|.+||.. +. +..+.. ....+..++++++ +.++++...++.|..||
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~---~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR---IKEFEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLS 89 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEEC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc---eEEEECCCCCCcceeEEECCC---CCEEEEecCCCeEEEEC
Confidence 34567788999999998887755 499999987 32 333322 2357889999887 65555544578899988
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
... + ... .. .. .....+.++++.+++. ++++...++.|..||.. +... .+.
T Consensus 90 ~~g------~-~~~-~~--~~--~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~-~~~------------- 140 (300)
T 2qc5_A 90 KKG------G-FTE-YP--LP--QPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD--GTIY-EYD------------- 140 (300)
T ss_dssp TTS------C-EEE-EE--CS--STTCCEEEEEECSTTC-EEEEETTTTEEEEECTT--SCEE-EEE-------------
T ss_pred CCC------C-eEE-ec--CC--CCCCCCccceECCCCC-EEEEccCCCeEEEECCC--CCEE-Ecc-------------
Confidence 652 1 110 11 00 0235688999999887 67766667889988865 2110 000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe-eeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG-GKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
+......+.++++.++++++++...++.|.+||. +++.... .......+..+++.++|+++++....+
T Consensus 141 ----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 141 ----------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp ----------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred ----------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 0011256889999999996666656789999998 5554432 223445688999999998777776778
Q ss_pred eEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 364 LVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.|.+||. +++.... +..+...+.++++++ +| +++++...++.|..||..
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-------~g------~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGK-------NS------EIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECS-------TT------CEEEEETTTTEEEEECTT
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECC-------CC------CEEEeccCCCeEEEECCC
Confidence 8999998 4544332 334567789999998 88 566666667899999983
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-10 Score=109.14 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=137.7
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.+++++++ +..+++...++.|.+||... .... ... . .....+.++++.+++. ++++...+
T Consensus 14 ~~~~~~i~~d~~---g~l~v~~~~~~~v~~~d~~~-------~~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~ 77 (299)
T 2z2n_A 14 DTGPYGITVSDK---GKVWITQHKANMISCINLDG-------KITE-YPL-P---TPDAKVMCLTISSDGE-VWFTENAA 77 (299)
T ss_dssp SCCEEEEEECTT---SCEEEEETTTTEEEEECTTC-------CEEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTT
T ss_pred CCCccceEECCC---CCEEEEecCCCcEEEEcCCC-------CeEE-ecC-C---cccCceeeEEECCCCC-EEEeCCCC
Confidence 357889999987 65555444478899998652 1111 000 0 1246788999999988 67766668
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
+.|+.||... .. ..+. .......+.+++++++++++++...++.|.+||. +++
T Consensus 78 ~~i~~~~~~g--~~-~~~~-----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 78 NKIGRITKKG--II-KEYT-----------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TEEEEECTTS--CE-EEEE-----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred CeEEEECCCC--cE-EEEe-----------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 8899998652 10 0000 0011256889999999988777777889999998 555
Q ss_pred EEEe-eeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEe-ccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LICG-GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAW-GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~~-~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.... .......+..+++.++|+++++...++.|.+||. +++.... +..+...+.++++++ +| .+
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-------~g------~l 196 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGN-------DD------AL 196 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------TS------SE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC-------CC------CE
Confidence 4322 2334457899999999988877777889999999 6655433 334556788999998 88 56
Q ss_pred EEEEeCCCeEEEEECCCCeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+++...++.|.+||. +++.
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEETTTTEEEEECT-TCCE
T ss_pred EEEccCCceEEEECC-CCcE
Confidence 666666889999998 6553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=134.25 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred CceEEEecCCCCCCceEEEEEcC-C----cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNS-G----DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~d-g----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..++|+|+ +.+|+.+..+ | +|++||+.+. +.+.... +...+..++|+|| + .|+.+
T Consensus 164 ~~~~~~~SPD---G~~la~~~~~~G~e~~~i~v~dl~tg-----~~~~~~~--------~~~~~~~~~wspD-~-~l~~~ 225 (741)
T 1yr2_A 164 ALDAWAASDD---GRLLAYSVQDGGSDWRTVKFVGVADG-----KPLADEL--------KWVKFSGLAWLGN-D-ALLYS 225 (741)
T ss_dssp EEEEEEECTT---SSEEEEEEEETTCSEEEEEEEETTTC-----CEEEEEE--------EEEESCCCEESTT-S-EEEEE
T ss_pred EEEeEEECCC---CCEEEEEEcCCCCceEEEEEEECCCC-----CCCCccC--------CCceeccEEEECC-C-EEEEE
Confidence 4678899999 7788877665 3 5999999862 2211111 1223467899999 7 66666
Q ss_pred eCCCc--------------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee--cCCCeEEEEECCCCCE
Q 008939 250 HADGN--------------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI--CQGSINSIAFSTDGTY 313 (548)
Q Consensus 250 ~~dg~--------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~ 313 (548)
..|+. |++|++.+... .....+.. +...+..+.|+|||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------------------------~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQS------------------------ADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp ECCCC--------CCCCCEEEEEETTSCGG------------------------GCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred EecCcccccccccCCCCCEEEEEECCCCch------------------------hCEEEeccCCCCeEEEEEEECCCCCE
Confidence 65543 88888765210 00111111 2235789999999999
Q ss_pred EEEEECCC-----eEEEEeCCCC--eEEEeeeecCCceEEEEEccCCCEEEEEeCC----CeEEEEECCCc--eeEEecc
Q 008939 314 LATVGRDG-----YLRVFDYSKE--QLICGGKSYYGALLCCAWSMDGKYILTGGED----DLVQVWSMEDR--KVVAWGE 380 (548)
Q Consensus 314 l~s~~~dg-----~v~vwd~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d----g~I~vwd~~~~--~~~~~~~ 380 (548)
|+..+.++ .|.+||+.++ +....+..+...+... ++|+|+.|+..+.+ +.|.+||++++ +....+.
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 98877554 8999999876 3133444455555555 35899988887764 45999999874 3444445
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
.+...+..+.|. ++ .++++...|+..+||.+.
T Consensus 361 ~~~~~l~~~~~~--------~~------~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 361 ESKDNLESVGIA--------GN------RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CCSSEEEEEEEE--------BT------EEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEE--------CC------EEEEEEEECCEEEEEEEe
Confidence 555566677775 33 588888999988877654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-11 Score=117.99 Aligned_cols=261 Identities=10% Similarity=-0.024 Sum_probs=167.2
Q ss_pred CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccc
Q 008939 197 SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 197 dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
++.|.+||.++. ++...................+.+.. +. ++++...++.|.+||..+.
T Consensus 16 ~~~l~~~d~~t~------~~~~~i~~~~n~~~lg~~~~~i~~~~-~~-lyv~~~~~~~v~viD~~t~------------- 74 (328)
T 3dsm_A 16 NATLSYYDPATC------EVENEVFYRANGFKLGDVAQSMVIRD-GI-GWIVVNNSHVIFAIDINTF------------- 74 (328)
T ss_dssp CBEEEEEETTTT------EEECSHHHHHHSSCCBSCEEEEEEET-TE-EEEEEGGGTEEEEEETTTC-------------
T ss_pred CceEEEEECCCC------EEhhhhHhhhcCcccCccceEEEEEC-CE-EEEEEcCCCEEEEEECccc-------------
Confidence 678999998762 11111100000111234567787743 33 6777777899999999862
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecC-----CceEEEEEcc
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYY-----GALLCCAWSM 351 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~sp 351 (548)
+.+..+. .......++++++++++++...++.|.+||..+++.+..+.... .....+++ .
T Consensus 75 -------------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~ 139 (328)
T 3dsm_A 75 -------------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y 139 (328)
T ss_dssp -------------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred -------------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence 1222222 22568899999988544444378999999999998877665432 14556777 4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC----------CeE
Q 008939 352 DGKYILTGG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD----------TRL 420 (548)
Q Consensus 352 dg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D----------g~i 420 (548)
+++++++.. .++.|.+||+++++.+..+.. ......++++| +| ++++++..+ +.|
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~-------dG------~l~v~~~~~~~~~~~~~~~~~v 205 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDK-------YN------KMWTITDGGYEGSPYGYEAPSL 205 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECT-------TS------EEEEEBCCBCTTCSSCBCCCEE
T ss_pred CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcC-------CC------CEEEEECCCccCCccccCCceE
Confidence 444444443 488999999999988877763 33456889999 88 666665544 789
Q ss_pred EEEECCCCeEEeeeecC--CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE--eecCCCCeeEEEEeCC
Q 008939 421 LLWDLEMDEIVVPLRRG--PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA--HRVHTEPLSGLIFTQE 496 (548)
Q Consensus 421 ~lwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~--~~~h~~~V~~l~fspd 496 (548)
.+||..+++....+... .....+++++++. .+.+.. ..+..+|..+.+.... +..+......|+++|+
T Consensus 206 ~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~------~lyv~~--~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 206 YRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD------TLYWIN--NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp EEEETTTTEEEEEEECCTTCCCEEEEECTTSC------EEEEES--SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred EEEECCCCeEEEEEecCCCCCceeEEEecCCC------EEEEEc--cEEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 99999999988777642 2455677777652 221111 1566677766554211 1112456889999984
Q ss_pred -e--EEEE----ECCCeEEEEeCCCC
Q 008939 497 -S--VLTV----CREGHIKIWMRPGV 515 (548)
Q Consensus 497 -~--l~t~----s~Dg~I~iW~~~~~ 515 (548)
. +++. ..++.|.+||..+.
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred CCeEEEEcccccccCCEEEEECCCCC
Confidence 3 4555 57899999998743
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-11 Score=119.14 Aligned_cols=259 Identities=17% Similarity=0.144 Sum_probs=174.3
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.++++|||+++.++. .+.|.+||..+.. .+..+.... ..+..++|+|+ +++|+++..
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~spD---Gk~lyVan~ 156 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPD---GKTLLFYQF 156 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTT---SSEEEEEEC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcCC---CCEEEEEEc
Confidence 499999999887754 2489999999844 788876542 36889999999 788888864
Q ss_pred --CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.++|+.+ .++..... ... |..+.|.+...|++.+.||.+.+.++...+.......
T Consensus 157 ~~~~~VsVID~~t------~~vv~tI~--------v~g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--- 217 (386)
T 3sjl_D 157 SPAPAVGVVDLEG------KAFKRMLD--------VPD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT--- 217 (386)
T ss_dssp SSSCEEEEEETTT------TEEEEEEE--------CCS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---
T ss_pred CCCCeEEEEECCC------CcEEEEEE--------CCC--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---
Confidence 68899999987 33333322 111 1233455544788888999999999876333211000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeE-EEEEC-CCCCEEEEEECCCeEEEEeCCCCe--EEEeee----------ec
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSIN-SIAFS-TDGTYLATVGRDGYLRVFDYSKEQ--LICGGK----------SY 340 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s-p~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~----------~~ 340 (548)
..+. .....+. ...|. ++|++++ .+.+|.|.+.|+..+. .+..+. -.
T Consensus 218 --~~~~----------------~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 218 --EVFH----------------PEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp --CCCS----------------CTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred --ceec----------------cccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 0000 0001121 23564 6776544 6668999999997654 332222 01
Q ss_pred CCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 341 YGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
.+....++++++++.|++... .+.|.++|+.+++.+..+.. ...+..|+|+| |+. ..+
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~-------D~~----~~l 346 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ-------DEK----PLL 346 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECS-------SSS----CEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECC-------CCC----eEE
Confidence 123455788999998887643 25799999999999888762 34678999999 881 023
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
+++...++.|.++|..+++.+.++........+.++++
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 44456699999999999999999988666666666654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-11 Score=116.09 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=143.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC-cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN-SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAG 266 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~ 266 (548)
++.|++++.++.|++||.++ ++.+..... +. ..+.++.+.|+++ +|+ +.++.|+.||. + ++.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~t-----G~~~w~~~~-------~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~-G~~ 67 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDT-----KEIVWEYPL-------EKGWECNSVAATKAGE-ILF--SYSKGAKMITR-D-GRE 67 (276)
T ss_dssp CEEEEECTTCSEEEEEETTT-----TEEEEEEEC-------CTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-T-SCE
T ss_pred CcEEEeeCCCCEEEEEECCC-----CeEEEEeCC-------CccCCCcCeEECCCCC-EEE--eCCCCEEEECC-C-CCE
Confidence 67899999999999999765 343332211 22 4678999999998 777 45678999987 3 322
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeeee-----
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGKS----- 339 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~----- 339 (548)
+..+..+ ...+.++.+.++|++|++.+. ++.|..+|. +++.+..+..
T Consensus 68 -------------------------~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 68 -------------------------LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp -------------------------EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred -------------------------EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 2233322 246788999999999999887 778888886 6777766542
Q ss_pred -cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 340 -YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 340 -~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
+......+++.++|++|++...++.|..||.+ ++.+..+..+ ..+..+.+.+ +| ..++++..++
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~-------~g------~~~v~~~~~~ 186 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLD-------NG------DCLVACGDAH 186 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECT-------TS------CEEEECBTTS
T ss_pred cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcC-------CC------CEEEEeCCCC
Confidence 11234556789999999999999999999998 9888887754 4556677787 88 6788888888
Q ss_pred eEEEEECCCCeEEeeeec
Q 008939 419 RLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~ 436 (548)
.|..+|..+++.+..+..
T Consensus 187 ~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 187 CFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEECTTTCCEEEEEEG
T ss_pred eEEEEeCcCCcEEEEecC
Confidence 999999999999988864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-10 Score=111.35 Aligned_cols=242 Identities=14% Similarity=0.029 Sum_probs=163.2
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.++|||+++.++. ++.|.+||..+. +.+..+... ...+..++|+|+ +++|+++..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spD---G~~l~v~n~ 144 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPN---NADLLFFQF 144 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCC---CCEEEEEec
Confidence 799999999998864 348999999874 367666543 245778999999 788998874
Q ss_pred --CCcEEEEEeeecccccccceeee-eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGA-HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
++.|.++| .+ .++... .. .. .|+.+.|++...+++.+.||.+.++|. .. ........
T Consensus 145 ~~~~~v~viD-~t------~~~~~~~i~-------~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g-~~~~~~~~- 204 (373)
T 2mad_H 145 AAGPAVGLVV-QG------GSSDDQLLS-------SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AG-GAAGAGLV- 204 (373)
T ss_pred CCCCeEEEEE-CC------CCEEeEEcC-------CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CC-cEEEEEec-
Confidence 47899999 76 222222 11 01 235677887767888889999999999 52 21100000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeee----------c
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKS----------Y 340 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~----------~ 340 (548)
.+. + ....+ .....|.+++..++..+..+.+.+.|+..+. .+..+.. .
T Consensus 205 ----------------~~~--~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~ 265 (373)
T 2mad_H 205 ----------------GAM--L-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR 265 (373)
T ss_pred ----------------ccc--c-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccccee
Confidence 000 0 00011 1234566665555555578899999997553 2222211 1
Q ss_pred CCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-
Q 008939 341 YGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY- 409 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~- 409 (548)
......++++||++.|++... .+.|.++|+.+++.+.++. -.....+++|+| || +
T Consensus 266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~-------Dg------~~ 331 (373)
T 2mad_H 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-------DG------GP 331 (373)
T ss_pred cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECC-------CC------Ce
Confidence 123445789999998887653 3579999999999988886 344688999999 98 5
Q ss_pred EEEEEe-CCCeEEEEECCCCeEEeee
Q 008939 410 RFGSVG-QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 410 ~l~s~~-~Dg~i~lwd~~~~~~~~~~ 434 (548)
+++++. .++.|.+||+.+++.+..+
T Consensus 332 ~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEEcCCCCeEEEEECCCCCEEeee
Confidence 666666 5899999999999988773
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-11 Score=133.23 Aligned_cols=247 Identities=14% Similarity=0.066 Sum_probs=156.5
Q ss_pred CCCceeEEeCCCCCEEEEecCC------eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCc----
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD------AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD---- 199 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d------~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~---- 199 (548)
...+..++|+|||++|++...+ .|++||+.++. .+.. .........++|+|+ + .|+.+..++.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQ 234 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-S---EEEEEECCCC----
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEECC-C---EEEEEEecCccccc
Confidence 3467789999999999986432 69999999865 3332 222223357889997 4 4666665543
Q ss_pred ----------EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-----CcEEEEEcCCCC
Q 008939 200 ----------VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-----GNLYVYEKSKDG 264 (548)
Q Consensus 200 ----------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-----g~v~vwd~~~~~ 264 (548)
|++|++.+.. ....++. .. ..+...+..+.|+|+|+ +|+....+ ..|++||+....
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~--~~~~lv~----~~--~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~ 305 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQ--SADQPVF----AT--PELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGK 305 (741)
T ss_dssp ----CCCCCEEEEEETTSCG--GGCEEEE----CC--TTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTE
T ss_pred ccccCCCCCEEEEEECCCCc--hhCEEEe----cc--CCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCC
Confidence 8899886521 1111111 11 11234588999999999 66655543 389999987520
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC----CeEEEEeCCCC--eEEEeee
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD----GYLRVFDYSKE--QLICGGK 338 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d----g~v~vwd~~~~--~~~~~~~ 338 (548)
. .....+..+...+.... +|+++.|+..+.+ +.|.+||+.++ +....+.
T Consensus 306 ~------------------------~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 306 I------------------------GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp E------------------------CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred C------------------------cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 0 00122222333444443 4888888887764 45999999874 3343444
Q ss_pred ecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-CceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEE---
Q 008939 339 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-DRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS--- 413 (548)
Q Consensus 339 ~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s--- 413 (548)
.+...+..+.|. ++.++++...|+..+||.++ +++.+..+.. +...|..+.++| |+. .++++
T Consensus 361 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~-------d~~-----~l~~~~ss 427 (741)
T 1yr2_A 361 ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRP-------GDR-----HAYLSFSS 427 (741)
T ss_dssp CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCB-------TCS-----CEEEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCC-------CCC-----EEEEEEcC
Confidence 455556678887 56678888889987777654 4555666654 467788999998 772 12222
Q ss_pred EeCCCeEEEEECCCCeE
Q 008939 414 VGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~ 430 (548)
....+.|.+||+.+++.
T Consensus 428 ~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 428 FTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 23458899999998874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-10 Score=115.00 Aligned_cols=241 Identities=9% Similarity=0.053 Sum_probs=158.1
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~ 207 (548)
..+..++|+++|.++++...+ .|++||++++ .+..+......+. ++|+|+ +..|+++..++ .|++|+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~~~~~~-ia~~~~---g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPGFKGGK-PAVTKD---KQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEETCCBCB-CEECTT---SSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeeccCCCCc-eeEecC---CCcEEEEecCCCceEEEEEcCC
Confidence 356789999999977776665 9999999863 3434433334445 999998 77888888866 688888654
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
. ........... .....+.+++++|++. .|+++..++.|+.||...... ..+....
T Consensus 204 ~-----~~~~~~g~~~~---~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~--~~~~~~~------------- 259 (409)
T 3hrp_A 204 G-----WAPTRIGQLGS---TFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV--TLIKQLE------------- 259 (409)
T ss_dssp T-----TCEEEEEECCT---TSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE--EEEEECC-------------
T ss_pred C-----ceeEEeeeccc---hhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE--EEEeccc-------------
Confidence 1 11111000000 0245678899999555 455577788999999875210 0000000
Q ss_pred CCCCeeEeeecCCC--eEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec---------------CCceEEEEE
Q 008939 288 KSNPIARWHICQGS--INSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY---------------YGALLCCAW 349 (548)
Q Consensus 288 ~~~~~~~~~~h~~~--v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------------~~~v~~l~~ 349 (548)
...+... ...++|+|+ +.++++-..++.|+.|+.... +..+.++ ......+++
T Consensus 260 -------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~ 330 (409)
T 3hrp_A 260 -------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV 330 (409)
T ss_dssp -------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred -------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence 0001111 238999995 555566567789999998643 2222222 235789999
Q ss_pred ccCCCEEEEEe-CCCeEEEEECCCceeEEeccCC---------------CCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 350 SMDGKYILTGG-EDDLVQVWSMEDRKVVAWGEGH---------------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 350 spdg~~l~sgs-~dg~I~vwd~~~~~~~~~~~~h---------------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
+|+|+++++-. .++.|+.||+.+++.. .+.++ -.....|+++| +| .++++
T Consensus 331 d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-------~g------~lyVa 396 (409)
T 3hrp_A 331 DEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDG-------EG------GYWIA 396 (409)
T ss_dssp CTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECS-------SS------EEEEE
T ss_pred eCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcC-------CC------CEEEE
Confidence 99999888887 8999999998877643 33333 24678999998 88 78888
Q ss_pred EeCCCeEEEEEC
Q 008939 414 VGQDTRLLLWDL 425 (548)
Q Consensus 414 ~~~Dg~i~lwd~ 425 (548)
-..++.|+.+++
T Consensus 397 d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 397 EAWGKAIRKYAV 408 (409)
T ss_dssp ESTTCEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 888888888775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-09 Score=106.32 Aligned_cols=216 Identities=13% Similarity=0.109 Sum_probs=143.4
Q ss_pred eeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....|++++..+.+ ...+ .|+.||..++. +..+. .+..+.+++++++ +. |+++. ++.|++||.++.
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~~~~i~~~~d---G~-l~v~~-~~~l~~~d~~~g--- 83 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---VQRVT-MDAPVSSVALRQS---GG-YVATI-GTKFCALNWKEQ--- 83 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC---EEEEE-CSSCEEEEEEBTT---SS-EEEEE-TTEEEEEETTTT---
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc---EEEEe-CCCceEEEEECCC---CC-EEEEE-CCeEEEEECCCC---
Confidence 46788886555554 4444 99999998643 33443 4568999999998 66 55555 668999997641
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC---------CCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA---------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
++....... .. .....++++++.|++. ++++... ...-.||.++..+.
T Consensus 84 ---~~~~~~~~~-~~-~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----------------- 140 (297)
T 3g4e_A 84 ---SAVVLATVD-ND-KKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH----------------- 140 (297)
T ss_dssp ---EEEEEEECC-TT-CSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-----------------
T ss_pred ---cEEEEEecC-CC-CCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-----------------
Confidence 111111100 01 1235689999999998 5554322 12345555543221
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeC--CCCeE-----EEeeeecCCceEEEEEccCCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDY--SKEQL-----ICGGKSYYGALLCCAWSMDGK 354 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~--~~~~~-----~~~~~~~~~~v~~l~~spdg~ 354 (548)
+..+..+....+.++|+|+++.|+.+ +.++.|.+||+ .++.+ ...+..+.+....+++.++|+
T Consensus 141 ---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 141 ---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp ---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred ---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 11111122456789999999877554 45788999987 45543 222333345678999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe-c
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD-S 393 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~-p 393 (548)
+.++...++.|.+||.++++.+..+..+...+++++|. |
T Consensus 212 lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~ 251 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK 251 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESG
T ss_pred EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCC
Confidence 88888788899999999999988888777889999998 7
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=122.14 Aligned_cols=173 Identities=11% Similarity=0.137 Sum_probs=130.9
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCC---------CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQD---------KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~---------~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
++..+++++...++++++.+.+.||+++... .++...+. .+. ++.++| + +..|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d---~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--H---GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--E---TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--C---CCEEEEE-cCCcEEE
Confidence 5678999999999999999999999976533 23434444 455 999999 5 7789988 8899999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
||+++... .... . .+...+.++.+.+. .++++..||.|++||+.....
T Consensus 111 ~dv~sl~~--~~~~---~-------~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~----------------- 158 (388)
T 1xip_A 111 LDLEELSE--FRTV---T-------SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST----------------- 158 (388)
T ss_dssp EESSSTTC--EEEE---E-------ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEchhhhc--cCcc---c-------eeecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-----------------
Confidence 99987421 1111 1 14556788877755 388889999999999985211
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeE--EEee------e---ecCCceEEEEEcc
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL--ICGG------K---SYYGALLCCAWSM 351 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~--~~~~------~---~~~~~v~~l~~sp 351 (548)
. . +...|.|++|||+| ++.+..||.+++|+...+++ ...+ . +|...|.+|.|.+
T Consensus 159 ---------~-~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 159 ---------K-Q---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ---------E-E---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred ---------c-c---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 0 0 12579999999999 67899999999999987775 4445 2 3678899999999
Q ss_pred CCCEEEEE
Q 008939 352 DGKYILTG 359 (548)
Q Consensus 352 dg~~l~sg 359 (548)
++++|++=
T Consensus 224 ~~~flv~y 231 (388)
T 1xip_A 224 PQDFLAVF 231 (388)
T ss_dssp SSEEEEEE
T ss_pred CCeEEEEE
Confidence 99988873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-10 Score=108.85 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=157.3
Q ss_pred CCCCceEEEecCCCCCCceEEE-------EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC-CC
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLI-------GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG-GD 243 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~-------g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~-~~ 243 (548)
.-..+.+++|+++ +.++++ +..++.|++||..+. + ...... +....+...+.+++++++ +.
T Consensus 16 ~~~~~~~~~~~~~---g~l~~~~~~~~~~~~~~~~i~~~d~~~g-----~-~~~~~~--~~~~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 16 DIPGAEGPVFDKN---GDFYIVAPEVEVNGKPAGEILRIDLKTG-----K-KTVICK--PEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp CCTTCEEEEECTT---SCEEEEETTCEETTEECCEEEEECTTTC-----C-EEEEEC--CEETTEECCEEEEEECSSSSE
T ss_pred cCCCccCceECCC---CCEEEEEeccccCCCCCCEEEEEeCCCC-----c-EEEEEe--cccCCCCCCCceEEEecCCCc
Confidence 4457789999977 655665 477889999986541 1 111000 000013456889999999 65
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCC-cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC--
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSS-FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD-- 320 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-- 320 (548)
|+++..+..|.+||.. +..... ..... ..+...+.+++++++|+++++...+
T Consensus 85 --l~v~~~~~~l~~~d~~--g~~~~~~~~~~~---------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 139 (314)
T 1pjx_A 85 --LFVADMRLGLLVVQTD--GTFEEIAKKDSE---------------------GRRMQGCNDCAFDYEGNLWITAPAGEV 139 (314)
T ss_dssp --EEEEETTTEEEEEETT--SCEEECCSBCTT---------------------SCBCBCCCEEEECTTSCEEEEECBCBC
T ss_pred --EEEEECCCCEEEEeCC--CCEEEEEeccCC---------------------CccccCCcCEEECCCCCEEEEecCccc
Confidence 4444444578899876 221110 00000 0011357899999999877776554
Q ss_pred -------------CeEEEEeCCCCeEEEeeeecCCceEEEEEc----cCCCEEEEE-eCCCeEEEEECC-Cce-----eE
Q 008939 321 -------------GYLRVFDYSKEQLICGGKSYYGALLCCAWS----MDGKYILTG-GEDDLVQVWSME-DRK-----VV 376 (548)
Q Consensus 321 -------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~s----pdg~~l~sg-s~dg~I~vwd~~-~~~-----~~ 376 (548)
+.|..||.. ++..... .+......++|+ |+++.|+++ ..++.|.+||++ +++ ..
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~ 217 (314)
T 1pjx_A 140 APADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp TTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE
Confidence 567778776 5544332 233456889999 999765554 567899999986 443 33
Q ss_pred EeccCCC-CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccC
Q 008939 377 AWGEGHN-SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWD 455 (548)
Q Consensus 377 ~~~~~h~-~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 455 (548)
..+..+. ..+..+++++ +| +++++...++.|.+||..+++.+..+.
T Consensus 218 ~~~~~~~~~~p~~i~~d~-------~G------~l~v~~~~~~~i~~~d~~~g~~~~~~~-------------------- 264 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDE-------DN------NLLVANWGSSHIEVFGPDGGQPKMRIR-------------------- 264 (314)
T ss_dssp EECCCCSSCEEEEEEEBT-------TC------CEEEEEETTTEEEEECTTCBSCSEEEE--------------------
T ss_pred EECCCCCCCCCCceEECC-------CC------CEEEEEcCCCEEEEEcCCCCcEeEEEe--------------------
Confidence 3444454 6688999999 88 677777778899999987655432221
Q ss_pred CeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EE-EEECCCeEEEEeCCC
Q 008939 456 NVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VL-TVCREGHIKIWMRPG 514 (548)
Q Consensus 456 ~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~-t~s~Dg~I~iW~~~~ 514 (548)
.+...+.+++|+|++ |+ +...++.|..|++..
T Consensus 265 ---------------------------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 265 ---------------------------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ---------------------------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ---------------------------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 234568999999873 44 445668999999764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-11 Score=118.31 Aligned_cols=171 Identities=10% Similarity=-0.002 Sum_probs=123.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc---ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV---GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
.+..+++++. ..++++|+.+ .+.+|++....... .+....... ..+.. |+.|+| ++. +|+++ .
T Consensus 39 ~~nlLais~~---~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-----~~lp~-V~~l~f--d~~-~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNS---KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-----KEIPD-VIFVCF--HGD-QVLVS-T 104 (388)
T ss_dssp CCBCEEEETT---TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-----EECTT-EEEEEE--ETT-EEEEE-E
T ss_pred cccEEEEcCC---CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-----eeCCC-eeEEEE--CCC-EEEEE-c
Confidence 6888999998 6788888887 55569987532000 000000000 01345 999999 776 88888 8
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE 331 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~ 331 (548)
++.|++||++.-. .......|+..+.++.+.+. .+++++.||.|.+||+.++
T Consensus 105 ~~~l~v~dv~sl~--------------------------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 105 RNALYSLDLEELS--------------------------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp SSEEEEEESSSTT--------------------------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEchhhh--------------------------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC
Confidence 8999999998621 12223445566778777654 3888999999999999988
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee--EEec------c---CCCCCeEEEEEec
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV--VAWG------E---GHNSWVSGVAFDS 393 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~--~~~~------~---~h~~~V~~v~~~p 393 (548)
+... +...|.|++|+|+| ++.|..||.|++|+.+.++. ..++ . +|...|.+|.|.+
T Consensus 157 ~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 157 STKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp CEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred cccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 7653 34579999999999 68899999999999987775 5555 2 4788999999998
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-09 Score=104.18 Aligned_cols=207 Identities=10% Similarity=0.100 Sum_probs=131.9
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
-.-+..|+|+. +.++++...++.|+.||.... ... ... ....+.+++++|++. ++++ . +..
T Consensus 14 ~~Egp~w~~~~--~~l~~~d~~~~~i~~~d~~~~------~~~-~~~-------~~~~~~~i~~~~dG~-l~v~-~-~~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVS--NSLLFVDIPAKKVCRWDSFTK------QVQ-RVT-------MDAPVSSVALRQSGG-YVAT-I-GTK 74 (297)
T ss_dssp BEEEEEEETTT--TEEEEEETTTTEEEEEETTTC------CEE-EEE-------CSSCEEEEEEBTTSS-EEEE-E-TTE
T ss_pred cccCCeEECCC--CEEEEEECCCCEEEEEECCCC------cEE-EEe-------CCCceEEEEECCCCC-EEEE-E-CCe
Confidence 44577888862 556677777889999998752 111 111 246789999999998 5444 4 567
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC---------CeEEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD---------GYLRV 325 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---------g~v~v 325 (548)
|++||..+.. .. .+..... .. ....++.++++|+|+++++...+ ..-.+
T Consensus 75 l~~~d~~~g~-~~-~~~~~~~-------------~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l 132 (297)
T 3g4e_A 75 FCALNWKEQS-AV-VLATVDN-------------DK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGAL 132 (297)
T ss_dssp EEEEETTTTE-EE-EEEECCT-------------TC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEE
T ss_pred EEEEECCCCc-EE-EEEecCC-------------CC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEE
Confidence 9999986521 00 0000000 00 01347889999999976654321 22345
Q ss_pred EeCCC-CeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEEC--CCcee-----EEeccCCCCCeEEEEEecCCC
Q 008939 326 FDYSK-EQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSM--EDRKV-----VAWGEGHNSWVSGVAFDSYWS 396 (548)
Q Consensus 326 wd~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~--~~~~~-----~~~~~~h~~~V~~v~~~p~~~ 396 (548)
|.+.. ++... +.......+.++|+||++.|+ +.+.++.|.+||+ .++.. ...+..+......+++++
T Consensus 133 ~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~--- 208 (297)
T 3g4e_A 133 YSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA--- 208 (297)
T ss_dssp EEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT---
T ss_pred EEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC---
Confidence 54432 33332 233345578899999998765 4556789999997 44432 333333456788999998
Q ss_pred CCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 397 QPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 397 ~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+| ++.++...++.|..||..+++.+..+..
T Consensus 209 ----~G------~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 209 ----EG------KLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp ----TS------CEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred ----CC------CEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 88 6777777788999999998887765543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-08 Score=101.77 Aligned_cols=272 Identities=7% Similarity=-0.052 Sum_probs=164.8
Q ss_pred CCCCCEEEEecC---C---eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEE
Q 008939 139 DGKGTYIIFNVG---D---AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYS 202 (548)
Q Consensus 139 ~~~g~~l~~~~~---d---~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~i 202 (548)
.+++.++..... + .|.++|..+.+ .+..+... ..+ .++|+|+ ++.|+++. .++.|.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~--~~~~i~~g-~~p-~i~~spD---g~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNGG-FLP-NPVAAHS---GSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCe--EEEEecCC-CCC-CeEECCC---CCEEEEEeccccccccCCCCCeEEE
Confidence 356665554332 2 78999998754 66666643 345 9999999 77888886 3677999
Q ss_pred EEeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCccccccccee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
||..+. +........ ............+.|+|+++ +|+++.. ++.|.++| .+. +.
T Consensus 102 iD~~t~------~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~-~~------------- 159 (373)
T 2mad_H 102 FDPVTF------LPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGG-SS------------- 159 (373)
T ss_pred EECCCC------cEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCC-CE-------------
Confidence 998751 122222111 00000112356899999999 6776653 57899999 752 21
Q ss_pred eeecCCCCCCCCeeE-eeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEeee-----ecCCc-eEEEEEcc
Q 008939 280 SVAHPRYSKSNPIAR-WHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICGGK-----SYYGA-LLCCAWSM 351 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~~~~~-v~~l~~sp 351 (548)
+.. +.. . .++.+.|++ +.+++.+.||.+.++|. +++.+.... ....+ .....+.+
T Consensus 160 ------------~~~~i~~--~--~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 160 ------------DDQLLSS--P--TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred ------------EeEEcCC--C--ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 111 110 1 124445554 45566778999999999 877663322 11112 12345667
Q ss_pred CCCEEEEEeCCCeEEEEECCCce--eEEeccCC----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---
Q 008939 352 DGKYILTGGEDDLVQVWSMEDRK--VVAWGEGH----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ--- 416 (548)
Q Consensus 352 dg~~l~sgs~dg~I~vwd~~~~~--~~~~~~~h----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~--- 416 (548)
++..++..+.++.+.+.|+.... .+..+.-. ......+.++| |+ .++.....
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-------d~------~~lyV~~~~~~ 289 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-------SS------DGIYLLTSEQS 289 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-------CC------CEEEEEeccCC
Confidence 66655544577899999997652 22332211 12233467777 76 33433322
Q ss_pred -------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 417 -------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 417 -------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
++.|.++|+.+.+.+..+.. .....
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~------------------------------------------------g~~p~ 321 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISL------------------------------------------------GHDVD 321 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEEC------------------------------------------------CCCcC
Confidence 35788888888887766543 22468
Q ss_pred EEEEeCCe---EEEEE-CCCeEEEEeCCCCCc
Q 008939 490 GLIFTQES---VLTVC-REGHIKIWMRPGVAE 517 (548)
Q Consensus 490 ~l~fspd~---l~t~s-~Dg~I~iW~~~~~~~ 517 (548)
+++|+||+ ++++. .++.|.+||..+.+.
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 89999973 66666 589999999887663
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-09 Score=99.82 Aligned_cols=199 Identities=10% Similarity=0.038 Sum_probs=135.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
...+.+++++++ +...++...++.|.+||... ++.. ... . .....+.++++.+++. ++++...+
T Consensus 19 ~~~p~~i~~d~~---g~l~v~~~~~~~v~~~~~~~-------~~~~-~~~-~---~~~~~~~~i~~~~~g~-l~v~~~~~ 82 (300)
T 2qc5_A 19 DSGPYGITSSED---GKVWFTQHKANKISSLDQSG-------RIKE-FEV-P---TPDAKVMCLIVSSLGD-IWFTENGA 82 (300)
T ss_dssp TCCEEEEEECTT---SCEEEEETTTTEEEEECTTS-------CEEE-EEC-S---STTCCEEEEEECTTSC-EEEEETTT
T ss_pred CCCcceeeECCC---CCEEEEcCCCCeEEEECCCC-------ceEE-EEC-C---CCCCcceeEEECCCCC-EEEEecCC
Confidence 357889999887 65555555678999998652 1111 000 0 1235788999999987 66666667
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
+.|..||... . .. .+. .......+.++++.++++++++...++.|..||.. ++
T Consensus 83 ~~v~~~d~~g-~-~~-~~~-----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 83 NKIGKLSKKG-G-FT-EYP-----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TEEEEECTTS-C-EE-EEE-----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CeEEEECCCC-C-eE-Eec-----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 8899998662 1 10 000 00012568899999999887777668899999987 65
Q ss_pred EEE-eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE-eccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 333 LIC-GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 333 ~~~-~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
... .+......+..+++.++++++++...++.|.+||. +++... .+..+...+.++++++ +| .+
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-------~g------~l 201 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGN-------DG------AL 201 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------TS------SE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECC-------CC------CE
Confidence 542 23334457899999999997777666889999998 554433 2233456789999998 88 56
Q ss_pred EEEEeCCCeEEEEECCCCe
Q 008939 411 FGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~ 429 (548)
+++....+.|.+||. +++
T Consensus 202 ~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 202 WFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EEEETTTTEEEEECT-TCC
T ss_pred EEEccCCCEEEEEcC-CCc
Confidence 666666778999998 444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-10 Score=113.00 Aligned_cols=243 Identities=17% Similarity=0.129 Sum_probs=165.2
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.++|||+++.++. ++.|.++|..+.+ .+..+... ...+..++|+|+ +++|+++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~spD---Gk~lyV~n~ 196 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTPD---NKNLLFYQF 196 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECTT---SSEEEEEEC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcCC---CCEEEEEec
Confidence 799999999887764 3489999999844 78777653 246788999999 888998874
Q ss_pred --CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
++.|.++|+.+ .+++..... .. +....|++...+++.+.||.+.+.+... +.......
T Consensus 197 ~~~~~VsVID~~t------~kvv~~I~v--------~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~--- 256 (426)
T 3c75_H 197 SPAPAVGVVDLEG------KTFDRMLDV--------PD--CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT--- 256 (426)
T ss_dssp SSSCEEEEEETTT------TEEEEEEEC--------CS--EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC---
T ss_pred CCCCeEEEEECCC------CeEEEEEEc--------CC--ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee---
Confidence 57899999886 233332221 11 1344565555777788888888888833 22211000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCC-eEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE--eeee----------cC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGS-INSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC--GGKS----------YY 341 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~--~~~~----------~~ 341 (548)
. .+.....+ ...+.|.+++..++.....+.|.+.|+....... .+.- ..
T Consensus 257 --~----------------~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 257 --E----------------VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp --C----------------CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred --e----------------eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 0 00000011 1135678988888877888999999997554321 1110 01
Q ss_pred CceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeE-E
Q 008939 342 GALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMY-R 410 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~-~ 410 (548)
.....++++|+++.+++... .+.|.++|+.+.+.+.++.. .....+|.|+| || + +
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~sp-------Dg------~~~ 384 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQ-------DA------EPL 384 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECC-------SS------SCE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEcc-------CC------CEE
Confidence 12234789999988777642 35799999999999988863 23578899999 98 5 6
Q ss_pred EEEEe-CCCeEEEEECCCCeEEeee
Q 008939 411 FGSVG-QDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 411 l~s~~-~Dg~i~lwd~~~~~~~~~~ 434 (548)
+++.. .++.|.++|+.+.+.+..+
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEe
Confidence 66666 5999999999999999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=110.12 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=132.2
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+..++|+++ +.++++...++.|++||+... .+..... ...... ++|+|+++ .|+++..++
T Consensus 131 ~~P~~la~d~~---g~lyv~d~~~~~I~~id~~~g------~~~~~~~-------~~~~~~-ia~~~~g~-~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGN---NTVLAYQRDDPRVRLISVDDN------KVTTVHP-------GFKGGK-PAVTKDKQ-RVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECST---TEEEEEETTTTEEEEEETTTT------EEEEEEE-------TCCBCB-CEECTTSS-EEEEEBSST
T ss_pred CCceEEEEeCC---CCEEEEecCCCcEEEEECCCC------EEEEeec-------cCCCCc-eeEecCCC-cEEEEecCC
Confidence 36889999987 776666666789999998751 2211111 112233 99999998 777777766
Q ss_pred --cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 254 --NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 254 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|++|+...... ...+ ..... ....+.+++++|+...|+++..++.|+.||..+
T Consensus 193 ~~~I~~~d~~~~~~-~~~~----------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 193 THTVYVYMKASGWA-PTRI----------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp TCEEEEEEGGGTTC-EEEE----------------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT
T ss_pred CceEEEEEcCCCce-eEEe----------------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC
Confidence 788888754211 0000 00000 125577899999544555577788999999987
Q ss_pred CeEEEe----eeecCCce--EEEEEccC-CCEEEEEeCCCeEEEEECCCceeEEeccCC---------------CCCeEE
Q 008939 331 EQLICG----GKSYYGAL--LCCAWSMD-GKYILTGGEDDLVQVWSMEDRKVVAWGEGH---------------NSWVSG 388 (548)
Q Consensus 331 ~~~~~~----~~~~~~~v--~~l~~spd-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h---------------~~~V~~ 388 (548)
+..... ..++...- ..++|+|+ +.++++-..++.|+.|+.+.. +..+.++ -.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 754322 12222222 38999995 666666667889999998643 2222222 245789
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCCCeEE
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIV 431 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~ 431 (548)
++++| +| .++++-. .+++|+.||+.+++..
T Consensus 328 ia~d~-------dG------~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 328 MTVDE-------DG------NFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEECT-------TC------CEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEeC-------CC------CEEEEeCCCCCEEEEEECCCCEEE
Confidence 99999 88 6777777 8899999998887754
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-10 Score=121.08 Aligned_cols=247 Identities=16% Similarity=0.165 Sum_probs=153.1
Q ss_pred CCCCceeEEeCCCCCEEEEec----CC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC----
Q 008939 129 SSTSMTNTNFDGKGTYIIFNV----GD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG---- 198 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~----~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg---- 198 (548)
|...+..++|+|||++|+++. .+ .|+|||++++. .+. ..........++|+ + ++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~-~~~~~~k~~~~~Ws-D---g~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLE-TPLKDVKFSGISWL-G---NEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEE-EEEEEEESCCCEEE-T---TTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCc-cccCCceeccEEEe-C---CCEEEEEEecCcccc
Confidence 445677889999999999732 22 89999999865 332 22222223567899 8 66788888774
Q ss_pred ---------cEEEEEeeecccccccceeeeeeeccCCcc-cCcceEEEEEecCCCcEEEEEeC---CCcEEEEEcCCCCC
Q 008939 199 ---------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSV-NNSRCTSVTWVPGGDGAFVVGHA---DGNLYVYEKSKDGA 265 (548)
Q Consensus 199 ---------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~l~s~~~---dg~v~vwd~~~~~~ 265 (548)
.|++|++.+... ...++... .. +...+..+.|+|+++.++++... +..|+++|+.....
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQE--DDRLVFGA------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -----CCCCEEEEEETTSCGG--GCEEEESC------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cccccCCCcEEEEEECCCCcc--cceEEEec------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 399999876211 11111110 11 23456789999999944454442 25899999875321
Q ss_pred CCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-C---CeEEEEeCCCCeE--EEeeee
Q 008939 266 GDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-D---GYLRVFDYSKEQL--ICGGKS 339 (548)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-d---g~v~vwd~~~~~~--~~~~~~ 339 (548)
....+..+....... |++++..|+..+. + +.|.++|+.++.. ...+..
T Consensus 272 -------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 272 -------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp -------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred -------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 122233333444444 6666665555443 3 6799999987653 234455
Q ss_pred cCCceEEEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 340 YYGALLCCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 340 ~~~~v~~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
|...+. .|+++++.|+....++ .|++||+..+.. ..+. .+...+..+.++| ++. .++++.+
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~-------d~~-----~l~~~~s 390 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKH-------DDP-----ALYFGFE 390 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCT-------TCS-----CEEEEEE
T ss_pred CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCC-------CCC-----EEEEEec
Confidence 655555 8999999887766544 689999985543 3333 3455677777777 662 2333332
Q ss_pred C---CCeEEEEECCCCeEE
Q 008939 416 Q---DTRLLLWDLEMDEIV 431 (548)
Q Consensus 416 ~---Dg~i~lwd~~~~~~~ 431 (548)
. -+.|..||+.+++..
T Consensus 391 s~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 391 NYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp CSSSCCEEEEECTTTCCEE
T ss_pred CCCCCCEEEEEECCCCeEE
Confidence 2 278999999887643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-09 Score=105.36 Aligned_cols=277 Identities=12% Similarity=0.039 Sum_probs=170.5
Q ss_pred EEeCCCCCEEEEecC------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCc
Q 008939 136 TNFDGKGTYIIFNVG------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGD 199 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~ 199 (548)
....|++..+.+... +.|.+.|..+.+ .+..+.... .+. ++++|+ ++.|+++. .++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~vG~-~P~-va~spD---G~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGF-LPN-PVVADD---GSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEECS-SCE-EEECTT---SSCEEEEEEEEEETTEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEECCC-CCc-EEECCC---CCEEEEEcccccccccCCCCCE
Confidence 344688887776532 389999998844 777777543 455 999999 77788876 3577
Q ss_pred EEEEEeeecccccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCccccccc
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQ 276 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~ 276 (548)
|.+||..+ .++........ ...........+.|+|+++ +|+++.. ++.|.++|+.+.
T Consensus 111 VsviD~~t------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~------------- 170 (386)
T 3sjl_D 111 VEVFDPVT------LLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGK------------- 170 (386)
T ss_dssp EEEECTTT------CCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTT-------------
T ss_pred EEEEECCC------CeEEEEEECCCccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCC-------------
Confidence 99999876 22222222111 0000123466899999999 6666653 689999999872
Q ss_pred ceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC-CeEEEeeeecC----Cce-EEEEEc
Q 008939 277 TQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLICGGKSYY----GAL-LCCAWS 350 (548)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~----~~v-~~l~~s 350 (548)
+.+..+.. ..+ ...+....+.+++.+.||.+.+.++.+ ++.+.....+. .++ ....|.
T Consensus 171 -------------~vv~tI~v--~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 171 -------------AFKRMLDV--PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp -------------EEEEEEEC--CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred -------------cEEEEEEC--CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence 12222221 111 122333456677788889888888875 55432211111 122 124564
Q ss_pred -cCCCEEEEEeCCCeEEEEECCCce--eEEecc---------C-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC-
Q 008939 351 -MDGKYILTGGEDDLVQVWSMEDRK--VVAWGE---------G-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ- 416 (548)
Q Consensus 351 -pdg~~l~sgs~dg~I~vwd~~~~~--~~~~~~---------~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~- 416 (548)
++|++++ .+.++.|.+.|+.... .+..+. + .......++++| ++. +++++...
T Consensus 235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-------~~~-----~lyV~~~~~ 301 (386)
T 3sjl_D 235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-------ALD-----RIYLLVDQR 301 (386)
T ss_dssp TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-------TTT-----EEEEEEEEC
T ss_pred cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-------CCC-----eEEEEeccc
Confidence 6886555 5568999999997653 332221 0 112333577787 762 33333321
Q ss_pred --------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 417 --------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 417 --------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
...|.+.|+.+.+.+..+.. ...+
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v------------------------------------------------g~~~ 333 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEM------------------------------------------------GHEI 333 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE------------------------------------------------EEEE
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEEC------------------------------------------------CCCc
Confidence 25799999999988876654 1257
Q ss_pred eEEEEeCCe---EEEE-ECCCeEEEEeCCCCC
Q 008939 489 SGLIFTQES---VLTV-CREGHIKIWMRPGVA 516 (548)
Q Consensus 489 ~~l~fspd~---l~t~-s~Dg~I~iW~~~~~~ 516 (548)
.+|+|++|. |+++ ..++.|.++|..+.+
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 889999973 5554 458999999988766
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-08 Score=100.10 Aligned_cols=212 Identities=16% Similarity=0.109 Sum_probs=136.0
Q ss_pred eeEEeCCCCCEEEE-ecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 134 TNTNFDGKGTYIIF-NVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 134 ~~~~~~~~g~~l~~-~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
....|++++..+++ ... +.|++||.+++. +..+. .+..+.+++|+|+ +.+++ +.. ..|++||..+.
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~-~~~~v~~i~~~~d---g~l~v-~~~-~gl~~~d~~~g--- 119 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGR---KTVHA-LPFMGSALAKISD---SKQLI-ASD-DGLFLRDTATG--- 119 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEE-CSSCEEEEEEEET---TEEEE-EET-TEEEEEETTTC---
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEE-CCCcceEEEEeCC---CeEEE-EEC-CCEEEEECCCC---
Confidence 35789998665555 433 499999988632 33343 3568999999998 55544 444 45999987641
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.+..... .........+++++++|++. ++++... .+.|+.++ . +..
T Consensus 120 ---~~~~~~~--~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~------------------- 171 (326)
T 2ghs_A 120 ---VLTLHAE--LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKV------------------- 171 (326)
T ss_dssp ---CEEEEEC--SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEE-------------------
T ss_pred ---cEEEEee--CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcE-------------------
Confidence 1111111 00001235689999999998 5554432 24455555 2 211
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CC-eE-----EEeeeecCCceEEEEEccCCCEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KE-QL-----ICGGKSYYGALLCCAWSMDGKYI 356 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~-~~-----~~~~~~~~~~v~~l~~spdg~~l 356 (548)
..+..+......++|+|+++.|+.+. .++.|.+||+. ++ +. ...+.........+++.++|.++
T Consensus 172 -------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lw 244 (326)
T 2ghs_A 172 -------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 244 (326)
T ss_dssp -------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred -------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEE
Confidence 11111123567899999998776654 56899999986 55 32 22222234557789999999887
Q ss_pred EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEe-c
Q 008939 357 LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD-S 393 (548)
Q Consensus 357 ~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~-p 393 (548)
++...++.|.+||. +++.+..+..+...+++++|. |
T Consensus 245 va~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 245 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 77767789999998 577777777677789999998 7
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-08 Score=97.58 Aligned_cols=200 Identities=10% Similarity=0.066 Sum_probs=125.1
Q ss_pred ceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE
Q 008939 176 PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL 255 (548)
Q Consensus 176 ~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v 255 (548)
..+.+|+|+. +.++++...++.|+.||.... .... .. ....+.+++|.|++. +++ +..+ .|
T Consensus 51 ~egp~~~~~~--~~l~~~d~~~~~i~~~d~~~~------~~~~-~~-------~~~~v~~i~~~~dg~-l~v-~~~~-gl 111 (326)
T 2ghs_A 51 GEGPTFDPAS--GTAWWFNILERELHELHLASG------RKTV-HA-------LPFMGSALAKISDSK-QLI-ASDD-GL 111 (326)
T ss_dssp EEEEEEETTT--TEEEEEEGGGTEEEEEETTTT------EEEE-EE-------CSSCEEEEEEEETTE-EEE-EETT-EE
T ss_pred CcCCeEeCCC--CEEEEEECCCCEEEEEECCCC------cEEE-EE-------CCCcceEEEEeCCCe-EEE-EECC-CE
Confidence 3566788862 456677777889999997651 1111 11 235789999999987 554 4444 49
Q ss_pred EEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------CCeEEEEeCC
Q 008939 256 YVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR------DGYLRVFDYS 329 (548)
Q Consensus 256 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~v~vwd~~ 329 (548)
++||..... .. .+..... . .....+++++++|+|+++++... .+.|..++
T Consensus 112 ~~~d~~~g~-~~-~~~~~~~-------------~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-- 167 (326)
T 2ghs_A 112 FLRDTATGV-LT-LHAELES-------------D-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-- 167 (326)
T ss_dssp EEEETTTCC-EE-EEECSST-------------T-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--
T ss_pred EEEECCCCc-EE-EEeeCCC-------------C-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--
Confidence 999986521 10 0000000 0 00135789999999987665432 24566666
Q ss_pred CCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECC--Cc-e-----eEEeccCCCCCeEEEEEecCCCCCCC
Q 008939 330 KEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSME--DR-K-----VVAWGEGHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 330 ~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~--~~-~-----~~~~~~~h~~~V~~v~~~p~~~~~~~ 400 (548)
+++... +.........++|+||++.|+.+ ..++.|.+||++ ++ + .+..+.........+++++
T Consensus 168 ~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~------- 239 (326)
T 2ghs_A 168 KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------- 239 (326)
T ss_dssp TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-------
T ss_pred CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-------
Confidence 455433 22333457789999999876554 457899999986 55 2 2333433455678899988
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+| .++++...++.|.+||. .++.+..
T Consensus 240 ~G------~lwva~~~~~~v~~~d~-~g~~~~~ 265 (326)
T 2ghs_A 240 EG------HIWNARWGEGAVDRYDT-DGNHIAR 265 (326)
T ss_dssp TS------CEEEEEETTTEEEEECT-TCCEEEE
T ss_pred CC------CEEEEEeCCCEEEEECC-CCCEEEE
Confidence 88 56666666788999998 4554443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-09 Score=101.65 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=139.6
Q ss_pred ceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 133 MTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 133 v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
.....|+++|+.|++ ...+ .|+.|+... .+..+......+..++++++ ++++++...++.|.+|+.....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~~~~~~~~~~~gl~~d~d---G~l~v~~~~~~~v~~~~~~g~~- 118 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVDVLLDATAFTNGNAVDAQ---QRLVHCEHGRRAITRSDADGQA- 118 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEEEEEESCSCEEEEEECTT---SCEEEEETTTTEEEEECTTSCE-
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEEEEeCCCCccceeeECCC---CCEEEEECCCCEEEEECCCCCE-
Confidence 346889999995555 4443 899998742 24555556678899999998 6654444445789999864210
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEE----EeC-------------CCcEEEEEcCCCCCCCCCcccc
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV----GHA-------------DGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s----~~~-------------dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
..+.. .. .. .....++++++.|+|. ++++ |.. .+.|+.||.... .
T Consensus 119 ---~~~~~--~~--~~-~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~-------- 180 (305)
T 3dr2_A 119 ---HLLVG--RY--AG-KRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-P-------- 180 (305)
T ss_dssp ---EEEEC--EE--TT-EECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-C--------
T ss_pred ---EEEEe--cc--CC-CccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCC-c--------
Confidence 11110 00 00 1234578899999998 6665 332 245666655431 1
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC------CeEEEEeCCCCeEE--Eee-eecCCce
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD------GYLRVFDYSKEQLI--CGG-KSYYGAL 344 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d------g~v~vwd~~~~~~~--~~~-~~~~~~v 344 (548)
+..+. .....+.++|+||++.|+.+... +.|.+|++..+.+. ..+ ....+..
T Consensus 181 ------------------~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 181 ------------------LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp ------------------CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred ------------------EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 11111 22456789999999988887765 78999998765421 111 1123345
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
..+++.++|++. ++..+ .|.+||. +++.+..+..+. .+..++|.| ++ ..|..++.++
T Consensus 242 dgi~~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~-------d~------~~L~it~~~~ 298 (305)
T 3dr2_A 242 DGFCVDRGGWLW-SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ-------AQ------QRLFITGGPC 298 (305)
T ss_dssp CSEEECTTSCEE-ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECT-------TS------CEEEEEETTE
T ss_pred CeEEECCCCCEE-EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeC-------CC------CEEEEEcCCe
Confidence 678999999844 44444 5999998 466666666444 588999988 77 4566555554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.8e-10 Score=108.97 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=162.3
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecC-------CCCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFS-------NSNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~-------~~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.+.|+|||+++.++. ++.|.+||+.+.. .+..+... ...+..++|+|+ +++|+++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpD---Gk~lyVan~ 143 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCAS---SACLLFFLF 143 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTT---SSCEEEEEC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCC---CCEEEEEcc
Confidence 799999999888865 3489999999854 88888754 246889999999 778998875
Q ss_pred --CCcEEE--EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCC----CCCCCC
Q 008939 197 --SGDVYS--VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSK----DGAGDS 268 (548)
Q Consensus 197 --dg~I~i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~----~~~~~~ 268 (548)
+..|.+ +|+.+ .+.+ . ... |+...|++...+++.+.||.+.+.|+.. .+....
T Consensus 144 ~~~~~v~V~~iD~~t-----v~~i----~--------v~~--~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 144 GSSAAAGLSVPGASD-----DQLT----K--------SAS--CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp SSSCEEEEEETTTEE-----EEEE----E--------CSS--CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CCCCeEEEEEEchhh-----ceEE----E--------CCC--ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 356888 88765 1111 1 001 1224566665777788899998888875 222111
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe--EEEeeee-------
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ--LICGGKS------- 339 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~--~~~~~~~------- 339 (548)
... . .+.....+. . .+++..++..+. +.|.+.|+.... .+..+.-
T Consensus 205 ~~t-----~----------------~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 205 QCT-----G----------------AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp CSC-----T----------------TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred Eee-----e----------------eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 000 0 001111333 3 555666666666 899999996542 3322211
Q ss_pred c---CCceEEEEEccCCCEEEEEeC---------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 340 Y---YGALLCCAWSMDGKYILTGGE---------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 340 ~---~~~v~~l~~spdg~~l~sgs~---------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+ ......++++||++.++++.. ++.+.++|+.+++.+.++.... ...+|+|+| ||.
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-------Dg~---- 326 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-------DGA---- 326 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-------SSS----
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-------CCC----
Confidence 0 111223789999998887543 2356799999999988887433 578999999 882
Q ss_pred eEEEEEEe-CCCeEEEEECCCCeEEeeeecCCC
Q 008939 408 MYRFGSVG-QDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 408 ~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+++++.. .++.|.++|+.+.+.+..+..+..
T Consensus 327 -~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 327 -SDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp -CEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred -EEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 3677777 599999999999999988875433
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-07 Score=93.88 Aligned_cols=303 Identities=12% Similarity=0.099 Sum_probs=175.5
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCC--------CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSN--------SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~--------~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
+..+.++..+ .|+.+|.++++ .+-...... ........... +..+++++.++.|+.+|.++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~~g~l~a~d~~t----- 122 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTVS---GGHVYIGSEKAQVYALNTSD----- 122 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEEE---TTEEEEEETTSEEEEEETTT-----
T ss_pred CCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceEe---CCEEEEEcCCCEEEEEECCC-----
Confidence 3444444444 88888888755 444444321 11111111111 45788999999999999875
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
++.+... .. .......+ ... + . .++++..++.|+.+|..+ +.....+.... +.
T Consensus 123 G~~~W~~-~~--~~~~~~~p----~~~-~-~-~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~----------------~~ 175 (376)
T 3q7m_A 123 GTVAWQT-KV--AGEALSRP----VVS-D-G-LVLIHTSNGQLQALNEAD-GAVKWTVNLDM----------------PS 175 (376)
T ss_dssp CCEEEEE-EC--SSCCCSCC----EEE-T-T-EEEEECTTSEEEEEETTT-CCEEEEEECCC------------------
T ss_pred CCEEEEE-eC--CCceEcCC----EEE-C-C-EEEEEcCCCeEEEEECCC-CcEEEEEeCCC----------------Cc
Confidence 3332221 11 11111111 121 3 3 688888999999999876 32222111100 00
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCc-------eEEEEEcc--CCCEEEEEeCCC
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGA-------LLCCAWSM--DGKYILTGGEDD 363 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-------v~~l~~sp--dg~~l~sgs~dg 363 (548)
..+... ..... .+..++.+..++.|..+|..+++.+......... +..+...| .+..+++++.++
T Consensus 176 ~~~~~~----~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 176 LSLRGE----SAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp ---CCC----CCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred eeecCC----CCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence 000000 11111 1346777888999999999999988765532110 00000111 245678888899
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--CCC
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGG 441 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--~~~ 441 (548)
.|..+|.++++.+..... .....+... ++ .+..++.++.|..+|..+++.+....... ...
T Consensus 250 ~l~~~d~~tG~~~w~~~~--~~~~~~~~~--------~~-------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 312 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKREL--GSVNDFIVD--------GN-------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLT 312 (376)
T ss_dssp CEEEEETTTCCEEEEECC--CCEEEEEEE--------TT-------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCC
T ss_pred EEEEEECCCCcEEeeccC--CCCCCceEE--------CC-------EEEEEcCCCeEEEEECCCCcEEEeecccCCCccc
Confidence 999999999987765542 234455543 33 67777889999999999999887665211 111
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee-EEEEeCCeEEEEECCCeEEEEeC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS-GLIFTQESVLTVCREGHIKIWMR 512 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~-~l~fspd~l~t~s~Dg~I~iW~~ 512 (548)
.+.. .+..+.++..++.+..+|..+.+.+.........+. ......+.|+.++.||.|..|+.
T Consensus 313 ~~~~--------~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 313 SPVL--------YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp CCEE--------ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred CCEE--------ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 1221 235566666777788888888887777665333332 23444567888899999988863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-09 Score=99.79 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=107.9
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
........|+|+++.++++...++.|+.|+... . +..+..+...+..+++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g--~--------------------------~~~~~~~~~~~~gl~~d~ 95 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG--T--------------------------VDVLLDATAFTNGNAVDA 95 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS--C--------------------------EEEEEESCSCEEEEEECT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC--C--------------------------EEEEeCCCCccceeeECC
Confidence 345678999999986777777889999998732 1 233334456789999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEeeeec----CCceEEEEEccCCCEEEE----EeC-------------CCeEEEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQLICGGKSY----YGALLCCAWSMDGKYILT----GGE-------------DDLVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~s----gs~-------------dg~I~vw 368 (548)
+|+++++...++.|.+||.. ++........ ...+..++++|+|+++++ |.. .+.|..|
T Consensus 96 dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 96 QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99966665556889999986 5543222111 234678999999998876 332 2567888
Q ss_pred ECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC------CeEEEEECCCCe
Q 008939 369 SMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD------TRLLLWDLEMDE 429 (548)
Q Consensus 369 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D------g~i~lwd~~~~~ 429 (548)
|.++++..... .......++|+| || ..|..+... +.|.+||+..+.
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~sp-------dg------~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSP-------DE------QTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECT-------TS------SEEEEEECCC---CCCEEEEEEEETTE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcC-------CC------CEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 87666544333 344568899999 88 455555444 789999987665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=105.01 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=152.0
Q ss_pred CCceeEEeCCCCCEEEEec---CCeEEEEEccCCCCCCeEEEe-------cCCCCceEEEecCCCCCCceEEEEEc----
Q 008939 131 TSMTNTNFDGKGTYIIFNV---GDAIFISDLNSQDKDPIKSIH-------FSNSNPVCHAFDQDAKDGHDLLIGLN---- 196 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~---~d~v~vwd~~~~~~~~i~~~~-------~~~~~~~~~~~~p~~~~~~~l~~g~~---- 196 (548)
..+..++++++|+++++.. ++.++||.+..+ .+..+. .+-..+..++++++ +.++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g---~~~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD---GLIPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT---EEEESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC---CeecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcC
Confidence 5677899999999888743 123566666532 222111 12347899999998 655554433
Q ss_pred -CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---CCCcEEEEEcCCCCCCCCCccc
Q 008939 197 -SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 197 -dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
++.|.+||+.+. ++.....+......+...+..+++.|++..++++-. .++.|++||+... .....+..
T Consensus 91 ~~~~i~~~d~~tg------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~ 163 (343)
T 2qe8_A 91 SVPKLVAWDTLNN------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQG 163 (343)
T ss_dssp SCCEEEEEETTTT------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTT
T ss_pred CCCeEEEEECCCC------eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecC
Confidence 478999998751 222222222111123456789999987653555554 6789999998753 21111110
Q ss_pred ---c-cccceeeeecCC---CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-eEEEEeCC---CCe-----EEE-
Q 008939 273 ---I-KDQTQFSVAHPR---YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-YLRVFDYS---KEQ-----LIC- 335 (548)
Q Consensus 273 ---~-~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~---~~~-----~~~- 335 (548)
. .+...+...... ......+..|. ..+..++|+|+++.|+++..++ .|..++.. .+. ...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCC---CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred CCcccccccceeECCEEEEeccCCCceecee---cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 0 000000000000 00011111121 3578999999999998887766 45444431 110 000
Q ss_pred -eeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 336 -GGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 336 -~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
...++.+....++++++|.++++...++.|.+||.++++....... +-..+.+++|.+ +| +++++
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-------~g------~l~v~ 307 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-------DG------YLYFD 307 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-------TS------CEEEE
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-------CC------cEEEE
Confidence 1123344566799999999999998999999999966654333322 346789999988 87 56777
Q ss_pred EeCCCeEEEE
Q 008939 414 VGQDTRLLLW 423 (548)
Q Consensus 414 ~~~Dg~i~lw 423 (548)
....+.+.+|
T Consensus 308 ~~~~~~~~~f 317 (343)
T 2qe8_A 308 CNQLHHSAPL 317 (343)
T ss_dssp ECCGGGSGGG
T ss_pred eCcccccccc
Confidence 6655544433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=102.15 Aligned_cols=274 Identities=9% Similarity=-0.008 Sum_probs=168.9
Q ss_pred CCCCEEEEecC------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEEE
Q 008939 140 GKGTYIIFNVG------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYSV 203 (548)
Q Consensus 140 ~~g~~l~~~~~------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~iw 203 (548)
+++.++.+... +.|.++|+.+.+ .+..+.... .+ .++++|+ ++.|+++. .++.|.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~vG~-~P-gia~SpD---gk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTDGGF-LP-HPVAAED---GSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEECS-SC-EEEECTT---SSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEECCC-CC-ceEECCC---CCEEEEEeccccccccCCCCCEEEEE
Confidence 45555544332 589999999844 888887554 55 8999999 77788886 36789999
Q ss_pred Eeeecccccccceeeeeeec-cCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 204 SLRQQLQDVGKKLVGAHHYN-KDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
|..+ .++....... ............+.|+|+++ +|+++.. ++.|.+.|+.+..
T Consensus 155 D~~t------~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~k---------------- 211 (426)
T 3c75_H 155 DPVT------FLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKT---------------- 211 (426)
T ss_dssp CTTT------CCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTE----------------
T ss_pred ECCC------CcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCe----------------
Confidence 9876 2222222211 00000123456789999999 6676653 5789999998621
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCCCeEEEe----eeecCCc-eEEEEEccCCC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSKEQLICG----GKSYYGA-LLCCAWSMDGK 354 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~~~~~~~----~~~~~~~-v~~l~~spdg~ 354 (548)
.+..+.. ... ....|++ ..+++.+.||.+.+.++.+++.... +.....+ ...+.+.+++.
T Consensus 212 ----------vv~~I~v--~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 212 ----------FDRMLDV--PDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp ----------EEEEEEC--CSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred ----------EEEEEEc--CCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 1222221 111 2223332 4555666777777777755554421 1111111 12356899998
Q ss_pred EEEEEeCCCeEEEEECCCceeE--Eecc---C-------CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------
Q 008939 355 YILTGGEDDLVQVWSMEDRKVV--AWGE---G-------HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------ 416 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~--~~~~---~-------h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------ 416 (548)
.++.....+.|.+.|+...... ..+. . .......++++| |+. +++++...
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-------dg~-----rlyVa~~~~~~gth 345 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-------QSD-----RIYLLVDQRDEWKH 345 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-------GGT-----EEEEEEEECCTTCT
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-------CCC-----EEEEEecccccccc
Confidence 8877788899999999765321 1111 0 011122368898 762 34444331
Q ss_pred ---CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 417 ---DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 417 ---Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
++.|.+.|+.+.+.+..+.. ......|+|
T Consensus 346 k~~s~~VsVID~~T~kvv~~I~v------------------------------------------------g~~P~gia~ 377 (426)
T 3c75_H 346 KAASRFVVVLNAETGERINKIEL------------------------------------------------GHEIDSINV 377 (426)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEE------------------------------------------------EEEECEEEE
T ss_pred cCCCCEEEEEECCCCeEEEEEEC------------------------------------------------CCCcCeEEE
Confidence 35799999999888876643 113688999
Q ss_pred eCC---eEEEEE-CCCeEEEEeCCCCCc
Q 008939 494 TQE---SVLTVC-REGHIKIWMRPGVAE 517 (548)
Q Consensus 494 spd---~l~t~s-~Dg~I~iW~~~~~~~ 517 (548)
+|| .++++. .++.|.++|..+.+.
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 997 366776 599999999988764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-09 Score=101.14 Aligned_cols=301 Identities=14% Similarity=0.098 Sum_probs=178.5
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
....+.+|.+.+.+.+..|+.|| .++. .+.........+.++...++ + .|++++.+ |+.+|... +
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~--~~~~~~~~~~~~~~~~~~~~---g-~l~v~t~~--l~~~d~~g------~ 88 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGS--VKWFFKSGEIIECRPSIGKD---G-TIYFGSDK--VYAINPDG------T 88 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSC--EEESSCGGGEEEECCEETTT---T-EECCSSCE--EEEECCCG------G
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCc--EEEEEecCCCcccceEEecC---C-cEEEecCc--EEEECCCC------c
Confidence 34555666655444345788888 6543 33332222223344444443 3 46666655 88887532 1
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
.+..... .........+. ++ .|.+++.++.|+.+|.. +.... .
T Consensus 89 ~~~~~~~-------~~~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~--g~~~~-------------------------~ 131 (330)
T 3hxj_A 89 EKWRFDT-------KKAIVSDFTIF-ED--ILYVTSMDGHLYAINTD--GTEKW-------------------------R 131 (330)
T ss_dssp GGGGSCC------------CCEEEE-TT--EEEEECTTSEEEEECTT--SCEEE-------------------------E
T ss_pred EEEEEEC-------CCCcccCceEE-CC--EEEEEecCCEEEEEcCC--CCEEE-------------------------E
Confidence 1111000 11112222233 33 68888889999999876 22111 1
Q ss_pred eeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK 374 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~ 374 (548)
...+...+.++...+++. |..++.++.|..||.. ++.+..+......+.++...+++.++ .++ +.|..+| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc
Confidence 111223355566676776 5567788999999998 88777666555667778887888744 444 8899999 7777
Q ss_pred eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC-CCCceecCCCCccc
Q 008939 375 VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL-GGSPTFSTGSQSAH 453 (548)
Q Consensus 375 ~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 453 (548)
.+..+......+.++..++ +| .|..++.++.|..+|. +++.+..+..... ...+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~-------~g-------~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~------- 263 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISE-------DG-------TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG------- 263 (330)
T ss_dssp EEEEECCSSCCCSCCEECT-------TS-------CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC-------
T ss_pred EEEEEccCCcceeceEECC-------CC-------eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc-------
Confidence 7666665566788888887 76 4666777888988884 5565555544222 1222221
Q ss_pred cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeCCCCC
Q 008939 454 WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 454 ~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~~~~ 516 (548)
.+..+-+++.++.+..+|. +.+.+..+......+.++...++ .|..++.+|.+++...+...
T Consensus 264 ~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 264 NTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC----
T ss_pred CCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccccc
Confidence 1344555666666667774 55666666555666777877665 48889999999988866543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-08 Score=104.98 Aligned_cols=311 Identities=11% Similarity=0.133 Sum_probs=176.3
Q ss_pred CEEEEecC-CeEEEEEccCCCCCCeEEEecCCCC-----------ceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 143 TYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSN-----------PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 143 ~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~-----------~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
..+.+++. ..|+-+|.++++ .+-........ ...+++. +..|++++.|+.|+.+|.++
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~v~v~~~dg~l~AlDa~T--- 140 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGR--LIWKYDPQSDRHRAGEACCDAVNRGVAVW-----KGKVYVGVLDGRLEAIDAKT--- 140 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCC--EEEEECCCCCGGGGGGCTTCSCCCCCEEE-----TTEEEEECTTSEEEEEETTT---
T ss_pred CEEEEEcCCCeEEEEECCCCc--eeEEEcCCCCccccccccccCCCCccEEE-----CCEEEEEccCCEEEEEECCC---
Confidence 34444443 378888887765 44444322110 0111221 45789999999999999876
Q ss_pred ccccceeeeeee-ccC--CcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCccccc-ccc-ee
Q 008939 211 DVGKKLVGAHHY-NKD--GSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIK-DQT-QF 279 (548)
Q Consensus 211 ~~~~~~~~~~~~-~~~--~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~-~~~-~~ 279 (548)
++.+...... ... ......++ + .++ .++++. .+|.|+.||..+ ++....+.... +.. .+
T Consensus 141 --G~~~W~~~~~~~~~~~~~~~~sP~----v-~~g--~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 141 --GQRAWSVDTRADHKRSYTITGAPR----V-VNG--KVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp --CCEEEEEECCSCTTSCCBCCSCCE----E-ETT--EEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCC
T ss_pred --CCEeeeecCcCCCCCCccccCCcE----E-ECC--EEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCccccc
Confidence 4444332211 000 00111111 1 134 455554 368999999987 44443332111 000 00
Q ss_pred e-----eecCCCCCCCCeeEee---ecCCCeEEEEECCCCCEEEEEECCCe-------------------EEEEeCCCCe
Q 008939 280 S-----VAHPRYSKSNPIARWH---ICQGSINSIAFSTDGTYLATVGRDGY-------------------LRVFDYSKEQ 332 (548)
Q Consensus 280 ~-----~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~~~dg~-------------------v~vwd~~~~~ 332 (548)
. ....... . ..|. .+......++++|+..+|+.+..++. |..+|.++++
T Consensus 211 ~~~~~~~~~~~~~-g---~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~ 286 (689)
T 1yiq_A 211 EGKGMEIAAKTWF-G---DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE 286 (689)
T ss_dssp CSHHHHHHHTTCC-S---STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC
T ss_pred ccccccccccccC-C---ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc
Confidence 0 0000000 0 0000 11122336788898888998887764 9999999999
Q ss_pred EEEeeee--cC-------CceEEEEEccCCC---EEEEEeCCCeEEEEECCCceeEEeccC-CCCCeE------------
Q 008939 333 LICGGKS--YY-------GALLCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVVAWGEG-HNSWVS------------ 387 (548)
Q Consensus 333 ~~~~~~~--~~-------~~v~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~-h~~~V~------------ 387 (548)
.+..++. |. ..+.......+|+ .++.++.+|.++++|.++++++..... +..+..
T Consensus 287 ~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~ 366 (689)
T 1yiq_A 287 YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILD 366 (689)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEEC
T ss_pred eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccc
Confidence 9887764 21 1222223334665 788999999999999999988743321 111111
Q ss_pred --------------------------EEEEecCCCCCCCCCCccceeEEEEEEe--------------------------
Q 008939 388 --------------------------GVAFDSYWSQPNSDGTAETVMYRFGSVG-------------------------- 415 (548)
Q Consensus 388 --------------------------~v~~~p~~~~~~~dg~~~~~~~~l~s~~-------------------------- 415 (548)
.++|+| +. .++....
T Consensus 367 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-------~~------~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 367 EENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-------DT------GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp HHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-------TT------TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred hhhccccCCCCeeEeCCCcccccCCCcceECC-------CC------CEEEEeccccceeeeeccccccccccccccccC
Confidence 245665 43 1333321
Q ss_pred -------------------CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCC
Q 008939 416 -------------------QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLS 476 (548)
Q Consensus 416 -------------------~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~ 476 (548)
.++.|..||+.+++.+..+....+.....++. ....+..++.++.++.+|..+++
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------agglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST------AGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------TTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE------CCCEEEEECCCCcEEEEECCCCc
Confidence 14789999999999999887654333222222 23566778889999999999999
Q ss_pred ceEEeecCCCCe-eEEEEeCC
Q 008939 477 PLVAHRVHTEPL-SGLIFTQE 496 (548)
Q Consensus 477 ~~~~~~~h~~~V-~~l~fspd 496 (548)
.+..++.....+ .-+.|..+
T Consensus 508 ~lw~~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 508 KLWEQPAASGVMAAPVTYSVD 528 (689)
T ss_dssp EEEEEECSSCCCSCCEEEEET
T ss_pred cceeeeCCCCcccCceEEEEC
Confidence 998887553322 44666665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.4e-09 Score=111.76 Aligned_cols=200 Identities=15% Similarity=0.145 Sum_probs=122.2
Q ss_pred CceEEEecCCCCCCceEEEEEc-C----CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLN-S----GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~-d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
.+..++|+|+ +++|+.+.. . ..|++||+.+. +.+.... .......++|+ |++ .|+.+
T Consensus 130 ~l~~~~~SpD---g~~lAy~~~~~G~~~~~i~v~dl~tg-----~~~~~~~--------~~~k~~~~~Ws-Dg~-~l~y~ 191 (693)
T 3iuj_A 130 ALDQLSFSRD---GRILAYSLSLAGSDWREIHLMDVESK-----QPLETPL--------KDVKFSGISWL-GNE-GFFYS 191 (693)
T ss_dssp EEEEEEECTT---SSEEEEEEECSSCCEEEEEEEETTTC-----SEEEEEE--------EEEESCCCEEE-TTT-EEEEE
T ss_pred EEEEEEECCC---CCEEEEEEecCCCceEEEEEEECCCC-----CCCcccc--------CCceeccEEEe-CCC-EEEEE
Confidence 4667799998 777776543 2 35999999862 2221111 11223578899 998 56666
Q ss_pred eCCC-------------cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEE
Q 008939 250 HADG-------------NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLA 315 (548)
Q Consensus 250 ~~dg-------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~ 315 (548)
..+. .|++|++.+..... ..+..... |...+..+.|+|||++|+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~ 249 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDD----------------------RLVFGAIPAQHHRYVGATVTEDDRFLL 249 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGC----------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccc----------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence 6553 38889887532100 01111112 234577899999999886
Q ss_pred EEEC----CCeEEEEeCCCCe-EEEeeeecCCceEEEEEccCCCEEEEEeC-C---CeEEEEECCCcee--EEeccCCCC
Q 008939 316 TVGR----DGYLRVFDYSKEQ-LICGGKSYYGALLCCAWSMDGKYILTGGE-D---DLVQVWSMEDRKV--VAWGEGHNS 384 (548)
Q Consensus 316 s~~~----dg~v~vwd~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~-d---g~I~vwd~~~~~~--~~~~~~h~~ 384 (548)
.... +..|.++|+.++. ....+..+....... |+++|..|+..+. + +.|.++|+.++.. ...+..|..
T Consensus 250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 5543 2589999997763 233445555555554 6677766554443 3 5799999988654 334555666
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC--eEEEEECCCCe
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT--RLLLWDLEMDE 429 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg--~i~lwd~~~~~ 429 (548)
.+. .|++ ++. .++++...++ .|++||+..+.
T Consensus 329 ~~~--~~s~-------~g~-----~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 329 QVL--TVHS-------GSG-----YLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp SCE--EEEE-------ETT-----EEEEEEEETTEEEEEEECTTSCE
T ss_pred CEE--EEEE-------ECC-----EEEEEEEECCeeEEEEEECCCCe
Confidence 665 7888 762 3444444554 68999987544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-08 Score=97.96 Aligned_cols=214 Identities=8% Similarity=0.027 Sum_probs=128.8
Q ss_pred CCceEEEecCCCCCCceEEEEE--cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGL--NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA 251 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~--~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~ 251 (548)
..+..++++|+ ++.+++.. .++.+.||.+.. + ++.....+......+...+..|++.+++. ++++-..
T Consensus 17 ~~p~~va~~~~---g~~~v~~~~~~~~~~~l~~~~~-----g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPD---GRLFLSLHQFYQPEMQVAELTQ-----D-GLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNG 86 (343)
T ss_dssp SCEEEEEECTT---SCEEEEECGGGCCSCSEEEEET-----T-EEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECH
T ss_pred CCcceEEECCC---CCEEEEeCCCCCCceEEEEECC-----C-CeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCC
Confidence 68899999998 66666653 234355666542 1 12111111112223567899999999986 5554433
Q ss_pred -----CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEE---CCCe
Q 008939 252 -----DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVG---RDGY 322 (548)
Q Consensus 252 -----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~---~dg~ 322 (548)
+..|.+||+.++. ....+..... . ..+...+..+++++++..+ ++-. .++.
T Consensus 87 ~~~~~~~~i~~~d~~tg~-~~~~~~~~~~----------------~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQ-LSRVIYLPPP----------------I---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp HHHTSCCEEEEEETTTTE-EEEEEECCTT----------------T---SCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred CCcCCCCeEEEEECCCCe-EEEEEECChh----------------h---cccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 5789999987521 1111100000 0 0112456889999864444 4444 5789
Q ss_pred EEEEeCCCCeEEEeeeec-----------------------------CCceEEEEEccCCCEEEEEeCCC-eEEEEECC-
Q 008939 323 LRVFDYSKEQLICGGKSY-----------------------------YGALLCCAWSMDGKYILTGGEDD-LVQVWSME- 371 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~-----------------------------~~~v~~l~~spdg~~l~sgs~dg-~I~vwd~~- 371 (548)
|.+||+.+++....+..| ...+..++|+|||+.|+.+..++ .|..++..
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 999999888765544321 02367899999999888887665 45444432
Q ss_pred --Cc-----eeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 372 --DR-----KVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 372 --~~-----~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
.+ +... ...++......+++++ +| .++++...++.|.+||..+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-------~G------~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSEKPICDGISIDK-------DH------NIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEECCSCSCEEECT-------TC------CEEEEEGGGTEEEEEETTTTEE
T ss_pred hcCCCCChhhhhcceEecccCCCCceEEECC-------CC------CEEEEccCCCeEEEEECCCCCE
Confidence 11 0000 1112344566799998 88 7888888899999999855653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-06 Score=83.09 Aligned_cols=252 Identities=9% Similarity=-0.029 Sum_probs=153.2
Q ss_pred CCEEEEecCCeEEEEEccCCCCCC---eEEEecCCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeeccccccccee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDP---IKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLV 217 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~---i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~ 217 (548)
|.+|.++..+.|+.++++...... ...+......+..++|+++ +..|+++ ..++.|..+++... ...
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~---~~~ly~~d~~~~~I~~~~~~g~------~~~ 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGG------EPT 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSC------CCE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecC---CCEEEEEECCCCEEEEEecCCC------CcE
Confidence 356667666689999988643221 1112222246789999987 4445544 45678999998652 111
Q ss_pred eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 218 GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
.... . .......+++.|++..++++-...+.|.+++++... ...+ ...
T Consensus 72 ~~~~---~---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~------------------------~~~ 119 (267)
T 1npe_A 72 TIIR---Q---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVL------------------------FDT 119 (267)
T ss_dssp EEEC---T---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEE------------------------ECS
T ss_pred EEEE---C---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEE------------------------EEC
Confidence 1110 0 124678999999876455555667889999986311 0000 000
Q ss_pred cCCCeEEEEECCCCCEEEEEEC---CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCCCeEEEEECCCc
Q 008939 298 CQGSINSIAFSTDGTYLATVGR---DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGEDDLVQVWSMEDR 373 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~dg~I~vwd~~~~ 373 (548)
.......++++|++..|+.+.. .+.|.++++..................+++++++..|+. -...+.|.++|++..
T Consensus 120 ~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (267)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence 1145688999997666665554 368888888633221111122345788999998766655 445689999999865
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC--CCCCceecCCC
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP--LGGSPTFSTGS 449 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~--~~~~~~~~~~~ 449 (548)
.....+.+ ......++.. ++ .++++....+.|..+|..+++.+..+.... ....+++.+++
T Consensus 200 ~~~~~~~~-~~~P~gi~~d--------~~------~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 200 GRRKVLEG-LQYPFAVTSY--------GK------NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEEEC-CCSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ceEEEecC-CCCceEEEEe--------CC------EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 44433332 2334566653 33 566666677899999999999888876432 24455555443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-07 Score=94.78 Aligned_cols=297 Identities=12% Similarity=0.054 Sum_probs=172.3
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCC---cccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG---SVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG 264 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~ 264 (548)
+..|++++.++.|+.+|.++ ++.+.... ..... ......+.+.-.. ++. .+++++.++.|+.+|..++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-----G~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~~~g~l~a~d~~tG- 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-----GKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG-HVYIGSEKAQVYALNTSDG- 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-----CCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT-EEEEEETTSEEEEEETTTC-
T ss_pred CCEEEEEcCCCeEEEEEccC-----Cceeeeec-CccccccccccCcccccCceE-eCC-EEEEEcCCCEEEEEECCCC-
Confidence 55788888899999999865 23322211 10000 0001222222222 233 6888889999999998763
Q ss_pred CCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCce
Q 008939 265 AGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGAL 344 (548)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v 344 (548)
+....+.. .......... .+..+++++.++.|..+|.++++.+..........
T Consensus 124 ~~~W~~~~-------------------------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 124 TVAWQTKV-------------------------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp CEEEEEEC-------------------------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEeC-------------------------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 22211110 0000001111 13477788889999999999999887765432211
Q ss_pred -----EEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC----------e-EEEEEecCCCCCCCCCCcccee
Q 008939 345 -----LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW----------V-SGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 345 -----~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~----------V-~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
...... +..++++..++.|..+|.++++.+......... + ...... ++
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--------~~------ 240 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--------NG------ 240 (376)
T ss_dssp --CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--------TT------
T ss_pred eecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--------CC------
Confidence 112222 346788888999999999999877655422100 0 011111 33
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee-cCCCC
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-VHTEP 487 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-~h~~~ 487 (548)
.+..++.++.|..+|.++++.+....... ... ....+..+.++..+..+..+|..+.+.+.... .....
T Consensus 241 -~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~--------~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 310 (376)
T 3q7m_A 241 -VVFALAYNGNLTALDLRSGQIMWKRELGS-VND--------FIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL 310 (376)
T ss_dssp -EEEEECTTSCEEEEETTTCCEEEEECCCC-EEE--------EEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC
T ss_pred -EEEEEecCcEEEEEECCCCcEEeeccCCC-CCC--------ceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc
Confidence 57777889999999999999887655311 111 11224555666667788888888887776655 22333
Q ss_pred eeEEEEeCCeEEEEECCCeEEEEeCCCCCcccc-CC-CCcEE-EecCCCCceEeeecccccc
Q 008939 488 LSGLIFTQESVLTVCREGHIKIWMRPGVAESQS-SS-SETVL-STSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 488 V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~-~~-~~~v~-~~s~d~~~l~s~~~~g~~~ 546 (548)
+.......+.|+.++.+|.|..+|..+++..-. .. ...+. .....+..|..++..|.+|
T Consensus 311 ~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~ 372 (376)
T 3q7m_A 311 LTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVY 372 (376)
T ss_dssp CCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEE
T ss_pred ccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEE
Confidence 445555667899999999999999887663211 11 12222 1112344566666666554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-07 Score=100.59 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=171.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEEcC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYEKS 261 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd~~ 261 (548)
+..|++++.++.|+.+|.++ ++.+..... ..+.. ....+..--...++ .++++.. +|.|+.||..
T Consensus 128 ~~~v~v~~~dg~l~alD~~t-----G~~~W~~~~-~~~~~-~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAAT-----GKEVWHQNT-FEGQK-GSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp TTEEEEECTTSEEEEEETTT-----CCEEEEEET-TTTCC-SSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEeeecC-CcCcC-cCcccccCcEEECC--EEEEEecccccCCCCEEEEEECC
Confidence 45789999999999999876 344332211 10000 00111110011133 4555543 6899999998
Q ss_pred CCCCCCCCcccccccc-eeeeecCCCCCCCCeeEee---------ecCCCeEEEEECCCCCEEEEEECCC----------
Q 008939 262 KDGAGDSSFPVIKDQT-QFSVAHPRYSKSNPIARWH---------ICQGSINSIAFSTDGTYLATVGRDG---------- 321 (548)
Q Consensus 262 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~sp~g~~l~s~~~dg---------- 321 (548)
+ ++....+....... ....... .......|. ........++++|++.+|+.+..++
T Consensus 199 t-G~~~W~~~~~~~~~~~~~~~~~---~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~ 274 (677)
T 1kb0_A 199 T-GERKWRWFSVPGDPSKPFEDES---MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSP 274 (677)
T ss_dssp T-CCEEEEEESSCCCTTSCCSSHH---HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred C-CcEEEEeccCCCCccccccccc---cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCc
Confidence 7 44333332211100 0000000 000000011 1122334678899888888887664
Q ss_pred ---------eEEEEeCCCCeEEEeeee--cC-------CceEEEEEccCC---CEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 322 ---------YLRVFDYSKEQLICGGKS--YY-------GALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 322 ---------~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
.|..+|.++++.+..++. |. .....+....+| +.++.++.+|.|+++|.++++.+..+.
T Consensus 275 ~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 275 KGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 599999999999887654 21 112233444578 678999999999999999999876554
Q ss_pred CC-CCCeE----------------------------------EEEEecCCCCCCCCCCccceeEEEEEEeC---------
Q 008939 381 GH-NSWVS----------------------------------GVAFDSYWSQPNSDGTAETVMYRFGSVGQ--------- 416 (548)
Q Consensus 381 ~h-~~~V~----------------------------------~v~~~p~~~~~~~dg~~~~~~~~l~s~~~--------- 416 (548)
.. ..+.. .++|+| ++ .++.+...
T Consensus 355 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-------~~------~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 355 FVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-------QT------GLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp SSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-------TT------TEEEEEEEECCCEEEEC
T ss_pred ccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-------CC------CEEEEeChhcceeeecc
Confidence 21 11111 356666 54 24443322
Q ss_pred ----------------------------------CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 417 ----------------------------------DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 417 ----------------------------------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
.+.|..||+.+++.+..+....+.....+... +..+..++
T Consensus 422 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~------g~~v~~g~ 495 (677)
T 1kb0_A 422 KKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTA------GNVVFQGT 495 (677)
T ss_dssp TTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEET------TTEEEEEC
T ss_pred cccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeC------CCEEEEEC
Confidence 27899999999999988876443333333322 34566778
Q ss_pred cCCCCceeecCCCCceEEeecCCC-CeeEEEEeCCe---EEEEEC----------------CCeEEEEeCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTE-PLSGLIFTQES---VLTVCR----------------EGHIKIWMRPG 514 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~-~V~~l~fspd~---l~t~s~----------------Dg~I~iW~~~~ 514 (548)
.++.++.+|..+.+.+..+..... .-.-+.|..++ ++..+. .+.+..|.++.
T Consensus 496 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 496 ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 889999999999999988875432 22345565552 443333 46788888774
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-07 Score=99.17 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=172.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccC----cce-EEEEEecCCCcEEEEEeCCCcEEEEEcCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN----SRC-TSVTWVPGGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~----~~v-~~l~~~p~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
+..|++++.++.|+.+|.++ ++.+..... ........ ..+ ..+.. .+. .+++++.|+.|+.+|..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t-----G~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~--~~g-~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD-----GRLIWKYDP-QSDRHRAGEACCDAVNRGVAV--WKG-KVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT-----CCEEEEECC-CCCGGGGGGCTTCSCCCCCEE--ETT-EEEEECTTSEEEEEETTT
T ss_pred CCEEEEEcCCCeEEEEECCC-----CceeEEEcC-CCCccccccccccCCCCccEE--ECC-EEEEEccCCEEEEEECCC
Confidence 55788888899999999876 344332211 00000000 000 11222 234 788899999999999987
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC---CCCEEEEEE------CCCeEEEEeCCCCeE
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST---DGTYLATVG------RDGYLRVFDYSKEQL 333 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~g~~l~s~~------~dg~v~vwd~~~~~~ 333 (548)
++....+....+. .....+..+| ++. ++++. .++.|..||.++|++
T Consensus 141 -G~~~W~~~~~~~~-----------------------~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 141 -GQRAWSVDTRADH-----------------------KRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp -CCEEEEEECCSCT-----------------------TSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred -CCEeeeecCcCCC-----------------------CCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcE
Confidence 4333322211000 0000111112 443 44443 378999999999999
Q ss_pred EEeeeecC-------------------------------CceEEEEEccCCCEEEEEeCCCe------------------
Q 008939 334 ICGGKSYY-------------------------------GALLCCAWSMDGKYILTGGEDDL------------------ 364 (548)
Q Consensus 334 ~~~~~~~~-------------------------------~~v~~l~~spdg~~l~sgs~dg~------------------ 364 (548)
+..+.... .....++++|+..+++.+..++.
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 87764210 01125788998889999988764
Q ss_pred -EEEEECCCceeEEeccC--CCC-------CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 365 -VQVWSMEDRKVVAWGEG--HNS-------WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 365 -I~vwd~~~~~~~~~~~~--h~~-------~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
|..||.++++.+-.++. |.. .+....... +|. ....++.++.+|.|+++|.++++++...
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-------~G~---~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-------DGK---PRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-------TTE---EEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-------CCc---EEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 99999999998866653 321 122222222 451 1136888999999999999999998654
Q ss_pred ecCCCC----------------------------------------CCceecCCCCccc------------------cC-
Q 008939 435 RRGPLG----------------------------------------GSPTFSTGSQSAH------------------WD- 455 (548)
Q Consensus 435 ~~~~~~----------------------------------------~~~~~~~~~~~~~------------------~d- 455 (548)
+..+.. ..+++.+...... +.
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 432100 0022222211000 00
Q ss_pred --Ceeeecc------------------cCCCCceeecCCCCceEEeecCCCCeeEEEEeC--CeEEEEECCCeEEEEeCC
Q 008939 456 --NVCPVGT------------------LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQ--ESVLTVCREGHIKIWMRP 513 (548)
Q Consensus 456 --~~~~~g~------------------~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fsp--d~l~t~s~Dg~I~iW~~~ 513 (548)
..+..+. .++.+..||+.+.+.+-.+..+.. +..-.+.. ..++.++.||.|+.||..
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECC
Confidence 0000010 124477789999888887776543 33323333 358889999999999998
Q ss_pred CCCcc-ccCCC----CcEEEecCCCCceEe
Q 008939 514 GVAES-QSSSS----ETVLSTSSKDKPLLS 538 (548)
Q Consensus 514 ~~~~~-~~~~~----~~v~~~s~d~~~l~s 538 (548)
++++. ..... ...+.++.||+..++
T Consensus 505 tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 505 TGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 87732 22111 223456788875444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-10 Score=114.74 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=101.1
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+..+++++.||.|+.||..+ ++.+... .. ..+.+..+..++. ++++++.||.|+.||..++ +..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~t-----G~~~W~~-~~--------~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG-~~~ 72 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRT-----GSIKWTL-KE--------DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNN-EGL 72 (369)
T ss_dssp TTEEEEEETTSEEEEEETTT-----CCEEEEE-EC--------CCSCCCC-----C-CEEECTTTCCEEEC------CCS
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEEEEe-cC--------CCceecceEcCCC-EEEEeCCCCEEEEEECCCC-cee
Confidence 66899999999999999876 3333221 11 2333444456666 6777889999999998763 222
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..++..... .. ...++ +. ++..|++++.|+.|+.||.++|+.+..+..+. ..
T Consensus 73 w~~~~~~~~-~~------------------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~ 124 (369)
T 2hz6_A 73 TKLPFTIPE-LV------------------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----AD 124 (369)
T ss_dssp EECSCCHHH-HH------------------TTCSC----C------CCCCEEEEEEEEECCC------------------
T ss_pred eeeeccCcc-cc------------------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cc
Confidence 221110000 00 00111 11 34467778889999999999999987776543 24
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.++|++..+++++.|+.|+.||.++++.+..+..+. .....+.+ ....++ .++.++.|+.|..||.++
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~---~~~~~~-------~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPED---DVDYKM-------SHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCC---CTTCCC-------CEEEEETSCEEEEECTTT
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccC---Cccccc-------eEEEECCCCEEEEEECCC
Confidence 566788899999999999999999998765543211 11111221 000013 466788899999999999
Q ss_pred CeEEeeeecCC
Q 008939 428 DEIVVPLRRGP 438 (548)
Q Consensus 428 ~~~~~~~~~~~ 438 (548)
++.+...+...
T Consensus 193 G~~~W~~~~~~ 203 (369)
T 2hz6_A 193 GDVLWIQNYAS 203 (369)
T ss_dssp CCEEEEEECSS
T ss_pred CcEEEEecCCC
Confidence 99988876533
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-07 Score=92.74 Aligned_cols=244 Identities=10% Similarity=0.115 Sum_probs=147.3
Q ss_pred EEEEe--cCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC
Q 008939 235 SVTWV--PGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT 312 (548)
Q Consensus 235 ~l~~~--p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~ 312 (548)
+..++ ++.+.+++.+..++.|+|+|+.++.........++. ..+.. +........+...|+|
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~-~~~~~--------------~~g~s~Ph~~~~~pdG- 149 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP-EEVKK--------------VSGYSRLHTVHCGPDA- 149 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH-HHHHH--------------HHCEEEEEEEEECSSC-
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech-hhccc--------------ccCCCcccceeECCCe-
Confidence 33456 778866777888999999999753221111111100 00000 0000134567788999
Q ss_pred EEEEEECC------CeEEEEeCCCCeEEEeeeecCC---ceEEEEEccCCCEEEEEe-------------------CCCe
Q 008939 313 YLATVGRD------GYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKYILTGG-------------------EDDL 364 (548)
Q Consensus 313 ~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~sgs-------------------~dg~ 364 (548)
+++++..+ +.|.++|.++.+.+..+..... --..+-|+|+++.+++.. .++.
T Consensus 150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~ 229 (462)
T 2ece_A 150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR 229 (462)
T ss_dssp EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence 66666555 7899999999999888763222 234578899999888874 3689
Q ss_pred EEEEECCCceeEEeccCC--CCCeEEEEE--ecCCCCCCCCCCccceeEEEEEEe-----CCCeEEEEECCCCeEEeeee
Q 008939 365 VQVWSMEDRKVVAWGEGH--NSWVSGVAF--DSYWSQPNSDGTAETVMYRFGSVG-----QDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h--~~~V~~v~~--~p~~~~~~~dg~~~~~~~~l~s~~-----~Dg~i~lwd~~~~~~~~~~~ 435 (548)
|.+||+.+++.+.++..- ......|.| +| +|. +.++++- .+++|.+|....++... .+
T Consensus 230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-------dg~-----~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~ 296 (462)
T 2ece_A 230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-------TKL-----MGFINMVVSLKDLSSSIWLWFYEDGKWNA-EK 296 (462)
T ss_dssp EEEEETTTTEEEEEEESCTTEEEEEEEEECSST-------TCC-----EEEEEEEEETTTCCEEEEEEEEETTEEEE-EE
T ss_pred EEEEECCCCcEeeEEecCCCCCccceeEeeECC-------CCC-----EEEEEEeeeccCCCceEEEEEecCCceeE-EE
Confidence 999999999888877642 133455656 88 882 3445555 67889888876543211 11
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc---e----EEeecCCCCeeEEEEeCCe---EEEEECCC
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP---L----VAHRVHTEPLSGLIFTQES---VLTVCREG 505 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~---~----~~~~~h~~~V~~l~fspd~---l~t~s~Dg 505 (548)
. .|++.... + ..+.+-......|.+++|+ .++.-..+
T Consensus 297 v---------------------------------Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 297 V---------------------------------IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp E---------------------------------EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred E---------------------------------EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 0 00000000 0 0000002347889999984 45555679
Q ss_pred eEEEEeCCCCC-ccc-----cC-------C--------CCcEEEecCCCCceEeee
Q 008939 506 HIKIWMRPGVA-ESQ-----SS-------S--------SETVLSTSSKDKPLLSSK 540 (548)
Q Consensus 506 ~I~iW~~~~~~-~~~-----~~-------~--------~~~v~~~s~d~~~l~s~~ 540 (548)
.|.++|+.... ... .+ + ...-+.++|||++|.+++
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999985321 110 11 0 245568999999999988
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-05 Score=86.93 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=190.7
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe--------cCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH--------FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~--------~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
...|.++..+++|.+.+...+ .|.+||..+. .+..+. .....+.++..+++ + .|.+|+.++-|.
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~D~~---g-~lWigt~~~Gl~ 333 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD---SFASYSSNPVENGSLSQRSVRSIFMDSQ---G-GMWLGTYFGGLN 333 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETTTT---EEEEECCCTTSTTSCSSSCEEEEEECTT---S-CEEEEESSSCEE
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC---eEEEEecCCCCCCCCCCCcEEEEEEeCC---c-CEEEEECCCCeE
Confidence 456888999999887766544 7889997653 233332 12346788888776 2 488899988899
Q ss_pred EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
.|+.... ..................|.++...+++. |..|..++-|..||..+..- ..+.....
T Consensus 334 ~~~~~~~------~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~------ 397 (795)
T 4a2l_A 334 YYHPIRN------RFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRF--TSYTLQED------ 397 (795)
T ss_dssp EECGGGG------SSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCE--EEECCC--------
T ss_pred EeCCCcc------cceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcE--EEEecCCC------
Confidence 9986541 11111100111122456799999888876 77788887899998764210 00000000
Q ss_pred ecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee----ecCCceEEEEEccCCCEEE
Q 008939 282 AHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK----SYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~l~~spdg~~l~ 357 (548)
.+- .......|.++...+++++|..|+.++-|.+||..+++...... .....|.++...++|.+.+
T Consensus 398 --------~~~--~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 398 --------ESA--RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred --------Ccc--cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence 000 00112568999998888857777887789999998876543221 1245789999988887544
Q ss_pred EEeCCCeEEEEECCCceeEEecc------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 358 TGGEDDLVQVWSMEDRKVVAWGE------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
|+. +-|.+||.++++...... .....|.++..++ +| . |..++. +-|..||..+++.
T Consensus 468 -gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-------~g------~-lWigt~-~Gl~~~~~~~~~~- 529 (795)
T 4a2l_A 468 -GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-------HK------R-LWIGGE-EGLSVFKQEGLDI- 529 (795)
T ss_dssp -EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-------TC------C-EEEEES-SCEEEEEEETTEE-
T ss_pred -Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-------CC------C-EEEEeC-CceEEEeCCCCeE-
Confidence 444 458889988776543321 1246789999887 77 3 444444 5688899887765
Q ss_pred eeeecC--CC----CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec----CCCCeeEEEEeCCe-EEE
Q 008939 432 VPLRRG--PL----GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV----HTEPLSGLIFTQES-VLT 500 (548)
Q Consensus 432 ~~~~~~--~~----~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~----h~~~V~~l~fspd~-l~t 500 (548)
.+... .. .....+..+. +..+-+++.. .+..+|..... ...+.. ....|.++...+++ |..
T Consensus 530 -~~~~~~~~~~l~~~~i~~i~~d~-----~g~lWigT~~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi 601 (795)
T 4a2l_A 530 -QKASILPVSNVTKLFTNCIYEAS-----NGIIWVGTRE-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGILEDSFGRLWL 601 (795)
T ss_dssp -EECCCSCSCGGGGSCEEEEEECT-----TSCEEEEESS-CEEEEETTTTE-EEEECGGGTCSCSCEEEEEECTTSCEEE
T ss_pred -EEecCCCCCCCCCCeeEEEEECC-----CCCEEEEeCC-CceeECCCCCc-EEEeCCCCCCchhheEEEEECCCCCEEE
Confidence 22210 00 0001111111 2223333333 45556654332 222211 13468888888764 666
Q ss_pred EECCCeEEEEeCCCCC
Q 008939 501 VCREGHIKIWMRPGVA 516 (548)
Q Consensus 501 ~s~Dg~I~iW~~~~~~ 516 (548)
++.. -|..|+..+..
T Consensus 602 ~t~~-Gl~~~~~~~~~ 616 (795)
T 4a2l_A 602 STNR-GISCFNPETEK 616 (795)
T ss_dssp EETT-EEEEEETTTTE
T ss_pred EcCC-ceEEEcCCCCc
Confidence 6654 45667876554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-10 Score=112.16 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC
Q 008939 242 GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG 321 (548)
Q Consensus 242 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 321 (548)
+. .+++++.||.|+.||..+ ++....+ .. +.+.+..+..++..+++++.|+
T Consensus 9 ~~-~v~~gs~dg~v~a~d~~t-G~~~W~~-------------------------~~--~~~~s~p~~~~g~~~v~~s~dg 59 (369)
T 2hz6_A 9 ET-LLFVSTLDGSLHAVSKRT-GSIKWTL-------------------------KE--DPVLQVPTHVEEPAFLPDPNDG 59 (369)
T ss_dssp TT-EEEEEETTSEEEEEETTT-CCEEEEE-------------------------EC--CCSCCCC-----CCEEECTTTC
T ss_pred CC-EEEEEcCCCEEEEEECCC-CCEEEEe-------------------------cC--CCceecceEcCCCEEEEeCCCC
Confidence 44 789999999999999886 3222211 11 3333444455677777778999
Q ss_pred eEEEEeCCCCeEEEeeeecCC-ceE-EEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYG-ALL-CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~-~v~-~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 399 (548)
.|+.||.++++.+..+..+.. .+. +..+. ++..+++++.|+.|+.||.++++.+..+..+. .+.++|
T Consensus 60 ~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p------ 128 (369)
T 2hz6_A 60 SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP------ 128 (369)
T ss_dssp CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------
T ss_pred EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc------
Confidence 999999999887665543211 110 01111 34567888889999999999999887776543 234455
Q ss_pred CCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceE
Q 008939 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV 479 (548)
Q Consensus 400 ~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~ 479 (548)
++ ..+++++.|+.|+.||.++++.+..+.... ...+.+..+. ..+..+.++..++.+..+|..+++.+.
T Consensus 129 -~~------~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~---~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 129 -ST------SLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDV---DYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCT---TCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred -cC------CEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCc---cccceEEEECCCCEEEEEECCCCcEEE
Confidence 55 478888999999999999999877665321 1112221111 123455566677788888888887776
Q ss_pred EeecCCCCeeE-EEEeCCe
Q 008939 480 AHRVHTEPLSG-LIFTQES 497 (548)
Q Consensus 480 ~~~~h~~~V~~-l~fspd~ 497 (548)
.+.. ..++.. ..+++++
T Consensus 198 ~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 198 IQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EEEC-SSCEEEEEECTTSS
T ss_pred EecC-CCceEEEEEecCCc
Confidence 6653 344433 3344444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-05 Score=84.76 Aligned_cols=326 Identities=13% Similarity=0.108 Sum_probs=192.1
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEec--------CCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHF--------SNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~--------~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
...+..+..+.+|.+.+...++.|.+||..+.. +..+.. ....+.++..+++ + .|.+|+.+ -|.
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~i~~d~~---g-~lWigt~~-Gl~ 285 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKE---IKNYLHSPSNPKSISSNYIRSLAMDSQ---N-RLWIGTFN-DLN 285 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE---EEEECCCTTCTTSCSCSBEEEEEECTT---S-CEEEEESS-CEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe---EEEeecCCCCccccCCCeEEEEEEcCC---C-CEEEEeCC-hhh
Confidence 456777888888877666555679999977532 333322 2345788888765 3 47777776 588
Q ss_pred EEEeeecccccccceeeeeee-ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 202 SVSLRQQLQDVGKKLVGAHHY-NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+||.... ........ ..........|.+|...+++. |..|..++-|..|+..... ...+......
T Consensus 286 ~~~~~~~------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~---- 351 (795)
T 4a2l_A 286 IYHEGTD------SFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR--FKNIRNIPYK---- 351 (795)
T ss_dssp EEETTTT------EEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS--SEEECCCTTS----
T ss_pred eEcCCCC------eEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc--ceEEcCCCCC----
Confidence 8886541 11111100 011223457899999998886 7788888889999865421 0000000000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee--------cCCceEEEEEccC
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS--------YYGALLCCAWSMD 352 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~v~~l~~spd 352 (548)
+ ......|.++...++|. |..|+.++-|..||..+++....... ....|.++...++
T Consensus 352 ---------~-----~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 352 ---------N-----SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp ---------S-----SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred ---------C-----CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 0 00125689999988886 45577777799999987765432211 1356899999889
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecc----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGE----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
+++|.+|+.++-|.+||.++++...... .+...|.++..++ +| . |..++. +-|.+||..++
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-------~g------~-lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-------EG------N-LWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-------SS------C-EEEEES-SCEEEEETTTT
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-------CC------C-EEEEec-CceeEEeCCCC
Confidence 8867778887889999998876543322 2346799999887 77 3 444444 45889998887
Q ss_pred eEEeeeecC---C--CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee-------cCCCCeeEEEEeCC
Q 008939 429 EIVVPLRRG---P--LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR-------VHTEPLSGLIFTQE 496 (548)
Q Consensus 429 ~~~~~~~~~---~--~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~-------~h~~~V~~l~fspd 496 (548)
+........ . ......+..+. +..+-+++. ..+..++...... .+. .....|.+|...++
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~-----~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDS-----HKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECT-----TCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred eEEEccccccccccCCceEEEEEECC-----CCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC
Confidence 654322110 0 00001111111 222323333 3455555433322 111 23457889988887
Q ss_pred e-EEEEECCCeEEEEeCCCCC
Q 008939 497 S-VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 497 ~-l~t~s~Dg~I~iW~~~~~~ 516 (548)
+ |..++.. -|..||..+..
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTE
T ss_pred CCEEEEeCC-CceeECCCCCc
Confidence 5 6666665 56778876554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-07 Score=97.44 Aligned_cols=257 Identities=12% Similarity=0.136 Sum_probs=152.0
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecC-CCC-ceEEEecCCCCCCceEEEEEc------CCcEEEEEeeeccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS-NSN-PVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~-~~~-~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~~~~ 212 (548)
+..++++..+ .|+.+|..+++ .+-..... ... ...+.-.|.. .+..++++.. +|.|+.||.++
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~t----- 199 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAET----- 199 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTT-----
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCC-----
Confidence 4455555544 89999998865 66555543 100 0000011110 1345666664 68899999876
Q ss_pred ccceeeeeeeccCC--------------------c-----ccCcceEEEEEecCCCcEEEEEeCCC--------------
Q 008939 213 GKKLVGAHHYNKDG--------------------S-----VNNSRCTSVTWVPGGDGAFVVGHADG-------------- 253 (548)
Q Consensus 213 ~~~~~~~~~~~~~~--------------------~-----~~~~~v~~l~~~p~~~~~l~s~~~dg-------------- 253 (548)
++.+.......... . ........+++.|++. +++.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCC
Confidence 33332211100000 0 0111224678899888 777777664
Q ss_pred -----cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCC---CEEEEEECCCeEEE
Q 008939 254 -----NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDG---TYLATVGRDGYLRV 325 (548)
Q Consensus 254 -----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~~~dg~v~v 325 (548)
.|+.+|.++ ++....++..... .+ .+.. ......+....+| ..|+.++.+|.|.+
T Consensus 279 ~~~~~sv~AlD~~T-G~~~W~~~~~~~d-~w--------------d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~ 341 (677)
T 1kb0_A 279 NLYLASIVALDPDT-GKYKWHYQETPGD-NW--------------DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFV 341 (677)
T ss_dssp CTTTTEEEEECTTT-CCEEEEEESSTTC-CS--------------CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CeeeEEEEEEECCC-CCEEEEEecCCCc-cc--------------cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence 488888776 3333333221100 00 0000 0122223333467 67889999999999
Q ss_pred EeCCCCeEEEeeeecC----------C-ce------------------------EEEEEccCCCEEEEEeCC--------
Q 008939 326 FDYSKEQLICGGKSYY----------G-AL------------------------LCCAWSMDGKYILTGGED-------- 362 (548)
Q Consensus 326 wd~~~~~~~~~~~~~~----------~-~v------------------------~~l~~spdg~~l~sgs~d-------- 362 (548)
+|.++++++...+... + ++ ..++++|+..++++...+
T Consensus 342 lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 342 LDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp EETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred EECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 9999999887654211 0 01 146889998888776432
Q ss_pred -----------------------------------CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccce
Q 008939 363 -----------------------------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETV 407 (548)
Q Consensus 363 -----------------------------------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~ 407 (548)
+.|..||+.+++.+-.+. +...+....+.. ++
T Consensus 422 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-------~g----- 488 (677)
T 1kb0_A 422 KKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-------AG----- 488 (677)
T ss_dssp TTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-------TT-----
T ss_pred cccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEe-------CC-----
Confidence 789999999999877665 333444444544 44
Q ss_pred eEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 408 MYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 408 ~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+++.++.|+.|++||+++++++..+....
T Consensus 489 -~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 489 -NVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp -TEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred -CEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 367778999999999999999999988654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-08 Score=93.28 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=165.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
...|++++.++.|+.|| .+ ++.... .. .....+.++...+++. |+++..+ |+.||.. +...
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~-----g~~~~~-~~------~~~~~~~~~~~~~~g~--l~v~t~~--l~~~d~~--g~~~ 90 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TD-----GSVKWF-FK------SGEIIECRPSIGKDGT--IYFGSDK--VYAINPD--GTEK 90 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TT-----SCEEES-SC------GGGEEEECCEETTTTE--ECCSSCE--EEEECCC--GGGG
T ss_pred CCeEEEEcCCCEEEEEC-CC-----CcEEEE-Ee------cCCCcccceEEecCCc--EEEecCc--EEEECCC--CcEE
Confidence 34578888889999998 54 222111 00 1234456666666664 6666655 8888752 3222
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCC 347 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l 347 (548)
..+.... .......+. +..|..++.++.|..+|.. ++.+.........+.++
T Consensus 91 ~~~~~~~-------------------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 142 (330)
T 3hxj_A 91 WRFDTKK-------------------------AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP 142 (330)
T ss_dssp GGSCC------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred EEEECCC-------------------------CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence 2221100 111112222 4467778889999999998 77776666555556777
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 348 ~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...+++. |..++.++.|..+|.+ ++.+..+......+.++.+.+ +| . |..++ +.|..+| .+
T Consensus 143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-------~g------~-l~v~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-------DG------T-IYFGS--DKVYAIN-PD 203 (330)
T ss_dssp EECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-------TC------C-EEEES--SSEEEEC-TT
T ss_pred EEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-------CC------E-EEEEe--CEEEEEC-CC
Confidence 7777776 6667788999999998 777666655556677777766 66 3 44444 8899999 77
Q ss_pred CeEEeeeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCC
Q 008939 428 DEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREG 505 (548)
Q Consensus 428 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg 505 (548)
++.+...... .....+....+ ..+-+++.+..+..++ +....+..+......+..+.+.++ .|..++.+|
T Consensus 204 g~~~~~~~~~~~~~~~~~~~~~-------g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~g 275 (330)
T 3hxj_A 204 GTEKWNFYAGYWTVTRPAISED-------GTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDG 275 (330)
T ss_dssp SCEEEEECCSSCCCSCCEECTT-------SCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEEECTTC
T ss_pred CcEEEEEccCCcceeceEECCC-------CeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEEecCCC
Confidence 7776655532 22333443333 2344444455555555 344444445444444555666654 588899999
Q ss_pred eEEEEeCCCCCccccCCCCc-EE--EecCCCCceEeeeccccc
Q 008939 506 HIKIWMRPGVAESQSSSSET-VL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 506 ~I~iW~~~~~~~~~~~~~~~-v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.|..+|..+........... +. .+.++++ |..++..|.+
T Consensus 276 gl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~ 317 (330)
T 3hxj_A 276 HLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKF 317 (330)
T ss_dssp EEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCE
T ss_pred CEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeE
Confidence 99999964332222221122 22 3445665 4455555543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-07 Score=94.68 Aligned_cols=226 Identities=11% Similarity=0.048 Sum_probs=141.9
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEE-C-CCCCEEEEE
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAF-S-TDGTYLATV 317 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-s-p~g~~l~s~ 317 (548)
||+.+++....++.|.+.|+++. +....+... ...+..+++ + |++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~--------------------------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVM--------------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT--------------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCc--------------------------eEeeEEeCCCCCCCcceeeeecCCCcEEEEe
Confidence 77745555556778999999872 112222221 145788888 5 899999888
Q ss_pred EC------------------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC----------------
Q 008939 318 GR------------------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---------------- 363 (548)
Q Consensus 318 ~~------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---------------- 363 (548)
+. ++.+.+.|.++.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 52 3579999999999888876432 356688999999999888553
Q ss_pred ----------------------eEEEEECCC--cee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 364 ----------------------LVQVWSMED--RKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 364 ----------------------~I~vwd~~~--~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
.|.|.|.++ ++. +..+. -.....++.++| ||. +.++++..+.
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sP-------DGk-----~v~V~~~~s~ 299 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAP-------DKK-----HLCVAGKLSP 299 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECT-------TSS-----EEEEECTTSS
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcC-------CCC-----EEEEeCCCCC
Confidence 366666666 333 33333 122445789999 993 4556666789
Q ss_pred eEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe-
Q 008939 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES- 497 (548)
Q Consensus 419 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~- 497 (548)
+|.++|+.+.+... .. .++ +....+..... ......++|+|++
T Consensus 300 ~VsVid~~~~~~~~--~~-------------------------~l~--------~~~~v~~~v~v-G~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 300 TVTVLDVTRFDAVF--YE-------------------------NAD--------PRSAVVAEPEL-GLGPLHTAFDGRGN 343 (595)
T ss_dssp BEEEEEGGGHHHHH--HS-------------------------CCC--------GGGGEEECCBC-CSCEEEEEECTTSE
T ss_pred eEEEEECccccccc--cc-------------------------ccC--------cccceEEEcCC-CCCcceEEECCCCe
Confidence 99999998643210 00 000 00001111111 2456889999986
Q ss_pred -EEEEECCCeEEEEeCCCC----------Cccc---cCCCCc-EE-----EecCCCCceEeeecc
Q 008939 498 -VLTVCREGHIKIWMRPGV----------AESQ---SSSSET-VL-----STSSKDKPLLSSKVV 542 (548)
Q Consensus 498 -l~t~s~Dg~I~iW~~~~~----------~~~~---~~~~~~-v~-----~~s~d~~~l~s~~~~ 542 (548)
.++.-.|++|..|++... .... .+.... .. .++|||++|+++...
T Consensus 344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 456779999999998651 1100 011111 11 567999999998765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-05 Score=72.26 Aligned_cols=191 Identities=9% Similarity=-0.037 Sum_probs=115.2
Q ss_pred eEEEEEcCCcEEEEEeeecccccc--cceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVG--KKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGD 267 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~ 267 (548)
+|+.+.. +.|+.+++........ ..+.. .....+..++|++++..++++-..++.|.+++++... ..
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~ 71 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLH---------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PT 71 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEE---------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeec---------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cE
Confidence 4555553 4788888875211100 01111 0124578999999777466666667899999986421 00
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEE
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLC 346 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 346 (548)
............+++++++..|+.+ ...+.|.++++..................
T Consensus 72 -------------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ 126 (267)
T 1npe_A 72 -------------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG 126 (267)
T ss_dssp -------------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred -------------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence 0001111467899999976555555 45678999998743322222222245789
Q ss_pred EEEccCCCEEEEEeC---CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 347 CAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 347 l~~spdg~~l~sgs~---dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
++++|++..|+.+.. .+.|..++++...........-.....++++| ++. +++++....+.|.++
T Consensus 127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~-------~~~-----~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-------FSS-----QLCWVDAGTHRAECL 194 (267)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEE
T ss_pred EEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC-------CCC-----EEEEEECCCCEEEEE
Confidence 999997666555543 36888888864322212222334678999998 752 566677777899999
Q ss_pred ECCCC
Q 008939 424 DLEMD 428 (548)
Q Consensus 424 d~~~~ 428 (548)
|+...
T Consensus 195 ~~~g~ 199 (267)
T 1npe_A 195 NPAQP 199 (267)
T ss_dssp ETTEE
T ss_pred ecCCC
Confidence 98753
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-06 Score=80.19 Aligned_cols=240 Identities=11% Similarity=0.021 Sum_probs=142.1
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecC--------------------CCCceEEEecCCCCCCc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFS--------------------NSNPVCHAFDQDAKDGH 189 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~--------------------~~~~~~~~~~p~~~~~~ 189 (548)
..+..++++++|.++.+...+ .|+.||..++. +..+... ...+..++++++ ..
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---NN 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---TT
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCC---CC
Confidence 345578899999855565544 89999877532 3333211 135788999973 23
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeC-----------------
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHA----------------- 251 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~----------------- 251 (548)
.|+++...+.|..+|..... .+.+... . .+ ......+.+++.+ ++. +.++-..
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~---~~~~~~~--~--~~-~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGH---ATQLATS--V--DG-VPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEEEEETTTEEEEECTTCEE---CEEEESE--E--TT-EECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCC
T ss_pred cEEEEECCCCEEEEeCCCCE---EEEeccc--C--CC-CcccccceEEEecCCCE-EEEECCcccccccccceehcccCC
Confidence 57777666668888765310 0111100 0 00 0123578899999 887 5444322
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCC
Q 008939 252 DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSK 330 (548)
Q Consensus 252 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~ 330 (548)
++.|+.||..... +..+...-...+.++|+|+++.|+.+ ...+.|.+|++..
T Consensus 164 ~g~v~~~d~~~~~---------------------------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 164 TGRLIKYDPSTKE---------------------------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CEEEEEEETTTTE---------------------------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CceEEEEeCCCCE---------------------------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 3567777764310 11111111345679999999876666 4568999999874
Q ss_pred Ce--EEEeeeecCCceEEEEEccCCCEEEEEeC----------CCeEEEEECCCceeEEeccCC----CCCeEEEEEecC
Q 008939 331 EQ--LICGGKSYYGALLCCAWSMDGKYILTGGE----------DDLVQVWSMEDRKVVAWGEGH----NSWVSGVAFDSY 394 (548)
Q Consensus 331 ~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~h----~~~V~~v~~~p~ 394 (548)
.. ....+....+ ...+++.++|++.++... .+.|..+|.. ++.+..+... -..++.+++.
T Consensus 217 ~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-- 292 (322)
T 2fp8_A 217 PKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-- 292 (322)
T ss_dssp TTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--
T ss_pred CcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--
Confidence 21 1111111223 778999999987666544 4678888874 6666655433 2456677763
Q ss_pred CCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 395 WSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 395 ~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
++ +++++...++.|..+++...
T Consensus 293 ------~g------~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 293 ------DG------LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp ------TT------EEEEECSSCSEEEEEEC---
T ss_pred ------CC------EEEEeecCCCceEEEecccc
Confidence 66 56777667888999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-06 Score=80.45 Aligned_cols=206 Identities=15% Similarity=0.156 Sum_probs=133.5
Q ss_pred CeEEEecCC-CCceEEEecCCCCCCceEEEEEc---CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEec
Q 008939 165 PIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN---SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP 240 (548)
Q Consensus 165 ~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~---dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 240 (548)
.+..+...+ ..+..++|+++ + .|++++. ++.|.++|+.+ .++........ ......+++.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~d---g-~Lyvstg~~~~s~v~~iD~~t------g~v~~~i~l~~-----~~fgeGi~~~- 74 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEN---D-TLFESTGLYGRSSVRQVALQT------GKVENIHKMDD-----SYFGEGLTLL- 74 (266)
T ss_dssp EEEEEECCTTCCEEEEEECST---T-EEEEEECSTTTCEEEEEETTT------CCEEEEEECCT-----TCCEEEEEEE-
T ss_pred EEEEEECCCCCCcccEEEeCC---C-eEEEECCCCCCCEEEEEECCC------CCEEEEEecCC-----CcceEEEEEe-
Confidence 345555333 24688999986 4 4555543 57899999986 22332222111 1112245554
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECC
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRD 320 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d 320 (548)
+..+.++.-.++.+.++|..+. +.+..+..... ....+++|++.|+++..+
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~--------------------------~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs 125 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTL--------------------------SNIKNFTHQMK--DGWGLATDGKILYGSDGT 125 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTT--------------------------EEEEEEECCSS--SCCEEEECSSSEEEECSS
T ss_pred -CCEEEEEEecCCEEEEEECCCC--------------------------cEEEEEECCCC--CeEEEEECCCEEEEECCC
Confidence 4436666667899999998762 11222211101 123355677777777778
Q ss_pred CeEEEEeCCCCeEEEeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-------------
Q 008939 321 GYLRVFDYSKEQLICGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------- 382 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------- 382 (548)
+.|.++|.++.+.+..+.-.. ..++.+.|. +++..+....++.|.+.|.++++.+.++...
T Consensus 126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~ 204 (266)
T 2iwa_A 126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD 204 (266)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence 999999999988777665321 246788888 7766666656889999999999988877521
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
......|+|+| ++. ++++++.....|...++...
T Consensus 205 ~~v~nGIa~~~-------~~~-----~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQ-------ENK-----RIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEET-------TTT-----EEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcC-------CCC-----EEEEECCCCCeEEEEEEecc
Confidence 13568999999 773 67888888899999887654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.4e-06 Score=81.42 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=138.6
Q ss_pred EeC--CCCCEEEEecCC--eEEEEEccCCCC--CCeEEEe---c----CCCCceEEEecCCCCCCceEEEEEcC------
Q 008939 137 NFD--GKGTYIIFNVGD--AIFISDLNSQDK--DPIKSIH---F----SNSNPVCHAFDQDAKDGHDLLIGLNS------ 197 (548)
Q Consensus 137 ~~~--~~g~~l~~~~~d--~v~vwd~~~~~~--~~i~~~~---~----~~~~~~~~~~~p~~~~~~~l~~g~~d------ 197 (548)
.++ .+.++++..+.+ .|+|+|+.+... +.++.++ . ....+..+...|+ + .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd---G-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD---A-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS---C-EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC---e-EEEEcCCCcCCCCC
Confidence 446 888888886543 999999975422 2344442 1 1225666778887 6 55555555
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-------------------CCCcEEEE
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-------------------ADGNLYVY 258 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-------------------~dg~v~vw 258 (548)
|.|.++|.++ .+++.... ... .....-+++.|+|+++ .+++.. .+..|.+|
T Consensus 164 g~v~vlD~~T------~~v~~~~~--~~~-~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 164 GGILMLDHYS------FEPLGKWE--IDR-GDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CEEEEECTTT------CCEEEECC--SBC-TTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CeEEEEECCC------CeEEEEEc--cCC-CCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 6799999875 22222111 111 1123345788999999 777774 46899999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec-C-CCeEEEEE--CCCCCEEEEEE------CCCeEEEEeC
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC-Q-GSINSIAF--STDGTYLATVG------RDGYLRVFDY 328 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~-~~v~~~~~--sp~g~~l~s~~------~dg~v~vwd~ 328 (548)
|+.+. +. +..+... . .....+.| +|++++++++. .+++|.+|..
T Consensus 234 D~~~~-k~-------------------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 234 DLRKR-KR-------------------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp ETTTT-EE-------------------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ECCCC-cE-------------------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 99862 11 1122211 0 12334545 99999888776 4568888776
Q ss_pred CCCeEE--Ee--eeec----------------CCceEEEEEccCCCEEEEEeC-CCeEEEEECCC---ceeEEeccCCC-
Q 008939 329 SKEQLI--CG--GKSY----------------YGALLCCAWSMDGKYILTGGE-DDLVQVWSMED---RKVVAWGEGHN- 383 (548)
Q Consensus 329 ~~~~~~--~~--~~~~----------------~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~---~~~~~~~~~h~- 383 (548)
..++.. .. +... ......|.++|||++|.++.. .+.|.+||+.+ .+.+..+.-..
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence 554321 11 1110 234678999999999888765 68999999863 34444443110
Q ss_pred -------------CCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 384 -------------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 384 -------------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
..-..++++| || ++|..+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSp-------DG------k~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISR-------DG------RRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECT-------TS------SEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcC-------CC------CEEEEEc
Confidence 1347899999 99 5666665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-07 Score=89.59 Aligned_cols=253 Identities=8% Similarity=-0.081 Sum_probs=151.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCCcEEEEEeeecccccccceeeeee
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
.|.++|..+. +.+..+.... .+ .++|+|+ +..|+++. .++.|.+||+.+ .++.....
T Consensus 47 ~vsvID~~t~--~v~~~i~vG~-~P-~i~~spD---g~~lyVan~~~~r~~~G~~~~~VsviD~~T------~~vv~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGCG--VTLGHSLGAF-LS-LAVAGHS---GSDFALASTSFARSAKGKRTDYVEVFDPVT------FLPIADIE 113 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECT-TC-EEEECTT---SSCEEEEEEEETTTTSSSEEEEEEEECTTT------CCEEEEEE
T ss_pred eEEEEECCCC--eEEEEEeCCC-CC-ceEECCC---CCEEEEEcccccccccCCCCCEEEEEECCC------CCEEEEEE
Confidence 7889999884 4888887554 45 8999999 77788886 367899999987 22222222
Q ss_pred eccCCc-ccCcceEEEEEecCCCcEEEEEeC--CCcEEE--EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 222 YNKDGS-VNNSRCTSVTWVPGGDGAFVVGHA--DGNLYV--YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 222 ~~~~~~-~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
...... ........+.++|+++ +|+++.. +..|.+ +|+.+ . ..+.
T Consensus 114 v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t----v-------------------------~~i~ 163 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD----D-------------------------QLTK 163 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE----E-------------------------EEEE
T ss_pred CCCccccccCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh----c-------------------------eEEE
Confidence 110000 0013456899999999 6666654 456888 87754 0 0000
Q ss_pred ecCCCeEEEEECCCC-CEEEEEECCCeEEEEeCCC-----CeEEE----eeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 297 ICQGSINSIAFSTDG-TYLATVGRDGYLRVFDYSK-----EQLIC----GGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g-~~l~s~~~dg~v~vwd~~~-----~~~~~----~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
. ..+ +.+.|++ ..+++.+.|+.+.+.|+.+ ++.+. .+.....+. . .+++..++..+. +.|.
T Consensus 164 v--~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~ 234 (368)
T 1mda_H 164 S--ASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSIL 234 (368)
T ss_dssp C--SSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCE
T ss_pred C--CCc--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEE
Confidence 0 000 1123433 3344555677777778876 43321 111122333 3 566666666666 9999
Q ss_pred EEECCCce--eEEeccCC----------CCCeEEEEEecCCCCCCCCCCccceeEEEEEEe---C-----CCeEEEEECC
Q 008939 367 VWSMEDRK--VVAWGEGH----------NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG---Q-----DTRLLLWDLE 426 (548)
Q Consensus 367 vwd~~~~~--~~~~~~~h----------~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~---~-----Dg~i~lwd~~ 426 (548)
+.|+.... .+..+.-. ......++|+| ||. +++++.. . +..+.++|+.
T Consensus 235 viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-------dg~-----~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-------NTD-----GIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-------TTT-----EEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-------CCC-----EEEEEeccccCcccccCCCEEEEECC
Confidence 99997542 33332210 01112268999 872 3444433 2 2356699999
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEE-
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVC- 502 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s- 502 (548)
+.+.+..+.. ......|+|+||+ +++..
T Consensus 303 t~~vv~~i~v------------------------------------------------g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 303 VGQTSGPISN------------------------------------------------GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp SCCEEECCEE------------------------------------------------EEEECEEEECCSSSCEEEEEET
T ss_pred CCeEEEEEEC------------------------------------------------CCCcceEEECCCCCEEEEEccC
Confidence 9887765543 1147889999973 56666
Q ss_pred CCCeEEEEeCCCCC
Q 008939 503 REGHIKIWMRPGVA 516 (548)
Q Consensus 503 ~Dg~I~iW~~~~~~ 516 (548)
.++.|.++|+.+.+
T Consensus 335 ~~~~VsVID~~t~k 348 (368)
T 1mda_H 335 GTEVLDIYDAASDQ 348 (368)
T ss_dssp TTTEEEEEESSSCE
T ss_pred CCCeEEEEECCCCc
Confidence 59999999998766
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-05 Score=83.02 Aligned_cols=339 Identities=11% Similarity=0.055 Sum_probs=189.6
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-----ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEe
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-----HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSL 205 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-----~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl 205 (548)
..|.++..+.+|.+.+.... .|.+||..+.....+... ......+.++..+++ + .|.+|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g-~lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD---N-KLWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT---S-EEEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC---C-CEEEEeCCCCeEEECC
Confidence 46788888888887766544 899999775432121111 123456788887765 2 5788888677888987
Q ss_pred eecccccccc-eeeee-eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 206 RQQLQDVGKK-LVGAH-HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 206 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
.......... ..... ............|.+|...+++. |..|..++-|..|+..... ...+......
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~------- 354 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPT--FHTWSYSPTQ------- 354 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCS--CEEEC----C-------
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCc--ceeeccCccc-------
Confidence 6521100000 00000 00111223567899999988886 7788877888888876421 0001000000
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee---eecCCceEEEEEccCCCEEEEEe
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~sgs 360 (548)
... -......|.++...+++. |..|+.++-|.+||..+++..... ......|.++...+++. |..|+
T Consensus 355 ------~~~--~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt 424 (781)
T 3v9f_A 355 ------MNE--SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGT 424 (781)
T ss_dssp ------CCS--SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEE
T ss_pred ------ccc--CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEe
Confidence 000 000125689999888876 445665666899998765433211 11235688998888886 45577
Q ss_pred CCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 361 EDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.++-|..+|.++++...... .....|.++..++ +| .|..++. +-|..||..+++.........
T Consensus 425 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g-------~lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 425 YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-------NK-------KIWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-------TS-------EEEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-------CC-------CEEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 77789999988776543321 2456799999887 77 3444555 568899988765433221110
Q ss_pred ----CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEee----cCCCCeeEEEEeCCe-EEEEECCCeEEE
Q 008939 439 ----LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHR----VHTEPLSGLIFTQES-VLTVCREGHIKI 509 (548)
Q Consensus 439 ----~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~----~h~~~V~~l~fspd~-l~t~s~Dg~I~i 509 (548)
......+..+. +..+-+++....+..++....+ +..+. .....|.+|...+++ |..++.+|.|..
T Consensus 490 ~~~~~~~i~~i~~d~-----~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~ 563 (781)
T 3v9f_A 490 SQLLENFVRSIAQDS-----EGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCF 563 (781)
T ss_dssp SSCSCSCEEEEEECT-----TCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEE
T ss_pred cccccceeEEEEEcC-----CCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEE
Confidence 00001111111 2223334443344455543322 22221 123568888888764 777777777688
Q ss_pred EeCCCCC
Q 008939 510 WMRPGVA 516 (548)
Q Consensus 510 W~~~~~~ 516 (548)
||..+..
T Consensus 564 ~d~~~~~ 570 (781)
T 3v9f_A 564 PSARNFD 570 (781)
T ss_dssp SCTTTCC
T ss_pred ECCCCCc
Confidence 8876654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-07 Score=93.86 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=145.3
Q ss_pred CCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecC-CCCceEEEe-c-CCCCCCceEEEEE------------------
Q 008939 139 DGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFS-NSNPVCHAF-D-QDAKDGHDLLIGL------------------ 195 (548)
Q Consensus 139 ~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~-~~~~~~~~~-~-p~~~~~~~l~~g~------------------ 195 (548)
.+||+++..+..+ .|.+.|+++.+ .+..+... ...+..+++ . |+ +.+++++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p~---~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPR---SNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSB---CSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecCC---CcEEEEecccccccCCCCcccccccc
Confidence 4588988887654 79999999843 55544432 346888887 4 77 77888884
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC---------------cEEEEEc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG---------------NLYVYEK 260 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg---------------~v~vwd~ 260 (548)
.++.|.++|.++ .++..... -......++++|++. ++++.+.+. .|.++|.
T Consensus 173 ~~~~vtvID~~t------~~v~~qI~-------Vgg~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~ 238 (595)
T 1fwx_A 173 YVNVFTAVDADK------WEVAWQVL-------VSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 238 (595)
T ss_dssp EEEEEEEEETTT------TEEEEEEE-------ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred cCceEEEEECCC------CeEEEEEE-------eCCCccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeec
Confidence 234678888765 23332222 112446678999998 666655442 2333333
Q ss_pred CCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC--CeE-EEee
Q 008939 261 SKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK--EQL-ICGG 337 (548)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~--~~~-~~~~ 337 (548)
... ..+.++|+++.. +.|.|.|.++ ++. +..+
T Consensus 239 ~~~-----------------------------------------~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~I 273 (595)
T 1fwx_A 239 AEI-----------------------------------------EKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYI 273 (595)
T ss_dssp HHH-----------------------------------------HHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEE
T ss_pred cce-----------------------------------------eEeccCCCeeEE----CcEEEEeCcccCCceeEEEE
Confidence 210 012344544332 4599999998 544 4455
Q ss_pred eecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCce------------eEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 338 KSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRK------------VVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 338 ~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~------------~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
..- ....++.++|||+++++++ .+..|.++|+++.+ .+..+. -......++|+| ||
T Consensus 274 pvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-------dG-- 342 (595)
T 1fwx_A 274 PIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-------RG-- 342 (595)
T ss_dssp EEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-------TS--
T ss_pred ecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-------CC--
Confidence 432 3467899999999877765 57899999999653 344443 345678899999 98
Q ss_pred cceeEEEEEEeCCCeEEEEECCC----------CeEEeeeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEM----------DEIVVPLRRG 437 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~----------~~~~~~~~~~ 437 (548)
+..++.-.|++|..||+.. .+.+..+..+
T Consensus 343 ----~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 343 ----NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp ----EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred ----eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 7788888999999999987 5667776654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.68 E-value=0.0001 Score=81.02 Aligned_cols=327 Identities=14% Similarity=0.095 Sum_probs=185.4
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEE-------E-----ecCCCCceEEEecCCCCCCceEEEEEcC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKS-------I-----HFSNSNPVCHAFDQDAKDGHDLLIGLNS 197 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~-------~-----~~~~~~~~~~~~~p~~~~~~~l~~g~~d 197 (548)
...|.++..+.+|.+.+....+.|.++|..+.....+.. . ......+.++..+++ + .|.+|+.+
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~---g-~lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF---N-NIWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS---C-CEEEEEBS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC---C-CEEEEecC
Confidence 456788888888877665554688899987644222221 0 123456788888775 3 48889988
Q ss_pred CcEEEEEeeecccccccceeeeeee---ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHY---NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+-|..++.... ........ ..........|.++...+++. |..|..++-|..||..+... ..+.
T Consensus 333 ~Gl~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~--- 399 (781)
T 3v9f_A 333 GGINFISNAPP------TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVA--IYNK--- 399 (781)
T ss_dssp SCEEEECSSCC------SCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEE--ECC----
T ss_pred CeEEEeCCCCC------cceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeE--EEcc---
Confidence 88999986641 11110000 001122456799999888776 77777777799998764110 0000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMD 352 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spd 352 (548)
.. -......|.++...+++.+.+ |+.++-|..+|..+++...... .....|.++...++
T Consensus 400 ~~------------------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 460 (781)
T 3v9f_A 400 EN------------------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN 460 (781)
T ss_dssp ----------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT
T ss_pred CC------------------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC
Confidence 00 011236789999888876544 6666779999988776543221 12457899988888
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCC-----CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGH-----NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+. |..|+. +-|.+||..+++........ ...|.++..++ +| .|..++.++-|..||..+
T Consensus 461 g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-------~g-------~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 461 KK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-------EG-------RFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp SE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-------TC-------CEEEEESSSCEEEECTTC
T ss_pred CC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-------CC-------CEEEEEcCCCEEEEeCCC
Confidence 86 455555 56889998876543322212 46789999887 77 355555544588899877
Q ss_pred CeEEeeeecCCC--CC-CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec----CCCCeeEEEEeCCe-EE
Q 008939 428 DEIVVPLRRGPL--GG-SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV----HTEPLSGLIFTQES-VL 499 (548)
Q Consensus 428 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~----h~~~V~~l~fspd~-l~ 499 (548)
++... +..... .. ...+..+. +..+-+++..+.+..+|....+ ...+.. ....|.++...+++ |.
T Consensus 525 ~~~~~-~~~~~~l~~~~i~~i~~d~-----~g~lWi~T~~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 525 QLVRK-FNQYEGFCSNTINQIYRSS-----KGQMWLATGEGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp CEEEE-ECTTTTCSCSCEEEEEECT-----TSCEEEEETTEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred CeEEE-ccCCCCCCCCeeEEEEECC-----CCCEEEEECCCceEEECCCCCc-EEEccccCCCCCceEEEEEECCCCCEE
Confidence 65433 221110 00 01111111 1222233332211444443332 222211 13457888888765 76
Q ss_pred EEECCCeEEEEeCCCCC
Q 008939 500 TVCREGHIKIWMRPGVA 516 (548)
Q Consensus 500 t~s~Dg~I~iW~~~~~~ 516 (548)
.++..| |..++..+..
T Consensus 598 ~~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 598 ASTNTG-ISCYITSKKC 613 (781)
T ss_dssp EECSSC-EEEEETTTTE
T ss_pred EEcCCc-eEEEECCCCc
Confidence 677666 5556766544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-05 Score=82.71 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=151.8
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccC--CcccCcceEEEEEecCCCcEEEEEeC------CCcEEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKD--GSVNNSRCTSVTWVPGGDGAFVVGHA------DGNLYVYE 259 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~p~~~~~l~s~~~------dg~v~vwd 259 (548)
+..|++++.++.|+.+|.++ ++.+......... ......++ . -++ .++++.. +|.|+.||
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-----G~~~W~~~~~~~~~~~~~~~~P~----v-~~~--~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-----GKAIWSQQTTDPAKPYSITGAPR----V-VKG--KVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-----CCEEEEEECSCTTSSCBCCSCCE----E-ETT--EEEECCBCTTTCCBCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-----CCEeeeeccCCCCCcceecCCCE----E-ECC--EEEEeCCCCCcCCCCEEEEEE
Confidence 45788899999999999876 3444332110000 00111111 1 133 4555543 58999999
Q ss_pred cCCCCCCCCCcccccc-cc-eee-----eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-----------
Q 008939 260 KSKDGAGDSSFPVIKD-QT-QFS-----VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG----------- 321 (548)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~-~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg----------- 321 (548)
..+ ++....+..... .. .+. ....... ...+.....+......++++|+..+++.+..++
T Consensus 185 ~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 185 ADT-GKLAWRFYTVPGDPALPYEHPELREAAKTWQ-GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp TTT-CCEEEEEESSCCCTTSCCSSHHHHHHHTTCC-SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred CCC-CcEEEEecccCCCCCccccccccccccccCC-ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 987 444443322110 00 000 0000000 000000001122334578888888888887766
Q ss_pred --------eEEEEeCCCCeEEEeeee--cC-------CceEEEEEccCCC---EEEEEeCCCeEEEEECCCceeEEeccC
Q 008939 322 --------YLRVFDYSKEQLICGGKS--YY-------GALLCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 322 --------~v~vwd~~~~~~~~~~~~--~~-------~~v~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~ 381 (548)
.|..+|.++++.+..++. |. .+.....+..+|+ .++.++.+|.++++|.++++.+.....
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 399999999999887764 21 2233333444775 688999999999999999988744321
Q ss_pred CC-CCeE-----------------------------------EEEEecCCCCCCCCCCccceeEEEE-------------
Q 008939 382 HN-SWVS-----------------------------------GVAFDSYWSQPNSDGTAETVMYRFG------------- 412 (548)
Q Consensus 382 h~-~~V~-----------------------------------~v~~~p~~~~~~~dg~~~~~~~~l~------------- 412 (548)
.. .+.. .++|+| +.. .+++
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-------~~g-----~~yv~~~~~~~~~~~~~ 410 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-------GTG-----LVYIPYQEVPGVYRNEG 410 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-------TTT-----EEEEEEEECCEEECCCG
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-------CCC-----EEEEeccccceEeeeec
Confidence 11 0111 144554 320 1111
Q ss_pred ----------------------EEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCcee
Q 008939 413 ----------------------SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMR 470 (548)
Q Consensus 413 ----------------------s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~ 470 (548)
....++.|..||+.+++.+.......+.....+. ..+..+..++.++.++.+
T Consensus 411 ~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 411 KDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS------TAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp GGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE------ETTTEEEEECTTSEEEEE
T ss_pred cccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeE------eCCCEEEEECCcccchhh
Confidence 1113488999999999999887764333222222 224566778888999999
Q ss_pred ecCCCCceEEeecCC
Q 008939 471 DVPKLSPLVAHRVHT 485 (548)
Q Consensus 471 d~~~~~~~~~~~~h~ 485 (548)
|..+.+.+..++...
T Consensus 485 d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 485 SADKGEALWQFEAQS 499 (668)
T ss_dssp ETTTCCEEEEEECSS
T ss_pred hhhcChhheEecCCC
Confidence 999999998887653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-05 Score=74.34 Aligned_cols=205 Identities=8% Similarity=-0.048 Sum_probs=133.2
Q ss_pred ceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC-CCeEEEEEC
Q 008939 232 RCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-GSINSIAFS 308 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s 308 (548)
....+.|+|++. ++++.+. ++.|+++|+.+.. . +..+.... .....+++.
T Consensus 22 f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~-v-------------------------~~~i~l~~~~fgeGi~~~ 74 (266)
T 2iwa_A 22 FTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGK-V-------------------------ENIHKMDDSYFGEGLTLL 74 (266)
T ss_dssp CEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCC-E-------------------------EEEEECCTTCCEEEEEEE
T ss_pred CcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCC-E-------------------------EEEEecCCCcceEEEEEe
Confidence 357999999864 4444432 5799999998732 1 11111111 122345554
Q ss_pred CCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--C--
Q 008939 309 TDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--N-- 383 (548)
Q Consensus 309 p~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~-- 383 (548)
++.|+.. -.++.+.++|..+.+.+..+..... ....+++||+.|+++..++.|.++|.++.+.+..+.-- .
T Consensus 75 --g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 75 --NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp --TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 4455444 4678999999999999888753211 12446678887777777899999999998877776521 1
Q ss_pred -CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecc
Q 008939 384 -SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGT 462 (548)
Q Consensus 384 -~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~ 462 (548)
..++.+.|. +| ..++....++.|.+.|..+++.+..+... +.
T Consensus 151 ~~~~nele~~--------dg------~lyvn~~~~~~V~vID~~tg~V~~~I~~~-----------------------g~ 193 (266)
T 2iwa_A 151 VIRLNELEYI--------NG------EVWANIWQTDCIARISAKDGTLLGWILLP-----------------------NL 193 (266)
T ss_dssp CCCEEEEEEE--------TT------EEEEEETTSSEEEEEETTTCCEEEEEECH-----------------------HH
T ss_pred cccceeEEEE--------CC------EEEEecCCCCeEEEEECCCCcEEEEEECC-----------------------Cc
Confidence 246678876 66 56677767899999999999988877541 00
Q ss_pred cCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCC
Q 008939 463 LQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 463 ~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~ 515 (548)
.. + .+..-..-....+.|+|+|+. ++|+.....|..-++...
T Consensus 194 ~~------~-----~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 194 RK------K-----LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HH------H-----HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cc------c-----cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 00 0 000000012457899999973 778888899999987553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-05 Score=73.73 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=108.7
Q ss_pred eEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN 254 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~ 254 (548)
..+.|+ + +.++.+.+.+| .|+.+|+++ .++...... ..........++++.+.+....++.
T Consensus 46 qGL~~~-~---~~LyestG~~g~S~v~~vD~~T------gkv~~~~~l-------~~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 46 EGFFYR-N---GYFYESTGLNGRSSIRKVDIES------GKTLQQIEL-------GKRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-T---TEEEEEEEETTEEEEEEECTTT------CCEEEEEEC-------CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred ceEEEE-C---CEEEEECCCCCCceEEEEECCC------CcEEEEEec-------CCccceeEEEEeCCEEEEEEeeCCE
Confidence 667776 4 55566666666 799999886 223332221 2233333233345546666667899
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
+.+||..+. +.+..+.... ....+++|++.|+....++.|.++|..+.+.+
T Consensus 109 v~v~D~~t~--------------------------~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 109 GFVWNIRNL--------------------------RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV 159 (262)
T ss_dssp EEEEETTTC--------------------------CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred EEEEECccC--------------------------cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence 999999862 2222332211 22233356777777666788999999998887
Q ss_pred EeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC------------CCCeEEEEEec
Q 008939 335 CGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------NSWVSGVAFDS 393 (548)
Q Consensus 335 ~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------~~~V~~v~~~p 393 (548)
..+.... ..++.+.|. +|++.+..-.++.|.+.|.++++.+.++... ....+.|+|+|
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 7755321 345667886 7876666657889999999999988776531 23558999999
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00038 Score=68.44 Aligned_cols=245 Identities=5% Similarity=-0.098 Sum_probs=149.3
Q ss_pred ceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 133 MTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
..+.+..+ ..+++++....|+..++... .+..+.-....+..++|++.. +.++++-...+.|+.+++....
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~---~~~~~~~~~~~~~~l~~d~~~--~~ly~~D~~~~~I~r~~~~g~~--- 106 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRS---EYTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGSN--- 106 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSC---CEEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCS---
T ss_pred Cccccccc-CceeEeecccceEEEeCCCC---eeEEeecCCCceEEEEEeccc--cEEEEEeccCCceEEEecCCCC---
Confidence 34555555 45666666667888888753 333333345578999999862 3344444566789888876521
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCe
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (548)
.+.+.. . .......+++.+.+.+++++-...+.|.+.+++... ..
T Consensus 107 ~~~~~~------~---~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~------------------------ 151 (349)
T 3v64_C 107 VEEVVS------T---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RK------------------------ 151 (349)
T ss_dssp CEEEEC------S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CE------------------------
T ss_pred ceEEEe------C---CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eE------------------------
Confidence 011110 0 123457899998766466666667889999876311 00
Q ss_pred eEeeecCCCeEEEEECCCCCEEEEEE-CC-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEE
Q 008939 293 ARWHICQGSINSIAFSTDGTYLATVG-RD-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWS 369 (548)
Q Consensus 293 ~~~~~h~~~v~~~~~sp~g~~l~s~~-~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd 369 (548)
..+...-.....++++|.+..|+... .. +.|..+++..................|+++|++..|..+ ...+.|..+|
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence 00111124578899999655555544 34 778888886433222222233457899999876665554 4567899999
Q ss_pred CCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 370 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 370 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++.......+........+|++. ++ .++++-...+.|..+|..+++.+..+.
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~--------~~------~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVF--------ED------SLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEEeCCCCCceEEEEE--------CC------EEEEecCCCCeEEEEEccCCCccEEec
Confidence 87543333333334456778774 44 577777778889988876776665554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00067 Score=65.69 Aligned_cols=239 Identities=8% Similarity=-0.088 Sum_probs=144.5
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+|+++..+.|+..|+.... ....+ .....+..++|++.. +..+++-...+.|+.+++.... .+.......
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~--~~~~~-~~~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~--~~~~~~~~~-- 72 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAH--GVSSYDTVI-- 72 (316)
T ss_dssp CEEEEECBSSEEEEETTSCC--CEEEE-CSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC----------CEEEE--
T ss_pred CEEEEECCCeEEEEECCCcc--eEehh-cCCCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCC--CCcccEEEE--
Confidence 35777777889999998744 33333 245678999999872 3344444556889999876410 000100000
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.. .......|++.+.+.+++++-...+.|.+++++.. .. ...........
T Consensus 73 -~~---~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~--~~------------------------~~~~~~~~~~P 122 (316)
T 1ijq_A 73 -SR---DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KR------------------------KTLFRENGSKP 122 (316)
T ss_dssp -CS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SE------------------------EEEEECTTCCE
T ss_pred -eC---CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC--ce------------------------EEEEECCCCCc
Confidence 00 12345789998766645566567789999987631 00 00111112467
Q ss_pred EEEEECCCCCEEEEEECC--CeEEEEeCCCCeEEEee-eecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCceeEEe
Q 008939 303 NSIAFSTDGTYLATVGRD--GYLRVFDYSKEQLICGG-KSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d--g~v~vwd~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~~~~ 378 (548)
..++++|.+..|+.+... +.|..+++. +.....+ .........++++|++..|+.+. ..+.|..+|++.......
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 899999966666655543 688888886 3332222 22345678999999876665554 567999999975322222
Q ss_pred cc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+. ..-.....|++. ++ +++++-...+.|..+|..+++.+..+.
T Consensus 202 ~~~~~~~~~P~giav~--------~~------~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EECTTTTSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred eecCCccCCcEEEEEE--------CC------EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 22 223445678875 44 577777778899999987777665554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00017 Score=69.98 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=123.2
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeecc-------CC------cccCcceEEEEEec
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNK-------DG------SVNNSRCTSVTWVP 240 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~v~~l~~~p 240 (548)
..+.+++|+++ +.+++++..++.|+.||.... .+........ ++ ......+..|++.+
T Consensus 19 ~~p~~i~~d~~---g~~l~v~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 19 YAPNSFTFDST---NKGFYTSVQDGRVIKYEGPNS------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp SCCCCEECCTT---CSSEEEECTTSEEEEECCTTT------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CCceEEEEcCC---CCEEEEEcCCCeEEEECCCCC------ceEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 46788889887 777899999999999987541 1111000000 00 00123578999998
Q ss_pred -CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEE
Q 008939 241 -GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG 318 (548)
Q Consensus 241 -~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~ 318 (548)
++. |+++...+.|..+|.... .. ..+...... ......+.+++.+ +|++.++-.
T Consensus 90 ~~g~--l~v~d~~~~i~~~d~~~g-~~-~~~~~~~~~--------------------~~~~~p~~i~~d~~~G~l~v~d~ 145 (322)
T 2fp8_A 90 QNNQ--LYIVDCYYHLSVVGSEGG-HA-TQLATSVDG--------------------VPFKWLYAVTVDQRTGIVYFTDV 145 (322)
T ss_dssp TTTE--EEEEETTTEEEEECTTCE-EC-EEEESEETT--------------------EECSCEEEEEECTTTCCEEEEES
T ss_pred CCCc--EEEEECCCCEEEEeCCCC-EE-EEecccCCC--------------------CcccccceEEEecCCCEEEEECC
Confidence 554 566655555888876531 10 000000000 0013467899999 998666543
Q ss_pred C-----------------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCc-----ee
Q 008939 319 R-----------------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDR-----KV 375 (548)
Q Consensus 319 ~-----------------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~-----~~ 375 (548)
. ++.|..||..+++....... ......++|+|++++|+++ ..++.|.+|++... +.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~ 224 (322)
T 2fp8_A 146 STLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224 (322)
T ss_dssp CSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred cccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence 2 36788999887765433222 2345679999999866655 55689999998752 12
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC----------CCeEEEEECCCCeEEeee
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ----------DTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~----------Dg~i~lwd~~~~~~~~~~ 434 (548)
+..+ .. ...+++++ +| +++++... .+.|..+|.. ++.+..+
T Consensus 225 ~~~~---~g-P~gi~~d~-------~G------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 225 LVKI---PN-PGNIKRNA-------DG------HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp EEEC---SS-EEEEEECT-------TS------CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred EEeC---CC-CCCeEECC-------CC------CEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 2222 23 67889988 88 45555433 4567777753 5544443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00017 Score=76.07 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=100.8
Q ss_pred EEEECCCCCEEEEEECC----------------CeEEEEeCCCCeEEEeeeecC----------CceEEEEEccCCC---
Q 008939 304 SIAFSTDGTYLATVGRD----------------GYLRVFDYSKEQLICGGKSYY----------GALLCCAWSMDGK--- 354 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~d----------------g~v~vwd~~~~~~~~~~~~~~----------~~v~~l~~spdg~--- 354 (548)
.+++.++...++.+..+ +.|..+|.++++.+..++... .++. +....+|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35566665566665532 369999999999987765321 1221 23335774
Q ss_pred EEEEEeCCCeEEEEECCCceeEEeccCCC--C-----------Ce--------------------------EEEEEecCC
Q 008939 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHN--S-----------WV--------------------------SGVAFDSYW 395 (548)
Q Consensus 355 ~l~sgs~dg~I~vwd~~~~~~~~~~~~h~--~-----------~V--------------------------~~v~~~p~~ 395 (548)
.++.++.+|.+.++|.++++.+..+.... . ++ ..++|+|
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-- 395 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-- 395 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET--
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC--
Confidence 57788899999999999998876553211 1 11 1234555
Q ss_pred CCCCCCCCccceeEEEEEEe-------------------------------------CCCeEEEEECCCCeEEeeeecCC
Q 008939 396 SQPNSDGTAETVMYRFGSVG-------------------------------------QDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~-------------------------------------~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
+. .+|.... .++.|..||+.+++.+..+....
T Consensus 396 -----~~------g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~ 464 (571)
T 2ad6_A 396 -----ES------RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF 464 (571)
T ss_dssp -----TT------TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS
T ss_pred -----CC------CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC
Confidence 33 1222221 35789999999999888876543
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
......+ ...+..+.++..+..+..+|..+++.+..+...
T Consensus 465 ~~~~~~~------~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 465 AAWGGTL------YTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCCSBCE------EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CccceeE------EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 2222111 112345666777888888888888888777644
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00038 Score=69.54 Aligned_cols=244 Identities=5% Similarity=-0.099 Sum_probs=148.3
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
+.+..+ ..+++++....|+..++.... +..+.-....+..++|++.. +.++++-...+.|+.+++...
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~---~~~~~~~~~~~~gl~~d~~~--~~ly~~D~~~~~I~r~~~~g~------ 148 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSE---YTLLLNNLENAIALDFHHRR--ELVFWSDVTLDRILRANLNGS------ 148 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCC---CEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSC------
T ss_pred ECCccc-cceeEeecCccceeeccCCCc---EEEEecCCCccEEEEEecCC--CeEEEEeCCCCcEEEEecCCC------
Confidence 344444 456666666788888987633 33333345678999999862 344445456678988887651
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeE
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIAR 294 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (548)
....... . .......|++.+.+.+++++-...+.|.+.+++. ... ...
T Consensus 149 ~~~~~~~---~---~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~------------------------~~l 196 (386)
T 3v65_B 149 NVEEVVS---T---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHR------------------------KVL 196 (386)
T ss_dssp CEEEEEC---S---SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSC------------------------EEE
T ss_pred CcEEEEe---C---CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--Cce------------------------EEe
Confidence 1111000 0 1234567888887664556656667787777653 110 011
Q ss_pred eeecCCCeEEEEECCCCCEEEEEEC-C-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECC
Q 008939 295 WHICQGSINSIAFSTDGTYLATVGR-D-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSME 371 (548)
Q Consensus 295 ~~~h~~~v~~~~~sp~g~~l~s~~~-d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~ 371 (548)
+...-.....++++|.+..|+.... . +.|..+++..................|+|+|++..|+.+ ...+.|..+|++
T Consensus 197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 1111245788999996666665543 3 678888886433322222334457899999876655554 456789999987
Q ss_pred CceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 372 DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 372 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.......+........+|++. ++ .++++-...+.|..+|..+++.+..+..
T Consensus 277 G~~~~~~~~~~~~~P~giav~--------~~------~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 277 GSHRKAVISQGLPHPFAITVF--------ED------SLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCSCEEEECSSCSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCeeEEEEECCCCCceEEEEE--------CC------EEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 543333333334456778874 44 5777777788999999777776666553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.8e-05 Score=69.86 Aligned_cols=158 Identities=9% Similarity=0.057 Sum_probs=107.8
Q ss_pred cceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeE--EEE
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSIN--SIA 306 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~ 306 (548)
.....|.|+ ++. ++.+.+.+| .|+++|+.+.. . +..+... .... .++
T Consensus 43 ~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgk-v-------------------------~~~~~l~-~~~FgeGit 93 (262)
T 3nol_A 43 AFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGK-T-------------------------LQQIELG-KRYFGEGIS 93 (262)
T ss_dssp CEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCC-E-------------------------EEEEECC-TTCCEEEEE
T ss_pred cccceEEEE-CCE-EEEECCCCCCceEEEEECCCCc-E-------------------------EEEEecC-CccceeEEE
Confidence 344788898 554 677776666 89999998732 1 1111111 2222 344
Q ss_pred ECCCCCEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC--C
Q 008939 307 FSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--N 383 (548)
Q Consensus 307 ~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--~ 383 (548)
+ ++..|.... .++.+.+||..+.+.+.++.... ....+++|++.|+....++.|.++|.++.+.+..+.-. .
T Consensus 94 ~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 94 D--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp E--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred E--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 4 344554444 58899999999999998877432 22334467887777766889999999998887776531 2
Q ss_pred ---CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 ---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ---~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| ++++..-.+..|.+.|.++++.+..+..
T Consensus 169 ~~~~~lNELe~~--------~G------~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 169 EELPELNELEWV--------DG------EIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EECCCEEEEEEE--------TT------EEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ccccccceeEEE--------CC------EEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 345567775 77 6667666789999999999999888765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0008 Score=70.97 Aligned_cols=162 Identities=15% Similarity=0.023 Sum_probs=101.6
Q ss_pred EEEECCCCCEEEEEEC--------------------C----CeEEEEeCCCCeEEEeeee--cC--------CceEEEEE
Q 008939 304 SIAFSTDGTYLATVGR--------------------D----GYLRVFDYSKEQLICGGKS--YY--------GALLCCAW 349 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~--------------------d----g~v~vwd~~~~~~~~~~~~--~~--------~~v~~l~~ 349 (548)
.++++|+..+++.+.. | +.|..+|.++++.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4667777777776663 2 5899999999999887653 21 1221 122
Q ss_pred c-cCCC---EEEEEeCCCeEEEEECCCceeEEeccCCC--CCeEE-----------------------------------
Q 008939 350 S-MDGK---YILTGGEDDLVQVWSMEDRKVVAWGEGHN--SWVSG----------------------------------- 388 (548)
Q Consensus 350 s-pdg~---~l~sgs~dg~I~vwd~~~~~~~~~~~~h~--~~V~~----------------------------------- 388 (548)
. .+|+ .++.++.+|.++++|.++++.+..+.... .+...
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4674 78889999999999999998876554321 11222
Q ss_pred --------EEEecCCCCCCCCCCccceeEEEEEEe---------------------------------CCCeEEEEECCC
Q 008939 389 --------VAFDSYWSQPNSDGTAETVMYRFGSVG---------------------------------QDTRLLLWDLEM 427 (548)
Q Consensus 389 --------v~~~p~~~~~~~dg~~~~~~~~l~s~~---------------------------------~Dg~i~lwd~~~ 427 (548)
++|+| +. .++.... .++.|..||+.+
T Consensus 409 ~Gg~~w~~~a~dp-------~~------g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~t 475 (582)
T 1flg_A 409 LGGKNWNPMAYSQ-------DT------GLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVS 475 (582)
T ss_dssp TCSSCSSCCEECT-------TT------CCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTT
T ss_pred ccccCCCCceECC-------CC------CEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCC
Confidence 22222 11 1121111 368899999999
Q ss_pred CeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 428 DEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
++.+.......+... +.....+..+..++.+..++.+|..+++.+..++...
T Consensus 476 G~~~W~~~~~~~~~~------g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 476 GKVVWEHKEHLPLWA------GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCEEEEEEESSCCCS------CCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEecCCCCCcc------cceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 998877765332211 1111224556667778888888888888887776543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00039 Score=67.39 Aligned_cols=240 Identities=6% Similarity=-0.036 Sum_probs=145.5
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
.+|+++....|+..+++.........+. ....+..++|++.. +.++++-...+.|+.+++.... ....+.. .
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~--~~lyw~D~~~~~I~r~~~~g~~--~~~~~~~-~-- 76 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSH--GLIYWSDVSEEAIKRTEFNKTE--SVQNVVV-S-- 76 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGG--TEEEEEETTTTEEEEEETTSSS--CCCEEEE-E--
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCC--CEEEEEECCCCcEEEEEccCCC--ceEEEEc-C--
Confidence 3566766679999999875312222222 22367788999862 3444555566788888876520 0011111 0
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
.......+++.+.+.+++++-...+.|.+++++.. .... .........
T Consensus 77 ------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~--~~~~------------------------l~~~~~~~P 124 (318)
T 3sov_A 77 ------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LRKV------------------------LFWQELDQP 124 (318)
T ss_dssp ------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEE------------------------EECSSCSSE
T ss_pred ------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC--cEEE------------------------EEeCCCCCc
Confidence 12356789998866646666666788999987631 1000 011112457
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEec
Q 008939 303 NSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~~ 379 (548)
..++++|.+..|+.... .+.|..+++................+.|+++|++..|+.+ ...+.|..+|++.......+
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 88999986666666552 5788888886332222222233456899999976665554 45789999999754332233
Q ss_pred cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+......++++.. + .++.+-...+.|..+|..+++.+..+..
T Consensus 205 ~~~~~~P~glav~~-------~-------~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 205 KGSLPHPFALTLFE-------D-------ILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp CSCCSCEEEEEEET-------T-------EEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred cCCCCCceEEEEeC-------C-------EEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 33345567787754 3 4677777788999999988876655543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.7e-05 Score=81.33 Aligned_cols=255 Identities=14% Similarity=0.158 Sum_probs=142.4
Q ss_pred CCEEEEecCC-eEEEEEccCCCCCCeEEEecCCC-CceEEEecCCCCCCceEEEEEc------CCcEEEEEeeecccccc
Q 008939 142 GTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNS-NPVCHAFDQDAKDGHDLLIGLN------SGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 142 g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~-~~~~~~~~p~~~~~~~l~~g~~------dg~I~iwdl~~~~~~~~ 213 (548)
+..++++..+ .|+.+|.++++ .+-....... ....+...|.-. +..++++.. +|.|+.+|.++ +
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~t-----G 188 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADT-----G 188 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTT-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCC-----C
Confidence 3455555544 88888988865 5555443211 001111111100 335666654 58899999876 3
Q ss_pred cceeeeeee--ccCCc----------------------ccCcceEEEEEecCCCcEEEEEeCCCc---------------
Q 008939 214 KKLVGAHHY--NKDGS----------------------VNNSRCTSVTWVPGGDGAFVVGHADGN--------------- 254 (548)
Q Consensus 214 ~~~~~~~~~--~~~~~----------------------~~~~~v~~l~~~p~~~~~l~s~~~dg~--------------- 254 (548)
+.+...... .+... ........+++.|+.. +++.+..++.
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l 267 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNL 267 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCce
Confidence 333222110 00000 0111223578888877 7888877663
Q ss_pred ----EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCC---EEEEEECCCeEEEE
Q 008939 255 ----LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGT---YLATVGRDGYLRVF 326 (548)
Q Consensus 255 ----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~---~l~s~~~dg~v~vw 326 (548)
|+.+|.++ ++....++..... .|.. ...++....+..+|+ .|+.++.+|.+.++
T Consensus 268 ~~~~v~AlD~~t-G~~~W~~~~~~~~-----------------~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 268 YLSSILAIRPDT-GKLAWHYQVTPGD-----------------SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp TTTEEEEECTTT-CCEEEEEESSTTC-----------------CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred eeeeEEEEcCCC-CceeeEeecCCCc-----------------cccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 77888776 3333332211000 0000 002222223333564 68889999999999
Q ss_pred eCCCCeEEEeeeecC------------Cc------------------------eEEEEEccCCCEEEEEe----------
Q 008939 327 DYSKEQLICGGKSYY------------GA------------------------LLCCAWSMDGKYILTGG---------- 360 (548)
Q Consensus 327 d~~~~~~~~~~~~~~------------~~------------------------v~~l~~spdg~~l~sgs---------- 360 (548)
|.++++++...+... .+ -..++++|+..++++..
T Consensus 330 D~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 409 (668)
T 1kv9_A 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE 409 (668)
T ss_dssp ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC
T ss_pred ECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeee
Confidence 999999874432111 00 01257788776655421
Q ss_pred --------------------------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 361 --------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 361 --------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
.++.|..||+.+++.+-....+. .+....+.. .+ .+++.+
T Consensus 410 ~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-------~g------g~vf~g 475 (668)
T 1kv9_A 410 GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-------AG------NLVFQG 475 (668)
T ss_dssp GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-------TT------TEEEEE
T ss_pred ccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-------CC------CEEEEE
Confidence 23789999999998876655332 222222222 33 277788
Q ss_pred eCCCeEEEEECCCCeEEeeeecC
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+.|+.|+.||.++++.+..++..
T Consensus 476 ~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 476 TAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcccchhhhhhcChhheEecCC
Confidence 99999999999999999888764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00024 Score=74.93 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=103.0
Q ss_pred EEEECCCCCEEEEEECC----------------CeEEEEeCCCCeEEEeeeecCC----------ceEEEEEc-cCC---
Q 008939 304 SIAFSTDGTYLATVGRD----------------GYLRVFDYSKEQLICGGKSYYG----------ALLCCAWS-MDG--- 353 (548)
Q Consensus 304 ~~~~sp~g~~l~s~~~d----------------g~v~vwd~~~~~~~~~~~~~~~----------~v~~l~~s-pdg--- 353 (548)
.+++.++..+++.+..+ +.|..+|.++++.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 35566766677777654 3899999999999877664321 121 2222 567
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCCC-------------CCe--------------------------EEEEEecC
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHN-------------SWV--------------------------SGVAFDSY 394 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~-------------~~V--------------------------~~v~~~p~ 394 (548)
+.++.++.+|.+.++|.++++.+....... .++ ..++|+|
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp- 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP- 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-
Confidence 567788999999999999998775543110 111 1233444
Q ss_pred CCCCCCCCCc----------------------cc---eeEEEEE--Ee------CCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 395 WSQPNSDGTA----------------------ET---VMYRFGS--VG------QDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 395 ~~~~~~dg~~----------------------~~---~~~~l~s--~~------~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
+..- .. ....+.. .+ .++.|..||+.+++.+...+...+..
T Consensus 403 ------~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 476 (599)
T 1w6s_A 403 ------KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW 476 (599)
T ss_dssp ------TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC
T ss_pred ------CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc
Confidence 2200 00 0000111 01 45889999999999988876532211
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHT 485 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~ 485 (548)
. +........+..++.+..++.+|..+++.+..++...
T Consensus 477 ~------g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 477 G------GTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp S------BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred C------cceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 1 1112234566678888899999999999988886543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-05 Score=69.25 Aligned_cols=169 Identities=12% Similarity=0.055 Sum_probs=109.0
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEE
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLY 256 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~ 256 (548)
..+.|+. +.++.+.+.+|.|+.+|+++ ++.+ ... .. .........++++.+.+....++.+.
T Consensus 58 qGL~~~~----~~Ly~stG~~g~v~~iD~~T-----gkv~-~~~-l~-------~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 58 QGLVFHQ----GHFFESTGHQGTLRQLSLES-----AQPV-WME-RL-------GNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEET----TEEEEEETTTTEEEECCSSC-----SSCS-EEE-EC-------TTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred ceEEEEC----CEEEEEcCCCCEEEEEECCC-----CcEE-eEE-CC-------CCcceeEEEEeCCEEEEEEccCCEEE
Confidence 5666652 45666777778999999987 2222 211 11 12222222334444667677889999
Q ss_pred EEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe
Q 008939 257 VYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG 336 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~ 336 (548)
+||..+. +.+..+... ..-..++ +|++.|+....++.|.++|.++.+.+..
T Consensus 120 V~D~~Tl--------------------------~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 120 TWSGMPP--------------------------QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp EEETTTT--------------------------EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE
T ss_pred EEECCcC--------------------------cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE
Confidence 9998862 122222211 1112333 5677887777789999999999988776
Q ss_pred eeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCC-------------CCCeEEEEEec
Q 008939 337 GKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH-------------NSWVSGVAFDS 393 (548)
Q Consensus 337 ~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-------------~~~V~~v~~~p 393 (548)
+.-.. ..++.+.|. +|++.+....++.|.+.|.++++.+.++... .+-.+.|+|+|
T Consensus 171 I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred EEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 65322 245677887 7876655657889999999999988776421 23568999998
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0015 Score=65.45 Aligned_cols=241 Identities=7% Similarity=-0.084 Sum_probs=146.9
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceeeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~ 220 (548)
..+++++....|+..++.... .. .+.-....+..++|++.. +.++++-...+.|+.+++....... ...+..
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~--~~-~~~~~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-- 155 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSE--YT-SLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-- 155 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCS--CE-EEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEEC--
T ss_pred cceeEEeccceeEEEccCCcc--ee-EeccccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEe--
Confidence 356777777899999998643 32 333345688999999872 3344444556788888876411000 011110
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
........|++.+.+.+++++-...+.|.+.+++.. . ....+...-.
T Consensus 156 -------~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~--~------------------------~~~l~~~~~~ 202 (400)
T 3p5b_L 156 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--K------------------------RKTLFRENGS 202 (400)
T ss_dssp -------SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC--S------------------------EEEEEECSSC
T ss_pred -------CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC--c------------------------eEEEEeCCCC
Confidence 023457789998866646666666788888887631 1 0111111224
Q ss_pred CeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEE
Q 008939 301 SINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~ 377 (548)
....++++|.+.+|+.... .+.|...++..................|++++++..|+.+ ...+.|..+|++......
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 282 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE
Confidence 5789999996666666542 3678888886433332233333567899999887766665 456789999987543322
Q ss_pred ecc--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WGE--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+. ..-....+|++. .+ .++.+-...+.|..+|..+++.+..+..
T Consensus 283 ~~~~~~~l~~P~gl~v~--------~~------~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEECSSTTSSEEEEEEE--------TT------EEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEeCCCCCCCCEEEEEe--------CC------EEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 222 223445577774 33 5777777788999999878776666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00026 Score=74.55 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred CCCC---EEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cce--------------------------EE
Q 008939 309 TDGT---YLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GAL--------------------------LC 346 (548)
Q Consensus 309 p~g~---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~v--------------------------~~ 346 (548)
.+|+ .++.++.+|.+.++|.++++++...+... .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4674 57778889999999999999887654221 111 23
Q ss_pred EEEccCCCEEEEEe-------------------------------------CCCeEEEEECCCceeEEeccCCCCCeEEE
Q 008939 347 CAWSMDGKYILTGG-------------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVSGV 389 (548)
Q Consensus 347 l~~spdg~~l~sgs-------------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v 389 (548)
++++|+..+|++.. .++.|..||+.+++.+-++.. ...+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccce
Confidence 57888877776653 347899999999987766542 2222222
Q ss_pred EEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 390 AFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 390 ~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+.. .++ ++..++.|+.|+.||.++++++..++...
T Consensus 470 ~~~t------~gg-------~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 470 TLYT------KGG-------LVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEE------TTT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eEEE------CCC-------EEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 1221 044 56668899999999999999999888643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00014 Score=67.36 Aligned_cols=158 Identities=10% Similarity=0.053 Sum_probs=109.6
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe--EEEEEC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI--NSIAFS 308 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s 308 (548)
.....|.|+. +. ++++.+.+|.|+++|+.+.. ..... .. ... ..+++.
T Consensus 55 ~ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgk-v~~~~--------------------------l~-~~~FgeGit~~ 104 (268)
T 3nok_A 55 AFTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQ-PVWME--------------------------RL-GNIFAEGLASD 104 (268)
T ss_dssp CCEEEEEEET-TE-EEEEETTTTEEEECCSSCSS-CSEEE--------------------------EC-TTCCEEEEEEC
T ss_pred cccceEEEEC-CE-EEEEcCCCCEEEEEECCCCc-EEeEE--------------------------CC-CCcceeEEEEe
Confidence 3446788873 33 77788888999999998732 21111 11 122 235554
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CC---
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HN--- 383 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~--- 383 (548)
.+ ++....-.++.+.+||.++.+.+.++... ..-.. +++|++.|+....++.|.++|.++.+.+..+.- +.
T Consensus 105 g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 105 GE-RLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp SS-CEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred CC-EEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 33 34444446889999999999999888743 22223 346788888877799999999999988877653 22
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| ++++..-.+..|.+.|.++++.+..+..
T Consensus 181 ~~lNeLe~~--------dG------~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 181 ELINELECA--------NG------VIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp CCEEEEEEE--------TT------EEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred ccccccEEe--------CC------EEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 245677876 67 5666666788999999999999887765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=79.79 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=83.3
Q ss_pred ceEEEEEe-cCCCcEEEEEeCCC----cEEEEEcCCC-CCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 232 RCTSVTWV-PGGDGAFVVGHADG----NLYVYEKSKD-GAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 232 ~v~~l~~~-p~~~~~l~s~~~dg----~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
.+...+|+ |||+.++++...+| .|+++|+..+ ...... + . .....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~----------------------~---~---~~~~~~ 226 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK----------------------V---S---GTNGEI 226 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC----------------------E---E---EECSCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc----------------------c---c---CceeeE
Confidence 57789999 99994333444444 4999999863 211000 0 0 113468
Q ss_pred EECCCCCEEEEEECC-----CeEEEEeCCCCeE--EEeee-ecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCc-
Q 008939 306 AFSTDGTYLATVGRD-----GYLRVFDYSKEQL--ICGGK-SYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDR- 373 (548)
Q Consensus 306 ~~sp~g~~l~s~~~d-----g~v~vwd~~~~~~--~~~~~-~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~- 373 (548)
+|+||++.|+....| ..|.++++.+++. +..+. ........+.|+|||++|+.... ...|.++|+.++
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 899999888877765 3588888876531 22222 22344668899999998876553 346888999875
Q ss_pred -ee--EEeccCCCCCeEEEEEec
Q 008939 374 -KV--VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 374 -~~--~~~~~~h~~~V~~v~~~p 393 (548)
+. .............+.|+.
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET
T ss_pred CCceeEEeecCCCCceEEEeeee
Confidence 23 223333455666666653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00023 Score=65.25 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=110.9
Q ss_pred eEEEecCC-CCceEEEecCCCCCCceEEEEEcCC--cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 166 IKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 166 i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
+....+.+ .....+.|+. +.++.+.+..| .|+.+|+.+ .++...... ..........+.+
T Consensus 12 ~~~~phd~~~ftqGL~~~~----~~LyestG~~g~S~v~~vD~~t------gkv~~~~~l-------~~~~fgeGi~~~~ 74 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR----GHLYESTGETGRSSVRKVDLET------GRILQRAEV-------PPPYFGAGIVAWR 74 (243)
T ss_dssp EEEEECCTTCCEEEEEEET----TEEEEEECCTTSCEEEEEETTT------CCEEEEEEC-------CTTCCEEEEEEET
T ss_pred EEEcCCCCccccccEEEEC----CEEEEECCCCCCceEEEEECCC------CCEEEEEeC-------CCCcceeEEEEeC
Confidence 44444322 2345777875 33444444443 799999986 233332221 1222222233334
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
+.+++..-.++.+.+||..+. +.+..+..... =..++ ++++.|+....++.
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl--------------------------~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATL--------------------------TPRARFRYPGE-GWALT--SDDSHLYMSDGTAV 125 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTT--------------------------EEEEEEECSSC-CCEEE--ECSSCEEEECSSSE
T ss_pred CEEEEEEeeCCEEEEEECCcC--------------------------cEEEEEeCCCC-ceEEe--eCCCEEEEECCCCe
Confidence 546666678899999998762 22222222111 12343 56677777677889
Q ss_pred EEEEeCCCCeEEEeeeecC-----CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC-------------CCC
Q 008939 323 LRVFDYSKEQLICGGKSYY-----GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG-------------HNS 384 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~-----~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~-------------h~~ 384 (548)
|.++|.++.+.+..+.-.. ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+.. -..
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 9999999998877765422 345677776 777666665788999999999998877641 123
Q ss_pred CeEEEEEec
Q 008939 385 WVSGVAFDS 393 (548)
Q Consensus 385 ~V~~v~~~p 393 (548)
-.+.|+|+|
T Consensus 205 vlNGIA~d~ 213 (243)
T 3mbr_X 205 VLNGIAFDA 213 (243)
T ss_dssp CEEEEEEET
T ss_pred ceEEEEEcC
Confidence 568999999
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00095 Score=64.19 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=123.7
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~ 207 (548)
..+..++++++|.++++...+ .|+.||.+.. ....+. .+..+..++++++ ++++++..... .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~d---G~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSN---GDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTT---SCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCC---CcEEEEeccCCcceEEEEcCCC
Confidence 345678999999977776554 8999987642 333333 3457899999998 66444433322 366666443
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCC-CCCCCcccccccceeeeecCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDG-AGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
+ ++...... . .......++..+++. .+++-..++.|+++|..... ..........
T Consensus 105 -----g-~~~~~~~~-~----~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~------------ 160 (306)
T 2p4o_A 105 -----G-TVETLLTL-P----DAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLA------------ 160 (306)
T ss_dssp -----S-CEEEEEEC-T----TCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGS------------
T ss_pred -----C-eEEEEEeC-C----CccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccc------------
Confidence 1 11111111 1 112234455445443 44444468889888875310 0000000000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-CeE--EEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK-EQL--ICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~-~~~--~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...+. ..-...+.+ +++++.|+.+. ..+.|.+|++.. ++. ...+.. ......+++.++|+++++....
T Consensus 161 -~~~~~----~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 161 -RSNSE----SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp -CSSTT----CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTT
T ss_pred -ccccc----CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCC
Confidence 00000 000234455 77887666554 567899999874 322 111111 1345678999999887777778
Q ss_pred CeEEEEECCCcee--EEeccCCCCCeEEEEEe
Q 008939 363 DLVQVWSMEDRKV--VAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 363 g~I~vwd~~~~~~--~~~~~~h~~~V~~v~~~ 392 (548)
+.|.++|.. ++. +..+.......++++|.
T Consensus 233 ~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 233 NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp CCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 899999976 554 33344334678999997
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7.7e-05 Score=80.30 Aligned_cols=247 Identities=14% Similarity=0.063 Sum_probs=136.3
Q ss_pred eEEeCC-CCCEEEEecCC------------eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEc-CCc
Q 008939 135 NTNFDG-KGTYIIFNVGD------------AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLN-SGD 199 (548)
Q Consensus 135 ~~~~~~-~g~~l~~~~~d------------~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~-dg~ 199 (548)
.+++.+ +|+++++++.+ .+.+||..+.....+..+.... ....++++.++ +.++++|+. +..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~---g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN---GQIVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT---SCEEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC---CCEEEeCCCCCCc
Confidence 566666 88888886421 5889999987766766654322 23334677776 778888874 457
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CC-----CcEEEEEcCCCCCCCCCcccc
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-AD-----GNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~~~~~~ 273 (548)
+.+||..+..+.....+ . ....-.++...+++. +++.|+ .+ ..+.+||..++. - ..++..
T Consensus 267 v~~yd~~t~~W~~~~~~------~-----~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~-W-~~~~~~ 332 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDM------Q-----VARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT-W-TSLPNA 332 (656)
T ss_dssp EEEEEGGGTEEEECCCC------S-----SCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE-E-EEETTS
T ss_pred eEEecCcCCceeECCCC------C-----ccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc-c-eeCCCc
Confidence 99999876433222111 0 111123455667888 888887 34 568999987521 0 000000
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC---------CCeEEEEeCCCCeEEEeeeecC---
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR---------DGYLRVFDYSKEQLICGGKSYY--- 341 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~--- 341 (548)
.. .++..-. + ...+..+++.++.++. ...+..||..+.........+.
T Consensus 333 ~~--------------~p~~~~~-~-----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 333 KV--------------NPMLTAD-K-----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp CS--------------GGGCCCC-T-----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred cc--------------ccccccc-c-----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc
Confidence 00 0000000 0 0111223333333333 3467889988765433222111
Q ss_pred ------CceEEEEEc-cCCCEEEEEeCCC-----------eEEEEECCCceeEEec--cCCCCCe-EEEEEecCCCCCCC
Q 008939 342 ------GALLCCAWS-MDGKYILTGGEDD-----------LVQVWSMEDRKVVAWG--EGHNSWV-SGVAFDSYWSQPNS 400 (548)
Q Consensus 342 ------~~v~~l~~s-pdg~~l~sgs~dg-----------~I~vwd~~~~~~~~~~--~~h~~~V-~~v~~~p~~~~~~~ 400 (548)
..-.++.|. .++++++.|+.++ .|.+||..+.+..... ..+.... .+++..|
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~------- 465 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP------- 465 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-------
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-------
Confidence 122344444 3778888887542 6888888876544332 2222222 3445566
Q ss_pred CCCccceeEEEEEEeCC-----------CeEEEEECCCCeEE
Q 008939 401 DGTAETVMYRFGSVGQD-----------TRLLLWDLEMDEIV 431 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~D-----------g~i~lwd~~~~~~~ 431 (548)
+| ++++.++.+ ..+.+||..+.+..
T Consensus 466 ~g------~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 466 DG------STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp TS------CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CC------CEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 77 688888865 46899999887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00098 Score=67.56 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=136.4
Q ss_pred CCceeEEeCCC---CCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC-----cEEE
Q 008939 131 TSMTNTNFDGK---GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG-----DVYS 202 (548)
Q Consensus 131 ~~v~~~~~~~~---g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg-----~I~i 202 (548)
..+..++++++ |.+.++.....|+.+|+.++ .+..+......+..++|+++ +. |+++...+ .+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~d---G~-lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLN---GD-MVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTT---CC-EEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCC---CC-EEEEcCCCCcccceEEE
Confidence 35668999985 55554444368999998753 44454445567999999998 66 66555432 1333
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSV 281 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 281 (548)
++..... ....... .......+++.| ++. ++++-..++.|+.+|.... .....+
T Consensus 212 ~~~~~~~--~~~~~~~----------~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g-~~~~~~----------- 266 (433)
T 4hw6_A 212 FTRASGF--TERLSLC----------NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATG-TLTEEE----------- 266 (433)
T ss_dssp ECGGGTT--CCEEEEE----------ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTC-CEEEEE-----------
T ss_pred EECCCCe--ecccccc----------ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCC-eEEEEE-----------
Confidence 3222100 0000100 133457788999 555 5555556778888887631 110000
Q ss_pred ecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC--CCeE--EEeeeec---------------
Q 008939 282 AHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS--KEQL--ICGGKSY--------------- 340 (548)
Q Consensus 282 ~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~--~~~~--~~~~~~~--------------- 340 (548)
+.. ....-..++|+|++++|+.+. ..+.|+.+++. ++.. ...+.+.
T Consensus 267 -------------~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 267 -------------VMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp -------------EECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred -------------eccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 000 012234699999998665554 56789998875 3321 1111111
Q ss_pred CCceEEEEE---------ccCCCEEEEEeCCCeEEEEECCCceeEEeccCC------------------CCCeEEEEEe-
Q 008939 341 YGALLCCAW---------SMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH------------------NSWVSGVAFD- 392 (548)
Q Consensus 341 ~~~v~~l~~---------spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h------------------~~~V~~v~~~- 392 (548)
......+++ .++|.++++-...+.|+.++. ++...... +. -..-..|+++
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 123567888 777877777777889999985 45433222 11 1235678888
Q ss_pred cCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 393 SYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 393 p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ +| .++++-...+.|+.++++
T Consensus 412 ~-------~g------~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 K-------RK------CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp T-------TT------EEEEEEGGGTEEEEEEEC
T ss_pred C-------CC------EEEEEeCCCCEEEEEecC
Confidence 4 66 566666667778777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0044 Score=60.80 Aligned_cols=160 Identities=10% Similarity=-0.046 Sum_probs=100.3
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..++|.+....++++-...+.|+.++++.... .............+++.+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------------------------~~~~~~~~~~p~glavd~ 125 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------------------------EEVVSTGLESPGGLAVDW 125 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------------EEEECSSCSCCCEEEEET
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc--------------------------eEEEeCCCCCccEEEEec
Confidence 345789999987774555555678888888764210 000111113456889987
Q ss_pred CCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEE-EeCC-CeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT-GGED-DLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-gs~d-g~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.+..| ++-...+.|.+.++........+.........+++.|.+..|+. -..+ +.|..++++.......+...-...
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~P 205 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 205 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCE
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCc
Confidence 54444 45455688999998754333223333456789999996655544 4444 789999887543332223234567
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..|+++| ++. +++++-...+.|..+|+..
T Consensus 206 nGla~d~-------~~~-----~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 206 NGLTIDY-------AGR-----RMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred ceEEEeC-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 8999997 542 5666666678899998764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00041 Score=63.57 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=107.1
Q ss_pred CcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe--EEE
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI--NSI 305 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~ 305 (548)
......+.|++ +. ++.+.+.+| .|+.+|+.++. . +...... ... ..+
T Consensus 20 ~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgk-v-------------------------~~~~~l~-~~~fgeGi 70 (243)
T 3mbr_X 20 TAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGR-I-------------------------LQRAEVP-PPYFGAGI 70 (243)
T ss_dssp TCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCC-E-------------------------EEEEECC-TTCCEEEE
T ss_pred ccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCC-E-------------------------EEEEeCC-CCcceeEE
Confidence 34556889986 33 566666544 89999998732 1 1111111 122 234
Q ss_pred EECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC--CC
Q 008939 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG--HN 383 (548)
Q Consensus 306 ~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~--h~ 383 (548)
++.. +++....-.++.+.+||.++.+.+.++..... -..+ .+|++.|+....++.|.++|.++.+.+.++.- +.
T Consensus 71 ~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 71 VAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp EEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred EEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 4432 33344445688999999999999988874322 2333 46777777777789999999999888777653 21
Q ss_pred ---CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 384 ---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 384 ---~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
..++.+.|. +| +.++..-.+..|.+.|.++++.+..+..
T Consensus 147 ~~~~~lNeLe~~--------~G------~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 147 RPLDNLNELEWV--------NG------ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EECCCEEEEEEE--------TT------EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred cccccceeeEEe--------CC------EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 345677775 66 5666666788999999999999888765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0038 Score=62.17 Aligned_cols=183 Identities=11% Similarity=-0.037 Sum_probs=110.5
Q ss_pred EEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 194 GLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 194 g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
-+....|+.+++... ....... ....+..++|.+.+..++++-...+.|+.++++....
T Consensus 92 ~~~~~~I~~i~~~~~------~~~~~~~-------~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-------- 150 (386)
T 3v65_B 92 FANRIDIRQVLPHRS------EYTLLLN-------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-------- 150 (386)
T ss_dssp EECBSCEEEECTTSC------CCEEEEC-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--------
T ss_pred eecCccceeeccCCC------cEEEEec-------CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--------
Confidence 344567888877541 1111111 2345789999987774555655678888888764210
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd 352 (548)
...+.........+++++.+..| ++-...+.|.+.++........+.........+++.|.
T Consensus 151 ------------------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 151 ------------------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp ------------------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT
T ss_pred ------------------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC
Confidence 00001111345678888754444 44455678999988744333333333456789999987
Q ss_pred CCEEEEEe-CC-CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 353 GKYILTGG-ED-DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 353 g~~l~sgs-~d-g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+..|+... .+ +.|..++++...........-.....|+|+| ++. +++++-...+.|..+|+..
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY-------AGR-----RMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG-------GGT-----EEEEEETTTTEEEEECTTS
T ss_pred CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 66555544 34 7898898875433333333345678999997 441 5666666678888888764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0034 Score=58.25 Aligned_cols=212 Identities=12% Similarity=0.131 Sum_probs=123.0
Q ss_pred CCceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~ 207 (548)
..+..++|+|++..|.+ ...+ .|...|+. + +.++.+.+.. ...-.+++.++ +.++++.-.++.++++++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEEEECT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEEEcCC
Confidence 45778999998776665 3334 78888876 3 3677776532 46777888776 55555555667899998865
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
... ........+.......+.....|+|.|.++ .|+++.......+|.++. -.....+....+.. + ..
T Consensus 101 ~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~-~--~~---- 168 (255)
T 3qqz_A 101 NSE---VKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNG-LLSSNELHISKDKA-L--QR---- 168 (255)
T ss_dssp TCC---EEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEES-TTCSSCCEEEECHH-H--HH----
T ss_pred CCe---eeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcc-cccCCceeeecchh-h--cc----
Confidence 211 011111211110112355689999999998 555555555555665541 00000111110000 0 00
Q ss_pred CCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeec---------CCceEEEEEccCCCEEE
Q 008939 288 KSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSY---------YGALLCCAWSMDGKYIL 357 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~ 357 (548)
..+...+.+++++|. +++++.......|.++|.. ++.+..+.-. ......|+|.++|++.+
T Consensus 169 --------~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 169 --------QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp --------TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred --------ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 001135789999994 5566666677889999976 5554443322 12568899999998554
Q ss_pred EEeCCCeEEEEEC
Q 008939 358 TGGEDDLVQVWSM 370 (548)
Q Consensus 358 sgs~dg~I~vwd~ 370 (548)
+ ++-+.++++.-
T Consensus 240 v-sE~n~~y~f~~ 251 (255)
T 3qqz_A 240 V-SEPNRFYRFTP 251 (255)
T ss_dssp E-ETTTEEEEEEC
T ss_pred E-cCCceEEEEEe
Confidence 4 67777776653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0016 Score=65.95 Aligned_cols=237 Identities=14% Similarity=0.203 Sum_probs=133.7
Q ss_pred CCceeEEeCC-CCCEEEEecC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC-C----cEEEE
Q 008939 131 TSMTNTNFDG-KGTYIIFNVG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS-G----DVYSV 203 (548)
Q Consensus 131 ~~v~~~~~~~-~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d-g----~I~iw 203 (548)
..+..++++| ++..|.+... ..|+.+|++.. .+..+.-....+..++|+++ ++.|+++... + .+..+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~~~~~~~~~P~~ia~d~~---G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVSTVYSGLSKVRTICWTHE---ADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEEEEECCCSCEEEEEECTT---SSEEEEEECCSCTTSEEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEEEEecCCCCcceEEEeCC---CCEEEEEeCCCCcccceEEEE
Confidence 3567899998 3444444433 68888998753 34444435567999999998 7766666652 2 23333
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
+..... ..... .. .......++++| ++. ++++-..++.|+.|+...... .
T Consensus 211 ~~~g~~----~~~~~-l~-------~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~-~--------------- 261 (430)
T 3tc9_A 211 TRESGF----KVITE-LT-------KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQET-T--------------- 261 (430)
T ss_dssp EGGGTS----CSEEE-EE-------ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEE-E---------------
T ss_pred eCCCce----eeeee-ec-------cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcE-E---------------
Confidence 322211 10000 00 123457888999 555 666666778899999864110 0
Q ss_pred cCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC--CeE--EEeeeec---------------C
Q 008939 283 HPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK--EQL--ICGGKSY---------------Y 341 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~--~~~--~~~~~~~---------------~ 341 (548)
..... .......++|+|++++|+.+. ..+.|.+++... ++. +..+.+. .
T Consensus 262 ----------~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 262 ----------PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp ----------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred ----------EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 00000 013467899999999655554 567899987753 322 1112111 0
Q ss_pred CceE-EEEEc--------cCCCEEEEEeCCCeEEEEECCCceeEEecc-------C--C--------CCCeEEEEEecCC
Q 008939 342 GALL-CCAWS--------MDGKYILTGGEDDLVQVWSMEDRKVVAWGE-------G--H--------NSWVSGVAFDSYW 395 (548)
Q Consensus 342 ~~v~-~l~~s--------pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~-------~--h--------~~~V~~v~~~p~~ 395 (548)
.... .++.. ++|.++++-...+.|+.++. +++.....- + . -..-..|+++|
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~-- 408 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE-- 408 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET--
T ss_pred CCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC--
Confidence 1122 44443 34666666666788888883 454332221 1 0 12467788876
Q ss_pred CCCCCC-CCccceeEEEEEEeCCCeEEEEECC
Q 008939 396 SQPNSD-GTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 396 ~~~~~d-g~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+ | .++++-.....|+.++++
T Consensus 409 -----~~g------~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 409 -----ERE------CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -----TTT------EEEEEEGGGTEEEEEEEC
T ss_pred -----CCC------EEEEEECCCCeEEEEccC
Confidence 4 4 566666666777777653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00086 Score=73.21 Aligned_cols=114 Identities=9% Similarity=0.104 Sum_probs=68.9
Q ss_pred CceeEEeC-CCCCEEEEecC----C--eEEEEEccCC-CCCCe-EEEecCCCCceEEEecCCCCCCceEEEEEcC-----
Q 008939 132 SMTNTNFD-GKGTYIIFNVG----D--AIFISDLNSQ-DKDPI-KSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS----- 197 (548)
Q Consensus 132 ~v~~~~~~-~~g~~l~~~~~----d--~v~vwd~~~~-~~~~i-~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d----- 197 (548)
.+...+|+ |||++|++... + .|+++|+.++ . .+ ..+.. ....++|+|+ +..|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~~~~~~---~~~~~~WspD---g~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIADKVSG---TNGEIVWGPD---HTSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCCCCEEE---ECSCCEECSS---TTEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCCccccC---ceeeEEEecC---CCEEEEEEECCCCCC
Confidence 56678999 99999997542 2 5999999986 4 11 11111 1346789998 6667766664
Q ss_pred CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCC
Q 008939 198 GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSK 262 (548)
Q Consensus 198 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~ 262 (548)
.+|+++++.+.. ....++ +... .......+.|+|+++.++++... ...|+++|+..
T Consensus 247 ~~v~~~~lgt~~--~~~~lv----~~~~---~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 247 NKVWRHVMGKLQ--SEDVCL----YEEH---NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp EEEEEEETTSCG--GGCEEE----EECC---CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CEEEEEECCCCc--hhcEEE----EecC---CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 258888876521 111111 1100 12345688999999944444432 34677788765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00015 Score=77.95 Aligned_cols=206 Identities=15% Similarity=0.090 Sum_probs=109.8
Q ss_pred CceEEEecC-CCCCCceEEEEEcCC-----------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 175 NPVCHAFDQ-DAKDGHDLLIGLNSG-----------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 175 ~~~~~~~~p-~~~~~~~l~~g~~dg-----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
.....++.+ + +..++.|+.+. .+.+||+.+..+...... . . .+...+.++++.+++
T Consensus 187 ~~~~~av~~~~---g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----~--~---~~~~~~~~~~~~~~g 254 (656)
T 1k3i_A 187 VPAAAAIEPTS---GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----V--T---KHDMFCPGISMDGNG 254 (656)
T ss_dssp CCSEEEEETTT---TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----E--C---SCCCSSCEEEECTTS
T ss_pred CceeEEEEecC---CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----C--C---CCCCccccccCCCCC
Confidence 344566666 4 67788877543 578888876332221110 0 0 023344567888888
Q ss_pred CcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CC
Q 008939 243 DGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RD 320 (548)
Q Consensus 243 ~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~d 320 (548)
. +++.|+ .+..+++||..++. - ...... +. ...-.++++.+++++++.|+ .+
T Consensus 255 ~-lyv~GG~~~~~v~~yd~~t~~-W-~~~~~~-----------------~~------~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 255 Q-IVVTGGNDAKKTSLYDSSSDS-W-IPGPDM-----------------QV------ARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp C-EEEECSSSTTCEEEEEGGGTE-E-EECCCC-----------------SS------CCSSCEEEECTTSCEEEECCCCC
T ss_pred C-EEEeCCCCCCceEEecCcCCc-e-eECCCC-----------------Cc------cccccceEEecCCeEEEEeCccc
Confidence 8 888877 45689999987521 0 000000 00 01123456667899999888 34
Q ss_pred -----CeEEEEeCCCCeEEEee----eecCCceEEEEEccCCCEEEEEeCC---------CeEEEEECCCceeEEeccCC
Q 008939 321 -----GYLRVFDYSKEQLICGG----KSYYGALLCCAWSMDGKYILTGGED---------DLVQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 321 -----g~v~vwd~~~~~~~~~~----~~~~~~v~~l~~spdg~~l~sgs~d---------g~I~vwd~~~~~~~~~~~~h 382 (548)
..+.+||..+.+-...- ......-....+..+++.++.|+.+ ..+..||..+.........+
T Consensus 309 ~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred CCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 56999999887643320 0000000001223455555555544 35678888776533322211
Q ss_pred C---------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----------eEEEEECCCCeE
Q 008939 383 N---------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----------RLLLWDLEMDEI 430 (548)
Q Consensus 383 ~---------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----------~i~lwd~~~~~~ 430 (548)
. ..-.++.|... ++ ++++.|+.+. .|.+||..+.+.
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~------~~------~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAV------KG------KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp EETTEECCCCBTCEEEEEETT------TT------EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred ccccccCCCCCCCceEeccCC------CC------eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 1 12345555431 55 6777777543 566677666543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0012 Score=69.53 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=75.4
Q ss_pred CCC---CEEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cce--------------------------EE
Q 008939 309 TDG---TYLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GAL--------------------------LC 346 (548)
Q Consensus 309 p~g---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~v--------------------------~~ 346 (548)
.+| +.++.++.+|.+.++|.++++++....... .++ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 466 567778899999999999999886654211 011 23
Q ss_pred EEEccCCCEEEEEe---------------------------------------CCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 347 CAWSMDGKYILTGG---------------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 347 l~~spdg~~l~sgs---------------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
++++|+..++++.. .++.|.-||+.+++.+-... +..++.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~ 476 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVW 476 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCcc
Confidence 56777766655432 34678888888887765543 111111
Q ss_pred -E-EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 388 -G-VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 388 -~-v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
. +.- . ++ +++.++.|+.|+.||.++++++..++..
T Consensus 477 ~g~~~t-a-------gg-------~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 477 GGTMAT-A-------GD-------LVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp SBCEEE-T-------TT-------EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcceEe-c-------CC-------EEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 1 221 1 34 6667899999999999999999988764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.006 Score=66.41 Aligned_cols=239 Identities=7% Similarity=-0.072 Sum_probs=145.3
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc-cccceeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD-VGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~-~~~~~~~~~~ 221 (548)
.+|+++....|+..++.... ...+......+..++|++.. +.++++-...+.|+.+++...... ....++.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~---~~~l~~~~~~~~gl~~d~~~--~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--- 467 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--- 467 (791)
T ss_dssp CEEEEECBSSEEEECTTSCC---CEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEEC---
T ss_pred cccccccccceeEeeccCCc---ceeeecCCCceEEEeecccC--CeeEEeeccceeEEEEeccCCCCCcceeEEEe---
Confidence 35666666688888887533 33333355678899999862 344445555677888887642100 0011110
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
........|++.+.+.+++++-...+.|.+.+++.. .. ...+...-..
T Consensus 468 ------~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~--~~------------------------~~l~~~~l~~ 515 (791)
T 3m0c_C 468 ------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KR------------------------KTLFRENGSK 515 (791)
T ss_dssp ------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SE------------------------EEEEECTTCC
T ss_pred ------cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC--eE------------------------EEEEeCCCCC
Confidence 023456789999888756666667788999988631 10 0111112245
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
...|+++|...+|+.... .+.|.+.++........+.........|++.+.+..|+.+ ...+.|...+++.......
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 789999997666666553 2679999987444333333334578899999877666655 4567899999875443333
Q ss_pred ccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 379 GEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 379 ~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
+.. .-....+|++. .+ +++++-...+.|...|..+++.+..+.
T Consensus 596 ~~~~~~l~~P~glav~--------~~------~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EECTTTTSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCCccCCCCEEEEe--------CC------EEEEEECCCCEEEEEeCCCCcceEEee
Confidence 332 22344566664 33 567777778889989987776665554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.05 E-value=0.013 Score=58.56 Aligned_cols=191 Identities=7% Similarity=-0.055 Sum_probs=115.5
Q ss_pred EEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 008939 191 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSF 270 (548)
Q Consensus 191 l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~ 270 (548)
++.-.....|+..++... ....... ....+..|+|.+.+..++++-...+.|+.++++......
T Consensus 85 ~ll~~~~~~I~~i~l~~~------~~~~~~~-------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--- 148 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRS------EYTSLIP-------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--- 148 (400)
T ss_dssp EEEEEETTEEEEECTTSC------SCEEEEC-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C---
T ss_pred eeEEeccceeEEEccCCc------ceeEecc-------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---
Confidence 333445578888887652 1111111 345678999999777455555567888888876411000
Q ss_pred ccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEE
Q 008939 271 PVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 349 (548)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~ 349 (548)
.....+.........+++.+. ++++++-...+.|.+.++........+.........|++
T Consensus 149 -------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav 209 (400)
T 3p5b_L 149 -------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 209 (400)
T ss_dssp -------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEE
T ss_pred -------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEE
Confidence 001111111246778999884 444455556788999999755444334434456789999
Q ss_pred ccCCCEEEEEe-C-CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 350 SMDGKYILTGG-E-DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 350 spdg~~l~sgs-~-dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.|.+.+|+... . .+.|...+++.......+...-.....|+++| ++. +++++-.....|..+|+..
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-------LSG-----RLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEe-------CCC-----EEEEEECCCCEEEEEeCCC
Confidence 99766665544 2 47899999875443333333346778999997 541 4556656678899999865
Q ss_pred C
Q 008939 428 D 428 (548)
Q Consensus 428 ~ 428 (548)
.
T Consensus 278 ~ 278 (400)
T 3p5b_L 278 G 278 (400)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.011 Score=57.09 Aligned_cols=186 Identities=7% Similarity=-0.059 Sum_probs=110.6
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+....|+..|+... ....... ....+..++|.+.+..++++-..++.|+.++++......
T Consensus 7 ~~~~~I~~i~~~~~------~~~~~~~-------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~------- 66 (316)
T 1ijq_A 7 TNRHEVRKMTLDRS------EYTSLIP-------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------- 66 (316)
T ss_dssp ECBSSEEEEETTSC------CCEEEEC-------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred ECCCeEEEEECCCc------ceEehhc-------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-------
Confidence 33457888888752 1111111 234578999999776466666667899999886411000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
.....+...-.....+++++.+..| ++-...+.|.++++........+.........+++.|.+
T Consensus 67 ---------------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 67 ---------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp ----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT
T ss_pred ---------------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC
Confidence 0000011111346789998754444 444567899999987543333333334567899999966
Q ss_pred CEEEEEeC-C-CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 354 KYILTGGE-D-DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 354 ~~l~sgs~-d-g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
..|+.... . +.|...+++...........-.....|+++| ++. +++++-...+.|..+|+..
T Consensus 132 g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~-------~~~-----~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-------LSG-----RLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred CEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEec-------cCC-----EEEEEECCCCeEEEEecCC
Confidence 65555443 3 6888888864332222222345678999998 542 4566666778999999874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0027 Score=66.97 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=77.1
Q ss_pred CCCC---EEEEEECCCeEEEEeCCCCeEEEeeeecC-------------Cc-----------------------------
Q 008939 309 TDGT---YLATVGRDGYLRVFDYSKEQLICGGKSYY-------------GA----------------------------- 343 (548)
Q Consensus 309 p~g~---~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------------~~----------------------------- 343 (548)
.+|+ .++.++.+|.+.++|.++++++....... .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4664 78888999999999999999886654321 00
Q ss_pred ---eEEEEEccCCCEEEEEe---------------------------------CCCeEEEEECCCceeEEeccCCCCCeE
Q 008939 344 ---LLCCAWSMDGKYILTGG---------------------------------EDDLVQVWSMEDRKVVAWGEGHNSWVS 387 (548)
Q Consensus 344 ---v~~l~~spdg~~l~sgs---------------------------------~dg~I~vwd~~~~~~~~~~~~h~~~V~ 387 (548)
-..++++|+..++++.. .++.|.-||+.+++.+-+...+. .+.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 01345666655555432 25789999999998775554221 111
Q ss_pred --EEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 388 --GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 388 --~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
.+.. . +| +++.++.|+.|+.||.++++.+..++...
T Consensus 490 ~g~~~t-a-------gg-------lvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 490 AGVLAT-A-------GN-------LVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp SCCEEE-T-------TT-------EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccceEe-C-------CC-------EEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 1121 2 44 67778999999999999999999888743
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.011 Score=57.29 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=111.3
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEE-EecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKS-IHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~-~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
..+..+.|.+++..++++....| ++..+.+. .+.+.. .......+..+.|++. .+++++..|.|+. ..
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~-----~~~~~g~~g~i~~-S~--- 105 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGN-----EGWIVGEPPIMLH-TT--- 105 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETT-----EEEEEEETTEEEE-ES---
T ss_pred CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCC-----eEEEEECCCeEEE-EC---
Confidence 45778888877877776554454 33333322 122211 0011235677888752 2444556665543 11
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+.++....... .......+..|.+.+++. +++++ .+|.| |.....+..-...
T Consensus 106 --DgG~tW~~~~~----~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~~S~DgG~tW~~~------------------ 157 (327)
T 2xbg_A 106 --DGGQSWSQIPL----DPKLPGSPRLIKALGNGS-AEMIT-NVGAI--YRTKDSGKNWQAL------------------ 157 (327)
T ss_dssp --STTSSCEECCC----CTTCSSCEEEEEEEETTE-EEEEE-TTCCE--EEESSTTSSEEEE------------------
T ss_pred --CCCCCceECcc----ccCCCCCeEEEEEECCCC-EEEEe-CCccE--EEEcCCCCCCEEe------------------
Confidence 11222211110 000234567888877765 55544 45654 3322222211100
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeC--CCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY--SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
...+...+..+++.+++.+++.+...+.++-.|- .+-+.+. ......+..+.+.+++++++ .+.+|.++
T Consensus 158 ------~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~ 228 (327)
T 2xbg_A 158 ------VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIA 228 (327)
T ss_dssp ------ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEE
T ss_pred ------ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEE
Confidence 0112356888999999888776654444444443 3333332 23446788999999987654 45678887
Q ss_pred EEECCCceeEEecc----CCCCCeEEEEEec
Q 008939 367 VWSMEDRKVVAWGE----GHNSWVSGVAFDS 393 (548)
Q Consensus 367 vwd~~~~~~~~~~~----~h~~~V~~v~~~p 393 (548)
+.+.+.++.-..+. .+...+..+.|.+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 77533343322222 1234588899987
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0029 Score=58.66 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=107.7
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..++|+|++..++++...++.|+..|.. +.....++. . -......+++.+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l-----------------------~-g~~D~EGIa~~~ 79 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPL-----------------------D-FVKDLETIEYIG 79 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEEC-----------------------S-SCSSEEEEEECS
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEec-----------------------C-CCCChHHeEEeC
Confidence 45799999999877567778888888888876 322211111 0 014577889998
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeE---EEeee------ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC---ceeEE
Q 008939 310 DGTYLATVGRDGYLRVFDYSKEQL---ICGGK------SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED---RKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~dg~v~vwd~~~~~~---~~~~~------~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~---~~~~~ 377 (548)
++.++++.-.++.+.++++..... +.... .....+..++|+|.++.|+++.+.....||.++. ...+.
T Consensus 80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 887766655678899998764432 22221 1234568999999998777777665555555531 11111
Q ss_pred ec-------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 378 WG-------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 378 ~~-------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.+ ..+...+.+++|+|. .+ .+++.......|..+|.. ++.+..+..
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~------tg------~lliLS~~s~~L~~~d~~-g~~~~~~~L 212 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQ------KN------TLLVLSHESRALQEVTLV-GEVIGEMSL 212 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETT------TT------EEEEEETTTTEEEEECTT-CCEEEEEEC
T ss_pred eecchhhccccccCCceeEEEcCC------CC------eEEEEECCCCeEEEEcCC-CCEEEEEEc
Confidence 11 113346789999982 44 677777788899999976 555554443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.013 Score=56.15 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=94.6
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
.....++|.+++. ++++-..++.|+.||... .. ...+.. ...+.+++++++
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~-------------------------~~~~~~-~~~p~gia~~~d 82 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQ-------------------------QIHATV-EGKVSGLAFTSN 82 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CE-------------------------EEEEEC-SSEEEEEEECTT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ce-------------------------EEEEeC-CCCceeEEEcCC
Confidence 4567899999887 777766788998888653 10 111111 245889999999
Q ss_pred CCEEEEEECC-C-eEEEEeCCCCeEEEeeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee-EEec-------
Q 008939 311 GTYLATVGRD-G-YLRVFDYSKEQLICGGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV-VAWG------- 379 (548)
Q Consensus 311 g~~l~s~~~d-g-~v~vwd~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~-~~~~------- 379 (548)
++++++.... + .|..+|..+++....... .......++..+++..+++-..++.|.++|...++. +...
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 9866554432 2 477778777775432221 122234555556665555555688999999876431 2100
Q ss_pred --cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 380 --EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 380 --~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
...-.....| +| |+. .++++-...+.|..+|+..
T Consensus 163 ~~~~~~~~pngi--s~-------dg~-----~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 163 NSESVFPAANGL--KR-------FGN-----FLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp STTCCSCSEEEE--EE-------ETT-----EEEEEETTTTEEEEEEBCT
T ss_pred cccCCCCcCCCc--Cc-------CCC-----EEEEEeCCCCEEEEEEeCC
Confidence 1111234556 66 652 4667777788999999875
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.016 Score=57.06 Aligned_cols=243 Identities=10% Similarity=0.107 Sum_probs=158.1
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
+.-.+|..+.|+.-.+++++|+|+++ +..+....+.. .+..-.|-.+ + .+.=-.+..|+-|+++.. . .
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~--K~klks~~~~e-~VvfWkWis~----~-~l~lVT~taVyHWsi~~~--s--~ 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMTD-DVTFWKWISL----N-TVALVTDNAVYHWSMEGE--S--Q 137 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTT--TEEEEEEECSS-CCCEEEEEET----T-EEEEECSSEEEEEESSSS--C--C
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHH--hhhhcceecCC-CceEEEecCC----C-eEEEEcCCeeEEecccCC--C--C
Confidence 35567888889988888999999998 55888888644 6777777544 1 233334568999999751 1 1
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
....|.+........|.....+++.++++++|- -.|.+.+|..+.
T Consensus 138 ---P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-------------------------- 188 (494)
T 1bpo_A 138 ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------------------------- 188 (494)
T ss_dssp ---CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--------------------------
T ss_pred ---chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--------------------------
Confidence 112244444445678888888999996666654 347888998875
Q ss_pred CCCeeEeeecCCCeEEEEECCC---CCEEEEEECC---CeEEEEeCCCC---eE-----EEe-e-e--ecCCceEEEEEc
Q 008939 289 SNPIARWHICQGSINSIAFSTD---GTYLATVGRD---GYLRVFDYSKE---QL-----ICG-G-K--SYYGALLCCAWS 350 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~~~d---g~v~vwd~~~~---~~-----~~~-~-~--~~~~~v~~l~~s 350 (548)
+..+.+.+|.+....+.+.-+ .++++.+... +.++|.++... .. ... + . .-.+--.++..+
T Consensus 189 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 189 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp -CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred -cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 334555566555544444321 1345555443 78999998532 11 111 1 1 112334577888
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+.-..+..-..-|.|++||++++.++..-+--.+.|..-+.+. +. .=++.....|.|.--.+.....
T Consensus 268 ~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-------~~------~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-------AT------AGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-------TT------TEEEEEETTCEEEEEEECTTTH
T ss_pred ccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC-------CC------CcEEEEccCceEEEEEEccccc
Confidence 8777888889999999999999999887776667776655554 22 1266666888888777776655
Q ss_pred Ee
Q 008939 431 VV 432 (548)
Q Consensus 431 ~~ 432 (548)
+.
T Consensus 335 vp 336 (494)
T 1bpo_A 335 IP 336 (494)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.017 Score=55.66 Aligned_cols=185 Identities=11% Similarity=-0.018 Sum_probs=111.6
Q ss_pred EcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
+....|+.+++...... ...+.. ....+..++|.+.+..++++-...+.|+.++++.....
T Consensus 10 ~~~~~I~~i~l~~~~~~-~~~~~~----------~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-------- 70 (318)
T 3sov_A 10 ANRRDLRLVDATNGKEN-ATIVVG----------GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-------- 70 (318)
T ss_dssp ECEEEEEEEETTCTTSC-CEEEEE----------EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------
T ss_pred EccCeEEEEECCCCceE-EEEEec----------CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------
Confidence 34567888888762100 011111 12356789999976646666566788988888642110
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg 353 (548)
.......-.....+++.+. +.++++-...+.|.++++........+.........+++.|.+
T Consensus 71 -----------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 71 -----------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp -----------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred -----------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Confidence 0011111145678899874 4444554567889999987443322232344567899999876
Q ss_pred CEEEEEe--CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 354 KYILTGG--EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 354 ~~l~sgs--~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
.+|+... ..+.|...+++.......+...-..-..|+++| ++. .++++-...+.|..+|+..
T Consensus 134 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~-------~~~-----~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 134 GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY-------EEQ-----KLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEET-------TTT-----EEEEEETTTTEEEEEETTS
T ss_pred CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEec-------cCC-----EEEEEECCCCEEEEEcCCC
Confidence 6665554 357888888874332222222334568999998 552 5566666778899999864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0075 Score=61.49 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=140.3
Q ss_pred CceeEEeCCC-CCEEEEecC-C-eEEEEEccCCCCCCeEEEecC----CCCceEEEe-------cCCCCCCceEEEEEcC
Q 008939 132 SMTNTNFDGK-GTYIIFNVG-D-AIFISDLNSQDKDPIKSIHFS----NSNPVCHAF-------DQDAKDGHDLLIGLNS 197 (548)
Q Consensus 132 ~v~~~~~~~~-g~~l~~~~~-d-~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~-------~p~~~~~~~l~~g~~d 197 (548)
.+..++|+|. +..|.++.. . .|++.|++.. .+..+.-. ...+..++| +++ +..|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~---G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADE---AEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCT---TCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCC---CCEEEEEeCC
Confidence 4668999983 444444333 3 7888888753 34444322 125899999 888 6667777665
Q ss_pred C-------cEEEEEeee--cccc-cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcC------
Q 008939 198 G-------DVYSVSLRQ--QLQD-VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKS------ 261 (548)
Q Consensus 198 g-------~I~iwdl~~--~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~------ 261 (548)
+ .|++++... .... .....+. .-..+..++.+|++..++++-..++.|+.+|+.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA----------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec----------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 4 255665322 0000 0001111 122456888999666477777788899999987
Q ss_pred -CCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEE-ECCCeEEEEeC--CCCeEE--
Q 008939 262 -KDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATV-GRDGYLRVFDY--SKEQLI-- 334 (548)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~--~~~~~~-- 334 (548)
. +.......+.... .+ ..+ +.. .......++|+|++++|+.+ .....|+.+++ .++.+.
T Consensus 284 ~t-g~~~tp~~~~~~g-~~----------~~l--~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 284 KN-GGSWDPIVKNNPN-TF----------KQL--FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp HT-TCCCCCBGGGCTT-TE----------EEE--EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred cC-ceeeccccccccc-cc----------cee--EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 3 2110000000000 00 000 001 11346789999999965555 45678888665 333320
Q ss_pred Eeeeec---------------CCceE-EEEEc-------cCCCEEEEEeCCCeEEEEECCCceeEEeccCC---------
Q 008939 335 CGGKSY---------------YGALL-CCAWS-------MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGH--------- 382 (548)
Q Consensus 335 ~~~~~~---------------~~~v~-~l~~s-------pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h--------- 382 (548)
..+.+. ..... .++.. +++.++++-..++.|+.++ .++.. .++-+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCc
Confidence 112111 11233 34444 5667777777788999998 44533 333211
Q ss_pred ---------------CCCeEEEEEecCCCCCCCC-CCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 383 ---------------NSWVSGVAFDSYWSQPNSD-GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 383 ---------------~~~V~~v~~~p~~~~~~~d-g~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
-..-..|++++ + | .++++-.....|+.+++....++...
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~-------~~g------~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDD-------VKE------MFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEET-------TTT------EEEEEETTTTEEEEEEECCCC-----
T ss_pred cccccCCCCchhhhhcCCCcEEEEEC-------CCC------EEEEEeCCCCEEEEEECCCCcccccC
Confidence 12356788887 6 6 56666667788888888776665443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.025 Score=60.00 Aligned_cols=235 Identities=7% Similarity=-0.039 Sum_probs=145.0
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~ 220 (548)
..+|+++....|+..+++... ....+.. .-..+..++|++.. +..+++-..++.|+.+++.... .+.+..
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~--~~~~~~~~~~~~~~~l~~d~~~--~~lywtD~~~~~I~r~~~~g~~---~~~v~~-- 76 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNN--NNVAIPLTGVKEASALDFDVTD--NRIYWTDISLKTISRAFMNGSA---LEHVVE-- 76 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTT--CEEECCCCSCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTSCS---CEEEEC--
T ss_pred CcEEEEEeCCcEEEEECCCCC--cceEEEcCCCCceEEEEEECCC--CEEEEEECCCCeEEEEECCCCC---cEEEEe--
Confidence 357778877899999998643 3333332 22478899999872 3444455567889888876410 111110
Q ss_pred eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 221 ~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
. .......|++.+.+.+++++-...+.|.+.+++.. ....+ ....-.
T Consensus 77 ----~---g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l------------------------~~~~l~ 123 (628)
T 4a0p_A 77 ----F---GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--HRQVL------------------------VWKDLD 123 (628)
T ss_dssp ----S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST--TCEEE------------------------ECSSCC
T ss_pred ----C---CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC--cEEEE------------------------EeCCCC
Confidence 0 12356789998877756666666788998888631 11000 001124
Q ss_pred CeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEE
Q 008939 301 SINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~ 377 (548)
....++++|...+|+.... .+.|...++......... ........|+++++++.|+.+ ...+.|..+|++.... .
T Consensus 124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~ 201 (628)
T 4a0p_A 124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-E 201 (628)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-E
Confidence 5789999996556665542 567888887643332222 344567899999987666655 4567899999975433 2
Q ss_pred eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeee
Q 008939 378 WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPL 434 (548)
Q Consensus 378 ~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~ 434 (548)
.+...-....+|++.. + +++++-...+.|...|..+++....+
T Consensus 202 v~~~~l~~P~glav~~--------~------~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 202 VIADDLPHPFGLTQYQ--------D------YIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEECCSCEEEEEEET--------T------EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EeeccCCCceEEEEEC--------C------EEEEecCCCCEEEEEECCCCCceEEE
Confidence 2332334456788753 3 56777777889999997776544333
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0079 Score=58.05 Aligned_cols=205 Identities=16% Similarity=0.218 Sum_probs=124.2
Q ss_pred CceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC----CCc--EEEEEeC---CCcEEEE
Q 008939 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG----GDG--AFVVGHA---DGNLYVY 258 (548)
Q Consensus 188 ~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~----~~~--~l~s~~~---dg~v~vw 258 (548)
..+++.....+-+.+||+.. +.+. .. ..+.++.+..-|+ ++. ++++... +++|.+|
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G------~~l~-~~--------~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf 104 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDG------KMLH-SY--------NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (355)
T ss_dssp GCEEEEEETTTEEEEEETTS------CEEE-EE--------CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEcCCCCEEEEcCCC------cEEE-Ec--------cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence 44566666778899999953 3322 11 1245566666552 221 2333333 5789999
Q ss_pred EcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE--CC-CCC-EEEEEECCCeEEEEeCC-----
Q 008939 259 EKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF--ST-DGT-YLATVGRDGYLRVFDYS----- 329 (548)
Q Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp-~g~-~l~s~~~dg~v~vwd~~----- 329 (548)
+++............. .|+ ..--..+..+++ +| .++ ++++...+|.+..|++.
T Consensus 105 ~iDp~~~~l~~i~~~~---------------~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 105 AIDGKNGTLQSMTDPD---------------HPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EECTTTCCEEECSCTT---------------SCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EECCCCCceeeccccc---------------cCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 8853222111110000 000 000145667777 77 354 67778889999999983
Q ss_pred --CCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECC-----CceeEEecc-CC-CCCeEEEEEecCCCCCCC
Q 008939 330 --KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSME-----DRKVVAWGE-GH-NSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 330 --~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~-----~~~~~~~~~-~h-~~~V~~v~~~p~~~~~~~ 400 (548)
+.+++.++.- .+.+..|...+....|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+.-+. .
T Consensus 167 ~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~-----~ 240 (355)
T 3amr_A 167 YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYA-----A 240 (355)
T ss_dssp CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEEC-----G
T ss_pred cccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEec-----C
Confidence 3356666664 4578889999988899999999777777755 355665553 22 346888888530 0
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECC-CCeEEeeee
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLE-MDEIVVPLR 435 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~-~~~~~~~~~ 435 (548)
+| ..++|+++-.+..+.+||.+ +.+.+..+.
T Consensus 241 ~g----~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 241 DG----KGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GG----CEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CC----CEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 33 11566666678899999997 566666654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.013 Score=59.13 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=114.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-- 252 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-- 252 (548)
.+..++|+|++. ...|+++...+.|+.+|+.. ..+..... .......|+|++++. ++++-...
T Consensus 140 ~P~gvavd~~s~-~g~Lyv~D~~~~I~~id~~~------g~v~~~~~-------~~~~P~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSN-YDDLYWVGQRDAFRHVDFVN------QYVDIKTT-------NIGQCADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTT-TCEEEEECBTSCEEEEETTT------TEEEEECC-------CCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred CCceEEEccccC-CCEEEEEeCCCCEEEEECCC------CEEEEeec-------CCCCccEEEECCCCC-EEEEcCCCCc
Confidence 578999998411 23466665558899998754 11211111 244678999999998 55554321
Q ss_pred -Cc-EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCC
Q 008939 253 -GN-LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYS 329 (548)
Q Consensus 253 -g~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~ 329 (548)
.. +..++... .... ...+. .-.....++++| ++.++++-..++.|+.+|..
T Consensus 205 ~~~gv~~~~~~~--~~~~-----------------------~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 205 TNTGIYLFTRAS--GFTE-----------------------RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp TSEEEEEECGGG--TTCC-----------------------EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred ccceEEEEECCC--Ceec-----------------------ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 11 22222211 1000 00011 124456789999 67666665567889999998
Q ss_pred CCeEEEeeee--cCCceEEEEEccCCCEEE-EEeCCCeEEEEECC--Ccee--EEeccCC---------------CCCeE
Q 008939 330 KEQLICGGKS--YYGALLCCAWSMDGKYIL-TGGEDDLVQVWSME--DRKV--VAWGEGH---------------NSWVS 387 (548)
Q Consensus 330 ~~~~~~~~~~--~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~--~~~~--~~~~~~h---------------~~~V~ 387 (548)
+++....+.. ....-..++|+|++++|+ +-...+.|+.++++ ++.. ...+.+. -..-.
T Consensus 259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~ 338 (433)
T 4hw6_A 259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPN 338 (433)
T ss_dssp TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEE
T ss_pred CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCc
Confidence 7765222221 122334699999999554 44557899998875 2321 1111111 12356
Q ss_pred EEEE---------ecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 388 GVAF---------DSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 388 ~v~~---------~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
.+++ .+ +| .++++-...++|+.++. .+.
T Consensus 339 giav~~n~~y~~dd~-------~g------~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 339 QGIFVKNEAYAGEED-------EY------DFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEECGGGTTSSC-------CE------EEEEEETTTTEEEEECT-TSE
T ss_pred cEEEEccccccccCC-------CC------cEEEEECCCCEEEEECC-CCC
Confidence 6888 55 55 56666667788888884 453
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.81 E-value=0.067 Score=60.81 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=70.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC---CCceEEEEEc-CCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK---DGHDLLIGLN-SGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~---~~~~l~~g~~-dg~I~iwdl~ 206 (548)
..|..++.+. .+++.+.++.+.+++++.++...+....+ +..+.|+++.|... ....+++|.. |+.|+|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAVGRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEECCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3455555443 35555566677777777543233444444 56899999987532 2578999997 9999999987
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEec-CCCcEEEEEeCCCcEEEEEcCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSK 262 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~ 262 (548)
. .+.+ ...... ......++.+.. ++..+|.+|-.||.+.-+.++.
T Consensus 591 ~-----l~~~-~~~~L~-----~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 591 S-----FELL-HKEMLG-----GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp T-----CCEE-EEEECC-----SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred C-----CCeE-EEEECC-----CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 4 1211 111110 112233343332 2333788999999988777653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0087 Score=58.71 Aligned_cols=238 Identities=9% Similarity=0.042 Sum_probs=119.2
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcC------CcEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNS------GDVY 201 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~d------g~I~ 201 (548)
..+..++|+|+|+++++.....|++++ .+..+.+..+. .....+..++|+|+-.++..|+++... +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346789999999987776666888888 32222232222 123578999999974444556666553 5688
Q ss_pred EEEeeecccccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeCC-------------CcEEEEEcCCCCCCC
Q 008939 202 SVSLRQQLQDVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHAD-------------GNLYVYEKSKDGAGD 267 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~d-------------g~v~vwd~~~~~~~~ 267 (548)
.|++........+.+... +.. ....|. ...|+|.|++. ++++-+.. |.|.-++. ++...
T Consensus 109 r~~~~~~~~~~~~~l~~~--~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~--dG~~p 181 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDG--IPARPHGLHS--GGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTP--EGEPA 181 (352)
T ss_dssp EEEECSSCEEEEEEEEEE--ECCCTTCCCC--CCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECT--TSSBC
T ss_pred EEEeCCCCcCceEEEEEe--CCCCCCCCcC--CceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcC--CCCCC
Confidence 887753110011111111 111 111232 36899999997 55543221 33443333 22111
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCe--------EEEEeCCCCe------
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGY--------LRVFDYSKEQ------ 332 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~--------v~vwd~~~~~------ 332 (548)
...+.... .......|...-.....++|+| ++.++++-..... |.+. ..+.
T Consensus 182 ~~npf~~~------------~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~ 247 (352)
T 2ism_A 182 PGNPFLGR------------RGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPR 247 (352)
T ss_dssp TTCTTTTC------------TTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTT
T ss_pred CCCcccCC------------CCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCc
Confidence 00000000 0001111221123467799999 6665554332222 3332 2221
Q ss_pred ------------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee------EEeccCCCCCeEEEEEec
Q 008939 333 ------------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV------VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 333 ------------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~------~~~~~~h~~~V~~v~~~p 393 (548)
.+..+. +......++| .+|.++++.-..+.|...+++.... ...+..-...+..|++.|
T Consensus 248 ~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 324 (352)
T 2ism_A 248 VVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP 324 (352)
T ss_dssp CCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT
T ss_pred ccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC
Confidence 111221 1223556777 4677666666677888887764321 122212235688899998
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=77.94 Aligned_cols=239 Identities=8% Similarity=-0.054 Sum_probs=132.1
Q ss_pred EEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccccccceeeeeee
Q 008939 144 YIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
+++++....|++.++.... +..+......+..++|++. ...|+.. ...+.|+.+++...........+ .
T Consensus 379 ~ll~~~~~~I~~id~~~~~---~~~~~~~~~~p~gla~d~~---~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--i-- 448 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--I-- 448 (699)
T ss_dssp CBCCCCTTC-CEECTTSCC---EECCSCCCTTCCCCEEETT---TTEEEECCTTTTSBEEEESCCCCC-CCCCCB--C--
T ss_pred eEEecCccceEEEeCCCCc---ceeeeccCcceEEEccccc---cCeEEEEecCCCeEEEEecCCCCCCcceEEE--E--
Confidence 3444455578888887633 2222223457788999886 4445544 45578988887641000000000 0
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
. ........|++.+.+.+++++-...+.|.++++... .... .+.......
T Consensus 449 -~---~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~--~~~~------------------------l~~~~~~~P 498 (699)
T 1n7d_A 449 -S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KRKT------------------------LFREQGSKP 498 (699)
T ss_dssp -C---SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC--CEEE------------------------ECCCSSCCC
T ss_pred -e---CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC--ceEE------------------------EEeCCCCCc
Confidence 0 011234567887655535555556788888887631 1000 000011345
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEE-EEEeCCCeEEEEECCCceeEEec
Q 008939 303 NSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
..++++|.+.+|+.... .+.|.++++........+.........|+|+|++..| ++-...+.|.++|+........+
T Consensus 499 ~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 499 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 67889986555555432 2678887775322211122223446689999976544 45556789999999754333222
Q ss_pred c--CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 380 E--GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 380 ~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
. ........|++.. + .++++....+.|..+|..+++.+..+..
T Consensus 579 ~~~~~~~~P~glavd~-------~-------~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFE-------D-------KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CCSSSCSSCCCCEEET-------T-------EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCcCCCceEeEEEC-------C-------EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 2 1122334566653 3 4667777788999999988888776654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.002 Score=65.27 Aligned_cols=155 Identities=8% Similarity=0.093 Sum_probs=98.2
Q ss_pred cceEEEEEec-CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 231 SRCTSVTWVP-GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 231 ~~v~~l~~~p-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
.....|+|+| ++. .|+++...+.|+.+|+... .+..+.........++|++
T Consensus 137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~---------------------------~v~~~~~~~~~P~~ia~d~ 188 (430)
T 3tc9_A 137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKE---------------------------YVSTVYSGLSKVRTICWTH 188 (430)
T ss_dssp SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTT---------------------------EEEEEECCCSCEEEEEECT
T ss_pred CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCC---------------------------EEEEEecCCCCcceEEEeC
Confidence 3567899998 344 5666655588888887641 1111111235688999999
Q ss_pred CCCEEEEEECC-C----eEEEEeCCCCeEE--EeeeecCCceEEEEEcc-CCCEEEEEeCCCeEEEEECCCceeEEecc-
Q 008939 310 DGTYLATVGRD-G----YLRVFDYSKEQLI--CGGKSYYGALLCCAWSM-DGKYILTGGEDDLVQVWSMEDRKVVAWGE- 380 (548)
Q Consensus 310 ~g~~l~s~~~d-g----~v~vwd~~~~~~~--~~~~~~~~~v~~l~~sp-dg~~l~sgs~dg~I~vwd~~~~~~~~~~~- 380 (548)
++++|+++... + .+.+++.. +... ..+.. ......++++| ++.++++-..++.|..++...+.......
T Consensus 189 ~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 189 EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 99966666542 1 23334432 3221 22222 33466789999 77777777678899999998765422222
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+....-..|+|+| +|. +++++-...+.|..+|...
T Consensus 267 ~~~~~P~gia~~p-------dG~-----~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 QDSGWEFHIQFHP-------SGN-----YAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSSCCEEEEECT-------TSS-----EEEEEETTTTEEEEEEEET
T ss_pred CCCCcceeEEEcC-------CCC-----EEEEEECCCCEEEEEeCCc
Confidence 1234678999999 882 2566666788999988763
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.053 Score=55.22 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=93.1
Q ss_pred CceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEE-------ecCCCcEE
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTW-------VPGGDGAF 246 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------~p~~~~~l 246 (548)
.+..++|+|.. ...|+++.. .+.|+++|+.. +.+..... .+.........|+| ++++. .|
T Consensus 140 ~p~~la~dp~~--~~~Lyv~~~~~~~i~~ID~~~------~~v~~l~~---~~~~~~~~p~~ia~~~~~~~~d~~G~-~l 207 (496)
T 3kya_A 140 DNGRLAFDPLN--KDHLYICYDGHKAIQLIDLKN------RMLSSPLN---INTIPTNRIRSIAFNKKIEGYADEAE-YM 207 (496)
T ss_dssp SEEEEEEETTE--EEEEEEEEETEEEEEEEETTT------TEEEEEEC---CTTSSCSBEEEEEECCCBTTTBCTTC-EE
T ss_pred CCCEEEEccCC--CCEEEEEECCCCeEEEEECCC------CEEEEEEc---cCccccCCCcEEEEeecccccCCCCC-EE
Confidence 57789999831 334555544 46688888765 22222111 11112346899999 99998 55
Q ss_pred EEEeCCC-c------EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEE
Q 008939 247 VVGHADG-N------LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVG 318 (548)
Q Consensus 247 ~s~~~dg-~------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~ 318 (548)
+++...+ . |++++...++....... . ..+..+ .....++++|+ +.++++-.
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~----~-------------~~v~~~----~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSD----I-------------QLIAAY----KQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSCCSTTSC----E-------------EEEEEE----SCCCCEEECTTTCCEEEEET
T ss_pred EEEeCCCCCcccCceEEEEecCCCCceeeccc----c-------------eeeccC----CCceEEEEcCCCCeEEEEEC
Confidence 5555443 2 66666333222110000 0 001111 23457889994 55555666
Q ss_pred CCCeEEEEeCC-------CCeE-----------EEe-ee-ecCCceEEEEEccCCCEE-EEEeCCCeEEEEECC
Q 008939 319 RDGYLRVFDYS-------KEQL-----------ICG-GK-SYYGALLCCAWSMDGKYI-LTGGEDDLVQVWSME 371 (548)
Q Consensus 319 ~dg~v~vwd~~-------~~~~-----------~~~-~~-~~~~~v~~l~~spdg~~l-~sgs~dg~I~vwd~~ 371 (548)
.++.|..+|+. ++.. ... +. ........|+|+|+|++| ++-...+.|+.++..
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 78889999997 5543 111 11 123446789999999954 444567899996653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.11 Score=56.36 Aligned_cols=166 Identities=5% Similarity=-0.092 Sum_probs=103.5
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..|+|.+....++++-...+.|+.+++...... . .....+.........|++.+
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~---------------------~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S---------------------SYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CEEEECSSCSCCCEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-c---------------------ceeEEEecCCCCcceeeeee
Confidence 4567899999976645666666788888887641100 0 00111111124567899988
Q ss_pred CCCEEEE-EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CC-CeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYLAT-VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-ED-DLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~d-g~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
.+..|+. -...+.|.+.++........+.........|++.|.+.+|+... .+ +.|.+.+++.......+...-.+.
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 6655554 44678999999975543333333445688999999766665554 33 789999987554444444344678
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..|++++ .+. +++++-.....|...|+....
T Consensus 561 ~GLavD~-------~~~-----~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 561 NGITLDL-------LSG-----RLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEEET-------TTT-----EEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEec-------CCC-----eEEEEeCCCCcEEEEecCCCc
Confidence 8999987 431 555665667788888886543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.046 Score=53.51 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=121.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe---cCCCCceEEEecCCCCCCceEEEEEcC--------Cc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH---FSNSNPVCHAFDQDAKDGHDLLIGLNS--------GD 199 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~---~~~~~~~~~~~~p~~~~~~~l~~g~~d--------g~ 199 (548)
..+..++|.|+|+++++.....|+++|- .+. +.+..+. .....+..++|+|+-.++..|+++... +.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456899999999777766678888873 322 2333221 123468999999974444556666542 56
Q ss_pred EEEEEeeecc--cccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCCC
Q 008939 200 VYSVSLRQQL--QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGAG 266 (548)
Q Consensus 200 I~iwdl~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~~ 266 (548)
|..|++.... ....+.+... +. ....| ....|+|.|++. ++++-+..+. =+|+.++.++..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~--~~-~~~~h--~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDG--IP-GAYIH--NGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEE--EE-CCSSC--CCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred EEEEEECCCCcCcCccEEEEEc--CC-CCCCc--CCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 7777765420 0001111111 11 11123 246799999997 5555322111 023333322221
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCC---eEEEEeCCC--------C---
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDG---YLRVFDYSK--------E--- 331 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg---~v~vwd~~~--------~--- 331 (548)
...-+. . ....|..--.....++|+| +++++++-.... .|.+..--. +
T Consensus 181 p~~npf-~----------------~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 181 PADNPF-P----------------NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp CTTSSS-T----------------TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCCCC-C----------------CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 000000 0 0112222124466899999 666555432211 233322100 0
Q ss_pred -----eEEEeeeecCCceEEEEEc-------cCCCEEEEEeCCCeEEEEECCCc-eeE--Ee-ccCCCCCeEEEEEec
Q 008939 332 -----QLICGGKSYYGALLCCAWS-------MDGKYILTGGEDDLVQVWSMEDR-KVV--AW-GEGHNSWVSGVAFDS 393 (548)
Q Consensus 332 -----~~~~~~~~~~~~v~~l~~s-------pdg~~l~sgs~dg~I~vwd~~~~-~~~--~~-~~~h~~~V~~v~~~p 393 (548)
..+..+.........++|. .+|.++++.-..+.|...+++.. +.. .. +.+-...+..|++.|
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p 321 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD 321 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC
Confidence 1122221112356778883 57777777767788999998753 222 22 333345788999998
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.021 Score=60.46 Aligned_cols=236 Identities=6% Similarity=-0.045 Sum_probs=133.2
Q ss_pred CEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
.+++....+.|++.++.....+. ..+.-.-..+..++|++. +..|+... ..+.|+.+++... .....+..
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~~~~ld~~~~---~~~ly~sD~~~~~I~r~~~~g~--~~~~~v~~--- 80 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENA-TIVVGGLEDAAAVDFVFS---HGLIYWSDVSEEAIKRTEFNKT--ESVQNVVV--- 80 (619)
T ss_dssp CCEEEECSSBEEEECCC----------CBCCSCEEEEEEETT---TTEEEEEETTTTEEEEEEC-------CEEEEC---
T ss_pred ceEEEeccccEEEEeCCCCcceE-EEEEcCCCceEEEEEEeC---CCEEEEEECCCCeEEEEEccCC--CceEEEEe---
Confidence 34666677789999998632112 222223457889999987 44455444 4677888887652 00011110
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
. .......|++.+.+.+++++-...+.|.+.+++.. ....+ ....-..
T Consensus 81 ---~---~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~--~~~~l------------------------~~~~l~~ 128 (619)
T 3s94_A 81 ---S---GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS--LRKVL------------------------FWQELDQ 128 (619)
T ss_dssp ---S---SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE------------------------ECSSCSC
T ss_pred ---C---CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC--CEEEE------------------------EeCCCCC
Confidence 0 12467899999977746666667789999998641 11000 0011245
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~ 378 (548)
...++++|.+.+|+.... .+.|...++..................|+++++++.|+.+ ...+.|..+|++.......
T Consensus 129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 208 (619)
T 3s94_A 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV 208 (619)
T ss_dssp CCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--
T ss_pred CceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE
Confidence 678999997556665553 4577777776332222222334567899999976665555 4567899999875443322
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEee
Q 008939 379 GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVP 433 (548)
Q Consensus 379 ~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~ 433 (548)
+.+.-....+|++.. + +++.+-...+.|...|..+++.+..
T Consensus 209 ~~~~~~~P~gi~~~~-------~-------~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 209 VKGSLPHPFALTLFE-------D-------ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp -------CCCEEESS-------S-------EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred EeCCCCCceEEEEeC-------C-------EEEEecCCCCEEEEEECCCCcccEE
Confidence 221222234566654 2 4666666778899999877754433
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.08 Score=51.58 Aligned_cols=200 Identities=14% Similarity=0.098 Sum_probs=111.8
Q ss_pred ceeEEeCCCCCEEEEe-------------cCCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEE
Q 008939 133 MTNTNFDGKGTYIIFN-------------VGDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLL 192 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~-------------~~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~ 192 (548)
...+...++|..++++ ....|.++|+++... ....+.... -.+..+.+.++..+..+|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 3456678887666655 233899999885321 233444332 3778888877522222455
Q ss_pred EEE-c--CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe---C--------------C
Q 008939 193 IGL-N--SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH---A--------------D 252 (548)
Q Consensus 193 ~g~-~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~---~--------------d 252 (548)
++. . +..|.+|+++.. .........+.. . .-...+++.+.++|. +.++.. . .
T Consensus 131 Vvnh~~~~s~ielf~~d~~----~~~~~~~~~~~g--~-~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEE----EKSLLHLKTIRH--K-LLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEECSTTCCEEEEEEEETT----TTEEEEEEEECC--T-TCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEECCCCCCeEEEEEEECC----CCEEEEEecccc--C-CCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCc
Confidence 543 3 356888887642 111111111111 1 235689999999987 444432 1 1
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCC-
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSK- 330 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~- 330 (548)
|.|+.+|.. .+..+...-...+.++|+||++.|+.+. ..+.|..|++..
T Consensus 203 g~vyr~d~~-----------------------------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 203 SFVTYYSPN-----------------------------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp EEEEEECTT-----------------------------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cEEEEEECC-----------------------------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 333333321 0111111124578999999998887765 568899999863
Q ss_pred CeE--EEeeeecCCceEEEEEcc-CCCEEEEEeCC-CeEEEEECC
Q 008939 331 EQL--ICGGKSYYGALLCCAWSM-DGKYILTGGED-DLVQVWSME 371 (548)
Q Consensus 331 ~~~--~~~~~~~~~~v~~l~~sp-dg~~l~sgs~d-g~I~vwd~~ 371 (548)
+++ ...+ ...+..-.+++.+ +|++.+++..+ +.|..||-+
T Consensus 254 g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 254 WTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 332 1223 2345567788998 59877766533 345555544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.031 Score=54.06 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=121.9
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCC-CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQD-KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
...+..+.|++ +..++.+....|+. ..+.+. ...+......+..+..+.+.++ +. ++++..+|.|+.-
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~~~g~v~~S----- 147 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGN---GS-AEMITNVGAIYRT----- 147 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEET---TE-EEEEETTCCEEEE-----
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECC---CC-EEEEeCCccEEEE-----
Confidence 34567788876 44444443334433 223222 1121111012334666766554 33 4444556655321
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
.+.++....... .....+..+.+.|++. +++++ .+|.++.-+ +..+..-... .
T Consensus 148 -~DgG~tW~~~~~------~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~-d~gG~tW~~~---~-------------- 200 (327)
T 2xbg_A 148 -KDSGKNWQALVQ------EAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTW-EPGQTAWEPH---N-------------- 200 (327)
T ss_dssp -SSTTSSEEEEEC------SCCCCEEEEEECTTSC-EEEEE-TTSSEEEEE-CTTCSSCEEE---E--------------
T ss_pred -cCCCCCCEEeec------CCCcceEEEEEcCCCc-EEEEE-CCCcEEEEe-CCCCCceeEC---C--------------
Confidence 122222221111 1345688999999877 55555 456554432 1101111000 0
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee----cCCceEEEEEccCCCEEEEEeCCCe
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS----YYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
......+..+.+.++++++ .++.+|.+++.+...++.-..+.. ....+.++++.+++++++++. ++.
T Consensus 201 -------~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~ 271 (327)
T 2xbg_A 201 -------RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA 271 (327)
T ss_dssp -------CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC
T ss_pred -------CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe
Confidence 0112567889999988755 455788887764332332222221 223588999998887766664 666
Q ss_pred EEEEECCCceeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 365 VQVWSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
| ++..+.++.-..+. .+...+..|.|.+ ++ .++.++.+|.|.-++-
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-------~~-------~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-------PD-------QGFILGQKGILLRYVT 320 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-------TT-------EEEEECSTTEEEEECC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-------CC-------ceEEEcCCceEEEEcC
Confidence 6 45555454333332 2345678899976 55 5777888998877653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.027 Score=54.34 Aligned_cols=211 Identities=14% Similarity=0.141 Sum_probs=123.0
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCC-CCc--eEEEEEc----CCcEEEEEeeeccccc
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAK-DGH--DLLIGLN----SGDVYSVSLRQQLQDV 212 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~-~~~--~l~~g~~----dg~I~iwdl~~~~~~~ 212 (548)
...+++....+ .|.|||+. + +.+..+.. ..+.-+...|.-. .+. .|++++. +++|.+|++....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G--~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--- 110 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-G--KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--- 110 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-S--CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT---
T ss_pred CccEEEEEcCCCCEEEEcCC-C--cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC---
Confidence 34444443333 99999994 3 36666643 4666666666311 011 1444443 4679999885210
Q ss_pred ccceeeeeeeccCCcccCcceEEEEE--ecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTW--VPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~--~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
+++................+..+++ +|. +..++++...+|.+..|++...+..... .
T Consensus 111 -~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-------------------~ 170 (355)
T 3amr_A 111 -GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-------------------G 170 (355)
T ss_dssp -CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-------------------E
T ss_pred -CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-------------------c
Confidence 1111110000000001256677777 664 4336888888999999998542211110 1
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----CCeEEEeee-e-cCCceEEEEE--ccCCC-EEEEE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-----KEQLICGGK-S-YYGALLCCAW--SMDGK-YILTG 359 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-----~~~~~~~~~-~-~~~~v~~l~~--spdg~-~l~sg 359 (548)
+.++.+... +.+..|...+....|+.+-++.-|..++.+ +++++..+. + ....+..|++ .++++ +|++.
T Consensus 171 ~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 171 KKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp EEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred eEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 234444443 578899999988899999998777777755 345554432 1 2236777877 55666 56665
Q ss_pred e-CCCeEEEEECC-CceeEEecc
Q 008939 360 G-EDDLVQVWSME-DRKVVAWGE 380 (548)
Q Consensus 360 s-~dg~I~vwd~~-~~~~~~~~~ 380 (548)
+ .+....+||.+ +.+.+..|.
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEE
T ss_pred cCCCCEEEEEECCCCCcEEEEEE
Confidence 5 57899999997 566666663
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0088 Score=56.99 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++. -++++++.|+.+ ..+.+||+++.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 56677777654 4588999987754322 111111112222 266777777764 468999998765432
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
.+.........+.+ ++ ++++.++.+ ..|.+||+++.+-.
T Consensus 237 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL---------RG------RLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp ECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCCcccceeEEEE---------CC------EEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 22222222233333 55 577777765 46788888876543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0075 Score=57.70 Aligned_cols=163 Identities=12% Similarity=0.175 Sum_probs=106.0
Q ss_pred ceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEE---
Q 008939 232 RCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF--- 307 (548)
Q Consensus 232 ~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--- 307 (548)
-..+++|.+... .|+.++ ..+.|..||...+......++... +..++ ...+..+.|
T Consensus 14 yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s------------~~g~~-------~~~~sGl~~~~~ 73 (334)
T 2p9w_A 14 TPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS------------SNGDG-------EQQMSGLSLLTH 73 (334)
T ss_dssp CCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEECCTTTC------------CSSCC-------SEEEEEEEESSS
T ss_pred CCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEEecCCcc------------ccCCC-------cceeeEEEEecc
Confidence 345789998776 566655 789999999864211111111000 00000 013578999
Q ss_pred CCCCCEEEEEEC-------------CCeEEEEeCC---CCeEEEeee--e-----------cCCceEEEEEccCCCEEEE
Q 008939 308 STDGTYLATVGR-------------DGYLRVFDYS---KEQLICGGK--S-----------YYGALLCCAWSMDGKYILT 358 (548)
Q Consensus 308 sp~g~~l~s~~~-------------dg~v~vwd~~---~~~~~~~~~--~-----------~~~~v~~l~~spdg~~l~s 358 (548)
.|+++++++... +..|..||+. +++.+.... . -......++..++|+..++
T Consensus 74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt 153 (334)
T 2p9w_A 74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA 153 (334)
T ss_dssp SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence 688777775442 6789999999 777654432 1 1134889999999999998
Q ss_pred EeCC-CeEEEEECCCceeEEecc-----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 359 GGED-DLVQVWSMEDRKVVAWGE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 359 gs~d-g~I~vwd~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
++.- +.|..++.+.......+. ......+.|+++| || ++|+....++.|..+|+..
T Consensus 154 ~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p-------dg------~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 154 FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP-------HS------NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET-------TT------TEEEEESSSSSEEEEECSS
T ss_pred CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC-------CC------CEEEEEcCCCeEEEEcCCC
Confidence 8888 888887776443332221 1122367999999 98 5676666699999999884
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.12 Score=49.50 Aligned_cols=177 Identities=8% Similarity=0.068 Sum_probs=105.5
Q ss_pred EecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeeeecc-C--CcccCcceEEEEE---ecC
Q 008939 169 IHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHHYNK-D--GSVNNSRCTSVTW---VPG 241 (548)
Q Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~l~~---~p~ 241 (548)
+....-.+-|.+|++. ...|++++ ..|.|..||.... ..... .+.. . +. ....+..|.| .|+
T Consensus 8 ~~~~~~yPE~~~wd~~---~g~~~vs~l~~g~V~~~~~~~~------~~~~~-~~~~~s~~g~-~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRT---RQVFYQSNLYKGRIEVYNPKTQ------SHFNV-VIDGASSNGD-GEQQMSGLSLLTHDNS 76 (334)
T ss_dssp ECCTTCCCSCEEEETT---TTEEEEEETTTTEEEEECTTTC------CEEEE-CCTTTCCSSC-CSEEEEEEEESSSSSC
T ss_pred ecCcccCCcCccCcCC---CCEEEEEeccCCEEEEEcCCCC------eEEEE-ecCCccccCC-CcceeeEEEEeccCCC
Confidence 3445557788999886 44555555 7899999987631 11111 1110 0 10 1234589999 588
Q ss_pred CCcEEEEEe-------------CCCcEEEEEcC---CCCCCCCCcc--cccccceeeeecCCCCCCCCeeEeee-cCCCe
Q 008939 242 GDGAFVVGH-------------ADGNLYVYEKS---KDGAGDSSFP--VIKDQTQFSVAHPRYSKSNPIARWHI-CQGSI 302 (548)
Q Consensus 242 ~~~~l~s~~-------------~dg~v~vwd~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 302 (548)
+. ++++.. .+..|..||+. +.. ...... ..... + +...+ --..+
T Consensus 77 gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~--~-------------~~~~g~~~~~~ 139 (334)
T 2p9w_A 77 KR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDE--F-------------EKKAGKRPFGV 139 (334)
T ss_dssp CE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHH--H-------------HHHHSSCCEEE
T ss_pred Cc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCcccccc--c-------------cccccccccCC
Confidence 65 666544 25778899987 421 111110 00000 0 00000 00247
Q ss_pred EEEEECCCCCEEEEEECC-CeEEEEeCCCCeEEEeee-----ecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc
Q 008939 303 NSIAFSTDGTYLATVGRD-GYLRVFDYSKEQLICGGK-----SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR 373 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~~d-g~v~vwd~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~ 373 (548)
..++..++|+..++++.- +.|...+........... ......+.|+++|+|+.|++....+.|..+|+++.
T Consensus 140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 140 VQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred ceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 899999999988888877 887777776332221111 11223678999999999888877999999999853
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.13 Score=49.89 Aligned_cols=236 Identities=11% Similarity=0.132 Sum_probs=118.6
Q ss_pred CCceeEEeCCCCCEEEEec-CCeEEEEEccCCCCCCeEEEe----cCCCCceEEEecCCCCCCceEEEEE---cCCcEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNV-GDAIFISDLNSQDKDPIKSIH----FSNSNPVCHAFDQDAKDGHDLLIGL---NSGDVYS 202 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~d~v~vwd~~~~~~~~i~~~~----~~~~~~~~~~~~p~~~~~~~l~~g~---~dg~I~i 202 (548)
..+..++|.|+|.++++.. ...|++++...+...++..+. .....+..++|+|+-.....|++.. .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3456899999999888876 458888876543322232221 1234678999999632233455543 3455666
Q ss_pred EEeeeccc---c--cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCc-----------EEEEEcCCCCCC
Q 008939 203 VSLRQQLQ---D--VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGN-----------LYVYEKSKDGAG 266 (548)
Q Consensus 203 wdl~~~~~---~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~-----------v~vwd~~~~~~~ 266 (548)
|.+..... . ..+.++.. .. ....| .-..|.|.|++. ++++.+..+. =+||.++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~--~p-~~~~H--~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRG--IP-KGVIH--NGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEE--EC-CCSSC--CCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEeCCCCcccccCCCcEEEEEc--CC-CCCCc--cCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 66543100 0 11111111 11 12223 346799999997 5555332111 122333322211
Q ss_pred CCCcccccccceeeeecCCCCCCCC---eeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCe----------
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNP---IARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQ---------- 332 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~---------- 332 (548)
. ..+| ...|.........++|+|+|.+.++- +.|+.-.|--+..+.
T Consensus 186 p--------------------~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~ 245 (347)
T 3das_A 186 A--------------------PGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGK 245 (347)
T ss_dssp C--------------------TTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSS
T ss_pred c--------------------CCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCC
Confidence 0 0111 11232222456789999988765543 223322222222221
Q ss_pred --------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCcee----EEeccCCCCCeEEEEEec
Q 008939 333 --------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKV----VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 333 --------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~----~~~~~~h~~~V~~v~~~p 393 (548)
.+..+..+......++|. +|..++..-....|....++.... ...+.+....+..|+..|
T Consensus 246 ~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 246 GGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp CCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred CCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 111122121244566665 466666666666776667655432 234444456789999999
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.27 Score=51.99 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=138.6
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
..+++++....|+-..+..... +-..+.. .-..+..++|++. ...|+... ..+.|+.+++... ....++..
T Consensus 308 ~~~Ll~s~~~~i~~i~l~~~~~-~~~~l~~~~~~~~~~ld~d~~---~~~iy~sD~~~~~I~r~~~~g~---~~~~v~~~ 380 (628)
T 4a0p_A 308 TTFLLFSQKSAINRMVIDEQQS-PDIILPIHSLRNVRAIDYDPL---DKQLYWIDSRQNMIRKAQEDGS---QGFTVVVS 380 (628)
T ss_dssp SSEEEEEETTEEEEECCCTTCC-CCEECCCTTCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSC---SCEEEEC-
T ss_pred cceeeeeccceEEEEecccccC-ceEEEEehhcCCceEEEEecC---CCeEEEEecCcceEEEEEcCCC---CceEEEEc
Confidence 3466666666676666654221 1112222 2246788999887 33454444 4567887776531 00111110
Q ss_pred eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
. ..+......+..|++...+.+++++-...+.|.+.+++. .... ..+....
T Consensus 381 ~---~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G--~~~~------------------------~l~~~~l 431 (628)
T 4a0p_A 381 S---VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG--RSVG------------------------VVLKGEQ 431 (628)
T ss_dssp ----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CEEE------------------------EEEECTT
T ss_pred c---cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC--CeEE------------------------EEEeCCC
Confidence 0 000001346789999998876667777788899988763 1100 0111122
Q ss_pred CCeEEEEECC-CCCEEEEEECCC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCcee
Q 008939 300 GSINSIAFST-DGTYLATVGRDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKV 375 (548)
Q Consensus 300 ~~v~~~~~sp-~g~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~ 375 (548)
....++++.| .|.++.+-.... .|...++.-..........-...+.|++.++++.|..+. ..+.|...|++....
T Consensus 432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR 511 (628)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence 5688999999 555444433232 566677753322222232345678999999877776654 468899999964433
Q ss_pred EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 376 VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 376 ~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.......-....+|+.. ++ +++.+-.....|...|..+++....+.
T Consensus 512 ~~~~~~~~~~P~glav~--------~~------~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 512 IVLEDSNILQPVGLTVF--------EN------WLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEECSSCSCEEEEEEE--------TT------EEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEcCCCCCcEEEEEE--------CC------EEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 22222333455677775 33 567777677888888888776555444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0019 Score=69.71 Aligned_cols=220 Identities=10% Similarity=-0.077 Sum_probs=120.4
Q ss_pred CCceeEEeCCCCCEEEEec-C-CeEEEEEccCCC--CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 131 TSMTNTNFDGKGTYIIFNV-G-DAIFISDLNSQD--KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~-~-d~v~vwd~~~~~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
..+..++|++.+..|.++. . +.|+.+++.... ......+......+..+++++.. +.++++-...+.|.++++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~--g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH--SNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS--SBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC--CcEEEEeccCCeEEEEecC
Confidence 3456789998777777753 2 389999987511 01111111122356778888652 3444444556789888876
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.. ....... ........|++.|.+..++++-... +.|++++++. .....+.
T Consensus 484 g~------~~~~l~~------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~-------------- 535 (699)
T 1n7d_A 484 GV------KRKTLFR------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLV-------------- 535 (699)
T ss_dssp SC------CEEEECC------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEES--------------
T ss_pred CC------ceEEEEe------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEE--------------
Confidence 41 1111100 0123457888998766344433222 6677666542 1111100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEEeCC
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
...-...+.|+|+|++..|+.+ ...+.|.++++........+. ........|++..+ .++++....
T Consensus 536 ----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 536 ----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp ----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred ----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 0001345689999976555554 456789999996433222221 11223345566544 455566667
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEE
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~ 391 (548)
+.|..+|..+++.+..+.........|++
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred CeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 89999999888887777543333444543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.018 Score=55.00 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCEEEEEEC---------CCeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCc
Q 008939 310 DGTYLATVGR---------DGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDR 373 (548)
Q Consensus 310 ~g~~l~s~~~---------dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~ 373 (548)
++++++.|+. -..+.+||+.+.+-... +....... +++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 5566666653 34588999987754322 11111111 22222 66777777653 46899999876
Q ss_pred eeE--EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 374 KVV--AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 374 ~~~--~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
+-. ..+.........+.+ ++ .+++.++.+ ..+.+||+.+.+-.
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV---------GS------IVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE---------TT------EEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred cEEECCCCCCCccceeEEEE---------CC------EEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 532 222222223334444 44 678888754 56888999887644
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.16 Score=49.50 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=90.3
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccC-CcccCcceEEEEEecC--CC-cEEEEEeC--CCcEEEEEcCCCCCCCCC
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKD-GSVNNSRCTSVTWVPG--GD-GAFVVGHA--DGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~--~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~ 269 (548)
.+|.|.++|+.+.... .+++ ..... .....-....|.+.++ +. .++++-+. +..|.+|+++.++.....
T Consensus 81 ~~G~I~~~d~~~~~~~-~~~l----~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPA-VSEL----EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH 155 (355)
T ss_dssp -CCEEEEEETTSSSCC-EEEC----EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEecCCCCCc-eEEE----EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEE
Confidence 6899999998742111 0111 11100 0112345667777663 43 24555444 568889888754321111
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeec-CCCeEEEEECCCCCEEEEEEC-----------------CCeEEEEeCCCC
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHIC-QGSINSIAFSTDGTYLATVGR-----------------DGYLRVFDYSKE 331 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~-----------------dg~v~vwd~~~~ 331 (548)
+..+... -...+.+.+.++|.+.++... .|.|..+|. +
T Consensus 156 ----------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 156 ----------------------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp ----------------------EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred ----------------------EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 1111111 146789999999987776531 244555554 3
Q ss_pred eEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCC-cee--EEeccCCCCCeEEEEEec
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMED-RKV--VAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~-~~~--~~~~~~h~~~V~~v~~~p 393 (548)
+... +...-...+.++|+||++.|+++. ..+.|..|+++. ++. ...+. .....-.+++++
T Consensus 212 ~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~ 275 (355)
T 3sre_A 212 DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDP 275 (355)
T ss_dssp CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECT
T ss_pred eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeC
Confidence 3222 222234578899999998777665 578999999863 322 12221 234456667765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.33 Score=51.33 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CCEEEEecCCeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeecccccccceeee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLVGA 219 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~~~ 219 (548)
..+|+++....|+..++.......+ .+.. .-..+..++|++. ...|+.. ...+.|+.+++.... ...+..
T Consensus 317 ~~~Ll~~~~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~---~~~ly~sD~~~~~I~r~~~~g~~---~~~v~~- 388 (619)
T 3s94_A 317 TELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPV---EGYIYWTDDEVRAIRRSFIDGSG---SQFVVT- 388 (619)
T ss_dssp SEEEEEEESSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETT---TTEEEEEETTTTEEEEEETTSCS---CEEEEC-
T ss_pred ceEEEEEcccceEEEecCCCcccee-EEeccccCccEEEEEEcC---CCeEEEEeCCCCeEEEEEcCCCc---cEEEEE-
Confidence 3466676666788888876442222 1222 2246788999986 3345544 456788888876410 011110
Q ss_pred eeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecC
Q 008939 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQ 299 (548)
Q Consensus 220 ~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 299 (548)
. .......|++...+.+++++-...+.|.+.+++.. ....+ ....-
T Consensus 389 -----~---~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~--~~~~l------------------------~~~~l 434 (619)
T 3s94_A 389 -----A---QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT--MRKIL------------------------ISEDL 434 (619)
T ss_dssp -----S---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEE------------------------ECTTC
T ss_pred -----C---CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC--eEEEE------------------------EECCC
Confidence 0 12456789998766646666667788999888641 11000 00112
Q ss_pred CCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCceeE
Q 008939 300 GSINSIAFSTDGTYLATVGR--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVV 376 (548)
Q Consensus 300 ~~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~~ 376 (548)
....++++.|...+|+.... ...|...++.-................|++++++..|..+. ..+.|..++++.....
T Consensus 435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~ 514 (619)
T 3s94_A 435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR 514 (619)
T ss_dssp CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence 56789999996445555542 35677777753222222233345678999998776666654 4578999998644322
Q ss_pred EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 377 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 377 ~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..+...-....+|+.. ++ +++.+-...+.|...|..++.
T Consensus 515 ~~~~~~l~~P~glav~--------~~------~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 515 VLVEDKIPHIFGFTLL--------GD------YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEECCCCSSCCEEEE--------TT------EEEEECTTSSCEEEEESSSCC
T ss_pred EEeccCCCCcEEEEEE--------CC------EEEEeecCCCeEEEEEcCCCc
Confidence 2222222222345554 22 455555566677777777663
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.022 Score=54.20 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCCEEEEEECC-------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCcee
Q 008939 310 DGTYLATVGRD-------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKV 375 (548)
Q Consensus 310 ~g~~l~s~~~d-------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~ 375 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..+.+||+++.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 55666666532 3588999987754322 21111111 2222 267777887764 3689999987653
Q ss_pred EE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCCCeEE
Q 008939 376 VA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEMDEIV 431 (548)
Q Consensus 376 ~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~~~~~ 431 (548)
.. .+......-..+.+ ++ .+++.|+.++ .+.+||+.+.+-.
T Consensus 233 ~~~~~~~~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCAV---------NG------LLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eeCCCCCCccccCeEEEE---------CC------EEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 32 22211122223333 55 6777777653 4888888877643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.14 Score=48.91 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCCEEEEEEC-C-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC-----eEEEEECCCceeE
Q 008939 310 DGTYLATVGR-D-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD-----LVQVWSMEDRKVV 376 (548)
Q Consensus 310 ~g~~l~s~~~-d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~vwd~~~~~~~ 376 (548)
++++++.|+. + ..+.+||+.+.+-... +........++. -++++++.|+.++ .+.+||+++.+-.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 5566777765 2 4689999987753322 111111112222 2677888887654 5888999876533
Q ss_pred E--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------------CeEEEEECCCCeEEee
Q 008939 377 A--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------------TRLLLWDLEMDEIVVP 433 (548)
Q Consensus 377 ~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------------g~i~lwd~~~~~~~~~ 433 (548)
. .+.........+.+ ++ ++++.|+.+ ..|.+||+.+.+-...
T Consensus 226 ~~~~~p~~r~~~~~~~~---------~~------~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 226 PFEAFPQERSSLSLVSL---------VG------TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EECCCSSCCBSCEEEEE---------TT------EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ECCCCCCcccceeEEEE---------CC------EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2 22222222233333 45 577777764 2477889988765544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.38 Score=46.85 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG 241 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 241 (548)
-..+..++|.|+ ++.|+++...|.|++++...... ..+.. ..............|+|+|+
T Consensus 17 l~~P~~i~~~pd---G~~l~V~e~~G~i~~~~~~g~~~---~~~~~---~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 17 LDHPWALAFLPD---NHGMLITLRGGELRHWQAGKGLS---APLSG---VPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp ESSEEEEEECST---TCCEEEEETTTEEEEEETTTEEC---CCCBS---CCCCCCSTTCSEEEEEECTT
T ss_pred CCCcEEEEEcCC---CCEEEEEeCCceEEEEeCCCcee---eEecC---CcccccCCCCCceeEEECCC
Confidence 347899999998 66467777889999987432110 00100 00000012345689999996
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.11 Score=49.55 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=60.2
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..+.+||+++.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 56677777654 4588999987754322 1111111222222 67777777764 569999998865332
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEEe
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIVV 432 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~~ 432 (548)
.+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 246 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH---------QG------RIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CCCCSSCCBSCEEEEE---------TT------EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCCCCCCccceEEEEE---------CC------EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 22212222233333 55 577777754 457889988876543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.65 Score=46.93 Aligned_cols=112 Identities=8% Similarity=0.055 Sum_probs=62.7
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEEEc--------
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIGLN-------- 196 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g~~-------- 196 (548)
.+..++|.|+|+++++.... .|++++...+....+..+.- ....+..++|+|+-..+..|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45689999999988887664 68888765433222222211 1245668999997544455665553
Q ss_pred -----CCcEEEEEeeeccccc--ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 197 -----SGDVYSVSLRQQLQDV--GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 197 -----dg~I~iwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
...|.-|++....... .+.++.. + +....| ....|+|.|++. ++++.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~--~-p~~~~H--~~~~l~f~pDG~-Lyv~~ 161 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAG--L-PSSKDH--QSGRLVIGPDQK-IYYTI 161 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEE--E-CCCSSC--CEEEEEECTTSC-EEEEE
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEc--C-CCCCCC--CCCeEeECCCCe-EEEEE
Confidence 2356666654311000 1111111 1 111123 468999999998 55543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.56 Score=45.60 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---C
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---G 242 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~ 242 (548)
+..+.-.-..+..++|.|+ +. |+++...|.|++++ ... ...+.... ...........|+|+|+ +
T Consensus 23 ~~~va~~l~~P~~ia~~pd---G~-l~V~e~~g~I~~i~-~g~-----~~~~~~~~---v~~~g~~~p~gia~~pdf~~~ 89 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPD---GG-MLIAERPGRIRLFR-EGR-----LSTYAELS---VYHRGESGLLGLALHPRFPQE 89 (352)
T ss_dssp EEEEECCCSCEEEEEECTT---SC-EEEEETTTEEEEEE-TTE-----EEEEEECC---CCCSTTCSEEEEEECTTTTTS
T ss_pred EEEEECCCCCceEEEEcCC---Ce-EEEEeCCCeEEEEE-CCC-----ccEeecce---EeecCCCCceeEEECCCCCCC
Confidence 3333333457899999998 55 67777889999998 221 11111110 00012456789999998 5
Q ss_pred CcEEEEEeC-C-----CcEEEEEcC
Q 008939 243 DGAFVVGHA-D-----GNLYVYEKS 261 (548)
Q Consensus 243 ~~~l~s~~~-d-----g~v~vwd~~ 261 (548)
. .|+++.. + +.|..|+..
T Consensus 90 g-~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 90 P-YVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp C-EEEEEEEECTTSSEEEEEEEEEC
T ss_pred C-EEEEEEecCCCCCccEEEEEEeC
Confidence 5 4444433 2 567777765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.28 Score=48.35 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred eCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC----CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccc
Q 008939 138 FDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS----NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVG 213 (548)
Q Consensus 138 ~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~ 213 (548)
...+|..+++..++.||.-++.... .-+.+... -..+..+..+|+ |.+|++.+ +.+|.|..+........
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSps---G~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTS---GDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTT---SSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCC---CCEEEEec-CCeEEEEEecCccccCc
Confidence 3457788888888999999988543 44455443 236788999998 77777764 45899998873211110
Q ss_pred -----ccee-eeeeeccCCcccCcceEEEEEecCCCc--EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCC
Q 008939 214 -----KKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDG--AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285 (548)
Q Consensus 214 -----~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (548)
.++. ......+.......+|..+.|+|-+.+ .|++-..|+.|++||+..... ... ....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~--~L~k---------- 168 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI--VLNK---------- 168 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE--EESC----------
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc--chhc----------
Confidence 1111 111111111113678999999997654 799999999999999986211 111 0100
Q ss_pred CCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE--CCCeEEEE
Q 008939 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVG--RDGYLRVF 326 (548)
Q Consensus 286 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~v~vw 326 (548)
.............|.+++|..++-.|.... ..|.|.-.
T Consensus 169 ---~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 ---PNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ---CCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ---cccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 011111222336788999999876666644 67777644
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.61 Score=45.42 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=45.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---CCcEEEEE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---GDGAFVVG 249 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s~ 249 (548)
-..+..++|.|+ +. |+++..+|.|+++|... +..+..... ..........|+|+|+ +. .|+++
T Consensus 28 l~~P~~ia~~pd---G~-l~V~e~~g~I~~~d~~G------~~~~~~~~v---~~~g~~g~~gia~~pdf~~~g-~lyv~ 93 (354)
T 3a9g_A 28 LEVPWSIAPLGG---GR-YLVTERPGRLVLISPSG------KKLVASFDV---ANVGEAGLLGLALHPEFPKKS-WVYLY 93 (354)
T ss_dssp CSCEEEEEEEET---TE-EEEEETTTEEEEECSSC------EEEEEECCC---CCSTTCSEEEEEECTTTTTSC-EEEEE
T ss_pred CCCCeEEEEcCC---Ce-EEEEeCCCEEEEEeCCC------ceEeeccce---eecCCCceeeEEeCCCCCcCC-EEEEE
Confidence 357889999998 54 77777889999886321 111111110 0012356789999998 44 44444
Q ss_pred eC----C----CcEEEEEcCC
Q 008939 250 HA----D----GNLYVYEKSK 262 (548)
Q Consensus 250 ~~----d----g~v~vwd~~~ 262 (548)
.. + ..|..|+...
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECS
T ss_pred EeccCCCCCcceEEEEEEECC
Confidence 33 3 5677777653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.1 Score=59.24 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=140.9
Q ss_pred EeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 137 NFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 137 ~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
-.+|..++|+.-.+.+++|+|+++ +..+.+..+. ..|..-.|-.. . .|+. -.+..|+-|++... ..+ .
T Consensus 72 IMnP~~~iiALrag~~lQiFnl~~--k~klks~~~~-e~VvfWkWis~---~-~l~l-VT~~aVyHW~~~~~-s~P-~-- 139 (1630)
T 1xi4_A 72 IMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMT-DDVTFWKWISL---N-TVAL-VTDNAVYHWSMEGE-SQP-V-- 139 (1630)
T ss_pred ccCCCcceEEEecCCeEEEeehHH--hhhhcccccC-CCceEEEecCC---C-eeEE-EcCCeEEEeccCCC-Ccc-H--
Confidence 446778888888888999999998 5578777764 46777677544 1 2332 33458999999641 111 1
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..|.+........|....-+++.++++++|- -.|.+.+|..+..
T Consensus 140 ---k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--------------------------- 189 (1630)
T 1xi4_A 140 ---KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------------------------- 189 (1630)
T ss_pred ---HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---------------------------
Confidence 1133333334677888888888886666654 3478888888752
Q ss_pred CeeEeeecCCCeEEEEECC---CCCEEEEEEC---CCeEEEEeCCCC---eEEE------e-eee--cCCceEEEEEccC
Q 008939 291 PIARWHICQGSINSIAFST---DGTYLATVGR---DGYLRVFDYSKE---QLIC------G-GKS--YYGALLCCAWSMD 352 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp---~g~~l~s~~~---dg~v~vwd~~~~---~~~~------~-~~~--~~~~v~~l~~spd 352 (548)
..+.+.+|.+....+.... ..++++.+.. .+.++|.++... .... . +.. -.+-..++..++.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 1222233333332222211 1122222221 267888888532 1100 0 110 1122345666776
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe
Q 008939 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV 432 (548)
Q Consensus 353 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~ 432 (548)
-..+..-+.-|.|++||++++.++..-+-....|...+.+. ...| ++.....|.|.--.+.....+.
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~-----~~~g--------~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-----ATAG--------IIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCC-----CCCc--------eEEEcCCceEEEEEEccchhhh
Confidence 66788888899999999999988766554455555444432 1123 5555577777777766665544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.62 Score=45.29 Aligned_cols=242 Identities=13% Similarity=0.060 Sum_probs=116.5
Q ss_pred CceeEEeCCCCC-EEEEecCCeEEEEEccCCCCCCeEEE---e-cCCCCceEEEecCCCCCCceEEEEEc--------CC
Q 008939 132 SMTNTNFDGKGT-YIIFNVGDAIFISDLNSQDKDPIKSI---H-FSNSNPVCHAFDQDAKDGHDLLIGLN--------SG 198 (548)
Q Consensus 132 ~v~~~~~~~~g~-~l~~~~~d~v~vwd~~~~~~~~i~~~---~-~~~~~~~~~~~~p~~~~~~~l~~g~~--------dg 198 (548)
.+..++|.|+|+ ++++.....|++++.......++..+ . .....+..++|+|+-.++..|++... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 456899999999 77776666888888543211122211 1 12345688999985211223444432 23
Q ss_pred cEEEEEeeeccc--ccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEeCC-------------CcEEEEEcCC
Q 008939 199 DVYSVSLRQQLQ--DVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGHAD-------------GNLYVYEKSK 262 (548)
Q Consensus 199 ~I~iwdl~~~~~--~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~~d-------------g~v~vwd~~~ 262 (548)
.|..|++..... ...+.+... +.. ....| ....|+|.|++. ++++-+.. |.|.-++.+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~--~p~~~~~~h--~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d- 172 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQ--MPKLSTGNH--FGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQ- 172 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEEC--SSCCBSSSC--CCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETT-
T ss_pred EEEEEEECCCCCCCCceEEEEEE--CCCCCCCcc--cCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCC-
Confidence 566666643100 000111110 110 01112 235799999996 44443221 345544443
Q ss_pred CCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEE-CCCeEEEEeCCCCe--------
Q 008939 263 DGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVG-RDGYLRVFDYSKEQ-------- 332 (548)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~-~dg~v~vwd~~~~~-------- 332 (548)
+......+.... .......|..--.....++|+| +++++++-. .++.=.|.-+..+.
T Consensus 173 -G~~p~~npf~~~------------~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (353)
T 2g8s_A 173 -GEIPDDNPFIKE------------SGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLAT 239 (353)
T ss_dssp -SCCCTTCTTTTS------------TTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred -CCCCCCCCCcCC------------CCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence 221110000000 0001122222224578899999 565444322 11111222221111
Q ss_pred -----------------------EEEeeeecCCceEEEEEcc-------CCCEEEEEeCCCeEEEEECCCceeEEe---c
Q 008939 333 -----------------------LICGGKSYYGALLCCAWSM-------DGKYILTGGEDDLVQVWSMEDRKVVAW---G 379 (548)
Q Consensus 333 -----------------------~~~~~~~~~~~v~~l~~sp-------dg~~l~sgs~dg~I~vwd~~~~~~~~~---~ 379 (548)
.+..+. +......++|.. +|.++++.-..+.|...+++.++.+.. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~ 318 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL 318 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc
Confidence 111122 223466777753 567777776778888888876544322 2
Q ss_pred cCCCCCeEEEEEec
Q 008939 380 EGHNSWVSGVAFDS 393 (548)
Q Consensus 380 ~~h~~~V~~v~~~p 393 (548)
......+..|++.|
T Consensus 319 ~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 319 TDRGQRIRDVRTGP 332 (353)
T ss_dssp GGGCCCEEEEEECT
T ss_pred cCCCCceeEEEECC
Confidence 22235788999999
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.54 Score=44.25 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=58.6
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~ 377 (548)
++++++.|+.+ ..+.+||+.+.+-... +........++. .++++++.|+.+ ..+.+||+.+.+-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56667776643 3688999887754322 221111112222 267777777754 468899998765332
Q ss_pred --eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCeEE
Q 008939 378 --WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDEIV 431 (548)
Q Consensus 378 --~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~~~ 431 (548)
.+.........+.+ ++ ++++.|+.+ ..+.+||+.+.+-.
T Consensus 190 ~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL---------ND------HIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp ECCCSSCCBSCEEEEE---------TT------EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCcccccceEEEE---------CC------EEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 22212222233333 44 577777764 45788888776543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.51 E-value=1.7 Score=49.48 Aligned_cols=172 Identities=11% Similarity=0.093 Sum_probs=99.0
Q ss_pred eEEEEeCCCCeEEEeeeec-CCceEEEE---EccC-CCEEEEEe----------CCCeEEEEECCCceeEEecc-CCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSY-YGALLCCA---WSMD-GKYILTGG----------EDDLVQVWSMEDRKVVAWGE-GHNSW 385 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~-~~~v~~l~---~spd-g~~l~sgs----------~dg~I~vwd~~~~~~~~~~~-~h~~~ 385 (548)
.|++.|..+.+.+..+.-. ...+.|++ |..+ ..+|++|. ..|.|.+|++..++.....+ ..+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3667777666665544322 22345554 3322 46888886 34789999997554322211 24678
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEe-eeecCCCCCCceecCCCCccccCCeeeecccC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVV-PLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQ 464 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~ 464 (548)
|++|+-- +| +++++. ...|++||+...+.++ ....-..+..... ......+.+|...
T Consensus 888 v~al~~~--------~g------~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l------~~~~~~I~vgD~~ 945 (1158)
T 3ei3_A 888 VYSMVEF--------NG------KLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYL------KTKGDFILVGDLM 945 (1158)
T ss_dssp EEEEEEE--------TT------EEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEE------EEETTEEEEEESS
T ss_pred CEEEeee--------CC------EEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEE------eccCCEEEEEEhh
Confidence 9988743 66 555544 4789999998765443 1111011111011 1123566777777
Q ss_pred CCCceeecCCCC-ceEEee--cCCCCeeEEEEe-CCeEEEEECCCeEEEEeCCCC
Q 008939 465 PAPSMRDVPKLS-PLVAHR--VHTEPLSGLIFT-QESVLTVCREGHIKIWMRPGV 515 (548)
Q Consensus 465 ~~~~~~d~~~~~-~~~~~~--~h~~~V~~l~fs-pd~l~t~s~Dg~I~iW~~~~~ 515 (548)
..+.+...+... .+..+. -+...++++.|- .+.++.+..+|.|.+...+..
T Consensus 946 ~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 946 RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp BCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred heEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 776665433221 222222 234567888875 457888999999999987653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.32 Score=46.36 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCEEEEEEC------CCeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeE
Q 008939 310 DGTYLATVGR------DGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVV 376 (548)
Q Consensus 310 ~g~~l~s~~~------dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~ 376 (548)
++++++.|+. -..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..+.+||+++.+-.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 5666666653 23589999987753322 11111111 2222 266777777653 35778998876432
Q ss_pred --EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------------CeEEEEECCCCeEEe
Q 008939 377 --AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------------TRLLLWDLEMDEIVV 432 (548)
Q Consensus 377 --~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------------g~i~lwd~~~~~~~~ 432 (548)
..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-..
T Consensus 236 ~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 236 VMTEFPQERSSISLVSL---------AG------SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ECCCCSSCCBSCEEEEE---------TT------EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCCCCCcccceEEEEE---------CC------EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 222222222233333 45 577777654 357788887766543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.17 Score=49.32 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=54.5
Q ss_pred CCCEEEEEEC------CCeEEEEeC--CCCeEEE--eeeecCCceEEEEEccCCCEEEEEeCC-----------------
Q 008939 310 DGTYLATVGR------DGYLRVFDY--SKEQLIC--GGKSYYGALLCCAWSMDGKYILTGGED----------------- 362 (548)
Q Consensus 310 ~g~~l~s~~~------dg~v~vwd~--~~~~~~~--~~~~~~~~v~~l~~spdg~~l~sgs~d----------------- 362 (548)
++++++.|+. ...+.+||+ .+.+-.. .+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 4556666553 345777877 4433221 121111111112233466777777632
Q ss_pred -----CeEEEEECCCce--eEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC------eEEEEECCCCe
Q 008939 363 -----DLVQVWSMEDRK--VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT------RLLLWDLEMDE 429 (548)
Q Consensus 363 -----g~I~vwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg------~i~lwd~~~~~ 429 (548)
..+.+||+++.+ .+..+......-.++.+ ++ ++++.||.++ .|.++++++++
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---------NN------SLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---------TT------EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---------CC------EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 257889988754 34444333333334444 55 6788888653 35566888877
Q ss_pred EEeeee
Q 008939 430 IVVPLR 435 (548)
Q Consensus 430 ~~~~~~ 435 (548)
.+....
T Consensus 345 ~~~~~~ 350 (357)
T 2uvk_A 345 VTVQNL 350 (357)
T ss_dssp CEEEC-
T ss_pred eEeeec
Confidence 665443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.075 Score=52.42 Aligned_cols=124 Identities=9% Similarity=0.129 Sum_probs=84.4
Q ss_pred CceeEEeCCCCCEEEEecCCeEEEEEccCCCC--------CCeE--EEecC------CCCceEEEecCCCCCCceEEEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK--------DPIK--SIHFS------NSNPVCHAFDQDAKDGHDLLIGL 195 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~--------~~i~--~~~~~------~~~~~~~~~~p~~~~~~~l~~g~ 195 (548)
.+..+..+|+|+++|..+...|.|-.+..+.. .++. ..... ...|..+.|+|-+..+..|++=.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 46679999999999999989999999984321 1122 33332 45799999999988888999999
Q ss_pred cCCcEEEEEeeeccccccccee-eeeeeccCCcccCcceEEEEEecCCCcEEEE--EeCCCcEEEEE
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV--GHADGNLYVYE 259 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s--~~~dg~v~vwd 259 (548)
.|+.|++||+......+. .+. ....|..+. ....|.+++|.+++- -|.+ ....|.|+-.-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~--~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDA--RVNDITDLEFSKDGL-TLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCS--SCCCEEEEEECTTSS-CEEEEECTTSCEEEEES
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCc--ccceEEEEEEcCCCc-EEEEEecCCCCCEEEEC
Confidence 999999999986322111 000 000111111 237889999999765 4555 44778887553
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=1 Score=42.48 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCCEEEEEECC------CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeC---------CCeEEEEECCC
Q 008939 310 DGTYLATVGRD------GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGE---------DDLVQVWSMED 372 (548)
Q Consensus 310 ~g~~l~s~~~d------g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~---------dg~I~vwd~~~ 372 (548)
++++++.|+.+ ..+.+||..+.+-... +....... +++. -++++++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 56677777655 4688999987754322 11111111 2222 36677777763 34588999988
Q ss_pred ceeEE--eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCCe
Q 008939 373 RKVVA--WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMDE 429 (548)
Q Consensus 373 ~~~~~--~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~~ 429 (548)
.+-.. .+......-..+.+ ++ ++++.|+.+ ..+.+||+.+.+
T Consensus 179 ~~W~~~~~~p~~r~~~~~~~~---------~~------~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 179 ETWTELCPMIEARKNHGLVFV---------KD------KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEEE---------TT------EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CeEEECCCccchhhcceEEEE---------CC------EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 75332 22211222223333 44 566666653 356777777654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.13 Score=48.78 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC-----eEEEEECCCcee
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD-----LVQVWSMEDRKV 375 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg-----~I~vwd~~~~~~ 375 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++ .-++++++.|+.++ .|.+||+++.+-
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 56777777654 3688999987754322 11111111 122 23677778877653 488999887653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=1.6 Score=43.29 Aligned_cols=231 Identities=10% Similarity=0.113 Sum_probs=138.5
Q ss_pred CCCEEEEe---cC-CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccce
Q 008939 141 KGTYIIFN---VG-DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKL 216 (548)
Q Consensus 141 ~g~~l~~~---~~-d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~ 216 (548)
..++++.- .+ +.|-|-|+..+. .+..... ..-+...+|. ...|+.-. ...+.++|++.. .++
T Consensus 34 SDkyicVrE~~~~~~~vvIiDl~~~~--~~~rrpi---~AdsAIMnP~---~~iiALra-g~~lQiFnle~K-----~kl 99 (494)
T 1bpo_A 34 SDKFICIREKVGEQAQVVIIDMNDPS--NPIRRPI---SADSAIMNPA---SKVIALKA-GKTLQIFNIEMK-----SKM 99 (494)
T ss_dssp ETTEEEEEECCTTCCEEEEEETTSTT--SCEEEEC---CCSEEEECSS---SSCEEEEE-TTEEEEEETTTT-----EEE
T ss_pred cCceEEEEecCCCCCeEEEEECCCCC--cceeccc---ccceeeeCCC---CcEEEEec-CCeEEEEchHHh-----hhh
Confidence 35677762 22 289999999855 3333222 2334556776 44555554 678999999872 233
Q ss_pred eeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 217 VGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 217 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
.... ....|.-=+|-.+.. |+... +..|+-|++..+ ..|++.++
T Consensus 100 ks~~--------~~e~VvfWkWis~~~--l~lVT-~taVyHWsi~~~-------------------------s~P~kvFd 143 (494)
T 1bpo_A 100 KAHT--------MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGE-------------------------SQPVKMFD 143 (494)
T ss_dssp EEEE--------CSSCCCEEEEEETTE--EEEEC-SSEEEEEESSSS-------------------------CCCEEEEE
T ss_pred ccee--------cCCCceEEEecCCCe--EEEEc-CCeeEEecccCC-------------------------CCchhhee
Confidence 2222 245677778877664 44443 358999998742 23445554
Q ss_pred ec----CCCeEEEEECCCCCEEEEEE-------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCC---CEEEEEeCC
Q 008939 297 IC----QGSINSIAFSTDGTYLATVG-------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG---KYILTGGED 362 (548)
Q Consensus 297 ~h----~~~v~~~~~sp~g~~l~s~~-------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~sgs~d 362 (548)
.| ...|.....+++.++++..+ -.|.+.+|..+.+ .-..+.+|.+....+.+.-+. ++++.+...
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence 44 35677778888888877544 2477889998754 344567776555444332211 244444443
Q ss_pred ---CeEEEEECCCc---------eeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCC
Q 008939 363 ---DLVQVWSMEDR---------KVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEM 427 (548)
Q Consensus 363 ---g~I~vwd~~~~---------~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~ 427 (548)
+.++|-++... +.+..+. .-.+--.++..++. .| .+.....-|.|.++|+.+
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k------yg-------viyviTK~G~i~lyDleT 289 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HD-------VVFLITKYGYIHLYDLET 289 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT------TT-------EEEEEETTSEEEEEETTT
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc------CC-------EEEEEecCceEEEEeccc
Confidence 78888888532 1111111 12344456666652 34 566777889999999999
Q ss_pred CeEEeeee
Q 008939 428 DEIVVPLR 435 (548)
Q Consensus 428 ~~~~~~~~ 435 (548)
+.++..-+
T Consensus 290 gt~i~~nr 297 (494)
T 1bpo_A 290 GTCIYMNR 297 (494)
T ss_dssp CCEEEEEE
T ss_pred ceeeeeec
Confidence 99886544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.066 Score=47.82 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCEEEEEECCCeEEEEeCCCCeE-------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCC
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQL-------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~ 383 (548)
..+|+....| ++++=....+.. ...-+.--..+..++|+|+|.+.++ .++.+.-.+..+.+....+.. .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c
Confidence 4466777777 666555543331 1111111246889999999987766 677777777655222111110 1
Q ss_pred CC--------eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 384 SW--------VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 384 ~~--------V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
.. -.++.|+| +| .+.++ .||.|.-|+-
T Consensus 80 t~IG~~Gw~~F~a~~fD~-------~G------~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDP-------NG------YLYAV--SKDKLYKASP 114 (236)
T ss_dssp EEEECSCGGGCSEEEECT-------TS------CEEEE--ETTEEEEESC
T ss_pred cEecccccccceEEEECC-------CC------CEEEe--CCCEEEEeCC
Confidence 11 36889999 98 45554 6798887764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.58 E-value=1.8 Score=41.77 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=79.2
Q ss_pred CCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecC---CCcEEEE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPG---GDGAFVV 248 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~---~~~~l~s 248 (548)
-..++.++|.|+ +. |++... .|.|++++.... +. ...................|+++|+ +. .|++
T Consensus 31 L~~P~~ia~~pd---G~-llVter~~G~I~~v~~~~g-----~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv 99 (347)
T 3das_A 31 LNSPWGLAPLPG---GD-LLVSSRDEATITRVDAKTG-----RK-TELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYA 99 (347)
T ss_dssp CSSEEEEEECTT---SC-EEEEETTTCEEEEECTTTC-----CE-EEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEE
T ss_pred CCCceEEEEcCC---Cc-EEEEEecCCEEEEEECCCC-----cE-eeecccCceeecCCCCceeeEeccccccCC-EEEE
Confidence 457889999998 55 555555 899998874321 11 1001111111113567899999996 33 4444
Q ss_pred E---eCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEEC-----
Q 008939 249 G---HADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGR----- 319 (548)
Q Consensus 249 ~---~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~----- 319 (548)
. ..++.|.-|.+.......... .....+ +..+. .....-..|.|.|||.++++.+.
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~---~~~~~i------------~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~ 164 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQL---GAPDTV------------FRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTG 164 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCB---CCCEEE------------EEEECCCSSCCCCCEEECTTSCEEEECBCTTCGG
T ss_pred EEecCCCCEEEEEEeCCCCcccccC---CCcEEE------------EEcCCCCCCccCccccCCCCCCEEEEECCCCCCc
Confidence 3 234455555554311000000 000000 00010 01123457999999987776542
Q ss_pred --------CCeEEEEeCCCC---------eEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 320 --------DGYLRVFDYSKE---------QLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 320 --------dg~v~vwd~~~~---------~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.|.|.-.+.... ..+.. .+|. ....++|+|+|++.++-
T Consensus 165 ~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 165 LSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp GTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEE
T ss_pred cccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEe
Confidence 245555555421 11211 2343 35678999998766553
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.24 Score=44.23 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=64.0
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
..+.+++|+|++. +.++ .+|.++-.+..+..... -+.. ...+... -| ....++.|.|+
T Consensus 41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~-W~~s-----~t~IG~~---------Gw----~~F~a~~fD~~ 98 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDN-WMGR-----AKKIGNG---------GW----NQFQFLFFDPN 98 (236)
T ss_dssp TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCC-HHHH-----CEEEECS---------CG----GGCSEEEECTT
T ss_pred ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccc-cccc-----ccEeccc---------cc----ccceEEEECCC
Confidence 3677999999887 5555 77876665543311100 0000 0000000 00 11468999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeE-------EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEE
Q 008939 311 GTYLATVGRDGYLRVFDYSKEQL-------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVW 368 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~~~-------~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vw 368 (548)
|.+.++ .||.|.-++--+... ......--..+..|.+.|+|.+.++. |+.+.-+
T Consensus 99 G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 99 GYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp SCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 987777 569998887633211 11111112467899999999877776 7775443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.28 Score=46.73 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=36.6
Q ss_pred CCCEEEEEECCC-----eEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCC--------------eEEEE
Q 008939 310 DGTYLATVGRDG-----YLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDD--------------LVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~dg-----~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg--------------~I~vw 368 (548)
++++++.|+.++ .+.+||+.+.+-... +........++. -++++++.|+.++ .|.+|
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y 273 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRY 273 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEe
Confidence 567777777654 588899987754322 111111112222 2667777777532 36778
Q ss_pred ECCCcee
Q 008939 369 SMEDRKV 375 (548)
Q Consensus 369 d~~~~~~ 375 (548)
|+++.+-
T Consensus 274 d~~~~~W 280 (315)
T 4asc_A 274 NEEEKKW 280 (315)
T ss_dssp ETTTTEE
T ss_pred cCCCChh
Confidence 8877643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.22 Score=47.37 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCce
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRK 374 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~ 374 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+.+ ..|.+||+++.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 56677777654 5689999987754322 11111111 2222 267777777754 457888887754
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.97 E-value=5 Score=43.32 Aligned_cols=219 Identities=16% Similarity=0.159 Sum_probs=117.9
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccc
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQ 210 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~ 210 (548)
..|.++..+.+|. |.+++.+.+..||..+..... ........+.++... ...|.+++.+ -|+.+|..+
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~--~~~~~~~~i~~i~~~-----~g~lWigt~~-Gl~~~~~~~--- 130 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQ--PETDFPTDVRTMALQ-----GDTLWLGALN-GLYTYQLQS--- 130 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTEEEEEETTTTEECC--CSCCCCSCEEEEEEE-----TTEEEEEETT-EEEEEETTT---
T ss_pred ceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEEC--cccCCCceEEEEEec-----CCcEEEEcCC-cceeEeCCC---
Confidence 4566777777664 445556688999987643211 000112345555432 2357778766 678888653
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
..+..... ... ......|.++....++. |..+..+| |..|+..... +....... ..
T Consensus 131 ---~~~~~~~~-~~~-~l~~~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~-----~~~~~~~~-----------~~ 186 (758)
T 3ott_A 131 ---RKLTSFDT-RRN-GLPNNTIYSIIRTKDNQ--IYVGTYNG-LCRYIPSNGK-----FEGIPLPV-----------HS 186 (758)
T ss_dssp ---CCEEEECH-HHH-CCSCSCEEEEEECTTCC--EEEEETTE-EEEEETTTTE-----EEEECCCC-----------CT
T ss_pred ---CeEEEecc-CCC-CcCCCeEEEEEEcCCCC--EEEEeCCC-HhhCccCCCc-----eEEecCCC-----------cc
Confidence 11111100 000 11245688888877776 55566554 7777765421 00000000 00
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEEC
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSM 370 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~ 370 (548)
......|.++....++..|..++. +-|..+|..+++...........|.++....+|.+. .|+.+ -+.+++.
T Consensus 187 -----~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~ 258 (758)
T 3ott_A 187 -----SQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHN 258 (758)
T ss_dssp -----TCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECC
T ss_pred -----ccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEec
Confidence 000134788888777665555654 458889988776432211122458888888888644 45544 5788888
Q ss_pred CCceeEEecc-------CCCCCeEEEEEec
Q 008939 371 EDRKVVAWGE-------GHNSWVSGVAFDS 393 (548)
Q Consensus 371 ~~~~~~~~~~-------~h~~~V~~v~~~p 393 (548)
.+.+...... -....|.++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 259 DTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp TTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 7654332211 1234688888876
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.24 Score=48.14 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=28.6
Q ss_pred eEEEEeCCCCe--EEEeeeecCCceEEEEEccCCCEEEEEeCCC------eEEEEECCCceeEEe
Q 008939 322 YLRVFDYSKEQ--LICGGKSYYGALLCCAWSMDGKYILTGGEDD------LVQVWSMEDRKVVAW 378 (548)
Q Consensus 322 ~v~vwd~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg------~I~vwd~~~~~~~~~ 378 (548)
.+.+||+.+.+ .+..+........ +...++++++.|+.++ .|.++++++++.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 47789987654 3333322111112 2334678888888653 356668887765544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.15 E-value=1 Score=42.71 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCC--------------CeEEEE
Q 008939 310 DGTYLATVGRD-----GYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGED--------------DLVQVW 368 (548)
Q Consensus 310 ~g~~l~s~~~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~d--------------g~I~vw 368 (548)
++++++.|+.+ ..+.+||+.+.+-... +....... +++ .-++++++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 56677777643 3577899887653321 21111111 222 2356777777653 357788
Q ss_pred ECCCceeE
Q 008939 369 SMEDRKVV 376 (548)
Q Consensus 369 d~~~~~~~ 376 (548)
|+++.+-.
T Consensus 284 d~~~~~W~ 291 (318)
T 2woz_A 284 EDDKKEWA 291 (318)
T ss_dssp ETTTTEEE
T ss_pred eCCCCEeh
Confidence 88776543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=94.06 E-value=3.5 Score=45.88 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=87.4
Q ss_pred eEEEEEccCCC-----CCCeEEEecCC-CCceEEEec-CCCCCCceEEEEEcCCcEEEEEeeeccccccc-ce--eeeee
Q 008939 152 AIFISDLNSQD-----KDPIKSIHFSN-SNPVCHAFD-QDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK-KL--VGAHH 221 (548)
Q Consensus 152 ~v~vwd~~~~~-----~~~i~~~~~~~-~~~~~~~~~-p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~-~~--~~~~~ 221 (548)
++.+.++.-.. ....-.++|.. -.+.|++|. +...+.-.+.+-...|.++-..++...-.... .. .-...
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~l~~~Fp~~i~p~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~ 162 (950)
T 4gq2_M 83 TLTIFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLC 162 (950)
T ss_dssp EEEEEECCCSCCSSCCCCEEEEEECSSCEEEEEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEE
T ss_pred eEEEEEeeccCCccccCCeEEEEECCCcccCCceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCcccccccccccc
Confidence 56666654211 11234555532 244688886 33333556778889999999888753110000 00 00111
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee---c
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI---C 298 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h 298 (548)
+.+..-..+.+..-.+.+|+ .++++-.||.+.-.+.+........ ..-+...+...... .-+.+..+. -
T Consensus 163 ~~p~~f~~r~p~~l~av~~~---~l~Vsl~dGgLlrl~r~~~~~~~~~--~~f~~~s~~~sl~~---l~~~~~~~~~~~~ 234 (950)
T 4gq2_M 163 YRPISFLNQKPDLMAAISTS---EICVSFFNGGLTKIILNPKDASHYE--QHIDDSSYLFSLKK---YLSLQAFKADYRS 234 (950)
T ss_dssp ECCGGGTTSCEEEEEECSSS---EEEEEETTSCEEEEEEETTTTEEEE--EEECCCCCCCBCC----------CCSSCCC
T ss_pred ccCcCccCCCceEEEEEcCC---eEEEEECCCCEEEEEecCCCCCcce--eeecCCcHHHhhhh---hcccccCCCCCCC
Confidence 11211112333333333333 5666777777655544332111000 00000000000000 000000011 1
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 299 ~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
...+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 235677888888889999999999999999999988764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.49 E-value=9.8 Score=40.97 Aligned_cols=254 Identities=12% Similarity=0.062 Sum_probs=134.5
Q ss_pred CCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe-------cCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH-------FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~-------~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..|.++..+.+|.+.+.. .+-+..++..++....+..+. .....|.++.-+.+ + .|.+|+ ++-|..|
T Consensus 324 ~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~---g-~lWigt-~~GL~~~ 397 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE---Q-QLWIAT-DGSINRY 397 (758)
T ss_dssp CBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT---S-CEEEEE-TTEEEEE
T ss_pred ceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC---C-CEEEEe-CCcHhhc
Confidence 457777778888776654 456777765543222222222 12235677766554 2 477787 5678889
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCC-CCCCcccccccceeeee
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGA-GDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~ 282 (548)
|..+. +.................|.++.-.+++ .|..|...+-|.++|..+... ....+. ....+...
T Consensus 398 ~~~~~------~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~ 466 (758)
T 3ott_A 398 DYATR------QFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKHKLMQSTSGQYI---AEQNYSVH 466 (758)
T ss_dssp ETTTT------EEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHHHHHHCCSSEEE---CSEEECGG
T ss_pred CcCCC------cEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccccccccCCccee---cccccccc
Confidence 87641 1111111111111134567888776666 577788777788888652000 000000 00000000
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeee---cCCceEEEEEccCCCEEEEE
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS---YYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~sg 359 (548)
. ......|.++...++|.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+ |
T Consensus 467 ~------------~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-g 533 (758)
T 3ott_A 467 N------------GLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-G 533 (758)
T ss_dssp G------------TCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-E
T ss_pred c------------ccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-E
Confidence 0 00124588899888888665333344588899987765432111 123577888888887554 4
Q ss_pred eCCCeEEEEECCCceeEEe-ccC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEE
Q 008939 360 GEDDLVQVWSMEDRKVVAW-GEG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~-~~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~ 431 (548)
+.+ -|..||..+.+.... ..+ ....|.++.. . +| . |..++.+| |..+|..+.+..
T Consensus 534 t~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~-~-------~g------~-lWi~t~~G-l~~~~~~~~~~~ 590 (758)
T 3ott_A 534 FHG-GVMRINPKDESQQSISFGSFSNNEILSMTC-V-------KN------S-IWVSTTNG-LWIIDRKTMDAR 590 (758)
T ss_dssp ETT-EEEEECC--CCCCBCCCCC---CCEEEEEE-E-------TT------E-EEEEESSC-EEEEETTTCCEE
T ss_pred ecC-ceEEEecCCCceEEecccCCCccceEEEEE-C-------CC------C-EEEECCCC-eEEEcCCCceeE
Confidence 554 478888766543211 111 2356777765 3 56 3 33344444 777888776543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=4.4 Score=43.29 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=98.7
Q ss_pred CCCCEEEEecC-----CeEEEEEccCCCCCCeE-E-----EecCCCCceEEEecCCCCCCceEEEEEcCC------cEEE
Q 008939 140 GKGTYIIFNVG-----DAIFISDLNSQDKDPIK-S-----IHFSNSNPVCHAFDQDAKDGHDLLIGLNSG------DVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~~-----d~v~vwd~~~~~~~~i~-~-----~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg------~I~i 202 (548)
.++.++++++. +.+.+||..+..+..+. . +........++.+..+ +..++.|+.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~---~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN---NQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT---TEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC---CEEEEEcCCCCCCCccccEEE
Confidence 45566666553 36889998875433332 1 1101112223333213 56777777543 5788
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC--cEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG--NLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
||+.+..+.....+ .. .... .+++...++. +++.|+.++ .+.+||..++. .........
T Consensus 473 yd~~t~~W~~~~~~------p~----~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~----- 533 (695)
T 2zwa_A 473 FDMKTREWSMIKSL------SH----TRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVTEEI--FKDVTPKDE----- 533 (695)
T ss_dssp EETTTTEEEECCCC------SB----CCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETTTTE--EEECCCSSG-----
T ss_pred EeCCCCcEEECCCC------CC----Cccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECCCCc--eEEccCCCC-----
Confidence 88776433322111 00 0111 1222223666 788887654 68899887521 000000000
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEEC--C-----CeEEEEeCCCCeE-----EEeeee---cCCce
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGR--D-----GYLRVFDYSKEQL-----ICGGKS---YYGAL 344 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~--d-----g~v~vwd~~~~~~-----~~~~~~---~~~~v 344 (548)
.|.. .....++.+..+ +++++.|+. + ..+.+||+.+.+- -..+.. ....-
T Consensus 534 ---------~p~~-----r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~ 599 (695)
T 2zwa_A 534 ---------FFQN-----SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG 599 (695)
T ss_dssp ---------GGGS-----CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS
T ss_pred ---------CCCc-----ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc
Confidence 0000 011223455554 667777765 2 4688999987761 111111 11111
Q ss_pred EEEEEccCCCEEEEEeC--------CCeEEEEECCCceeE
Q 008939 345 LCCAWSMDGKYILTGGE--------DDLVQVWSMEDRKVV 376 (548)
Q Consensus 345 ~~l~~spdg~~l~sgs~--------dg~I~vwd~~~~~~~ 376 (548)
.+++...++++++.|+. ...|.+||+.+.+-.
T Consensus 600 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 600 SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 23333444777888774 346899999877543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.38 E-value=9.9 Score=38.12 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCCCceEEEecCCCCCCceEEEEEcCC-cEEEEEeeecccccccceeeeeeeccCCc--ccCcceEEEEEecC---CCcE
Q 008939 172 SNSNPVCHAFDQDAKDGHDLLIGLNSG-DVYSVSLRQQLQDVGKKLVGAHHYNKDGS--VNNSRCTSVTWVPG---GDGA 245 (548)
Q Consensus 172 ~~~~~~~~~~~p~~~~~~~l~~g~~dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~p~---~~~~ 245 (548)
.-..++.++|.|+ ++ |+++...| .|++++... ++ ......+..... .....+..|+|+|+ +. .
T Consensus 25 ~l~~P~~~a~~pd---G~-l~V~e~~gg~I~~~~~~~-----g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g-~ 93 (454)
T 1cru_A 25 NLNKPHALLWGPD---NQ-IWLTERATGKILRVNPES-----GS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP-Y 93 (454)
T ss_dssp CCSSEEEEEECTT---SC-EEEEETTTCEEEEECTTT-----CC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC-E
T ss_pred CCCCceEEEEcCC---Cc-EEEEEcCCCEEEEEECCC-----Cc-EeEEecCCccccccCCCCceeEEEECCCcCcCC-E
Confidence 3457899999998 55 55566665 688886432 11 111111111100 12456789999996 44 4
Q ss_pred EEEEe
Q 008939 246 FVVGH 250 (548)
Q Consensus 246 l~s~~ 250 (548)
|.++.
T Consensus 94 lYv~~ 98 (454)
T 1cru_A 94 IYISG 98 (454)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.86 E-value=5.9 Score=45.36 Aligned_cols=218 Identities=13% Similarity=0.172 Sum_probs=110.8
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecC----CCCceEEEecCCCCCCceEE-EEE------cCC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFS----NSNPVCHAFDQDAKDGHDLL-IGL------NSG 198 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~----~~~~~~~~~~p~~~~~~~l~-~g~------~dg 198 (548)
.+.|..=.|-.+ +.|+.-+...|+-|++.. ...|++-+.-+ ...+..-.-+++ ...++ +|- -.|
T Consensus 105 ~e~VvfWkWis~-~~l~lVT~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~---~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 105 TDDVTFWKWISL-NTVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK---QKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCCceEEEecCC-CeeEEEcCCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCC---CCeEEEEeeccCCCcccc
Confidence 445555566543 455666778999999975 33565444433 345555555555 44443 332 347
Q ss_pred cEEEEEeeeccccccccee-eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLV-GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.+.+|+++....+...-.. ....+..++..++..+.|.+.- .. ..+.++|-++.........++.. ..
T Consensus 180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~--~~-------~g~kLhi~Ei~~~~~~~~~f~kk--~~ 248 (1630)
T 1xi4_A 180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR--GQ-------AGGKLHIIEVGTPPTGNQPFPKK--AV 248 (1630)
T ss_pred eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEe--cC-------CCceEEEEecCCCccCCCCCccc--cc
Confidence 7999988864332211111 0111111221122223332221 11 12689999986531111222111 10
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+.. ..-..-..++..++.-..+...+.-|.|.+||+.++.++..-+--...|...+......-++
T Consensus 249 ~~~~~~------------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 249 DVFFPP------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 316 (1630)
T ss_pred cccCCc------------ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceE
Confidence 000000 00123345677788767888889999999999999988765554444454444433323344
Q ss_pred EEeCCCeEEEEECCCcee
Q 008939 358 TGGEDDLVQVWSMEDRKV 375 (548)
Q Consensus 358 sgs~dg~I~vwd~~~~~~ 375 (548)
.-...|.|.-..++....
T Consensus 317 ~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 317 GVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEcCCceEEEEEEccchh
Confidence 444566665555554433
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.66 E-value=11 Score=35.37 Aligned_cols=174 Identities=9% Similarity=0.122 Sum_probs=92.9
Q ss_pred CCCCEEEEec---CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--------------CcEEE
Q 008939 140 GKGTYIIFNV---GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS--------------GDVYS 202 (548)
Q Consensus 140 ~~g~~l~~~~---~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d--------------g~I~i 202 (548)
.+|..|.+.. ...|+..+.+... ...+.- . .+--++++ +..|+..... ..|+.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~---~~~l~~--~--~~~~i~~~---g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN---IHKLSN--D--TAMYINAD---KNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS---CEEEEE--E--EEEEEEEC---SSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC---CEEccC--C--ceeeEEEc---CCEEEEEECCCCcccccceeccCCCeEEE
Confidence 4677777754 2377777766533 222221 1 13445666 6666666543 35666
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
.++... .+..+ .... +..|+++++ .|+-.. .++.-.||.+..++....
T Consensus 93 i~~dg~----~~~~l-----------~~~~--~~~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~~~------------ 142 (302)
T 3s25_A 93 IKRNGH----GSTVL-----------DPDP--CIYASLIGN-YIYYLHYDTQTATSLYRIRIDGEEKK------------ 142 (302)
T ss_dssp EETTSC----CCEEE-----------ECSC--EEEEEEETT-EEEEEEESSSSCEEEEEEETTSCCCE------------
T ss_pred EeCCCC----cceEe-----------ecCC--ccEEEEeCC-EEEEEeecCCCCceEEEEECCCCCeE------------
Confidence 666541 11111 1111 236788888 555544 455556665554332211
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+.. ..+ ..|+++++.|+..+. ...|.+.++..+.....+. +... ..+.|++.+|+-.
T Consensus 143 -------------~lt~--~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 143 -------------KIKN--HYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp -------------EEES--SCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEE
T ss_pred -------------EEeC--CCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEE
Confidence 1111 112 346778888887665 5678888887665433332 2222 3456999888766
Q ss_pred eCC--CeEEEEECCCce
Q 008939 360 GED--DLVQVWSMEDRK 374 (548)
Q Consensus 360 s~d--g~I~vwd~~~~~ 374 (548)
..+ ..|..-+++...
T Consensus 202 ~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EGGGTTEEEEECSSSCC
T ss_pred EcCCCcEEEEEECCCCC
Confidence 543 356666776544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.43 E-value=19 Score=36.15 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCceeEEeCCCCC--EEEEecCCeEEEEEccCCC-CCCeEEEe--cC-------CCCceEEEecCCCCCCceEEEEEcC-
Q 008939 131 TSMTNTNFDGKGT--YIIFNVGDAIFISDLNSQD-KDPIKSIH--FS-------NSNPVCHAFDQDAKDGHDLLIGLNS- 197 (548)
Q Consensus 131 ~~v~~~~~~~~g~--~l~~~~~d~v~vwd~~~~~-~~~i~~~~--~~-------~~~~~~~~~~p~~~~~~~l~~g~~d- 197 (548)
..+..++|.|+|. ++++.....|++++..... ..++..+. +. ......++|+|+-.....|++....
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 6666555589998754321 22343332 11 2467889999963323344444321
Q ss_pred ------------CcEEEEEeeec---cccc-ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 198 ------------GDVYSVSLRQQ---LQDV-GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 198 ------------g~I~iwdl~~~---~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
..|.-|.+... ..+. ..+++.. .......| .-..|+|.||+. ++++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~--~~~~~~~H--~g~~l~fgpDG~-LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLE--VAELHRKH--LGGQLLFGPDGF-LYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEE--EEESSSSS--CEEEEEECTTSC-EEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEE--cCCCCCcc--cCCcEeECCCCc-EEEEeC
Confidence 13444555421 0111 1122211 12222234 357999999998 444433
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.55 Score=45.24 Aligned_cols=118 Identities=11% Similarity=0.020 Sum_probs=74.1
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeec-CCceEEEEE--cc-CCCEEEEE-eCCCeEEEEECCCceeEEeccC----C
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSY-YGALLCCAW--SM-DGKYILTG-GEDDLVQVWSMEDRKVVAWGEG----H 382 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~l~~--sp-dg~~l~sg-s~dg~I~vwd~~~~~~~~~~~~----h 382 (548)
.+++.++.||.|.-+|.++|+.+..++.. ..++....- .+ ++..++.. ..||.|..+|.+++.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999887754 122222110 01 23333343 5899999999988854433321 1
Q ss_pred CCCeEEEEEecCCCCC---CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 383 NSWVSGVAFDSYWSQP---NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~---~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
.+++.. .=.|.--++ ..+| .+.+++.++.+...|+++|+.+..+...
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g-------~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDE-------KVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEE-ECC----------CCE-------EEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccccc-CCCceeecccccccCC-------EEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 222221 100000000 0033 7889999999999999999999988764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.48 E-value=25 Score=37.33 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=62.8
Q ss_pred CCCCEEEEEECCC--eEEEEeCCCCeEEEee-----eecCCceEEEEEccC-CCEEEEEeC--C-----CeEEEEECCCc
Q 008939 309 TDGTYLATVGRDG--YLRVFDYSKEQLICGG-----KSYYGALLCCAWSMD-GKYILTGGE--D-----DLVQVWSMEDR 373 (548)
Q Consensus 309 p~g~~l~s~~~dg--~v~vwd~~~~~~~~~~-----~~~~~~v~~l~~spd-g~~l~sgs~--d-----g~I~vwd~~~~ 373 (548)
.++++++.|+.++ .+.+||..+.+-...- ........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4778888887654 6899999877543221 111122233555555 667777765 2 45889999876
Q ss_pred e------e--EEecc-CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--------CeEEEEECCCCeEE
Q 008939 374 K------V--VAWGE-GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD--------TRLLLWDLEMDEIV 431 (548)
Q Consensus 374 ~------~--~~~~~-~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D--------g~i~lwd~~~~~~~ 431 (548)
+ . +.... ........+.+. ++ ++++.||.+ ..|.+||+.+.+-.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~--------~~------~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYIT--------PR------KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEEE--------TT------EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccccceEEEEcCCCCCCCcccceEEEeC--------CC------EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6 1 11111 111222333442 25 677777743 45888898887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=86.35 E-value=22 Score=33.34 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=43.2
Q ss_pred EEECCCCCEEEEEE--C--CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCceeEEec
Q 008939 305 IAFSTDGTYLATVG--R--DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 305 ~~~sp~g~~l~s~~--~--dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~~~ 379 (548)
..|++++++|+... . +..|...++.... ...+..+.. .+++++++.|+-.+. ...|.+-++..+.....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 36778888888776 2 3455556665332 223333322 456788888876655 678888888766544333
Q ss_pred c
Q 008939 380 E 380 (548)
Q Consensus 380 ~ 380 (548)
.
T Consensus 184 ~ 184 (302)
T 3s25_A 184 D 184 (302)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=83.94 E-value=41 Score=35.59 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCCCEEEEe-cCC--eEEEEEccCCCCCCeEEEecCCCC--ceEEEecCCCC-CCceEEEEEcCCcEEEEEeeec-cccc
Q 008939 140 GKGTYIIFN-VGD--AIFISDLNSQDKDPIKSIHFSNSN--PVCHAFDQDAK-DGHDLLIGLNSGDVYSVSLRQQ-LQDV 212 (548)
Q Consensus 140 ~~g~~l~~~-~~d--~v~vwd~~~~~~~~i~~~~~~~~~--~~~~~~~p~~~-~~~~l~~g~~dg~I~iwdl~~~-~~~~ 212 (548)
+.++++++- .+| .+.|..++.......-.++|...- +.| +|...+. +.-.+.+-..+|.++-..++.. ....
T Consensus 63 ~~~~~i~~rVl~d~~vL~l~~vd~~~~~~ti~i~FP~~i~~p~~-~f~~~e~~d~L~I~vIt~s~~lytl~L~~dff~~~ 141 (729)
T 3f7f_A 63 SNSEYICYHFSSRSTLLTFYPLSDAYHGKTINIHLPNASMNQRY-TLTIQEVEQQLLVNVILKDGSFLTLQLPLSFLFSS 141 (729)
T ss_dssp TTSCEEEEEECTTSCEEEEEEGGGTTTSCEEEEECSSCBTTGGG-GEEEEECSSEEEEEEEBSSSCEEEEEEEHHHHHSC
T ss_pred cCCcEEEEEEeCCceEEEEEEcccccCCCEEEEECCccccCCCc-eEEecCCCCEEEEEEEccCCcEEEEEEcHHHhcCc
Confidence 567777763 233 778888775443345555654321 234 3333222 1223446677888877777641 0000
Q ss_pred ccceee--eeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 213 GKKLVG--AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 213 ~~~~~~--~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
...... ...+.+..-..+.+..-++.+++ .++++-.||-+.-.+....+.. -+..-+...+...........
T Consensus 142 ~~~~~~~W~k~~~Py~F~~R~Ph~L~avs~~---~liVsL~DGGLLrL~r~~~~d~---~~~~Fnd~s~l~SL~~lf~~~ 215 (729)
T 3f7f_A 142 ANTLNGEWFHLQNPYDFTVRVPHFLFYVSPQ---FSVVFLEDGGLLGLKKVDGVHY---EPLLFNDNSYLKCLTRFFSRS 215 (729)
T ss_dssp CSCCCSCCBCCCCCSCTTTSCEEEEEECSSS---BEEEEETTSCEECCEESSSSCE---ECCCCCCCGGGGGGSTTCCTT
T ss_pred cccCchhhceeecCCcccccCCcEEEEECCC---eEEEEEcCCCEEEEEeccCCCc---ceeeecCCchhhhhHHhhcCC
Confidence 000000 00011111112344455555543 3666777776655554432111 000011111100000000000
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK 338 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~ 338 (548)
+.. .....|.++.+ +..++++.+.|..+|+||+++++++....
T Consensus 216 ~~~---~~~~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 216 SKS---DYDSVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CSS---CCCCEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCC---CcCceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 000 11234665555 36799999999999999999999887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=83.39 E-value=8.3 Score=39.43 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=62.0
Q ss_pred eEEEEeCCC----Ce-EEEeeeecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCc------e-------eEEeccCC
Q 008939 322 YLRVFDYSK----EQ-LICGGKSYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDR------K-------VVAWGEGH 382 (548)
Q Consensus 322 ~v~vwd~~~----~~-~~~~~~~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~------~-------~~~~~~~h 382 (548)
.+.|.|.+. +. .+..+. -......+..+|||+++++++. +.++.++|++.- + .+...+ -
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 366677665 22 222222 2234557889999999887765 789999999742 1 133333 3
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
.-.....+|++ +| +...|.-.|.+|.-|++...
T Consensus 377 GlGPlHt~Fd~-------~G------~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDG-------RG------NAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECS-------SS------EEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECC-------CC------ceEeeeeecceEEEEeccHH
Confidence 34556789988 88 67777779999999999753
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.63 E-value=17 Score=41.33 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.6
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee
Q 008939 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG 337 (548)
Q Consensus 301 ~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~ 337 (548)
.+.+++..++..++++.+.|+.+|||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556666778889999999999999999999988764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.97 E-value=6.5 Score=37.68 Aligned_cols=119 Identities=9% Similarity=-0.003 Sum_probs=71.0
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEeccCC-CCCeEEEEEecCCCCCCCCCCccceeEEEEEE-eCCCeEEEEECCCCeEE
Q 008939 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGH-NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV-GQDTRLLLWDLEMDEIV 431 (548)
Q Consensus 354 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~-~~Dg~i~lwd~~~~~~~ 431 (548)
.++++++.||.|.-+|.++|+.+-.++.. ..++.... .| ..+ .++ ..++.. ..||.|..+|..+|...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~--~~~-~~~------~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EP--SRL-ETY------ETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CS--CTT-TSS------EEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CC--ccc-cCC------cEEEEEECCCCEEEEEECCCCcEE
Confidence 36889999999999999999988777643 12222211 11 000 122 233333 68999999999988666
Q ss_pred eeeecCCCCC-CceecCCCCccc-------cCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 432 VPLRRGPLGG-SPTFSTGSQSAH-------WDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 432 ~~~~~~~~~~-~~~~~~~~~~~~-------~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
..+....... +.... .+.... .+..+.+|..+..+...|..+++.+..+..
T Consensus 81 ~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 5544321111 11111 111111 456777888888888888888888777753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 548 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 1e-16
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 15/140 (10%)
Query: 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV--FDYSKEQLICGGKSYYGAL 344
+ + + IN+I F +G AT D R+ +E + + +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 345 LCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404
++S G+ +L G +D VW GH++ VS + DG
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-------TDDGM- 325
Query: 405 ETVMYRFGSVGQDTRLLLWD 424
+ D+ L +W+
Sbjct: 326 -----AVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 25/140 (17%)
Query: 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289
S ++ + P G+ AF G D ++ R +
Sbjct: 226 ESDINAICFFPNGN-AFATGSDDATCRLF------------------------DLRADQE 260
Query: 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAW 349
I S++FS G L D V+D K + + C
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 350 SMDGKYILTGGEDDLVQVWS 369
+ DG + TG D +++W+
Sbjct: 321 TDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 15/155 (9%)
Query: 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG 342
+ G + S++ + D + D +++D + +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 343 ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW--VSGVAFDSYWSQPNS 400
+ + +G TG +D +++ + + + N ++ V+F +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-------SK 280
Query: 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435
G + D +WD + L
Sbjct: 281 SGR------LLLAGYDDFNCNVWDALKADRAGVLA 309
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.5 bits (106), Expect = 8e-06
Identities = 27/215 (12%), Positives = 65/215 (30%), Gaps = 17/215 (7%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
I ++ + TD L + +DG L ++D + ++ CA++ G Y+
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418
GG D++ +++++ R+ + +G + N T+ +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 419 RLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPL 478
+ V A + G + + DV +
Sbjct: 175 QQTTTFTGHTGDV---------------MSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 479 VAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWM 511
H ++ + F T + +++
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.5 bits (106), Expect = 9e-06
Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 30/288 (10%)
Query: 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290
S+ + V + +V + +G+ D +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS 350
++R S D + T D ++D Q + G ++ + +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410
D + ++G D ++W + + GH S ++ + F PN +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-----PNGN--------A 240
Query: 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT---FSTGSQ---SAHWDNVCPVGTLQ 464
F + D L+DL D+ ++ + T FS + + + D C
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC------ 294
Query: 465 PAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIW 510
++ D K H +S L T + V T + +KIW
Sbjct: 295 ---NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.4 bits (186), Expect = 2e-15
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 38/219 (17%)
Query: 220 HHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279
T+V PG G D + V+ D + + +
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW----DSETGFLVERLDSENES 249
Query: 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS 339
H + S+ S+ F+ DG + + D +++++ K+
Sbjct: 250 GTGH---------------KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 340 YY------------GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVS 387
+L A + + +YIL+G +D V W + + +GH + V
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354
Query: 388 GVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426
VA + S + F + D + +W +
Sbjct: 355 SVAV-ANGSSLGPEYN------VFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 8e-07
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 32/235 (13%)
Query: 300 GSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI------------------CGGKSYY 341
+ + FS DG YLAT G + +V+ S L+ S
Sbjct: 63 SVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 121
Query: 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401
+ +S DGK++ TG ED L+++W +E+RK+V +GH + + + + S
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181
Query: 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461
TV GQ + L + + + V SP + D V
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV---------SPGDGKYIAAGSLDRAVRVW 232
Query: 462 TLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPG 514
+ + + S + H + + ++FT++ V++ + +K+W
Sbjct: 233 DSETGFLVERLD--SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 46/174 (26%)
Query: 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHY 222
KD + S+ F+ +DG ++ G V +L+ K +
Sbjct: 254 KDSVYSVVFT-------------RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282
+ SV + + G D + ++
Sbjct: 301 EVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWD----------------------- 336
Query: 283 HPRYSKSNPIARWHICQGSINSIA------FSTDGTYLATVGRDGYLRVFDYSK 330
NP+ + S+ S+A + AT D R++ Y K
Sbjct: 337 ---KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (159), Expect = 2e-12
Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 22/208 (10%)
Query: 161 QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH 220
Q +K+ +QD G + N V + + K
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQD---GTLIASCSNDQTVRVWVVATKEC----KAELRE 183
Query: 221 HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280
H + ++ + +S + + G+ ++ S+D +
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK---------------T 228
Query: 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSY 340
+ S + + + F + G ++ + D LRV+DY ++ + ++
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288
Query: 341 YGALLCCAWSMDGKYILTGGEDDLVQVW 368
+ + Y++TG D V+VW
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.5 bits (158), Expect = 3e-12
Identities = 28/216 (12%), Positives = 69/216 (31%), Gaps = 20/216 (9%)
Query: 210 QDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVV-GHADGNLYVYEKSKDGAGDS 268
+D K+ + R P DG + D + V+ A
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW----VVATKE 176
Query: 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDY 328
+++ +S+ + + G +L + RD ++++D
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEAT--GSETKKSGKPGPFLLSGSRDKTIKMWDV 234
Query: 329 SKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG 388
S + + + + GK+IL+ +D ++VW ++++ + H +V+
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424
+ F + + D + +W+
Sbjct: 295 LDF-------HKTAP------YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 18/136 (13%), Positives = 37/136 (27%)
Query: 342 GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSD 401
+ + +++ ED ++VW E +GH V ++FD S
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 77
Query: 402 GTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVG 461
T+ + R + V + G S + + V
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 462 TLQPAPSMRDVPKLSP 477
T + + +
Sbjct: 138 TFTGHREWVRMVRPNQ 153
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 46/258 (17%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC------------ 346
+ + + F + + + D ++V+DY K + ++
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 347 ------------------------------CAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376
+ +G +I++ D +++W ++ V
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 377 AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436
GH WV V + + S +TV + + L + E +
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 437 GP--LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFT 494
T S +S G+ M DV L+ H + G++F
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 495 QES--VLTVCREGHIKIW 510
+L+ + +++W
Sbjct: 257 SGGKFILSCADDKTLRVW 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KSYYGALLCCAWSMDGKYILT 358
I+ A++ D T +A + + +++ S + + K + G + W+ D I+T
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSW 385
G D VW+++ R
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRIN 95
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 9e-05
Identities = 19/197 (9%), Positives = 41/197 (20%), Gaps = 32/197 (16%)
Query: 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293
+ W + + +++YEKS +K +
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSG------------------------NKWVQVH 45
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDG 353
G + + ++ D + T G D V+
Sbjct: 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105
Query: 354 KYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413
V S + + E N W +
Sbjct: 106 NEKKF-------AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158
Query: 414 VGQDTRLLLWDLEMDEI 430
D + ++ + E+
Sbjct: 159 GSCDFKCRIFSAYIKEV 175
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 11/147 (7%)
Query: 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS 339
+V K +A + ++ F T+ + +A G D + +F Y
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGG 282
Query: 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399
+ D H + VS ++ +
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS-LHKNSVSQISV-LSGGKAK 340
Query: 400 SDGTAETVMYRFGSVGQDTRLLLWDLE 426
+F + G D + +WD+
Sbjct: 341 C--------SQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.7 bits (88), Expect = 0.001
Identities = 15/127 (11%), Positives = 42/127 (33%), Gaps = 1/127 (0%)
Query: 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVF 326
+ ++++ + + + G ++ + FS +G+ +A V D + +
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228
Query: 327 DYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386
D K+ + S LL + + ++ G D +++ + G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 287
Query: 387 SGVAFDS 393
+
Sbjct: 288 KQSSQRG 294
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 16/154 (10%)
Query: 233 CTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292
V +P + DG + V D R + N
Sbjct: 196 IRDVALLPKEQEGYACSSIDGRVAVE---------FFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD 352
+NSI FS +L T G DG + ++ + I + + +
Sbjct: 247 DTNLAYP--VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK-NFAKFNEDSVVKIACS 303
Query: 353 GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWV 386
+ DD + + D+ + E + S +
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTI----ELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 3/88 (3%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYG---ALLCCAWSMDGKYIL 357
I+ I + L DG L V+ + + LLCC + + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 358 TGGEDDLVQVWSMEDRKVVAWGEGHNSW 385
G + +N
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEA 100
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 6e-08
Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 17/155 (10%)
Query: 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKS 339
S+ N I Q + + L + D ++++D Q + +
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG 255
Query: 340 YYG-ALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-----WGEGHNSWVSGVAFDS 393
+ +++T +D V++W ++ + + G V +
Sbjct: 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-- 313
Query: 394 YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428
++ V R G+ ++T+LL+ D ++D
Sbjct: 314 -----SNTKLVCAVGSRNGT--EETKLLVLDFDVD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 14/148 (9%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354
+ + + DG ++ + D +RV+D I + L +
Sbjct: 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDN 228
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
+++G D V++W ++ + + +G N S V + +
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN------------FVITS 276
Query: 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGS 442
D + LWDL+ E + L GGS
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGS 304
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 23/202 (11%), Positives = 50/202 (24%), Gaps = 18/202 (8%)
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS------------- 393
G I++G +D+ ++VWS K + GH V
Sbjct: 21 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 394 -YWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA 452
+ ++ + D + +
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 453 HWDNVCPVGTLQPAP----SMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIK 508
+ A + D + L + HT + L F V++ + I+
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 509 IWMRPGVAESQSSSSETVLSTS 530
+W + + L++
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSG 222
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 13/148 (8%), Positives = 34/148 (22%), Gaps = 5/148 (3%)
Query: 228 VNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP-RY 286
+ + ++ + + ++ + D + S
Sbjct: 204 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLC 346
I + Y G L +D ++ L
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTD 319
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRK 374
S D K ++ +D + + +E +
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 17/131 (12%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354
H I S+ + G +LA + + + +L ++ GK
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
Query: 355 YILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
+ ++ G+D+L+ W + + +S V + D +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDI-------SVDDK------YIVTG 324
Query: 415 GQDTRLLLWDL 425
D + ++++
Sbjct: 325 SGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 13/139 (9%)
Query: 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQ-------GSINSIAFSTDGTYLATVGRDG 321
SF V D V P + P H Q + ++ S ++ T G G
Sbjct: 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT-GGKG 72
Query: 322 YLRVFDYS-----KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376
++V+D S + + C DG ++ GGE + +W +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 377 AWGEGHNSWVSGVAFDSYW 395
E +S + A
Sbjct: 133 IKAELTSSAPACYALAISP 151
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 5e-07
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWSM 351
GS+ + +S DGT +A+ D +++++ + ++ G L W
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-- 291
Query: 352 DGKYILTGGEDDLVQVWSME 371
+ +++ + + + E
Sbjct: 292 TKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 31/302 (10%), Positives = 66/302 (21%), Gaps = 28/302 (9%)
Query: 138 FDGKGTYIIFNVGDAIFISDLNSQD--------KDPIKSIHFSNSNPVCHAFDQD--AKD 187
G I + G +++ + S S S C + D +
Sbjct: 25 NTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI 84
Query: 188 GHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFV 247
V +G
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 144
Query: 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAF 307
A ++ S + + + H + + + F
Sbjct: 145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 204
Query: 308 STDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQV 367
++ G V +G E ++ G++ WS DG I + D +++
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 368 WSMEDRKVVAWGEGHN---SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424
W++ KV G+ + S+ + + +
Sbjct: 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---------------LVSISANGFINFVN 309
Query: 425 LE 426
E
Sbjct: 310 PE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 3/103 (2%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+G+ + + G + + + S G Y +
Sbjct: 17 RGTAVVLGNTPAGDKIQ-YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 359 GGEDDLV--QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN 399
G V + + + V +++DS +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA 118
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (117), Expect = 7e-07
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 6/95 (6%)
Query: 304 SIAFSTDGTYLATVGRDGYLRVFDYSKEQL-----ICGGKSYYGALLCCAWSMDGKYILT 358
S G YL +GRDG + + D ++ I G + KY +
Sbjct: 66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125
Query: 359 GGEDD-LVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392
G + E + +
Sbjct: 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 26/139 (18%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK 354
+ + + D +R++D + + + L D K
Sbjct: 172 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNK 229
Query: 355 YILTGGEDDLVQVWSME---------DRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
I++G D ++VW + + H+ V + FD +
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---------- 279
Query: 406 TVMYRFGSVGQDTRLLLWD 424
S D +L+WD
Sbjct: 280 -----IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 348 AWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW 395
D + I++G D+ +++W + GH V + +D
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 17/167 (10%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405
D KYI++ D ++VW+ + V GH ++ + +
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL---------- 190
Query: 406 TVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ--SAHWDNVCPVGTL 463
S D + LWD+E + L + S +D V L
Sbjct: 191 -----VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 245
Query: 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIW 510
A R L H+ + L F + +++ + I IW
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 8e-04
Identities = 29/252 (11%), Positives = 66/252 (26%), Gaps = 37/252 (14%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
D + + RD ++++D + + + G++LC + + V
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN-------------------------- 399
+ + +
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 400 SDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQ--SAHWDNV 457
+ + S D + +W+ E V L G + S DN
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 199
Query: 458 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAE 517
+ D+ + L H E + + F + +++ +G IK+W +
Sbjct: 200 IRL---------WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250
Query: 518 SQSSSSETVLST 529
++ + L T
Sbjct: 251 PRAPAGTLCLRT 262
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 32/323 (9%), Positives = 79/323 (24%), Gaps = 22/323 (6%)
Query: 112 SKSISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHF 171
++I + L A++S F G + D + + +
Sbjct: 69 LQAIERDAFELCLVATTS--------FSGDLLFYRITREDET-KKVIFEKLDLLDSDMKK 119
Query: 172 SNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSV--- 228
+ + D H L+ G Y + + +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 229 ---NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPR 285
+ TSV G G +G + + E S + +
Sbjct: 180 PMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237
Query: 286 YSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALL 345
+ + + +G Q G ++ ++
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV----PTHSSQASLGEFAHSSWVM 293
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS-QPNSDGTA 404
+++ G+ + + G D ++ W ++ ++ + H + +S
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 405 ETVMYRFGSVGQDTRLLLWDLEM 427
+F G + + E
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 48/351 (13%), Positives = 98/351 (27%), Gaps = 38/351 (10%)
Query: 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSV 236
V A ++DA + + SGD+ + ++ D KK++ D + ++
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITRE--DETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 237 TWVPGGDGA----FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPI 292
W D V G Y+++ +S + P +
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL--------NWSPTLELQGTV 177
Query: 293 ARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD------YSKEQLICGGKSYYGALLC 346
S+ S G +AT +G +++ + + + ++
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 347 CAWSMDGKYILTGGEDDLVQV---WSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403
+S G + + + + E + + + S +
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTL 463
S G D +L WD++ E + L D G
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLN----MHCDDIEIEEDILAVD---EHGDS 349
Query: 464 QPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPG 514
P + DV L + + ES+ VC + I+ + G
Sbjct: 350 LAEPGVFDVKFLKKGWRSGMGAD-------LNESLCCVCLDRSIRWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 14/142 (9%), Positives = 34/142 (23%), Gaps = 17/142 (11%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-------------GGKSYYGALL 345
I S++ ++ + DGYL+V+D G
Sbjct: 14 DADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF--DSYWSQPNSDGT 403
+ + + T + + + + S+W+
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 404 AETVMYRFGSVGQDTRLLLWDL 425
+ +R + +W
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKF 153
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 347 CAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 391
+ Y++TG +D +++V+ ++K + GH+ V + +
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
+ Y+ T D +RV+D ++ + + G + ++ G +++G D V
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGSTDRTV 76
Query: 366 QVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
+VW ++ EGHNS V + Y + + +D L +W L
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-----------NIKYIVTGSRDNTLHVWKL 125
Query: 426 EMDEIV 431
+ V
Sbjct: 126 PKESSV 131
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 15/88 (17%)
Query: 340 YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV-AWGEGHNSWVSGVAFDSYWSQP 398
++ L IL G ++ ++++ K+V A + V F
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--- 336
Query: 399 NSDGTAETVMYRFGSVGQDTRLLLWDLE 426
+V +D + L L+
Sbjct: 337 -----------LVAAVEKDGQSFLEILD 353
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 19/183 (10%), Positives = 39/183 (21%), Gaps = 17/183 (9%)
Query: 305 IAFSTDGTYLATVGRDGYLRVFDYSKEQL-----ICGGKSYYGALLCCAWSMDGKYIL-T 358
A Y+ L V D + + + + A + D +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA----MMAPDNRTAYVL 57
Query: 359 GGEDDLVQVWSMEDRKVVAW------GEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412
+ ++ K + A S + T
Sbjct: 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDH 116
Query: 413 SVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDV 472
V + RL ++ P+R P+ + P + +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176
Query: 473 PKL 475
L
Sbjct: 177 VAL 179
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 31/269 (11%), Positives = 67/269 (24%), Gaps = 19/269 (7%)
Query: 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGH 189
SM + G + V ++D ++ ++
Sbjct: 88 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV 147
Query: 190 DLLIGLNSGDVYSVSLRQQLQDV--GKKLVGAHHYNKDGSVNNSRCTSVTWV--PGGDGA 245
L+ + G +Y DV GK V N + ++ W
Sbjct: 148 YLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207
Query: 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305
++ + + + +T + + +
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ----------EFADLTELYFTG 257
Query: 306 AFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365
S L +D + +LI + C A+ G + GG + +
Sbjct: 258 LRSPKDPNQIYGV-LNRLAKYDLKQRKLI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315
Query: 366 QVWSMEDRKVVAW---GEGHNSWVSGVAF 391
V++ + + V G S + F
Sbjct: 316 AVFNPDTLEKVKNIKLPGGDMSTTTPQVF 344
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 30/285 (10%), Positives = 68/285 (23%), Gaps = 17/285 (5%)
Query: 234 TSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIA 293
+ P A+V+ + G++Y D S +S
Sbjct: 43 GTAMMAPDNRTAYVLNNHYGDIYGI--------DLDTCKNTFHANLSSVPGEVGRSMYSF 94
Query: 294 RWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSM 351
+ + T V + L VF + + +
Sbjct: 95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154
Query: 352 DGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411
DG + G + + V + + + + S +W + +
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 412 GSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRD 471
DL + V L+ G F+ ++ P Q +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGVLNR 273
Query: 472 VPKLSP----LVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIW 510
+ K L+ + F ++ + + ++
Sbjct: 274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 30/212 (14%), Positives = 53/212 (25%), Gaps = 8/212 (3%)
Query: 301 SINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL-----ICGGKSYYGALLCCAWSMDGKY 355
+++ S G YL +GRD + + D ++ I G + +Y
Sbjct: 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122
Query: 356 -ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414
I + E + V + + E F
Sbjct: 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVN 180
Query: 415 GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPK 474
++T +L D + + S + + + A +
Sbjct: 181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR 240
Query: 475 LSPLVAHRVHTEPLSGLIFTQESVLTVCREGH 506
LS LV P G F V H
Sbjct: 241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 46/340 (13%), Positives = 86/340 (25%), Gaps = 44/340 (12%)
Query: 114 SISGSSRIGSLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFIS--DLNSQDKDPIKSIHF 171
SIS I ++ + + T+ ++D I + G + F+ D P+
Sbjct: 2 SISLKEIIPPQPSTQRNFT-THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60
Query: 172 SNSNPV-CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNN 230
S+ V F K L G SG V + + + V
Sbjct: 61 HGSSVVTTVKFSPI-KGSQYLCSGDESGKVI----VWGWTFDKESNSVEVNVKSEFQVLA 115
Query: 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290
+ ++W G VVG N V+ G + +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 291 PIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQL----------------- 333
F + + ++R ++S +
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 334 --------ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW 385
I + + +D + T G D ++VW + K V
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425
+ + R S+ D L ++L
Sbjct: 296 LGNQQVGVVATGNG----------RIISLSLDGTLNFYEL 325
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 1e-05
Identities = 15/97 (15%), Positives = 33/97 (34%)
Query: 299 QGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILT 358
+I +++ S DG L + +G++ +D S + ++ + + T
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71
Query: 359 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYW 395
DD ++V V + N S +
Sbjct: 72 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.6 bits (90), Expect = 6e-04
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 295 WHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS--KEQLICGGKSYYGALLCCAWSMD 352
W + +++S D LAT D + V++ + + I ++ + + ++
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Query: 353 GKYILTGGEDDLVQVWS 369
I++ G+D ++ W+
Sbjct: 280 ETTIVSAGQDSNIKFWN 296
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 5e-05
Identities = 10/95 (10%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK-EQLI 334
Q++ +++ I + + +AT D + ++ + ++I
Sbjct: 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 251
Query: 335 CGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369
++ + W +++ G D ++ W+
Sbjct: 252 KALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 346 CCAWSMDGKYILTGGEDDLVQVWSMED-RKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404
++ + TG D + ++S++ K++ H V+ + + +
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-------ETPS-- 270
Query: 405 ETVMYRFGSVGQDTRLLLWD 424
S G D + W+
Sbjct: 271 -----TLVSSGADACIKRWN 285
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 15/119 (12%)
Query: 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVG----------RDGYLRVFDYSKEQLICG 336
+ + + G + + + L FD K I
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASI-K 274
Query: 337 GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA----WGEGHNSWVSGVAF 391
+ S DG + GG + + E + G S S F
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLF 333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 11/119 (9%), Positives = 26/119 (21%), Gaps = 3/119 (2%)
Query: 313 YLATVGRDGYLRVFDYSKEQLI--CGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWS 369
Y+ R L V D K + + + G+ T + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 370 MEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428
+ + + + + P+ A + D
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 548 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.71 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.64 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.33 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.29 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.19 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.15 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.05 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.02 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.98 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.97 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.97 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.94 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.85 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.3 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.28 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.92 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.79 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.89 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.77 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.61 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.58 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.37 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.28 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.19 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.1 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.03 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.83 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.38 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.07 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.5 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.08 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.97 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.34 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.14 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.16 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.21 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.31 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 87.97 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6e-39 Score=313.87 Aligned_cols=286 Identities=13% Similarity=0.178 Sum_probs=241.2
Q ss_pred CCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
+.+.+..++++|+|+.++++.++.+.+||+++.. ....+..|...++|++|+|+ +++|++|+.||.|++||+...
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~--~~~~~~~H~~~v~~~~~sp~---g~~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPS---GYYCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSS--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEESSST
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCc--eeEEEcCCCCCEEEEEEeCC---CCeEeccccCceEeeeeeecc
Confidence 3445668899999999999988899999998744 77778889999999999998 889999999999999999862
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC--CCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA--DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
.. ...... ..|...|.+++|+|++. +|++++. +..++||+++..
T Consensus 91 ~~----~~~~~~------~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~----------------------- 136 (311)
T d1nr0a1 91 TH----ILKTTI------PVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTG----------------------- 136 (311)
T ss_dssp TC----CEEEEE------ECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTC-----------------------
T ss_pred cc----cccccc------ccccCcccccccccccc-ccccccccccccccccccccc-----------------------
Confidence 11 111111 13788999999999999 7777765 456999999862
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLV 365 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I 365 (548)
.++..+..|...|++++|+|++++ |++++.|+.|++||+++++....+..|...|.++.|+|++++|++++.|+.|
T Consensus 137 ---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v 213 (311)
T d1nr0a1 137 ---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213 (311)
T ss_dssp ---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccc
Confidence 334556678899999999999875 7889999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceeEEecc-------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 366 QVWSMEDRKVVAWGE-------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 366 ~vwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
++||+++++.+..++ +|...|++++|+| +| .+|++++.|+.|+|||+++++++..+..+.
T Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-------~~------~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~ 280 (311)
T d1nr0a1 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-------DG------TKIASASADKTIKIWNVATLKVEKTIPVGT 280 (311)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred cccccccccccccccccccccccccccccccccCC-------CC------CEEEEEeCCCeEEEEECCCCcEEEEEECCC
Confidence 999999987776653 6889999999999 88 799999999999999999999887765410
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRP 513 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~ 513 (548)
.+...+.++.|+++.|++++.||.|++||++
T Consensus 281 --------------------------------------------~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 281 --------------------------------------------RIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp --------------------------------------------SGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred --------------------------------------------CccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 1123466788888999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-38 Score=308.94 Aligned_cols=287 Identities=14% Similarity=0.225 Sum_probs=242.6
Q ss_pred ccccCCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCC-CCeEEEe--cCCCCceEEEecCCCCCCceEEEEEcCCc
Q 008939 123 SLGASSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDK-DPIKSIH--FSNSNPVCHAFDQDAKDGHDLLIGLNSGD 199 (548)
Q Consensus 123 ~~~~~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~-~~i~~~~--~~~~~~~~~~~~p~~~~~~~l~~g~~dg~ 199 (548)
.+....|...|.+++|+|+|++|++++++.|+|||+..... ..+.... .|...|.+++|+|+ +.+|++|+.||.
T Consensus 44 ~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d---g~~l~s~~~dg~ 120 (337)
T d1gxra_ 44 QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD---GCTLIVGGEAST 120 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT---SSEEEEEESSSE
T ss_pred EEEECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC---CCEEEEeecccc
Confidence 45555899999999999999999998866999999986542 2344333 36678999999998 889999999999
Q ss_pred EEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccccccee
Q 008939 200 VYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQF 279 (548)
Q Consensus 200 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 279 (548)
|++||+.... .+..... ..|...+.+++|+|++. ++++++.|+.|++|++...
T Consensus 121 i~iwd~~~~~----~~~~~~~------~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~---------------- 173 (337)
T d1gxra_ 121 LSIWDLAAPT----PRIKAEL------TSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQ---------------- 173 (337)
T ss_dssp EEEEECCCC------EEEEEE------ECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT----------------
T ss_pred cccccccccc----ccccccc------ccccccccccccccccc-ccccccccccccccccccc----------------
Confidence 9999987521 1111111 13678899999999998 9999999999999999862
Q ss_pred eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 280 SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
........|...|.+++|+++++++++++.|+.|++||+++++.+..+. |...|.+++|+|++++|+++
T Consensus 174 ----------~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~ 242 (337)
T d1gxra_ 174 ----------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp ----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred ----------cccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEccccccccee
Confidence 3355566778999999999999999999999999999999999887664 78899999999999999999
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.|+.|++||+++++... ...|...|.+++|+| +| .+|++++.|+.|++||+.+++++..+
T Consensus 243 ~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~-------~g------~~l~s~s~Dg~i~iwd~~~~~~~~~~----- 303 (337)
T d1gxra_ 243 MESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAY-------CG------KWFVSTGKDNLLNAWRTPYGASIFQS----- 303 (337)
T ss_dssp ETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECT-------TS------SEEEEEETTSEEEEEETTTCCEEEEE-----
T ss_pred cccccccccccccccccc-ccccccccceEEECC-------CC------CEEEEEeCCCeEEEEECCCCCEEEEc-----
Confidence 999999999999887764 456999999999999 98 79999999999999999988766432
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMR 512 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~ 512 (548)
.|...|++++|+|+ .|++++.||+|+|||+
T Consensus 304 -------------------------------------------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 -------------------------------------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 36788999999997 4999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.5e-37 Score=298.54 Aligned_cols=283 Identities=19% Similarity=0.309 Sum_probs=251.3
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|.++|++++|+|++++|++++.| +|+|||++++. .+..+..|...+.+++|+|+ +.+++.+..++.+.+|
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h~~~V~~~~~~~~---~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHS---GKLLASCSADMTIKLW 86 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTT---SSEEEEEETTSCCCEE
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEEEeCCCCcEEEEeeecc---cccccccccccccccc
Confidence 456899999999999999999999888 99999999854 88999999999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+.... +.... ...|...+.++.|+|++. .+++++.|+.+++||++.
T Consensus 87 ~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~--------------------- 132 (317)
T d1vyhc1 87 DFQGF-----ECIRT-------MHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT--------------------- 132 (317)
T ss_dssp ETTSS-----CEEEC-------CCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT---------------------
T ss_pred ccccc-----ccccc-------cccccccceeeeccCCCc-eEEeeccCcceeEeeccc---------------------
Confidence 87652 11111 123788899999999999 899999999999999986
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccC-----------
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMD----------- 352 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spd----------- 352 (548)
...+..+..|...+.+++|+|++++|++++.|+.|++|++.+++.+..+..|...+.++.|+|+
T Consensus 133 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 207 (317)
T d1vyhc1 133 -----GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207 (317)
T ss_dssp -----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred -----ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecccc
Confidence 2456677888899999999999999999999999999999999999999999999999999885
Q ss_pred ---------CCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEE
Q 008939 353 ---------GKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLW 423 (548)
Q Consensus 353 ---------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lw 423 (548)
+.++++++.|+.|++||+++++++..+.+|...|.+++|+| ++ .+|++++.|+.|++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~------~~l~s~~~dg~i~iw 274 (317)
T d1vyhc1 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-------GG------KFILSCADDKTLRVW 274 (317)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-------SS------SCEEEEETTTEEEEE
T ss_pred ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-------CC------CEEEEEECCCeEEEE
Confidence 34789999999999999999999999999999999999999 88 689999999999999
Q ss_pred ECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEE
Q 008939 424 DLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTV 501 (548)
Q Consensus 424 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~ 501 (548)
|+++++++. .+.+|.++|++|+|+|+ .|++|
T Consensus 275 d~~~~~~~~-----------------------------------------------~~~~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 275 DYKNKRCMK-----------------------------------------------TLNAHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp CCTTSCCCE-----------------------------------------------EEECCSSCEEEEEECSSSSCEEEE
T ss_pred ECCCCcEEE-----------------------------------------------EEcCCCCCEEEEEEcCCCCEEEEE
Confidence 998766543 44568999999999997 49999
Q ss_pred ECCCeEEEEe
Q 008939 502 CREGHIKIWM 511 (548)
Q Consensus 502 s~Dg~I~iW~ 511 (548)
+.||+|+|||
T Consensus 308 s~Dg~i~iWd 317 (317)
T d1vyhc1 308 SVDQTVKVWE 317 (317)
T ss_dssp ETTSEEEEEC
T ss_pred eCCCeEEEeC
Confidence 9999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-36 Score=305.06 Aligned_cols=329 Identities=14% Similarity=0.120 Sum_probs=237.1
Q ss_pred CCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.++|++++|+|+|++|++++.+ .|+|||++.++...+..+..|...|.+++|+|+ +++|++|+.|+.|++||+...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~---~~~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC---CCEEEEEECCCeEEEEeeccc
Confidence 4678999999999999998887 899999987554567778889999999999998 889999999999999999752
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
. .+..... ..|...|++++|+|+++ .|++++.|+.|++|+++......
T Consensus 84 ~---~~~~~~~-------~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~--------------------- 131 (371)
T d1k8kc_ 84 T---WKPTLVI-------LRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWW--------------------- 131 (371)
T ss_dssp E---EEEEEEC-------CCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEE---------------------
T ss_pred c---ccccccc-------ccccccccccccccccc-cceeecccCcceeeeeecccccc---------------------
Confidence 1 1111111 12678999999999998 99999999999999987632100
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCC------------------eEEEeeeecCCceEEEEEc
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKE------------------QLICGGKSYYGALLCCAWS 350 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~------------------~~~~~~~~~~~~v~~l~~s 350 (548)
........|...|.+++|+|++++|++++.|+.|++||+... +++.....|...|.+++|+
T Consensus 132 -~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 210 (371)
T d1k8kc_ 132 -VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210 (371)
T ss_dssp -EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred -cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence 012223456789999999999999999999999999998542 3456667788999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+| |+ .+|+ ++.|+.+++|+......
T Consensus 211 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-------d~------~~la-~g~d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-------ES------SLVA-AGHDCFPVLFTYDSAAG 276 (371)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-------TT------EEEE-EETTSSCEEEEEETTTT
T ss_pred cccccccccccCCcceEEeeecccceeeeecccccceeeeecC-------CC------CEEE-EEcCCceEEEEeeCCCc
Confidence 9999999999999999999999999999999999999999999 98 5555 56688777766554332
Q ss_pred EeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC------eEEEEECC
Q 008939 431 VVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE------SVLTVCRE 504 (548)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd------~l~t~s~D 504 (548)
...+......... ........ ... ....+........ ..........|.+.|++|++.+. .|+|++.|
T Consensus 277 ~~~~~~~~~~~~~-~~~~~~~~--~~~--~~~~~~~~~~~~~-~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D 350 (371)
T d1k8kc_ 277 KLSFGGRLDVPKQ-SSQRGLTA--RER--FQNLDKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350 (371)
T ss_dssp EEEECCCCCCC---------CH--HHH--HHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT
T ss_pred eEEEeeeecCccc-cccccccc--eee--EecccceeEEecc-ccccceecccccCCEEEEEEeCCCCcceEEEEEEcCC
Confidence 2222211000000 00000000 000 0000000000000 00011112359999999999873 38899999
Q ss_pred CeEEEEeCCC
Q 008939 505 GHIKIWMRPG 514 (548)
Q Consensus 505 g~I~iW~~~~ 514 (548)
|.|+|||+..
T Consensus 351 g~v~iW~~~~ 360 (371)
T d1k8kc_ 351 GGMSIWDVRS 360 (371)
T ss_dssp SEEEEEEHHH
T ss_pred CeEEEEeCCc
Confidence 9999999854
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-36 Score=295.62 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=234.7
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
.+..+ .|...|.|++|+|+ +.+|++|+ ||.|+|||+..... ....... ....|...|++++|+|+++
T Consensus 44 ~~~~~-~H~~~V~~v~fs~~---g~~latg~-dg~V~iWd~~~~~~---~~~~~~~----~~~~h~~~I~~v~~s~dg~- 110 (337)
T d1gxra_ 44 QINTL-NHGEVVCAVTISNP---TRHVYTGG-KGCVKVWDISHPGN---KSPVSQL----DCLNRDNYIRSCKLLPDGC- 110 (337)
T ss_dssp EEEEE-CCSSCCCEEEECSS---SSEEEEEC-BSEEEEEETTSTTC---CSCSEEE----ECSCTTSBEEEEEECTTSS-
T ss_pred EEEEC-CCCCcEEEEEECCC---CCEEEEEE-CCEEEEEEccCCcc---cceeEEe----eecCCCCcEEEEEEcCCCC-
Confidence 34444 37889999999998 88999987 89999999976211 1111111 1123788999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++++.||.|++||+.... ......+..|...+.+++|+|++.++++++.|+.|+
T Consensus 111 ~l~s~~~dg~i~iwd~~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 166 (337)
T d1gxra_ 111 TLIVGGEASTLSIWDLAAPT------------------------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEeecccccccccccccc------------------------cccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987521 122455677889999999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
+||+.++++......|...|.+++|+++++.+++++.|+.|++||+++++.+..+. |...|.+++|+| ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~-------~~-- 236 (337)
T d1gxra_ 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-------TG-- 236 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-------TS--
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcc-------cc--
Confidence 99999999998889999999999999999999999999999999999999888776 899999999999 88
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
.+|++++.|+.|++||++.++... ...|
T Consensus 237 ----~~l~~~~~d~~i~i~d~~~~~~~~------------------------------------------------~~~~ 264 (337)
T d1gxra_ 237 ----EWLAVGMESSNVEVLHVNKPDKYQ------------------------------------------------LHLH 264 (337)
T ss_dssp ----SEEEEEETTSCEEEEETTSSCEEE------------------------------------------------ECCC
T ss_pred ----cccceecccccccccccccccccc------------------------------------------------cccc
Confidence 689999999999999998776432 2357
Q ss_pred CCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc-cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 485 TEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE-SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 485 ~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~-~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
...|++++|+|+ .|++++.||.|++||++..+. ....|...|. +|+||+++|+++...|.+
T Consensus 265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 889999999997 499999999999999987663 3445666776 789999999999877654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-35 Score=298.21 Aligned_cols=282 Identities=18% Similarity=0.288 Sum_probs=226.2
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEe------------------cCCCCceEEEecCCCCCC
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIH------------------FSNSNPVCHAFDQDAKDG 188 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~------------------~~~~~~~~~~~~p~~~~~ 188 (548)
-+|.+.|++++|+|+|++|++++++.|+|||+.++. .+..+. .+...|.+++|+|+ +
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---~ 133 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---G 133 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTT---S
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccc--eEeeecccccccccccccccccccCCCCCEEEEEECCC---C
Confidence 369999999999999999999886699999998754 443332 24456899999998 8
Q ss_pred ceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCC
Q 008939 189 HDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDS 268 (548)
Q Consensus 189 ~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~ 268 (548)
.+|++|+.||.|++||... .+.+... ..|...|.++.|++++. .+++++.++.+++||....
T Consensus 134 ~~l~s~~~dg~v~i~~~~~-----~~~~~~~-------~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~----- 195 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIEN-----RKIVMIL-------QGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTG----- 195 (388)
T ss_dssp SEEEEEETTSCEEEEETTT-----TEEEEEE-------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT-----
T ss_pred Ccceecccccccccccccc-----ccccccc-------ccccccccccccccccc-cccccccceeeeeeecccc-----
Confidence 8999999999999999875 2222111 13789999999999998 8999999999999998752
Q ss_pred CcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEee-------eec
Q 008939 269 SFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICGG-------KSY 340 (548)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~~-------~~~ 340 (548)
....... +.....++.|++ ++++|++++.|+.|++||++++..+..+ .+|
T Consensus 196 ---------------------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h 253 (388)
T d1erja_ 196 ---------------------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 253 (388)
T ss_dssp ---------------------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred ---------------------ccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence 1122222 234455556655 8899999999999999999988776554 357
Q ss_pred CCceEEEEEccCCCEEEEEeCCCeEEEEECCCce------------eEEeccCCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 341 YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK------------VVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 341 ~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~------------~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
...|.+++|+|++++|++++.|+.|++||+++.+ .......|...|.+++|+| +|
T Consensus 254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~------ 320 (388)
T d1erja_ 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-------ND------ 320 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-------GG------
T ss_pred CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-------CC------
Confidence 8899999999999999999999999999997643 3344557899999999999 88
Q ss_pred EEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe
Q 008939 409 YRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL 488 (548)
Q Consensus 409 ~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V 488 (548)
.+|++++.|+.|++||+++++++..+ ++|.+.|
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l-----------------------------------------------~~H~~~V 353 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLML-----------------------------------------------QGHRNSV 353 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------------------ECCSSCE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEE-----------------------------------------------eCCCCCE
Confidence 79999999999999999988766543 4688889
Q ss_pred eEEEEe------CC--eEEEEECCCeEEEEeCC
Q 008939 489 SGLIFT------QE--SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 489 ~~l~fs------pd--~l~t~s~Dg~I~iW~~~ 513 (548)
+++++. |+ .|+||+.||+|+||+++
T Consensus 354 ~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 998864 44 39999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.1e-35 Score=285.20 Aligned_cols=278 Identities=16% Similarity=0.255 Sum_probs=228.5
Q ss_pred CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADG 253 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg 253 (548)
..+.+++++|+ +..|+.+ .++.|.+||+++. ...... ..|...|++++|+|+++ +|++|+.||
T Consensus 18 ~~~~~~a~~~~---g~~l~~~-~~~~v~i~~~~~~-----~~~~~~-------~~H~~~v~~~~~sp~g~-~latg~~dg 80 (311)
T d1nr0a1 18 GTAVVLGNTPA---GDKIQYC-NGTSVYTVPVGSL-----TDTEIY-------TEHSHQTTVAKTSPSGY-YCASGDVHG 80 (311)
T ss_dssp TCCCCCEECTT---SSEEEEE-ETTEEEEEETTCS-----SCCEEE-------CCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred CCeEEEEEcCC---CCEEEEE-eCCEEEEEECCCC-----ceeEEE-------cCCCCCEEEEEEeCCCC-eEeccccCc
Confidence 35678899998 7778777 4667999999761 111111 13889999999999998 999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC--CCeEEEEeCCCC
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR--DGYLRVFDYSKE 331 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~--dg~v~vwd~~~~ 331 (548)
+|+|||+.... ......+..|...|.+++|+|++++|++++. +..++||+++++
T Consensus 81 ~i~iwd~~~~~------------------------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~ 136 (311)
T d1nr0a1 81 NVRIWDTTQTT------------------------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136 (311)
T ss_dssp EEEEEESSSTT------------------------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred eEeeeeeeccc------------------------cccccccccccCccccccccccccccccccccccccccccccccc
Confidence 99999998632 1223456778899999999999999999986 456999999999
Q ss_pred eEEEeeeecCCceEEEEEccCCCE-EEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEE
Q 008939 332 QLICGGKSYYGALLCCAWSMDGKY-ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYR 410 (548)
Q Consensus 332 ~~~~~~~~~~~~v~~l~~spdg~~-l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~ 410 (548)
+.+..+.+|...|.+++|+|++++ |++|+.|+.|++||+++++....+..|...|+++.|+| ++ .+
T Consensus 137 ~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-------~~------~~ 203 (311)
T d1nr0a1 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-------DG------SL 203 (311)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-------TS------SE
T ss_pred cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc-------cc------cc
Confidence 999899999999999999999985 78899999999999999999999999999999999999 88 78
Q ss_pred EEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 411 FGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 411 l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
|++++.|+.|++||+.+++.+..++.. .....+|...|++
T Consensus 204 l~~~~~d~~v~~~d~~~~~~~~~~~~~----------------------------------------~~~~~~h~~~V~~ 243 (311)
T d1nr0a1 204 FASTGGDGTIVLYNGVDGTKTGVFEDD----------------------------------------SLKNVAHSGSVFG 243 (311)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCT----------------------------------------TSSSCSSSSCEEE
T ss_pred ccccccccccccccccccccccccccc----------------------------------------ccccccccccccc
Confidence 999999999999999998877665431 0122468999999
Q ss_pred EEEeCC--eEEEEECCCeEEEEeCCCCCcccc--CC---CCcEEEecCCCCceEeeeccccc
Q 008939 491 LIFTQE--SVLTVCREGHIKIWMRPGVAESQS--SS---SETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 491 l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~--~~---~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
++|+|+ .|++++.||.|+|||+.+.+.... .+ ...+.++.++++.|++++..|.+
T Consensus 244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEE
Confidence 999996 499999999999999987763221 12 23456788888899999887764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.7e-34 Score=279.08 Aligned_cols=286 Identities=12% Similarity=0.155 Sum_probs=239.7
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.||.+.|.+++|+|++.+|++++.| .|+|||+.++. .+..+..+...+.+++|+|+ +.++++|+.|+.|.+|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--EEEEEECSCSCEEEEEECTT---SSEEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce--eEEEEecccccEEeeEeecc---ceeeeeecccceeecc
Confidence 356899999999999999999999988 99999999854 88889989999999999998 8899999999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+...... ........ ..|........+..+. .++....|.....+.....
T Consensus 125 ~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------------- 174 (340)
T d1tbga_ 125 NLKTREG--NVRVSREL------AGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETG-------------------- 174 (340)
T ss_dssp ESSSSCS--CCCEEEEE------CCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTT--------------------
T ss_pred ccccccc--ccccceec------cccccccccccccccc--ccccccccccccccccccc--------------------
Confidence 9775211 11111111 1245555555555544 6888888999998887652
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
........+...+....+.+...+++++..|+.|++||+++++++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 175 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 175 ------QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ------cccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 22333444567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCceeEEec--cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 364 LVQVWSMEDRKVVAWG--EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
.|++||++..+.+..+ ..|...|.+++|+| ++ .+|++++.|+.|++||+.+++++..
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-------~~------~~l~~g~~dg~i~iwd~~~~~~~~~-------- 307 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSK-------SG------RLLLAGYDDFNCNVWDALKADRAGV-------- 307 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECS-------SS------CEEEEEETTSCEEEEETTTCCEEEE--------
T ss_pred eEEEEeecccccccccccccccCceEEEEECC-------CC------CEEEEEECCCEEEEEECCCCcEEEE--------
Confidence 9999999998877655 35778899999999 88 7999999999999999998776543
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEe
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWM 511 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~ 511 (548)
+.+|..+|++|+|+|+ .|+||+.||.|+|||
T Consensus 308 ---------------------------------------~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 308 ---------------------------------------LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------------------------EcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 3468999999999997 499999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.6e-34 Score=279.71 Aligned_cols=342 Identities=15% Similarity=0.156 Sum_probs=258.4
Q ss_pred ccCCCCCCc-eeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEE
Q 008939 125 GASSSSTSM-TNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYS 202 (548)
Q Consensus 125 ~~~~h~~~v-~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~i 202 (548)
.+.||...| ++++| ++++|++++.| +|+|||+.+++ .+..+..|...|.+++|+|+ .+|++|+.||.|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~l~~s~~----~~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG----GILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE--EEEEEECCSSCEEEEEEETT----TEEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc--EEEEEECCCCCEEEEEEcCC----CEEEEEeccccccc
Confidence 356788876 55555 57899999888 99999999854 89999999999999999985 37999999999999
Q ss_pred EEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeee
Q 008939 203 VSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVA 282 (548)
Q Consensus 203 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 282 (548)
|++... +.... . ....+...+..+.+.+++. .+++++.|+.|++||+............. ......
T Consensus 79 w~~~~~-----~~~~~-~----~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~~ 144 (355)
T d1nexb2 79 WDIKKG-----CCTHV-F----EGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEH---DYPLVF 144 (355)
T ss_dssp EETTTT-----EEEEE-E----CCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC--------------CCCEEE
T ss_pred cccccc-----ccccc-c----ccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccc---eeccce
Confidence 998762 11111 1 1111345566777888887 89999999999999998633221111000 000011
Q ss_pred cCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 283 HPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 283 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.........+.....|...+... .+++++++++..|+.|++||+++++.+.....+...+.++.|+|+++++++++.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 222 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 222 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred eccccccceeeeeeecccccccc--ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc
Confidence 11112233344555566666554 4577899999999999999999999998888899999999999999999999999
Q ss_pred CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCC
Q 008939 363 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGS 442 (548)
Q Consensus 363 g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~ 442 (548)
+.|++||++++.++..+.+|...|.+++|++ .+|++++.|+.|++||+++...............
T Consensus 223 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 287 (355)
T d1nexb2 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD---------------KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287 (355)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCCCEEEECS---------------SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCC
T ss_pred ceEEeeecccccccccccccccccccccccc---------------ceeeeeecccccccccccccceecccccCCceEE
Confidence 9999999999999999999999999999976 5899999999999999999887766655333333
Q ss_pred ceecCCCCccccCCeeeecccCCCCceeecCCCCceE-EeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeC
Q 008939 443 PTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLV-AHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMR 512 (548)
Q Consensus 443 ~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~-~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~ 512 (548)
..+.+++ ..+..+ .++.+++||+++.+++. .+.+|.++|++++|+|+. +++++.||+++||.+
T Consensus 288 ~~~~~~~------~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 288 TTFYVSD------NILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CEEEECS------SEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred EEEcCCC------CEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence 3444443 333344 57889999999998874 567899999999999986 667889999777653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.1e-34 Score=276.81 Aligned_cols=284 Identities=14% Similarity=0.186 Sum_probs=223.0
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
..||...|++++|+|+|++|++++.| .|+|||++++. .+..+ ..|...+.+++|+|+ +. +++++.|+.|++|
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~---g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSK---GD-LFTVSWDDHLKVV 81 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTT---SC-EEEEETTTEEEEE
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeecc---ce-eecccceeeEEEe
Confidence 46799999999999999999999888 99999998754 55555 357788999999998 43 6778889999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
++........+... ..+...+.+++|+|++. ++++ ..++.+++|+....
T Consensus 82 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~g~-~~~~-~~~~~i~~~~~~~~-------------------- 130 (299)
T d1nr0a2 82 PAGGSGVDSSKAVA---------NKLSSQPLGLAVSADGD-IAVA-ACYKHIAIYSHGKL-------------------- 130 (299)
T ss_dssp CSSSSSSCTTSCCE---------EECSSCEEEEEECTTSS-CEEE-EESSEEEEEETTEE--------------------
T ss_pred ccCCcccccccccc---------ccccccccccccccccc-cccc-cccccccccccccc--------------------
Confidence 98753211111111 12567889999999998 5544 45678999986431
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE-eeeecCCceEEEEEccCCCEEEEEeCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC-GGKSYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
.. ......+.+++|+|++++|++++.|+.|++||+++++... ....|...|.+++|+|++++|++++.|
T Consensus 131 --------~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 200 (299)
T d1nr0a2 131 --------TE--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 200 (299)
T ss_dssp --------EE--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred --------cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0112567899999999999999999999999998877543 345688999999999999999999999
Q ss_pred CeEEEEECCCceeE---EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCC
Q 008939 363 DLVQVWSMEDRKVV---AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPL 439 (548)
Q Consensus 363 g~I~vwd~~~~~~~---~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~ 439 (548)
+.|++||+.++..+ ..+.+|...|++++|+| ++ .+|++++.|+.|++||++++.....+..
T Consensus 201 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------~~------~~l~sgs~dg~i~iwd~~~~~~~~~~~~--- 264 (299)
T d1nr0a2 201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-------DN------VRLATGSLDNSVIVWNMNKPSDHPIIIK--- 264 (299)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-------TS------SEEEEEETTSCEEEEETTCTTSCCEEET---
T ss_pred cccccccccccccccccccccccccccccccccc-------cc------cceEEEcCCCEEEEEECCCCCcceEEEe---
Confidence 99999999887554 45567999999999999 88 7999999999999999987653322111
Q ss_pred CCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeCC
Q 008939 440 GGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMRP 513 (548)
Q Consensus 440 ~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~~ 513 (548)
...|...|..+.|.++ .|++++.|+.|++||++
T Consensus 265 -----------------------------------------~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 265 -----------------------------------------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp -----------------------------------------TSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred -----------------------------------------cCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 0124567888877765 69999999999999986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-33 Score=275.16 Aligned_cols=294 Identities=16% Similarity=0.217 Sum_probs=225.4
Q ss_pred CceeEEeCCCCCEEEEecCCe--EEEEEccCCCCCCeEEEecCC-CCceEEEecCCCCCCceEEEEEcCCcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYIIFNVGDA--IFISDLNSQDKDPIKSIHFSN-SNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d~--v~vwd~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~ 208 (548)
.+++++|+|+|+.++++.++. ++.|+........+..+..|. ..+++++|+|+.. +.+|++|+.||.|++||+...
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~-g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCC-CCEEEEEeCCCCEEEeeecCC
Confidence 457899999999999988874 455665554445677777664 5799999999633 679999999999999999863
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
... ..+.. ........|..+|.+++|++++. +|++++ .++.+++|+.++
T Consensus 98 ~~~--~~~~~--~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~------------------------ 148 (325)
T d1pgua1 98 KES--NSVEV--NVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDS------------------------ 148 (325)
T ss_dssp GGG--TEEEE--EEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTT------------------------
T ss_pred cce--eeeec--ccccccccccCcEEEEEECCCCC-ccceeeccccceEEEEeecc------------------------
Confidence 211 11111 11111224788999999999999 666554 467899999875
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCE-EEEEECCCeEEEEeCCCCeEEEee---eecCCceEEEEEccC-CCEEEEEeC
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTY-LATVGRDGYLRVFDYSKEQLICGG---KSYYGALLCCAWSMD-GKYILTGGE 361 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~l~~spd-g~~l~sgs~ 361 (548)
...+..+..|...|.+++|+|++++ +++++.|+.+++||+...+..... ..|...|.+++|+|+ +++|++++.
T Consensus 149 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~ 226 (325)
T d1pgua1 149 --GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226 (325)
T ss_dssp --CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred --cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc
Confidence 2456677788999999999998765 778999999999999888766554 456778999999997 689999999
Q ss_pred CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 362 DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 362 dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
|+.|++||+++++.+..+++|...+..+.|++.|. || .+|++++.|+.|+|||+++++++..+..+
T Consensus 227 d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~----dg------~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---- 292 (325)
T d1pgua1 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL----DS------QKFATVGADATIRVWDVTTSKCVQKWTLD---- 292 (325)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES----SS------SEEEEEETTSEEEEEETTTTEEEEEEECC----
T ss_pred ccceeeeeeccccccccccccccccccceeeeecc----CC------CEEEEEeCCCeEEEEECCCCCEEEEEEec----
Confidence 99999999999999999999998887766662110 66 68999999999999999999988766531
Q ss_pred CceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCe--eEEEEeCC-eEEEEECCCeEEEEeC
Q 008939 442 SPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPL--SGLIFTQE-SVLTVCREGHIKIWMR 512 (548)
Q Consensus 442 ~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V--~~l~fspd-~l~t~s~Dg~I~iW~~ 512 (548)
.|...+ .++.|.++ .|++++.||.|++||+
T Consensus 293 -----------------------------------------~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 293 -----------------------------------------KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp -----------------------------------------TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred -----------------------------------------CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 122222 34445555 6999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-33 Score=268.13 Aligned_cols=292 Identities=12% Similarity=0.146 Sum_probs=240.9
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
+...+..|...|++++|+|+ +.+|++|+.||.|++||+++ ++.+. .. ..|...|.+++|+|++.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~---~~~l~s~s~Dg~i~iWd~~~-----~~~~~-~~------~~h~~~V~~~~~~~~~~- 72 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPV---FSVMVSASEDATIKVWDYET-----GDFER-TL------KGHTDSVQDISFDHSGK- 72 (317)
T ss_dssp CSCEEECCSSCEEEEEECSS---SSEEEEEESSSCEEEEETTT-----CCCCE-EE------CCCSSCEEEEEECTTSS-
T ss_pred ccEEEcCCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC-----CCEEE-EE------eCCCCcEEEEeeecccc-
Confidence 45678889999999999998 78999999999999999876 22221 11 13789999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+++++..++.+.+|+.... .....+..|...+.++.|+|+++.+++++.|+.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (317)
T d1vyhc1 73 LLASCSADMTIKLWDFQGF--------------------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126 (317)
T ss_dssp EEEEEETTSCCCEEETTSS--------------------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ccccccccccccccccccc--------------------------ccccccccccccceeeeccCCCceEEeeccCccee
Confidence 9999999999999998752 23344556778899999999999999999999999
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCC---CC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPN---SD 401 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~---~d 401 (548)
+||+++++.+..+..|...+.+++|+|++++|++++.|+.|++|++.+++.+..+.+|...+.++.|+|...... ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 206 (317)
T d1vyhc1 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206 (317)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred EeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988311000 00
Q ss_pred C----CccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCc
Q 008939 402 G----TAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSP 477 (548)
Q Consensus 402 g----~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~ 477 (548)
+ ........+++++.|+.|++||+++++++..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------------------------------------------- 243 (317)
T d1vyhc1 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL------------------------------------------- 243 (317)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------
T ss_pred cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-------------------------------------------
Confidence 0 00001147889999999999999988765543
Q ss_pred eEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcc--ccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 478 LVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAES--QSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 478 ~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~--~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
.+|...|++++|+|++ |++++.||.|++||+...+.. ...|...|. +++|++++|+++...|.+
T Consensus 244 ----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i 313 (317)
T d1vyhc1 244 ----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313 (317)
T ss_dssp ----ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred ----eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 4588999999999974 999999999999999876632 336777776 788999999999887654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=275.96 Aligned_cols=312 Identities=18% Similarity=0.199 Sum_probs=232.7
Q ss_pred CCeEEEEEccCCCCC--CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeee-------
Q 008939 150 GDAIFISDLNSQDKD--PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAH------- 220 (548)
Q Consensus 150 ~d~v~vwd~~~~~~~--~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~------- 220 (548)
.+.+.+|+....... .+.....|.+.|+|++|+|+ +.+|++|+ |+.|++||+.+. +.+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~d---g~~lasg~-d~~i~iW~~~~~-----~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND---GEYLATGC-NKTTQVYRVSDG-----SLVARLSDDSAANK 107 (388)
T ss_dssp SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTT---SSEEEEEC-BSCEEEEETTTC-----CEEEEECC------
T ss_pred CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCC---CCEEEEEe-CCeEEEEEeccc-----ceEeeecccccccc
Confidence 346677886653311 12233348899999999998 78898886 899999998752 1111000
Q ss_pred ----eeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee
Q 008939 221 ----HYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH 296 (548)
Q Consensus 221 ----~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (548)
........|...|++++|+|++. +|++|+.||.|++||... ...+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~--------------------------~~~~~~~~ 160 (388)
T d1erja_ 108 DPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIEN--------------------------RKIVMILQ 160 (388)
T ss_dssp -----------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTT--------------------------TEEEEEEC
T ss_pred cccccccccccCCCCCEEEEEECCCCC-cceecccccccccccccc--------------------------cccccccc
Confidence 00011224778899999999999 999999999999999875 23466677
Q ss_pred ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE
Q 008939 297 ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV 376 (548)
Q Consensus 297 ~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~ 376 (548)
+|...|.+++|++++..+++++.++.+++||+++...+.....+...+..+.+.+++++|++++.|+.|++||++++..+
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred cccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccc
Confidence 88899999999999999999999999999999999888777665554444444558899999999999999999988766
Q ss_pred Eec-------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCC
Q 008939 377 AWG-------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGS 449 (548)
Q Consensus 377 ~~~-------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (548)
..+ .+|...|.+++|+| ++ .+|++++.|+.|++||++++.........
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~-------~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------ 295 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTR-------DG------QSVVSGSLDRSVKLWNLQNANNKSDSKTP------------ 295 (388)
T ss_dssp EEEC------CCCSSCEEEEEECT-------TS------SEEEEEETTSEEEEEEC------------------------
T ss_pred eeeccccccccCCCCCEEEEEECC-------CC------CEEEEEECCCcEEEEeccCCccccccccc------------
Confidence 554 36889999999999 88 79999999999999999887655433220
Q ss_pred CccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCc
Q 008939 450 QSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSET 525 (548)
Q Consensus 450 ~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~ 525 (548)
...........|...|++++|+|+ .|++|+.||.|++||+.+++. ....|...
T Consensus 296 -----------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~ 352 (388)
T d1erja_ 296 -----------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352 (388)
T ss_dssp --------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred -----------------------cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 111234455678999999999997 499999999999999987763 23467777
Q ss_pred EEE--------ecCCCCceEeeeccccc
Q 008939 526 VLS--------TSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 526 v~~--------~s~d~~~l~s~~~~g~~ 545 (548)
|.+ ++||+++|+++...|.+
T Consensus 353 V~~~~~~~~~~~spd~~~l~s~s~Dg~I 380 (388)
T d1erja_ 353 VISVAVANGSSLGPEYNVFATGSGDCKA 380 (388)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred EEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence 763 46899999999887654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.3e-32 Score=270.91 Aligned_cols=245 Identities=19% Similarity=0.270 Sum_probs=199.9
Q ss_pred cCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe
Q 008939 171 FSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH 250 (548)
Q Consensus 171 ~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~ 250 (548)
|..+.|+|++|+|+ +.+|++|+.||.|++||++.... ...... ..|...|++|+|+|+++ +|++++
T Consensus 5 ~~~~pIt~~~~s~d---g~~la~~~~~~~i~iw~~~~~~~----~~~~~l------~gH~~~V~~l~fsp~~~-~l~s~s 70 (371)
T d1k8kc_ 5 FLVEPISCHAWNKD---RTQIAICPNNHEVHIYEKSGNKW----VQVHEL------KEHNGQVTGVDWAPDSN-RIVTCG 70 (371)
T ss_dssp SCSSCCCEEEECTT---SSEEEEECSSSEEEEEEEETTEE----EEEEEE------ECCSSCEEEEEEETTTT-EEEEEE
T ss_pred CCCCCeEEEEECCC---CCEEEEEeCCCEEEEEECCCCCE----EEEEEe------cCCCCCEEEEEECCCCC-EEEEEE
Confidence 45678999999999 88999999999999999875210 111111 14899999999999998 999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
.|+.|+|||+.... ..+...+..|...|.+++|+|++++|++++.|+.|++|++..
T Consensus 71 ~D~~i~vWd~~~~~------------------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 71 TDRNAYVWTLKGRT------------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp TTSCEEEEEEETTE------------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CCCeEEEEeecccc------------------------cccccccccccccccccccccccccceeecccCcceeeeeec
Confidence 99999999997521 122344556778999999999999999999999999999876
Q ss_pred CeE----EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc------------------eeEEeccCCCCCeEE
Q 008939 331 EQL----ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR------------------KVVAWGEGHNSWVSG 388 (548)
Q Consensus 331 ~~~----~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~------------------~~~~~~~~h~~~V~~ 388 (548)
... ......|...|.+++|+|++++|++|+.|+.|++||+... +.+....+|...|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 206 (371)
T d1k8kc_ 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206 (371)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred ccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence 532 3334568889999999999999999999999999998542 355667789999999
Q ss_pred EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCc
Q 008939 389 VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPS 468 (548)
Q Consensus 389 v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~ 468 (548)
++|+| +| .+|++++.|+.|++||+.+++.+..+
T Consensus 207 ~~~s~-------~g------~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------- 239 (371)
T d1k8kc_ 207 VCFSA-------NG------SRVAWVSHDSTVCLADADKKMAVATL---------------------------------- 239 (371)
T ss_dssp EEECS-------SS------SEEEEEETTTEEEEEEGGGTTEEEEE----------------------------------
T ss_pred EEeec-------cc------ccccccccCCcceEEeeecccceeee----------------------------------
Confidence 99999 88 68999999999999999887765443
Q ss_pred eeecCCCCceEEeecCCCCeeEEEEeCCe-EEEEECCCeEEEEeCC
Q 008939 469 MRDVPKLSPLVAHRVHTEPLSGLIFTQES-VLTVCREGHIKIWMRP 513 (548)
Q Consensus 469 ~~d~~~~~~~~~~~~h~~~V~~l~fspd~-l~t~s~Dg~I~iW~~~ 513 (548)
..|..+|.+++|+|+. +++++.|+.+++|...
T Consensus 240 -------------~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~ 272 (371)
T d1k8kc_ 240 -------------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYD 272 (371)
T ss_dssp -------------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred -------------ecccccceeeeecCCCCEEEEEcCCceEEEEee
Confidence 4578899999999984 7777888888887643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-30 Score=253.29 Aligned_cols=307 Identities=14% Similarity=0.179 Sum_probs=239.3
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..+|.+.|.. +++++|++|++++.| .|+|||+.+++ ++..+..|...|.+++|+|+ +|++|+.|+.+++|+
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~~~~-----~l~s~s~D~~~~~~~ 83 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN-----IIISGSTDRTLKVWN 83 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT-----EEEEEETTSCEEEEE
T ss_pred ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC--EEEEEeCCCCCEEEEEeCCC-----ccccceecccccccc
Confidence 4579988865 366678999999888 99999999854 89999999999999999875 899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
.... ..... .. .+...+....+.+ . .++.+..|+.+.+|+.....
T Consensus 84 ~~~~-----~~~~~-~~------~~~~~~~~~~~~~--~-~~~~~~~d~~i~~~~~~~~~-------------------- 128 (342)
T d2ovrb2 84 AETG-----ECIHT-LY------GHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQ-------------------- 128 (342)
T ss_dssp TTTT-----EEEEE-EC------CCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCC--------------------
T ss_pred cccc-----cceec-cc------ccceeEeeeeccc--c-cccccccceeEEEeeccccc--------------------
Confidence 8752 11111 11 1344445444443 3 68889999999999988621
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
....+..+... ...+.+....++.++.|+.|++||....+.+..+.+|...+..+ ++++.+|++++.|+.
T Consensus 129 ------~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~ 198 (342)
T d2ovrb2 129 ------CLHVLMGHVAA--VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTS 198 (342)
T ss_dssp ------EEEEEECCSSC--EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSC
T ss_pred ------ceeeeeccccc--ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCe
Confidence 11122222122 23334456788999999999999999999999988887766554 557889999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|++||++.++++..+.+|...|.++.+++ .+|++++.|+.|++||+...+....+..
T Consensus 199 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---------------~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------- 255 (342)
T d2ovrb2 199 IRVWDVETGNCIHTLTGHQSLTSGMELKD---------------NILVSGNADSTVKIWDIKTGQCLQTLQG-------- 255 (342)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEEEET---------------TEEEEEETTSCEEEEETTTCCEEEEECS--------
T ss_pred EEEeecccceeeeEecccccceeEEecCC---------------CEEEEEcCCCEEEEEecccccccccccc--------
Confidence 99999999999999999999999999876 5899999999999999998876655433
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCcc------
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAES------ 518 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~------ 518 (548)
...|...+.++.|+++.+++++.||.|++||+.+++..
T Consensus 256 ------------------------------------~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 256 ------------------------------------PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp ------------------------------------TTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred ------------------------------------cceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecc
Confidence 12467788999999999999999999999999876532
Q ss_pred -ccCCCCcEE--EecCCCCceEeeecccc
Q 008939 519 -QSSSSETVL--STSSKDKPLLSSKVVTS 544 (548)
Q Consensus 519 -~~~~~~~v~--~~s~d~~~l~s~~~~g~ 544 (548)
...|...|. +++|++++|++|...|.
T Consensus 300 ~~~~~~~~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence 124555666 77899999999988774
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-30 Score=250.73 Aligned_cols=285 Identities=13% Similarity=0.176 Sum_probs=235.6
Q ss_pred CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC
Q 008939 164 DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD 243 (548)
Q Consensus 164 ~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 243 (548)
+..+.+..|...|+|++|+|+ +.+|++|+.||.|++||+.+ ++.+. ... .|...|++++|+|++.
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~---~~~l~sgs~Dg~v~iWd~~~-----~~~~~-~~~------~~~~~v~~v~~~~~~~ 110 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTD---SRLLVSASQDGKLIIWDSYT-----TNKVH-AIP------LRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEEEEETTT-----TEEEE-EEE------CSCSCEEEEEECTTSS
T ss_pred eeeEEECCCCCCEEEEEECCC---CCEEEEEECCCceeeeeccc-----ceeEE-EEe------cccccEEeeEeeccce
Confidence 356678889999999999998 88999999999999999876 22222 111 3788999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeE
Q 008939 244 GAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYL 323 (548)
Q Consensus 244 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v 323 (548)
+|++++.|+.+++|+....... ......+..|........... ...+.....|...
T Consensus 111 -~l~~~~~d~~i~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 166 (340)
T d1tbga_ 111 -YVACGGLDNICSIYNLKTREGN----------------------VRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTC 166 (340)
T ss_dssp -EEEEEETTCCEEEEESSSSCSC----------------------CCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEE
T ss_pred -eeeeecccceeecccccccccc----------------------cccceeccccccccccccccc-ccccccccccccc
Confidence 9999999999999998753211 223344555666666555544 4577888899999
Q ss_pred EEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 324 RVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 324 ~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
..++............+...+....+.+.+.++++++.|+.|++||+++++++..+.+|...|++++|+| ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-------~~- 238 (340)
T d1tbga_ 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-------NG- 238 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-------TS-
T ss_pred cccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-------CC-
Confidence 9999998888777778888999999999999999999999999999999999999999999999999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||++....+..+.. ..
T Consensus 239 -----~~l~s~s~d~~i~~~~~~~~~~~~~~~~---------------------------------------------~~ 268 (340)
T d1tbga_ 239 -----NAFATGSDDATCRLFDLRADQELMTYSH---------------------------------------------DN 268 (340)
T ss_dssp -----SEEEEEETTSCEEEEETTTTEEEEEECC---------------------------------------------TT
T ss_pred -----CEEEEEeCCCeEEEEeeccccccccccc---------------------------------------------cc
Confidence 7999999999999999998877654432 23
Q ss_pred CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCc--cccCCCCcEE--EecCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAE--SQSSSSETVL--STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~--~~~~~~~~v~--~~s~d~~~l~s~~~~g~~ 545 (548)
|...|++++|+|+ .|++++.||.|++||+...+. ....|...|. +|+||+++|+++...|.+
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v 336 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence 5677999999997 499999999999999887663 3346777886 788999999999887765
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-30 Score=249.80 Aligned_cols=280 Identities=16% Similarity=0.167 Sum_probs=213.1
Q ss_pred CeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 165 PIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 165 ~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
..+.+..|...|+|++|+|+ +.+|++|+.||.|++||+++ ++..... ...|...|++++|+|++.
T Consensus 4 ~~~~~~GH~~~V~~l~~s~d---g~~l~s~s~Dg~v~vWd~~~-----~~~~~~~------~~~h~~~v~~v~~~~~g~- 68 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSAD---GKTLFSADAEGHINSWDIST-----GISNRVF------PDVHATMITGIKTTSKGD- 68 (299)
T ss_dssp EEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTT-----CCEEECS------SCSCSSCEEEEEECTTSC-
T ss_pred cceEcCCCCCCcEEEEECCC---CCEEEEEcCCCeEEEEECCC-----CcEEEEE------cCCCCCcEEEEEeeccce-
Confidence 35667889999999999998 88999999999999999876 2222111 123788999999999987
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+++++.|+.+++|+....... ........+...+.+++|++++++++++. ++.++
T Consensus 69 -~~~~~~d~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~ 123 (299)
T d1nr0a2 69 -LFTVSWDDHLKVVPAGGSGVD-----------------------SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIA 123 (299)
T ss_dssp -EEEEETTTEEEEECSSSSSSC-----------------------TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEE
T ss_pred -eecccceeeEEEeccCCcccc-----------------------ccccccccccccccccccccccccccccc-ccccc
Confidence 566778999999998652110 11122334557899999999998777665 56899
Q ss_pred EEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE-eccCCCCCeEEEEEecCCCCCCCCCC
Q 008939 325 VFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGT 403 (548)
Q Consensus 325 vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~dg~ 403 (548)
+|+... ..... ....+.+++|+|++++|++|+.|+.|++||+++++... ....|...|++++|+| ++
T Consensus 124 ~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-------~~- 191 (299)
T d1nr0a2 124 IYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-------NG- 191 (299)
T ss_dssp EEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-------TS-
T ss_pred cccccc--ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cc-
Confidence 999643 22222 33467899999999999999999999999998876543 3446999999999999 88
Q ss_pred ccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 404 AETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 404 ~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
.+|++++.|+.|++||+.++....... .+.+
T Consensus 192 -----~~l~~~~~d~~i~~~~~~~~~~~~~~~--------------------------------------------~~~~ 222 (299)
T d1nr0a2 192 -----AFLVATDQSRKVIPYSVANNFELAHTN--------------------------------------------SWTF 222 (299)
T ss_dssp -----SEEEEEETTSCEEEEEGGGTTEESCCC--------------------------------------------CCCC
T ss_pred -----ccccccccccccccccccccccccccc--------------------------------------------cccc
Confidence 689999999999999998766543221 2346
Q ss_pred CCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccc----cC-CCCcEE-EecCCCCceEeeeccccc
Q 008939 484 HTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQ----SS-SSETVL-STSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 484 h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~----~~-~~~~v~-~~s~d~~~l~s~~~~g~~ 545 (548)
|...|++++|+|+ .|++++.||.|++||+....... .. +...+. .+++++++|+++...|.+
T Consensus 223 h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i 292 (299)
T d1nr0a2 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 292 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCE
T ss_pred cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEE
Confidence 8899999999997 49999999999999988754221 12 333444 456788899998876543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.8e-30 Score=256.73 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=201.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC----CCeEEEecCCCCceEEEec----CCCCCCceEEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK----DPIKSIHFSNSNPVCHAFD----QDAKDGHDLLIGL 195 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~----~~i~~~~~~~~~~~~~~~~----p~~~~~~~l~~g~ 195 (548)
...+|...|.++++++ +++++++.| .|+|||...... ..+.....+...+..+... ....+..++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4468999999999865 688888888 999999876431 1122223333332222211 1111245678899
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCC----cEEEEEeCCCcEEEEEcCCCCCCCCCcc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGD----GAFVVGHADGNLYVYEKSKDGAGDSSFP 271 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~----~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 271 (548)
.||.|++|++... +.................+...+..++|.++.. .++++++.||.+++|++...........
T Consensus 87 ~dg~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 87 FSGDLLFYRITRE--DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp TTSCEEEEEEEEC--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred CCCcEEEEEccCC--CceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 9999999998763 111222211111222334677788999988653 3789999999999999865322111111
Q ss_pred cccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee------eecCCceE
Q 008939 272 VIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG------KSYYGALL 345 (548)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~ 345 (548)
..... .... .........+...+.+++|+|++ +|++|+.|+.|++||+++++++..+ .+|..+|.
T Consensus 165 ~~~~~-~~~~-------~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~ 235 (393)
T d1sq9a_ 165 LNWSP-TLEL-------QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235 (393)
T ss_dssp TCCCC-EEEE-------EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred eeecc-ceec-------ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEE
Confidence 00000 0000 00011112244668999999997 8999999999999999999876544 46889999
Q ss_pred EEEEccCCCEEEEEeCCC---eEEEEECCCceeEEecc-------------CCCCCeEEEEEecCCCCCCCCCCccceeE
Q 008939 346 CCAWSMDGKYILTGGEDD---LVQVWSMEDRKVVAWGE-------------GHNSWVSGVAFDSYWSQPNSDGTAETVMY 409 (548)
Q Consensus 346 ~l~~spdg~~l~sgs~dg---~I~vwd~~~~~~~~~~~-------------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~ 409 (548)
+++|+|||++|++|+.|+ .|++||+++++++..+. +|...|++|+|+| || +
T Consensus 236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-------d~------~ 302 (393)
T d1sq9a_ 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-------SG------E 302 (393)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-------SS------S
T ss_pred EcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-------CC------C
Confidence 999999999999999887 49999999988777663 7999999999999 99 7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+|+|++.|++|+|||+++++++..++.+
T Consensus 303 ~l~S~s~D~~v~vWd~~~g~~~~~l~gH 330 (393)
T d1sq9a_ 303 TLCSAGWDGKLRFWDVKTKERITTLNMH 330 (393)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred eeEEECCCCEEEEEECCCCCEEEEECCc
Confidence 9999999999999999999999999764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6e-30 Score=244.38 Aligned_cols=282 Identities=16% Similarity=0.241 Sum_probs=222.7
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+.|...|++++| +|++|++++.| +|+|||+++++ ++..+..|...|++++|+ +++|++|+.||.|++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~v~~~-----~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--EEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEeeeecc-----cceeecccccccccccc
Confidence 4467778888765 68999999988 99999999854 899999999999999985 45899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... ..... . .........+.+... .++++..++.+.+|+......
T Consensus 82 ~~~~-----~~~~~-~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------- 127 (293)
T d1p22a2 82 VNTG-----EMLNT-L--------IHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTD------------------- 127 (293)
T ss_dssp SSSC-----CEEEE-E--------CCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSC-------------------
T ss_pred cccc-----ccccc-c--------ccccccccccccccc-ceeecccccceeEeecccccc-------------------
Confidence 8862 11111 1 112223334555555 799999999999999876321
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDL 364 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~ 364 (548)
......+..|...|..+.+.+ ..+++++.|+.|++||+++++.+..+.++...+..+.++ +.+|++++.|+.
T Consensus 128 ----~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~ 199 (293)
T d1p22a2 128 ----ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 199 (293)
T ss_dssp ----CEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred ----ccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE
Confidence 122334455678888887765 478899999999999999999999999998888887775 568999999999
Q ss_pred EEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCce
Q 008939 365 VQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPT 444 (548)
Q Consensus 365 I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 444 (548)
|++||+++.+.+..+.+|...|..+.+ ++ .+|++++.|+.|++||+........
T Consensus 200 i~i~d~~~~~~~~~~~~~~~~v~~~~~---------~~------~~l~sg~~dg~i~iwd~~~~~~~~~----------- 253 (293)
T d1p22a2 200 IRLWDIECGACLRVLEGHEELVRCIRF---------DN------KRIVSGAYDGKIKVWDLVAALDPRA----------- 253 (293)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEC---------CS------SEEEEEETTSCEEEEEHHHHTSTTS-----------
T ss_pred EEEEecccceeeeeecccceeeeeccc---------cc------eEEEEEcCCCEEEEEECCCCccccc-----------
Confidence 999999999999999999999887655 44 5899999999999999875432111
Q ss_pred ecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEe
Q 008939 445 FSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWM 511 (548)
Q Consensus 445 ~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~ 511 (548)
.....++..+.+|.+.|++|+|++..|+|++.||+|+|||
T Consensus 254 ---------------------------~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 254 ---------------------------PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ---------------------------CTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred ---------------------------cCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 1122356677899999999999998999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.8e-28 Score=240.77 Aligned_cols=311 Identities=18% Similarity=0.235 Sum_probs=227.2
Q ss_pred eEEEecCCCCc-eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCc
Q 008939 166 IKSIHFSNSNP-VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDG 244 (548)
Q Consensus 166 i~~~~~~~~~~-~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 244 (548)
..+++.|...+ +|++|+ +++|++|+.||.|++||+.+ ++ ...... .|...|++|+|+|++
T Consensus 5 ~~tL~GH~~~vitc~~~~-----~~~l~tgs~Dg~i~vWd~~~-----~~-~~~~l~------~H~~~V~~l~~s~~~-- 65 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFE-----DNYVITGADDKMIRVYDSIN-----KK-FLLQLS------GHDGGVWALKYAHGG-- 65 (355)
T ss_dssp EEEEECCSSSCEEEEEEE-----TTEEEEEETTTEEEEEETTT-----TE-EEEEEE------CCSSCEEEEEEETTT--
T ss_pred cEEECCcCCCcEEEEEEC-----CCEEEEEeCCCeEEEEECCC-----Cc-EEEEEE------CCCCCEEEEEEcCCC--
Confidence 45678888775 677765 55999999999999999876 22 222221 489999999999864
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
+|++|+.|+.|++|+........ ......+...+..+.++++++++++++.|+.|+
T Consensus 66 ~l~s~s~D~~i~iw~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIKKGCCTH------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp EEEEEETTCCEEEEETTTTEEEE------------------------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred EEEEEeccccccccccccccccc------------------------ccccccccccccccccccccceeeeecCCCcEE
Confidence 79999999999999987621100 000011123345567788999999999999999
Q ss_pred EEeCCCCeEEEee-----------------------eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccC
Q 008939 325 VFDYSKEQLICGG-----------------------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEG 381 (548)
Q Consensus 325 vwd~~~~~~~~~~-----------------------~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 381 (548)
+||+.+...+... ..|...+ ..+.+++++++++..|+.|++||+++++.+..+.+
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 199 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeec
Confidence 9999876543221 1122222 34567789999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC-CCCCCceecCCCCccccCCeeee
Q 008939 382 HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG-PLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 382 h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
+...+.++.|+| ++ .++++++.|+.|++||++++.++..+..+ ..+..+.++ +..+..
T Consensus 200 ~~~~~~~~~~~~-------~~------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--------~~~l~~ 258 (355)
T d1nexb2 200 HTDRIYSTIYDH-------ER------KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVS 258 (355)
T ss_dssp CSSCEEEEEEET-------TT------TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--------SSEEEE
T ss_pred cccccccccccc-------cc------eeeecccccceEEeeeccccccccccccccccccccccc--------cceeee
Confidence 999999999999 77 68999999999999999999999888754 334444442 246778
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEE-EeCC-eEEEEECCCeEEEEeCCCCCcc---ccCCCCcEEE--ecCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLI-FTQE-SVLTVCREGHIKIWMRPGVAES---QSSSSETVLS--TSSKD 533 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~-fspd-~l~t~s~Dg~I~iW~~~~~~~~---~~~~~~~v~~--~s~d~ 533 (548)
+..++.+++||+..... .+..|...+..+. |+++ .+++++.|+.|+|||+++++.. ...|...|.+ ++|+
T Consensus 259 ~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~- 335 (355)
T d1nexb2 259 AAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK- 335 (355)
T ss_dssp ECTTSEEEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-
T ss_pred eecccccccccccccce--ecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-
Confidence 88899999999987654 4455667777665 4554 4777778999999999877632 3467778874 4554
Q ss_pred CceEeeeccccc
Q 008939 534 KPLLSSKVVTSS 545 (548)
Q Consensus 534 ~~l~s~~~~g~~ 545 (548)
..|+++...|.+
T Consensus 336 ~~~~~~s~dg~~ 347 (355)
T d1nexb2 336 TLVAAVEKDGQS 347 (355)
T ss_dssp EEEEEEESSSCE
T ss_pred eEEEEEECCCcE
Confidence 345556666654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-28 Score=236.19 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=206.2
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
+.+|..+|++++|+| |++++.| +|++||+.+. ...|...+.+++|+++ ..+++++.|+.|++|+
T Consensus 9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~----~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKA----QEYSSISWDDTLKVNG 73 (287)
T ss_dssp ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCST----TCCEEEETTTEEEETT
T ss_pred ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCC----CeEEEEeecccccccc
Confidence 568999999999987 7888877 9999998753 2357788999999875 3589999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... . ....+.++.+.+++. + +....++.+.+|+....
T Consensus 74 ~~~~------~-------------~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~--------------------- 111 (287)
T d1pgua2 74 ITKH------E-------------FGSQPKVASANNDGF-T-AVLTNDDDLLILQSFTG--------------------- 111 (287)
T ss_dssp EEEE------E-------------CSSCEEEEEECSSSE-E-EEEETTSEEEEEETTTC---------------------
T ss_pred cccc------c-------------cccceeeeeeccCCc-e-EEEeecccceeeeccce---------------------
Confidence 8751 0 234567888888875 4 44556677889987652
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC-eEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeCC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG-YLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~d 362 (548)
+.+..+..+ .. ..++++++..+++++.|+ .+++|++...+....+. .|...+.+++|+|++++|++|+.|
T Consensus 112 -----~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 183 (287)
T d1pgua2 112 -----DIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183 (287)
T ss_dssp -----CEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----eeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc
Confidence 122222222 23 345677788888888775 79999998766555443 467889999999999999999999
Q ss_pred CeEEEEECCCceeEE-eccCCCCCeEEEEEecCCCC---CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 363 DLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQ---PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 363 g~I~vwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~---~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
+.|++||+.+++.+. .+.+|...|.+++|+|.... ...++ .+|++++.|+.|++||++++..
T Consensus 184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~------~~l~sgs~D~~i~iw~~~~~~~-------- 249 (287)
T d1pgua2 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE------DLVATGSLDTNIFIYSVKRPMK-------- 249 (287)
T ss_dssp SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC------CEEEEEETTSCEEEEESSCTTC--------
T ss_pred ccccceeecccccccccccccccccceeeecccccccccccCCC------CeeEeecCCCeEEEEECCCCCe--------
Confidence 999999999987654 46789999999999982110 01122 5899999999999999876332
Q ss_pred CCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC-eEEEEECCCeEEEEeC
Q 008939 439 LGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE-SVLTVCREGHIKIWMR 512 (548)
Q Consensus 439 ~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd-~l~t~s~Dg~I~iW~~ 512 (548)
.+..+.+|...|++++|+|+ .|+|++.|+.|++|++
T Consensus 250 --------------------------------------~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 250 --------------------------------------IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp --------------------------------------CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred --------------------------------------EEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 12234579999999999997 4999999999999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3e-29 Score=252.72 Aligned_cols=299 Identities=11% Similarity=0.096 Sum_probs=202.4
Q ss_pred EEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc-ccceeeeeeeccCCcccCcceEE------EEEec
Q 008939 168 SIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV-GKKLVGAHHYNKDGSVNNSRCTS------VTWVP 240 (548)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~------l~~~p 240 (548)
..+.|...|.+++++++ +|++++.|+.|++||........ ...... .. .+...+.. +....
T Consensus 9 ~~~~H~~~I~~v~~~~~-----~l~S~S~D~~iriWd~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~ 76 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-HF------VHKSGLHHVDVLQAIERDA 76 (393)
T ss_dssp ESSCSSSCEEEEEECSS-----EEEEEETTSEEEEEESBCCTTCCGGGGEEE-EE------CCTTCEEEEEEEEEEETTT
T ss_pred cCCcccCccEEEEEeCC-----EEEEEECCCeEEEEECCCCCCCcccceeEe-ee------eccCCceEeeeEeeeccCC
Confidence 34568889999998653 89999999999999976521111 111111 11 12222222 22222
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-----CCEEE
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-----GTYLA 315 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----g~~l~ 315 (548)
....++++++.||.|++|++.............. .+.....+...+..++|.++ +.+++
T Consensus 77 ~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T d1sq9a_ 77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKL----------------DLLDSDMKKHSFWALKWGASNDRLLSHRLV 140 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE----------------CCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred CCCcEEEEEeCCCcEEEEEccCCCceeeeecccc----------------ceeeeccCCCceEEEEEecCCCcccccEEE
Confidence 2223678899999999999875332211110000 00001123356777777764 46899
Q ss_pred EEECCCeEEEEeCCCCe---------------E---EEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEE
Q 008939 316 TVGRDGYLRVFDYSKEQ---------------L---ICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 316 s~~~dg~v~vwd~~~~~---------------~---~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
+++.||.+++|++.... . ......+...+.+++|+|++ +|++|+.|+.|+|||+++++++.
T Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~ 219 (393)
T d1sq9a_ 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219 (393)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc
Confidence 99999999999984211 0 11122345668999999998 89999999999999999987765
Q ss_pred ec------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC---eEEEEECCCCeEEeeeecCCCCCCceecCC
Q 008939 378 WG------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT---RLLLWDLEMDEIVVPLRRGPLGGSPTFSTG 448 (548)
Q Consensus 378 ~~------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 448 (548)
.+ .+|..+|.+|+|+| || .+|++++.|+ .|++||+++++++..+.....
T Consensus 220 ~~~~~~~l~~h~~~V~~l~~sp-------dg------~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~--------- 277 (393)
T d1sq9a_ 220 NFESQHSMINNSNSIRSVKFSP-------QG------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH--------- 277 (393)
T ss_dssp EEECCC---CCCCCEEEEEECS-------ST------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------
T ss_pred ccccccccccccceEEEccccc-------cc------ceeeeecCCCCcceeeecccccceeeeeeccccc---------
Confidence 43 47999999999999 99 7999999886 599999999999887754111
Q ss_pred CCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc--ccCCCC
Q 008939 449 SQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES--QSSSSE 524 (548)
Q Consensus 449 ~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~--~~~~~~ 524 (548)
.......+.+|.+.|++|+|+|| .|+|++.|++|+|||+.++... ..+|..
T Consensus 278 -------------------------~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~ 332 (393)
T d1sq9a_ 278 -------------------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332 (393)
T ss_dssp -------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred -------------------------cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence 11233345689999999999997 4999999999999999887633 235554
Q ss_pred cE------EEecCCCCceEeeecc
Q 008939 525 TV------LSTSSKDKPLLSSKVV 542 (548)
Q Consensus 525 ~v------~~~s~d~~~l~s~~~~ 542 (548)
.| .+++++++.++++...
T Consensus 333 ~v~~~~~~~~~~~~~~~~~~~~~~ 356 (393)
T d1sq9a_ 333 DIEIEEDILAVDEHGDSLAEPGVF 356 (393)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred cccCCccEEEECCCCCEEEEcccc
Confidence 44 3678888887766443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-28 Score=240.94 Aligned_cols=249 Identities=17% Similarity=0.180 Sum_probs=190.9
Q ss_pred ccCCC-CCCceeEEeCC--CCCEEEEecCC-eEEEEEccCCCCCCe------EEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSS-STSMTNTNFDG--KGTYIIFNVGD-AIFISDLNSQDKDPI------KSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h-~~~v~~~~~~~--~g~~l~~~~~d-~v~vwd~~~~~~~~i------~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
.+.+| ...+++++|+| +|.+|++++.| +|+|||+........ .....+...+.+++|+++ +.+|+++
T Consensus 57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~ 133 (325)
T d1pgua1 57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE---GRRLCVV 133 (325)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT---SSEEEEE
T ss_pred EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCC---CCcccee
Confidence 34455 56899999997 56799988877 999999976431111 123346678999999998 7778877
Q ss_pred Ec--CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccc
Q 008939 195 LN--SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 195 ~~--dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
+. ++.+.+|+.+. ++.+.. . ..|...|++++|+|+++.++++++.|+.|++||......
T Consensus 134 ~~~~~~~~~~~~~~~-----~~~~~~-~------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~------- 194 (325)
T d1pgua1 134 GEGRDNFGVFISWDS-----GNSLGE-V------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF------- 194 (325)
T ss_dssp ECCSSCSEEEEETTT-----CCEEEE-C------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------
T ss_pred eccccceEEEEeecc-----ccccee-e------eecccccccccccccccceEEEeeccccccccccccccc-------
Confidence 65 56789998765 222211 1 237899999999999986788899999999999864110
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC-CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEc-
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD-GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWS- 350 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~s- 350 (548)
.........|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+|...+.++.|+
T Consensus 195 ----------------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 258 (325)
T d1pgua1 195 ----------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258 (325)
T ss_dssp ----------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred ----------------ceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeee
Confidence 0111223456788999999996 6899999999999999999999999999888877666665
Q ss_pred --cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCC--eEE--EEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEE
Q 008939 351 --MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSW--VSG--VAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWD 424 (548)
Q Consensus 351 --pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~--V~~--v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd 424 (548)
||+++|++++.|+.|+|||+++++++..+..|... +.. +.+.+ ++ +|++++.|+.|++||
T Consensus 259 ~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-------NG-------RIISLSLDGTLNFYE 324 (325)
T ss_dssp EESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-------TT-------EEEEEETTSCEEEEE
T ss_pred eccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC-------CC-------EEEEEECCCEEEEEE
Confidence 68999999999999999999999998887765543 334 44444 44 789999999999999
Q ss_pred C
Q 008939 425 L 425 (548)
Q Consensus 425 ~ 425 (548)
+
T Consensus 325 l 325 (325)
T d1pgua1 325 L 325 (325)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.6e-27 Score=229.68 Aligned_cols=295 Identities=11% Similarity=0.020 Sum_probs=205.9
Q ss_pred eEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 166 IKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 166 i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
|...+.|.+.|++++|+|+ +.+|++|+.||.|++||++... ....+.... .|..+|++++|+|++..+
T Consensus 4 v~~~~~h~d~I~~l~fsp~---~~~L~s~s~Dg~v~iwd~~~~~--~~~~~~~~~-------~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQA--KNVDLLQSL-------RYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG---GTEEEEEETTSEEEEEEEETTT--TEEEEEEEE-------ECSSCEEEEEEEESSSEE
T ss_pred EEcCCCCCCCEEEEEEeCC---CCEEEEEECCCeEEEEEccCCC--cceEEEEec-------CCCCCEEEEEEeCCCCCE
Confidence 4445567889999999998 8899999999999999997621 111122111 278999999999987768
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEECCCeEE
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGRDGYLR 324 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~v~ 324 (548)
|++|+.||.|++|++..... ...... +........+.++...+++++.|+.++
T Consensus 72 l~sg~~d~~v~~w~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPS--------------------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125 (342)
T ss_dssp EEEEETTSCEEEECSSSSSS--------------------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE
T ss_pred EEEcccccceeeeecccccc--------------------------cccccccccccccccccccccccccccccccccc
Confidence 99999999999999976321 111111 123344455666788999999999999
Q ss_pred EEeCCCCeE----EEeeeec--CCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE---EeccCCCCCeEEEEEecCC
Q 008939 325 VFDYSKEQL----ICGGKSY--YGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV---AWGEGHNSWVSGVAFDSYW 395 (548)
Q Consensus 325 vwd~~~~~~----~~~~~~~--~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~---~~~~~h~~~V~~v~~~p~~ 395 (548)
+||++.... ......+ ......+.+.+++..+++++.|+.|++||+...+.. .....+...+.+..+.+.
T Consensus 126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 204 (342)
T d1yfqa_ 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK- 204 (342)
T ss_dssp EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG-
T ss_pred eeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC-
Confidence 999865432 2222222 234456778888999999999999999999876432 233345566677776651
Q ss_pred CCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCC
Q 008939 396 SQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL 475 (548)
Q Consensus 396 ~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~ 475 (548)
++ ..+++++.|+.+.+|++........... .+.....
T Consensus 205 -----~~------~~~~~~s~dg~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~~ 241 (342)
T d1yfqa_ 205 -----EQ------EGYACSSIDGRVAVEFFDDQGDDYNSSK--------------------------------RFAFRCH 241 (342)
T ss_dssp -----GG------CEEEEEETTSEEEEEECCTTCCSTTCTT--------------------------------CEEEECC
T ss_pred -----CC------CEEEeecCCCeEEEEEecCCcceeeccc--------------------------------cceeeee
Confidence 44 5899999999999999876443211110 0000011
Q ss_pred CceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCcc-cc--CCCCcEEEecCCCCceEeeecc
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAES-QS--SSSETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~-~~--~~~~~v~~~s~d~~~l~s~~~~ 542 (548)
........|...|++|+|+|+ .|+||+.||.|+|||+..++.. .. .+...+.+++|++++|+++.-.
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 111223467888999999997 4999999999999999877632 22 3455677999999999887544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.5e-26 Score=220.25 Aligned_cols=279 Identities=14% Similarity=0.152 Sum_probs=212.5
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSV 203 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iw 203 (548)
.+.+|...|.+++|+++ ++++++.| .+++|+..... ...........+....+.+ ..++.+..|+.|.+|
T Consensus 52 ~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~i~~~ 122 (342)
T d2ovrb2 52 TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVW 122 (342)
T ss_dssp ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEE
T ss_pred EEeCCCCCEEEEEeCCC--ccccceeccccccccccccc--ceecccccceeEeeeeccc-----ccccccccceeEEEe
Confidence 34579999999999874 78888777 99999998633 4444444444455544443 468899999999999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+.... +... ... ........+.+... .+++++.|+.|++||...
T Consensus 123 ~~~~~-----~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~~d~~i~~~d~~~--------------------- 166 (342)
T d2ovrb2 123 DIETG-----QCLH-VLM--------GHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPET--------------------- 166 (342)
T ss_dssp ESSSC-----CEEE-EEE--------CCSSCEEEEEECSS-CEEEEETTSCEEEEEGGG---------------------
T ss_pred ecccc-----ccee-eee--------cccccceeeccccc-eeeeecCCCeEEEeeccc---------------------
Confidence 98762 1111 111 11122333444555 789999999999999875
Q ss_pred CCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC
Q 008939 284 PRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 363 (548)
Q Consensus 284 ~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg 363 (548)
...+..+..|...+..+.+ ++.+|++++.||.|++||++.++++..+..|...+.++.+++ ++|++++.|+
T Consensus 167 -----~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~ 237 (342)
T d2ovrb2 167 -----ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADS 237 (342)
T ss_dssp -----TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTS
T ss_pred -----ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCC
Confidence 2335556666666665554 678999999999999999999999999999999998887764 6999999999
Q ss_pred eEEEEECCCceeEEecc---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCC
Q 008939 364 LVQVWSMEDRKVVAWGE---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLG 440 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~ 440 (548)
.|++||+...+....+. .|...+.++.+++ .++++++.||.|++||++++++++.+...
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~--- 299 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---------------NFVITSSDDGTVKLWDLKTGEFIRNLVTL--- 299 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---------------SEEEEEETTSEEEEEETTTCCEEEEEEEC---
T ss_pred EEEEEecccccccccccccceeeeceeecccCC---------------CeeEEEcCCCEEEEEECCCCCEEEEEecc---
Confidence 99999999888776665 4667888888865 58999999999999999999988776430
Q ss_pred CCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCe----EEEEeCCC
Q 008939 441 GSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH----IKIWMRPG 514 (548)
Q Consensus 441 ~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~----I~iW~~~~ 514 (548)
...+|...|++++|+|++ |++|+.||+ |++||+..
T Consensus 300 ---------------------------------------~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 300 ---------------------------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ---------------------------------------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ---------------------------------------cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 012578899999999985 789988885 99999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.6e-27 Score=227.79 Aligned_cols=308 Identities=10% Similarity=0.089 Sum_probs=214.5
Q ss_pred CCCCCCceeEEeCCCCCEEEEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 127 SSSSTSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 127 ~~h~~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
.+|.+.|++++|+|++++|++++.| +|+|||++.... ..+.....|...|.|++|+|+. +.+|++|+.||.|++|+
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~--~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--DLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--SEEEEEEETTSCEEEEC
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC--CCEEEEcccccceeeee
Confidence 4788999999999999999999888 999999987442 1222333488899999999873 56899999999999999
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
+... ........ .+........+.++.. .+++++.|+.+++||++.............
T Consensus 86 ~~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~---------- 143 (342)
T d1yfqa_ 86 LIGS-----PSFQALTN------NEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN---------- 143 (342)
T ss_dssp SSSS-----SSEEECBS------CCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESC----------
T ss_pred cccc-----cccccccc------cccccccccccccccc-cccccccccccceeeccccccceeeecccc----------
Confidence 8762 11111110 1233344555666666 899999999999999875221110000000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEE---eeeecCCceEEEEEc-cCCCEEEEEe
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLIC---GGKSYYGALLCCAWS-MDGKYILTGG 360 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~l~~s-pdg~~l~sgs 360 (548)
...+......+.+.+++..+++++.|+.|++||+...+... ....+...+.++.+. .++..+++++
T Consensus 144 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 213 (342)
T d1yfqa_ 144 ----------SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp ----------SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred ----------cccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence 00011334456677788899999999999999997664322 223334455565554 4667899999
Q ss_pred CCCeEEEEECCCceeE---------------EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 361 EDDLVQVWSMEDRKVV---------------AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~~---------------~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
.|+.+.+|++...... .....|...|++|+|+| ++ .+|++|+.||.|++||+
T Consensus 214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------~~------~~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-------RH------KFLYTAGSDGIISCWNL 280 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-------TT------CCEEEEETTSCEEEEET
T ss_pred CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-------Cc------cEEEEECCCCEEEEEEC
Confidence 9999999998653211 11235777899999999 88 78999999999999999
Q ss_pred CCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCC
Q 008939 426 EMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREG 505 (548)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg 505 (548)
++++++..+.. .|...+.++.++++.|++++.|+
T Consensus 281 ~~~~~l~~~~~----------------------------------------------~~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 281 QTRKKIKNFAK----------------------------------------------FNEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp TTTEEEEECCC----------------------------------------------CSSSEEEEEEECSSEEEEEEECT
T ss_pred CCCcEEEEecC----------------------------------------------CCCCEEEEEEeCCCEEEEEEcCC
Confidence 99987765432 24445555656666799999999
Q ss_pred eEEEEeCCCCCccccCCCCcEEEe
Q 008939 506 HIKIWMRPGVAESQSSSSETVLST 529 (548)
Q Consensus 506 ~I~iW~~~~~~~~~~~~~~~v~~~ 529 (548)
.+++|...... ...+...|+.+
T Consensus 315 ~~~~~~~~~~~--~~~~~~~i~~~ 336 (342)
T d1yfqa_ 315 TFKTNAAIDQT--IELNASSIYII 336 (342)
T ss_dssp HHHHCSSSCTT--SCCCCCEEEEE
T ss_pred cEEEeeeeCCC--ccCCCCeEEEE
Confidence 99999864432 33455566643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=1.6e-27 Score=235.55 Aligned_cols=317 Identities=11% Similarity=-0.014 Sum_probs=219.5
Q ss_pred eeEEeCC-CCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC--cEEEEEeeeccc
Q 008939 134 TNTNFDG-KGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG--DVYSVSLRQQLQ 210 (548)
Q Consensus 134 ~~~~~~~-~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg--~I~iwdl~~~~~ 210 (548)
..-.|+| ||+++++.+.+.|+|||++.+ .+..+ .|...+.+++|+|+ ++.|++++.+. .|++||++..
T Consensus 6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~---~~~~~-~~~~~v~~~~~spD---g~~l~~~~~~~g~~v~v~d~~~~-- 76 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGT---YVLKV-PEPLRIRYVRRGGD---TKVAFIHGTREGDFLGIYDYRTG-- 76 (360)
T ss_dssp GEEEEEECGGGCEEEEETTEEEEECTTSS---BEEEC-SCCSCEEEEEECSS---SEEEEEEEETTEEEEEEEETTTC--
T ss_pred hcccccCCCCCEEEEEECCeEEEEECCCC---cEEEc-cCCCCEEEEEECCC---CCEEEEEEcCCCCEEEEEECCCC--
Confidence 4578999 999999999889999999863 34444 48889999999999 77788776654 6899998762
Q ss_pred ccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCC
Q 008939 211 DVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSN 290 (548)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (548)
++.... .|...|.+++|+|++. +|++++.++.+++|++.. ..
T Consensus 77 ----~~~~~~-------~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~--------------------------~~ 118 (360)
T d1k32a3 77 ----KAEKFE-------ENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET--------------------------GK 118 (360)
T ss_dssp ----CEEECC-------CCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT--------------------------CC
T ss_pred ----cEEEee-------CCCceEEeeeeccccc-ccceeccccccccccccc--------------------------cc
Confidence 222111 2788999999999999 999999999999999976 23
Q ss_pred CeeEeeecCCCeEEEEECCCCCEEEEEE----------CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe
Q 008939 291 PIARWHICQGSINSIAFSTDGTYLATVG----------RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG 360 (548)
Q Consensus 291 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs 360 (548)
....+..|...+.+++|+|+|++|+.+. .++.+++||+.+++..... .+...+..++|+|||++|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe
Confidence 4556677788999999999999998654 3456999999988766543 4667889999999999999999
Q ss_pred CCCeEEEEECCCcee-------EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-----CeEEEEECCCC
Q 008939 361 EDDLVQVWSMEDRKV-------VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-----TRLLLWDLEMD 428 (548)
Q Consensus 361 ~dg~I~vwd~~~~~~-------~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-----g~i~lwd~~~~ 428 (548)
.++.+.+||...... ...+..|...+..+.|+| ++ ..++++..+ ..+..+++..+
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-------RS------MTSEAGEYDLNDMYKRSSPINVDPG 264 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC-------GG------GSCCCCCCCCTTGGGGCEECSCCCB
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECC-------Cc------CcccccceeecccccceeecccCcC
Confidence 999999999865432 222233444444455555 54 223332222 12333344443
Q ss_pred eEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCe
Q 008939 429 EIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGH 506 (548)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~ 506 (548)
..............+.+...+.. ...+..+..+..+++||+.+.+. . .|.+.|.+++|+||+ |++++.||.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~-~---~~~~~v~~~~~SpDG~~l~~~~~Dg~ 337 (360)
T d1k32a3 265 DYRMIIPLESSILIYSVPVHGEF---AAYYQGAPEKGVLLKYDVKTRKV-T---EVKNNLTDLRLSADRKTVMVRKDDGK 337 (360)
T ss_dssp CEEEEEECSSEEEEEECCCCCSH---HHHHHCCCCCEEEEEEETTTCCE-E---EEEEEEEEEEECTTSCEEEEEETTSC
T ss_pred ceeEeeecCCCceEEEEEecCCC---eeEEEecCCCCEEEEEECCCCeE-E---EecCCcCEEEECCCCCEEEEEECCCe
Confidence 33222211111111111111110 01123444456778898877543 2 344569999999984 999999999
Q ss_pred EEEEeCCCCCcc
Q 008939 507 IKIWMRPGVAES 518 (548)
Q Consensus 507 I~iW~~~~~~~~ 518 (548)
|++||+..++.+
T Consensus 338 i~v~d~~~~~~~ 349 (360)
T d1k32a3 338 IYTFPLEKPEDE 349 (360)
T ss_dssp EEEEESSCTTSC
T ss_pred EEEEECCCCCcc
Confidence 999999876543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-25 Score=215.65 Aligned_cols=260 Identities=16% Similarity=0.128 Sum_probs=203.1
Q ss_pred CCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCC
Q 008939 163 KDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGG 242 (548)
Q Consensus 163 ~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 242 (548)
.++++.+..|...|++++|+| |++|+.||.|++||+.+. . ..|...|.+++|+++.
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-------l~sgs~Dg~v~~Wd~~~~-----~------------~~h~~~V~~~~~~~~~ 58 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----H------------QDHSNLIVSLDNSKAQ 58 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-------TEEEETTSCEEETTTTEE-----E------------CCCCSCEEEEECCSTT
T ss_pred cceeEEECCCCCceEEEEECc-------EEEEeCCCeEEEEECCCC-----C------------CCCCCCEEEEEecCCC
Confidence 358899999999999999976 799999999999997651 1 1378899999999876
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCe
Q 008939 243 DGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGY 322 (548)
Q Consensus 243 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~ 322 (548)
.+++++.|++|++|++.... ....+.++++++++..++++ .++.
T Consensus 59 --~~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (287)
T d1pgua2 59 --EYSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANNDGFTAVLT-NDDD 102 (287)
T ss_dssp --CCEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSSSEEEEEE-TTSE
T ss_pred --eEEEEeeccccccccccccc---------------------------------cccceeeeeeccCCceEEEe-eccc
Confidence 48999999999999976410 12457788999988766655 5677
Q ss_pred EEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC-eEEEEECCCceeEEecc-CCCCCeEEEEEecCCCCCCC
Q 008939 323 LRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD-LVQVWSMEDRKVVAWGE-GHNSWVSGVAFDSYWSQPNS 400 (548)
Q Consensus 323 v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg-~I~vwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~ 400 (548)
+.+|+..+++.+..+..+ .. ..++++++..+++++.|+ .|++|++...+....+. .|...|++++|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------- 172 (287)
T d1pgua2 103 LLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP------- 172 (287)
T ss_dssp EEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-------
T ss_pred ceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEecc-------
Confidence 999999999888777643 33 356778888888888765 79999998776655554 5888999999999
Q ss_pred CCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEE
Q 008939 401 DGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVA 480 (548)
Q Consensus 401 dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~ 480 (548)
+| .+|++++.|+.|++||+.+++.....
T Consensus 173 ~~------~~l~~g~~dg~i~i~d~~~~~~~~~~---------------------------------------------- 200 (287)
T d1pgua2 173 SE------TYIAAGDVMGKILLYDLQSREVKTSR---------------------------------------------- 200 (287)
T ss_dssp TS------SEEEEEETTSCEEEEETTTTEEEECC----------------------------------------------
T ss_pred Cc------cccccccccccccceeeccccccccc----------------------------------------------
Confidence 98 79999999999999999987754321
Q ss_pred eecCCCCeeEEEEeCC------------eEEEEECCCeEEEEeCCCCC---ccccCCCCcEE--EecCCCCceEeeeccc
Q 008939 481 HRVHTEPLSGLIFTQE------------SVLTVCREGHIKIWMRPGVA---ESQSSSSETVL--STSSKDKPLLSSKVVT 543 (548)
Q Consensus 481 ~~~h~~~V~~l~fspd------------~l~t~s~Dg~I~iW~~~~~~---~~~~~~~~~v~--~~s~d~~~l~s~~~~g 543 (548)
+.+|..+|++++|+|+ .|++|+.|++|+||++.... .....|...|. +++|+++ |+++...|
T Consensus 201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~ 279 (287)
T d1pgua2 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA 279 (287)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCC
Confidence 2358889999999873 38999999999999986633 22336778887 5578765 67776665
Q ss_pred cc
Q 008939 544 SS 545 (548)
Q Consensus 544 ~~ 545 (548)
.+
T Consensus 280 ~v 281 (287)
T d1pgua2 280 CI 281 (287)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.7e-25 Score=210.68 Aligned_cols=262 Identities=18% Similarity=0.235 Sum_probs=210.0
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
|...|+|++| +++ +|++|+.||+|+|||+.+ .+++..+.+|.+.|.+++|
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~--------------------------~~~~~~l~~H~~~V~~v~~- 63 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNT--------------------------LECKRILTGHTGSVLCLQY- 63 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSS--------------------------CCEEEEECCCSSCEEEEEC-
T ss_pred CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCC--------------------------CcEEEEEecCCCCEeeeec-
Confidence 6788998765 677 999999999999999976 3567888999999999987
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCce---eEEeccCCCCC
Q 008939 309 TDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRK---VVAWGEGHNSW 385 (548)
Q Consensus 309 p~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~---~~~~~~~h~~~ 385 (548)
++++|++++.|+.|++|++..+........+... ...+.+....++++..++.+.+||+.... ....+..|...
T Consensus 64 -~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (293)
T d1p22a2 64 -DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140 (293)
T ss_dssp -CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred -ccceeecccccccccccccccccccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccc
Confidence 5689999999999999999988877665544333 34455666789999999999999998754 34556679999
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCC
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQP 465 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~ 465 (548)
|..+.+.+ ..+++++.|+.|++||+++++.+..+.... .....+... +..+..+..++
T Consensus 141 v~~~~~~~---------------~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~------~~~l~~~~~dg 198 (293)
T d1p22a2 141 VNVVDFDD---------------KYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYR------DRLVVSGSSDN 198 (293)
T ss_dssp EEEEEEET---------------TEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEE------TTEEEEEETTS
T ss_pred cccceecc---------------cccccccCCCceeeecCCCCcEEEEEcccc-cccccccCC------CCeEEEecCCC
Confidence 99999876 368899999999999999999988876532 221222221 34567888899
Q ss_pred CCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCC-----------ccccCCCCcEEEecCCCC
Q 008939 466 APSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVA-----------ESQSSSSETVLSTSSKDK 534 (548)
Q Consensus 466 ~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~-----------~~~~~~~~~v~~~s~d~~ 534 (548)
.+++||+....++..+.+|...|..+.+....|++++.||.|++||+.... .....|...|.+++.|++
T Consensus 199 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~ 278 (293)
T d1p22a2 199 TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278 (293)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS
T ss_pred EEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC
Confidence 999999999999999999999998877777789999999999999964322 122367778888888999
Q ss_pred ceEeeeccccc
Q 008939 535 PLLSSKVVTSS 545 (548)
Q Consensus 535 ~l~s~~~~g~~ 545 (548)
+|+++...|.+
T Consensus 279 ~l~s~s~Dg~i 289 (293)
T d1p22a2 279 QIVSSSHDDTI 289 (293)
T ss_dssp CEEECCSSSEE
T ss_pred EEEEEecCCEE
Confidence 99999887754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.9e-25 Score=220.38 Aligned_cols=306 Identities=12% Similarity=0.048 Sum_probs=215.5
Q ss_pred EEEecC-CCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCC-c
Q 008939 178 CHAFDQ-DAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADG-N 254 (548)
Q Consensus 178 ~~~~~p-~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg-~ 254 (548)
.-.|+| + |+++++++ +|+|++||+.. ..+... .|...|++++|+|+++ .|++++ .+| .
T Consensus 7 ~~~fSP~d---G~~~a~~~-~g~v~v~d~~~------~~~~~~--------~~~~~v~~~~~spDg~-~l~~~~~~~g~~ 67 (360)
T d1k32a3 7 AEDFSPLD---GDLIAFVS-RGQAFIQDVSG------TYVLKV--------PEPLRIRYVRRGGDTK-VAFIHGTREGDF 67 (360)
T ss_dssp EEEEEECG---GGCEEEEE-TTEEEEECTTS------SBEEEC--------SCCSCEEEEEECSSSE-EEEEEEETTEEE
T ss_pred cccccCCC---CCEEEEEE-CCeEEEEECCC------CcEEEc--------cCCCCEEEEEECCCCC-EEEEEEcCCCCE
Confidence 357999 6 77787765 68999999875 222221 2788999999999999 666554 443 7
Q ss_pred EEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEE
Q 008939 255 LYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLI 334 (548)
Q Consensus 255 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~ 334 (548)
|++||++. ..+..+..|...|.+++|+|++++|++++.++.+++|++.+++..
T Consensus 68 v~v~d~~~---------------------------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 120 (360)
T d1k32a3 68 LGIYDYRT---------------------------GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120 (360)
T ss_dssp EEEEETTT---------------------------CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCC---------------------------CcEEEeeCCCceEEeeeecccccccceecccccccccccccccee
Confidence 89999875 234556677899999999999999999999999999999999998
Q ss_pred EeeeecCCceEEEEEccCCCEEEEEe----------CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 335 CGGKSYYGALLCCAWSMDGKYILTGG----------EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 335 ~~~~~~~~~v~~l~~spdg~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
..+..|...+.+++|+|||++|+.+. .++.+++||+.+++..... .|...+..++|+| ||
T Consensus 121 ~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp-------dg-- 190 (360)
T d1k32a3 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA-------DS-- 190 (360)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT-------TS--
T ss_pred eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC-------CC--
Confidence 88888999999999999999998643 4557999999988766544 4778889999999 99
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEe-------eeecC-CCCCCceecCCCCccccCCeeeecccCCCCceeecCCC-
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVV-------PLRRG-PLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKL- 475 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~- 475 (548)
++|++++.|+.+.+||........ .+... .....+.+++++....... ........+++.++..
T Consensus 191 ----~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 263 (360)
T d1k32a3 191 ----KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE---YDLNDMYKRSSPINVDP 263 (360)
T ss_dssp ----CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC---CCCTTGGGGCEECSCCC
T ss_pred ----CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccc---eeecccccceeecccCc
Confidence 789999999999999987654321 11111 1222333443332111000 0000111223333211
Q ss_pred CceEEeecCCCCeeEEEEeCC-----eEEEEECCCeEEEEeCCCCCccccCCCCcEEEecCCCCceEeeecccccc
Q 008939 476 SPLVAHRVHTEPLSGLIFTQE-----SVLTVCREGHIKIWMRPGVAESQSSSSETVLSTSSKDKPLLSSKVVTSSY 546 (548)
Q Consensus 476 ~~~~~~~~h~~~V~~l~fspd-----~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~~~s~d~~~l~s~~~~g~~~ 546 (548)
.....+..+.+.+..+.+.+. .+++++.|+.|++||+.+++.......-.-++|||||++|+++...|.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339 (360)
T ss_dssp BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEE
T ss_pred CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEE
Confidence 123344556666666666553 27888999999999998876443322222248999999999998887654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=2.2e-21 Score=196.87 Aligned_cols=356 Identities=11% Similarity=-0.001 Sum_probs=229.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
-++++..++ .|+|||+.+++ .+..+..+ ..+..++|+|+ |++|++++.||.|++||+.+. +... ...
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~--~~~~l~~g-~~~~~vafSPD---Gk~l~~~~~d~~v~vwd~~t~-----~~~~-~~~ 100 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKK--IVKVIDTG-YAVHISRMSAS---GRYLLVIGRDARIDMIDLWAK-----EPTK-VAE 100 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCS--EEEEEECC-SSEEEEEECTT---SCEEEEEETTSEEEEEETTSS-----SCEE-EEE
T ss_pred EEEEEEcCCCEEEEEECCCCc--EEEEEeCC-CCeeEEEECCC---CCEEEEEeCCCCEEEEEccCC-----ceeE-EEE
Confidence 345556666 99999999854 88888865 47999999999 889999999999999999862 1111 000
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
. +.+..|...+.+++|+|||+.+++++..++.+.+||..... .......... ......-.+.+.
T Consensus 101 i-~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~ 164 (426)
T d1hzua2 101 I-KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGM--------------TVDTQTYHPEPR 164 (426)
T ss_dssp E-ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEE--------------CSSSCCEESCCC
T ss_pred E-eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCC--------------CccceeecCCCc
Confidence 1 11223566677888899999555666789999999988632 1111110000 000000112355
Q ss_pred eEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeE-EEeeeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLATVGR-DGYLRVFDYSKEQL-ICGGKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~~~~~ 378 (548)
...+.+++++..++.... .+.+.+++...... ......+...+..++|+|++++++++. .+..+.+++..+++.+..
T Consensus 165 ~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (426)
T d1hzua2 165 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 244 (426)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE
Confidence 667788888877766554 46677777765543 223345777899999999999877766 467899999999988776
Q ss_pred ccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-------eEEeeeecC-CCCCCceecCC
Q 008939 379 GEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-------EIVVPLRRG-PLGGSPTFSTG 448 (548)
Q Consensus 379 ~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-------~~~~~~~~~-~~~~~~~~~~~ 448 (548)
... +..+...+.+.. ++. .....++...|+.+.+|+.... ++...+..+ .....+.|+|+
T Consensus 245 ~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd 314 (426)
T d1hzua2 245 VDVGKTPHPGRGANFVH-------PKY---GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK 314 (426)
T ss_dssp EECSSCCCCSCCEEEEE-------TTT---EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred eccCCcccccceeeeec-------CCC---CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence 642 223333444443 221 1123334456888888886543 566666654 45678899998
Q ss_pred CCccccCCee-eecccCCCCceeecCCCCceEEe---------ecCCCCeeEEEEeCCe---EEEE----ECCCeEEEEe
Q 008939 449 SQSAHWDNVC-PVGTLQPAPSMRDVPKLSPLVAH---------RVHTEPLSGLIFTQES---VLTV----CREGHIKIWM 511 (548)
Q Consensus 449 ~~~~~~d~~~-~~g~~~~~~~~~d~~~~~~~~~~---------~~h~~~V~~l~fspd~---l~t~----s~Dg~I~iW~ 511 (548)
+.....+... ..+..+..+++||+.++++..++ ..|...|..++|+||+ ++++ +.|+.|+|||
T Consensus 315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred CceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence 8532211111 13455678999999988876554 2456679999999985 3443 3689999999
Q ss_pred CCCCCccccCCCCcEEEecCCCCceEe
Q 008939 512 RPGVAESQSSSSETVLSTSSKDKPLLS 538 (548)
Q Consensus 512 ~~~~~~~~~~~~~~v~~~s~d~~~l~s 538 (548)
..+.++...-.... .++|+|++-+.
T Consensus 395 ~~T~k~~~~i~~~~--~~tp~Gk~~~~ 419 (426)
T d1hzua2 395 DKTLKLKAVVKDPR--LITPTGKFNVY 419 (426)
T ss_dssp TTTTEEEEEECCTT--CCSEEEEEEHH
T ss_pred CCCCeEEEEECCCC--ccCCCceEeEe
Confidence 98876433211111 45688887543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=1.1e-19 Score=173.96 Aligned_cols=260 Identities=17% Similarity=0.177 Sum_probs=193.8
Q ss_pred ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCcEEEEEeeecccccccceeeeeeeccC
Q 008939 148 NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKD 225 (548)
Q Consensus 148 ~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 225 (548)
+.++ +|.|||+++++ .+..+... ..+..++|+|+ +++|+ ++..++.|++||+.+. + ......
T Consensus 8 ~~~~~~v~v~D~~t~~--~~~~i~~g-~~p~~va~spd---G~~l~v~~~~~~~i~v~d~~t~-----~-~~~~~~---- 71 (301)
T d1l0qa2 8 NSESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPD---GTKVYVANAHSNDVSIIDTATN-----N-VIATVP---- 71 (301)
T ss_dssp ETTTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT---SSEEEEEEGGGTEEEEEETTTT-----E-EEEEEE----
T ss_pred ECCCCEEEEEECCCCe--EEEEEECC-CCceEEEEeCC---CCEEEEEECCCCEEEEEECCCC-----c-eeeeee----
Confidence 4444 99999999854 77777754 57899999999 77775 5567899999999862 2 222221
Q ss_pred CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEE
Q 008939 226 GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSI 305 (548)
Q Consensus 226 ~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 305 (548)
....+..+.|++++..+++++..++.+++|+.... ..+..+. +...+.++
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~-~~~~~~~~ 121 (301)
T d1l0qa2 72 ---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------------------------TVAGTVK-TGKSPLGL 121 (301)
T ss_dssp ---CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------------------EEEEEEE-CSSSEEEE
T ss_pred ---ccccccccccccccccccccccccceeeecccccc--------------------------eeeeecc-ccccceEE
Confidence 23456899999999966677778889999998752 1122222 23567889
Q ss_pred EECCCCCEEEE-EECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-CeEEEEECCCceeEEeccCCC
Q 008939 306 AFSTDGTYLAT-VGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-DLVQVWSMEDRKVVAWGEGHN 383 (548)
Q Consensus 306 ~~sp~g~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g~I~vwd~~~~~~~~~~~~h~ 383 (548)
.|+|+++.++. +..++.+.+|+..+.+.+..+..+ ..+.+++++|+++.++++..+ +.+.+|+....+....+. +.
T Consensus 122 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 199 (301)
T d1l0qa2 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred EeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccc-cc
Confidence 99999987755 456888999999999988877644 568899999999988877765 678888888877777666 44
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEE---eCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeee
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSV---GQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPV 460 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~---~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 460 (548)
..+..++|++ ++ ..++.+ ..++.|.+||+.+++++..+..
T Consensus 200 ~~~~~~~~~~-------~g------~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------------------------ 242 (301)
T d1l0qa2 200 AAPSGIAVNP-------EG------TKAYVTNVDKYFNTVSMIDTGTNKITARIPV------------------------ 242 (301)
T ss_dssp SEEEEEEECT-------TS------SEEEEEEECSSCCEEEEEETTTTEEEEEEEC------------------------
T ss_pred CCcceeeccc-------cc------cccccccccceeeeeeeeecCCCeEEEEEcC------------------------
Confidence 5677899998 87 333333 3357899999999887765433
Q ss_pred cccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEECCCeEEEEeCCCCC
Q 008939 461 GTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 461 g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s~Dg~I~iW~~~~~~ 516 (548)
...+++++|+||+ | ++++.|+.|++||+.+.+
T Consensus 243 ------------------------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 243 ------------------------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp ------------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 2457899999984 4 677889999999998765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.6e-21 Score=198.01 Aligned_cols=340 Identities=12% Similarity=-0.012 Sum_probs=215.5
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHH 221 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~ 221 (548)
-++++..++ .|.|||.++.+ .+..+..+ ..+..++|+|+ |++|++++.||.|.+||+.+... .......
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~--v~~~~~~g-~~~~~v~fSpD---G~~l~~~s~dg~v~~~d~~t~~~----~~~~~i~ 102 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYE--IKTVLDTG-YAVHISRLSAS---GRYLFVIGRDGKVNMIDLWMKEP----TTVAEIK 102 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCC--EEEEEECS-SCEEEEEECTT---SCEEEEEETTSEEEEEETTSSSC----CEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCc--EEEEEeCC-CCeeEEEECCC---CCEEEEEcCCCCEEEEEeeCCCc----eEEEEEe
Confidence 334556666 99999999855 88888866 47999999999 88999999999999999876211 1111111
Q ss_pred eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 222 YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 222 ~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
.+..|...+.+..|+|||+.+++++..++.|++||..+.. ....+....... ...--.+...
T Consensus 103 ---~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~--------------~~~~~~~~~~ 164 (432)
T d1qksa2 103 ---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTY--------------DEQEYHPEPR 164 (432)
T ss_dssp ---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECT--------------TTCCEESCCC
T ss_pred ---cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccc--------------cceeccCCCc
Confidence 1122455666777888999556788899999999998632 111111100000 0000113466
Q ss_pred eEEEEECCCCCEEE-EEECCCeEEEEeCCCCeEEEeee-ecCCceEEEEEccCCCEEEEEeC-CCeEEEEECCCceeEEe
Q 008939 302 INSIAFSTDGTYLA-TVGRDGYLRVFDYSKEQLICGGK-SYYGALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKVVAW 378 (548)
Q Consensus 302 v~~~~~sp~g~~l~-s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~~ 378 (548)
...+.++|+++.++ +...++.|.+||..+.+...... .+...+..++|+|||+++++++. ++.|.++|.++++.+..
T Consensus 165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 77899999998765 45567999999998876543322 34567889999999998777665 56899999999887766
Q ss_pred cc-----CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcc
Q 008939 379 GE-----GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA 452 (548)
Q Consensus 379 ~~-----~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (548)
+. .|........+.. .+ ....+.. .|+.|.+|+....... ..........+++++
T Consensus 245 ~~~g~~~~~~~~~~~~~~~~-------~g------~~~~~~~lg~~~v~~~~~~~~~~~---~~~~~v~~~~~~~~g--- 305 (432)
T d1qksa2 245 EDTGGQTPHPGRGANFVHPT-------FG------PVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGG--- 305 (432)
T ss_dssp EECSSSSBCCTTCEEEEETT-------TE------EEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCS---
T ss_pred eccCccccccCcccceecCC-------CC------ceecccccCCceEEeccccccccc---ccccEEEEEEEcCCC---
Confidence 54 2344444444433 33 3344443 3788999987654311 000111122333332
Q ss_pred ccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCC--eEEEEECCCeEEEEeCCCCCccccCCCCcEE--E
Q 008939 453 HWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQE--SVLTVCREGHIKIWMRPGVAESQSSSSETVL--S 528 (548)
Q Consensus 453 ~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd--~l~t~s~Dg~I~iW~~~~~~~~~~~~~~~v~--~ 528 (548)
..+.++..+...++|+..... .|.....++++ || .|++++.|+.+++|++..... ...+...++ +
T Consensus 306 ---~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~-l~~~~~~v~~~~ 374 (432)
T d1qksa2 306 ---GSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG-ITEGQPRVVQGE 374 (432)
T ss_dssp ---CCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT-CCSSCCEEEEEE
T ss_pred ---CeEEEEecCCccceeecccCC------CCCCeeeEEEE-EechhhcccccCCceEecccccccc-cCCCCCcEEEeE
Confidence 222344455666677654332 23333444554 66 499999999999999744322 223444455 8
Q ss_pred ecCCCCceEeee
Q 008939 529 TSSKDKPLLSSK 540 (548)
Q Consensus 529 ~s~d~~~l~s~~ 540 (548)
|||||++|+.+.
T Consensus 375 fS~DG~~v~~S~ 386 (432)
T d1qksa2 375 FNKDGTEVWFSV 386 (432)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999999886664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=7.8e-21 Score=192.76 Aligned_cols=301 Identities=10% Similarity=-0.001 Sum_probs=196.2
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
++++...||.|++||+.+ .+++..+. ....+..++|+|||+ +|++++.|++|++||+.+.... ..
T Consensus 34 ~~V~~~~dg~v~vwD~~t------~~~~~~l~-------~g~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~-~~ 98 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS------KKIVKVID-------TGYAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPT-KV 98 (426)
T ss_dssp EEEEETTTTEEEEEETTT------CSEEEEEE-------CCSSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCE-EE
T ss_pred EEEEEcCCCEEEEEECCC------CcEEEEEe-------CCCCeeEEEECCCCC-EEEEEeCCCCEEEEEccCCcee-EE
Confidence 456677889999999987 23333332 234689999999999 8999999999999999873210 00
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCC------
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYG------ 342 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~------ 342 (548)
. .+.....|.+.+.+++|+|||++|+++ ..++.+++||..+++++..+..|..
T Consensus 99 ~--------------------~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 158 (426)
T d1hzua2 99 A--------------------EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 158 (426)
T ss_dssp E--------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred E--------------------EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcccee
Confidence 0 011122344566778889999987554 5889999999999988776655433
Q ss_pred -----ceEEEEEccCCCEEEEEeC-CCeEEEEECCCcee-EEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 343 -----ALLCCAWSMDGKYILTGGE-DDLVQVWSMEDRKV-VAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 343 -----~v~~l~~spdg~~l~sgs~-dg~I~vwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
....+..++++..++.... .+.+.+++..+... .....++...+..+.|+| ++. +++++..
T Consensus 159 ~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~-----~~~~a~~ 226 (426)
T d1hzua2 159 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-------SHR-----YFMTAAN 226 (426)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-------TSC-----EEEEEET
T ss_pred ecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-------CCc-----EEEeeee
Confidence 3455666666665554433 45666666655442 223335788899999999 872 4556666
Q ss_pred CCCeEEEEECCCCeEEeeeecCC---CCCCceecCCCC------ccccCCeeeecccCCCCceeecCCCCceEEeecCCC
Q 008939 416 QDTRLLLWDLEMDEIVVPLRRGP---LGGSPTFSTGSQ------SAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTE 486 (548)
Q Consensus 416 ~Dg~i~lwd~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~ 486 (548)
.+..+.+||..+++.+....... ......+..... ....+..+.... .....+.....+....+.+|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~--~~~~~~~~~~~~~~~~l~g~~~ 304 (426)
T d1hzua2 227 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG--TDPKNHPQYAWKKVAELQGQGG 304 (426)
T ss_dssp TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE--CCTTTCTTTBTSEEEEEECSSS
T ss_pred cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee--ccccccccccceEeEEEecCCC
Confidence 78889999999999988776531 122222222221 111222221111 1111222334567888999999
Q ss_pred CeeEEEEeCCe--EE-------EEECCCeEEEEeCCCCCccc-----------cCCCCcEE--EecCCCCceEee
Q 008939 487 PLSGLIFTQES--VL-------TVCREGHIKIWMRPGVAESQ-----------SSSSETVL--STSSKDKPLLSS 539 (548)
Q Consensus 487 ~V~~l~fspd~--l~-------t~s~Dg~I~iW~~~~~~~~~-----------~~~~~~v~--~~s~d~~~l~s~ 539 (548)
.+..++|+||+ |+ ++..|++|+|||+.+.+... ..+...++ +|||||++|+.+
T Consensus 305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs 379 (426)
T d1hzua2 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 379 (426)
T ss_dssp CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE
Confidence 99999999985 65 35678999999988765321 12334455 799999987543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=2.1e-18 Score=164.69 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=185.3
Q ss_pred CCceeEEeCCCCCEEEE-ecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEE-EEEcCCcEEEEEeee
Q 008939 131 TSMTNTNFDGKGTYIIF-NVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQ 207 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~-~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~ 207 (548)
..+..++|+|||+++++ +..+ .|++||+.+.. .+..+..+ ..+..++|+++ +..++ .+..++.+.+|+...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 105 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAG-SSPQGVAVSPD---GKQVYVTNMASSTLSVIDTTS 105 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECS-SSEEEEEECTT---SSEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeecc-ccccccccccc---cccccccccccceeeeccccc
Confidence 44678999999998854 4444 99999999854 77777754 47899999998 55454 455667799999875
Q ss_pred cccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCC
Q 008939 208 QLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYS 287 (548)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (548)
........ +...+.++.|+|++..+++++..++.+.+|+....
T Consensus 106 ------~~~~~~~~-------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~------------------------ 148 (301)
T d1l0qa2 106 ------NTVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK------------------------ 148 (301)
T ss_dssp ------TEEEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------------
T ss_pred ------ceeeeecc-------ccccceEEEeecCCCeeeeeeccccceeeeecccc------------------------
Confidence 12222222 45667899999999966677778899999998762
Q ss_pred CCCCeeEeeecCCCeEEEEECCCCCEEEEEECC-CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CC
Q 008939 288 KSNPIARWHICQGSINSIAFSTDGTYLATVGRD-GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DD 363 (548)
Q Consensus 288 ~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg 363 (548)
..+..+. +...+..++++|++++++++..+ +.+.+|+....+....... ...+..++|+++++.++++.. ++
T Consensus 149 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~ 224 (301)
T d1l0qa2 149 --AVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (301)
T ss_dssp --EEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred --ceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceee
Confidence 1122222 23568889999999988887765 6677888887777666554 456788999999998776543 46
Q ss_pred eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 364 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 364 ~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
.|++||+.+++.+..+. +...+.+++|+| ||+ +++++++.|+.|++||+++++++.++..
T Consensus 225 ~v~v~D~~t~~~~~~~~-~~~~~~~va~sp-------dg~-----~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 225 TVSMIDTGTNKITARIP-VGPDPAGIAVTP-------DGK-----KVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEEETTTTEEEEEEE-CCSSEEEEEECT-------TSS-----EEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeecCCCeEEEEEc-CCCCEEEEEEeC-------CCC-----EEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 89999999999988877 445689999999 982 3457888899999999999999988764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=3e-19 Score=181.01 Aligned_cols=340 Identities=11% Similarity=0.035 Sum_probs=221.9
Q ss_pred CCceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEE----EecCCCCCCceE-EEEEcCCcEEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCH----AFDQDAKDGHDL-LIGLNSGDVYSVS 204 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~----~~~p~~~~~~~l-~~g~~dg~I~iwd 204 (548)
..+..++|+|||+++++++.| .+++||+.++....+..+.- ......+ +|+|+ |++| +++..++.|.+||
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-~~~~~~~~~s~~~SpD---G~~l~vs~~~~~~v~i~d 137 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWE---DKYAIAGAYWPPQYVIMD 137 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCSTTCT---TTEEEEEEEETTEEEEEE
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec-CCCCCCeEEecccCCC---CCEEEEEcCCCCeEEEEe
Confidence 358899999999999988766 99999999866444555442 2233444 45555 7765 6677899999999
Q ss_pred eeecccccccceeeeee-eccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 205 LRQQLQDVGKKLVGAHH-YNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
..+. +..+....... .......+......+.++|++..++++...++.|.+||....
T Consensus 138 ~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~-------------------- 195 (432)
T d1qksa2 138 GETL--EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL-------------------- 195 (432)
T ss_dssp TTTC--CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS--------------------
T ss_pred Cccc--cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC--------------------
Confidence 8762 11111100000 000111245667889999999856677778899999998752
Q ss_pred CCCCCCCCeeEeee-cCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEeeee-----cCCceEEEEEccCCCEE
Q 008939 284 PRYSKSNPIARWHI-CQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICGGKS-----YYGALLCCAWSMDGKYI 356 (548)
Q Consensus 284 ~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~~~~-----~~~~v~~l~~spdg~~l 356 (548)
+....+.. +...+.+++|+|+|+++++++. +..+.++|..+++.+..+.. |........+...+...
T Consensus 196 ------~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 269 (432)
T d1qksa2 196 ------NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269 (432)
T ss_dssp ------SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred ------CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCcee
Confidence 11222222 2356889999999998887775 55799999999888766542 33444555566555555
Q ss_pred EEEe-CCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 357 LTGG-EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 357 ~sgs-~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
++.. .++.|.+|+..... +..|...|....+.| ++ ..++++..+...++|+..+.......
T Consensus 270 ~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~-------~g------~~~~~~s~p~~~~lw~~~~~~~~~~~- 331 (432)
T d1qksa2 270 ATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPAL-------GG------GSLFIKTHPNSQYLYVDATLNPEAEI- 331 (432)
T ss_dssp EEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECS-------CS------CCCCEECCTTCSEEEEECTTCSSHHH-
T ss_pred cccccCCceEEeccccccc----ccccccEEEEEEEcC-------CC------CeEEEEecCCccceeecccCCCCCCe-
Confidence 5543 47899999876542 345778899999998 87 57889999999999986543221100
Q ss_pred cCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--E-EEEE----CCCeEE
Q 008939 436 RGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--V-LTVC----REGHIK 508 (548)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l-~t~s----~Dg~I~ 508 (548)
...+++ +++ ..+..+..+..+++|++.+...+ ..|...|..++|+||+ | ++.. .||.|+
T Consensus 332 ----~~sv~v-pDg------~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~ 397 (432)
T d1qksa2 332 ----SGSVAV-FDI------KAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397 (432)
T ss_dssp ----HTCEEE-EEG------GGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred ----eeEEEE-Eec------hhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEE
Confidence 111221 222 34466777888899987554333 3577789999999995 4 3332 578999
Q ss_pred EEeCCCCCccccCCCCcEEEecCCCCce
Q 008939 509 IWMRPGVAESQSSSSETVLSTSSKDKPL 536 (548)
Q Consensus 509 iW~~~~~~~~~~~~~~~v~~~s~d~~~l 536 (548)
|||-.+.++...-.... .++|+|++-
T Consensus 398 i~D~~T~k~~~~i~~~~--~~tp~G~~~ 423 (432)
T d1qksa2 398 VVDDKTLELKHVIKDER--LVTPTGKFN 423 (432)
T ss_dssp EEETTTTEEEEEECCTT--CCSEEEEEE
T ss_pred EEECCCceEEeEecCCC--ccCCCeeEE
Confidence 99988876533211111 235666653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=1.9e-19 Score=175.59 Aligned_cols=279 Identities=11% Similarity=0.021 Sum_probs=190.9
Q ss_pred EEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeeccccc
Q 008939 136 TNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 136 ~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~ 212 (548)
++|+++++++++++.+ .|.|||+++++ .+..+.. +...+.+++|+|+ +.+++++ ..++.|++||+.+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~spD---G~~l~v~~~~~~~v~~~d~~t~---- 72 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPD---NRTAYVLNNHYGDIYGIDLDTC---- 72 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTT---SSEEEEEETTTTEEEEEETTTT----
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCC--EEEEEEcCCCCCcceEEECCC---CCEEEEEECCCCcEEEEeCccC----
Confidence 5788999999998877 99999999854 7888875 3557899999999 7777554 57899999998862
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCcccccccceee
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFS 280 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 280 (548)
+.............+...+..++|+|++. +++++. .+..+.+|+...... ..
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~------------ 136 (346)
T d1jmxb_ 73 --KNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AK------------ 136 (346)
T ss_dssp --EEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BC------------
T ss_pred --eeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEeccccee-ee------------
Confidence 22222222222222344577899999999 666654 466778888765211 00
Q ss_pred eecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCE-----
Q 008939 281 VAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKY----- 355 (548)
Q Consensus 281 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~----- 355 (548)
++.. ......+..+.+++++.+++. +..+.+|++.+++.+..+..+. ....+.++|++..
T Consensus 137 ----------~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 201 (346)
T d1jmxb_ 137 ----------PVRT-FPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQ 201 (346)
T ss_dssp ----------CSEE-EECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCC
T ss_pred ----------EEEe-eeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEe
Confidence 0111 111244566777788776654 3568999999998887765432 2334445554432
Q ss_pred ---------------------EEEEeCCCeEEEEECCCceeEE-eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEE
Q 008939 356 ---------------------ILTGGEDDLVQVWSMEDRKVVA-WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGS 413 (548)
Q Consensus 356 ---------------------l~sgs~dg~I~vwd~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s 413 (548)
++++..+..+.+||+.++.... .+..|...+..+.+++ ++ ..++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~ 268 (346)
T d1jmxb_ 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP-------KD------PNQIY 268 (346)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS-------SC------TTEEE
T ss_pred cCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC-------CC------CEEEE
Confidence 2333445568888888876543 4456888899999988 66 34554
Q ss_pred EeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEE
Q 008939 414 VGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIF 493 (548)
Q Consensus 414 ~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~f 493 (548)
.. ++.|.+||+.+++.+..+.. ...+.+++|
T Consensus 269 ~~-~~~v~v~d~~~~~~~~~~~~------------------------------------------------~~~~~~va~ 299 (346)
T d1jmxb_ 269 GV-LNRLAKYDLKQRKLIKAANL------------------------------------------------DHTYYCVAF 299 (346)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC------------------------------------------------SSCCCEEEE
T ss_pred ec-CCeEEEEECCCCcEEEEEcC------------------------------------------------CCCEEEEEE
Confidence 44 46899999999987765543 345889999
Q ss_pred eCCe--EEEEECCCeEEEEeCCCCC
Q 008939 494 TQES--VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 494 spd~--l~t~s~Dg~I~iW~~~~~~ 516 (548)
+||+ |++++.|+.|++||..+.+
T Consensus 300 s~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 300 DKKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp CSSSSCEEEESBSSEEEEEETTTTE
T ss_pred cCCCCEEEEEeCCCcEEEEECccCC
Confidence 9985 9999999999999998754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=3.7e-18 Score=165.58 Aligned_cols=236 Identities=15% Similarity=0.167 Sum_probs=168.8
Q ss_pred CEEEEecCC-eEEEEEccCCCCCCeEEEecC--CCCceEEEecCCCCCCceEE-EEEcCCcEEEEEeeecccccccceee
Q 008939 143 TYIIFNVGD-AIFISDLNSQDKDPIKSIHFS--NSNPVCHAFDQDAKDGHDLL-IGLNSGDVYSVSLRQQLQDVGKKLVG 218 (548)
Q Consensus 143 ~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~--~~~~~~~~~~p~~~~~~~l~-~g~~dg~I~iwdl~~~~~~~~~~~~~ 218 (548)
+++++++.+ +|+|||+++.. .+..+..+ ...+..++|+|+ +++|+ ++..++.|.+||+.+ ++ +..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~--~~~~i~~~~~~~~~~~i~~spD---g~~l~v~~~~~~~v~v~D~~t-----~~-~~~ 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESLVKIDLVT-----GE-TLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEEEEEETTT-----CC-EEE
T ss_pred eEEEEEcCCCEEEEEECCCCe--EEEEEECCCCCCCccEEEECCC---CCEEEEEECCCCeEEEEECCC-----Cc-EEE
Confidence 467777766 99999999844 78777653 456889999999 77775 556789999999986 22 222
Q ss_pred eeeeccCCcccCcceEEEEEecCCCcEEEEEeC------------CCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 219 AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA------------DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 219 ~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
..... ....+...+..++|+|++. .++++.. +..+.+||....
T Consensus 71 ~~~~~-~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------------------- 125 (337)
T d1pbyb_ 71 RIDLS-TPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETL----------------------- 125 (337)
T ss_dssp EEECC-BTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------------------
T ss_pred EEecC-CCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCC-----------------------
Confidence 11111 1112345567899999999 6666653 466777777652
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee-----------------------------
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG----------------------------- 337 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------------- 337 (548)
..+..+. +...+.+++|+|+|+++++++.+ +.+||..+++.+..+
T Consensus 126 ---~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
T d1pbyb_ 126 ---SRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp ---EEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred ---eEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceee
Confidence 1112222 23557788899999888887544 667777665443322
Q ss_pred -------------------------------------eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 338 -------------------------------------KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 338 -------------------------------------~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
..+...+.+++++|++.+++.+ ++.|++||+++++.+..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~ 277 (337)
T d1pbyb_ 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc
Confidence 1233345566778888877665 5899999999999998886
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 381 GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 381 ~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+...+.+++|+| || .+|++++.|+.|++||.++.+.+..+..
T Consensus 278 -~~~~~~~~~~s~-------dG------~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 278 -LPHSYYSVNVST-------DG------STVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp -CSSCCCEEEECT-------TS------CEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred -CCCCEEEEEECC-------CC------CEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 677889999999 99 7899999999999999999999988865
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=4e-18 Score=165.35 Aligned_cols=258 Identities=12% Similarity=0.014 Sum_probs=184.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeec--CCCeEEEEECCCCCEEE-EEECCC
Q 008939 245 AFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHIC--QGSINSIAFSTDGTYLA-TVGRDG 321 (548)
Q Consensus 245 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~-s~~~dg 321 (548)
+|++++.|++|+|||+.+. +.+..+..+ ...+.+++|+|||++|+ +++.++
T Consensus 3 ~~vt~~~d~~v~v~D~~s~--------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~ 56 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKM--------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56 (337)
T ss_dssp EEEEEETTTEEEEEETTTT--------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred EEEEEcCCCEEEEEECCCC--------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCC
Confidence 8999999999999999862 233444332 34577899999999875 556789
Q ss_pred eEEEEeCCCCeEEEeeeecCC-----ceEEEEEccCCCEEEEEe------------CCCeEEEEECCCceeEEeccCCCC
Q 008939 322 YLRVFDYSKEQLICGGKSYYG-----ALLCCAWSMDGKYILTGG------------EDDLVQVWSMEDRKVVAWGEGHNS 384 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~sgs------------~dg~I~vwd~~~~~~~~~~~~h~~ 384 (548)
.|.+||+.+++++..+..+.. .+..++|+||+++++++. .+..+.+||..+++.+..+. +..
T Consensus 57 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 135 (337)
T d1pbyb_ 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APR 135 (337)
T ss_dssp EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCS
T ss_pred eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccC
Confidence 999999999999887765432 345789999999988776 46789999999999888887 456
Q ss_pred CeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcc----c-------
Q 008939 385 WVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA----H------- 453 (548)
Q Consensus 385 ~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------- 453 (548)
.+..++|+| || .++++++. .+.+||..+++....+..........+.+++... .
T Consensus 136 ~~~~~~~s~-------dg------~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 136 QITMLAWAR-------DG------SKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp SCCCEEECT-------TS------SCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred CceEEEEcC-------CC------CEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence 688999999 99 57777764 4788999999998888765444444444433210 0
Q ss_pred ------c-CCeeeecccCCCCceeecCCCCceE-EeecCCCCeeEEEEeCCeEEEEECCCeEEEEeCCCCCcccc---CC
Q 008939 454 ------W-DNVCPVGTLQPAPSMRDVPKLSPLV-AHRVHTEPLSGLIFTQESVLTVCREGHIKIWMRPGVAESQS---SS 522 (548)
Q Consensus 454 ------~-d~~~~~g~~~~~~~~~d~~~~~~~~-~~~~h~~~V~~l~fspd~l~t~s~Dg~I~iW~~~~~~~~~~---~~ 522 (548)
+ .........+..+..|+........ .+..|...+..+.++|+.....+.|+.|++||+.+...... .+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 280 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH 280 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSS
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEcCCC
Confidence 0 0111222233456667777666443 34567778888899998633344579999999988763322 33
Q ss_pred CCcEEEecCCCCceEeeecccc
Q 008939 523 SETVLSTSSKDKPLLSSKVVTS 544 (548)
Q Consensus 523 ~~~v~~~s~d~~~l~s~~~~g~ 544 (548)
...-++|+|||++|+++...|.
T Consensus 281 ~~~~~~~s~dG~~l~v~~~~~~ 302 (337)
T d1pbyb_ 281 SYYSVNVSTDGSTVWLGGALGD 302 (337)
T ss_dssp CCCEEEECTTSCEEEEESBSSE
T ss_pred CEEEEEECCCCCEEEEEeCCCc
Confidence 3344589999999999876654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=3.1e-15 Score=147.51 Aligned_cols=306 Identities=7% Similarity=-0.085 Sum_probs=182.9
Q ss_pred cCCCCCCceeEEeCCCCCEEEEecC------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc---
Q 008939 126 ASSSSTSMTNTNFDGKGTYIIFNVG------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN--- 196 (548)
Q Consensus 126 ~~~h~~~v~~~~~~~~g~~l~~~~~------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~--- 196 (548)
...+..++..++++|||+.+++... ..|++||..+++ .+..+..+ ....++|+|+ |.+|+++..
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--~~~~~~~~--~~~~~a~SpD---G~~l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNGG--FLPNPVAAHS---GSEFALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--EEEEEeCC--CCccEEEcCC---CCEEEEEeecCC
Confidence 3345667778999999999876421 268999988754 77776543 3447999999 778888754
Q ss_pred -------CCcEEEEEeeecccccccceeeeeeeccCC-cccCcceEEEEEecCCCcEEEEE--eCCCcEEEEEcCCCCCC
Q 008939 197 -------SGDVYSVSLRQQLQDVGKKLVGAHHYNKDG-SVNNSRCTSVTWVPGGDGAFVVG--HADGNLYVYEKSKDGAG 266 (548)
Q Consensus 197 -------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~~l~s~--~~dg~v~vwd~~~~~~~ 266 (548)
++.|.+||+.+. + +.......... .........+.|++++. .+++. ..++.+.+|+.....
T Consensus 89 ~~~~~~~~~~v~v~D~~t~-----~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~-- 159 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTF-----L-PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVVQGGSS-- 159 (373)
T ss_pred cccccccceEEEEEECCCC-----c-EEEEEecCCcceeEeccCCCcEEEEeCCC-cEEEEEEcCCCceEEeeccCCe--
Confidence 577999999872 1 11111110000 00112235678899888 44333 345678888876411
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEE-EEEECCCeEEEEeCCCCeEEEeeeecC----
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYL-ATVGRDGYLRVFDYSKEQLICGGKSYY---- 341 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~---- 341 (548)
...+.....++.|+|+++.+ ++.+.|+.+.+||...++.......+.
T Consensus 160 ----------------------------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 211 (373)
T d2madh_ 160 ----------------------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA 211 (373)
T ss_pred ----------------------------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence 11122446688999988754 678899999999999887765543321
Q ss_pred --CceEEEEEccCCCEEEEEeCCCeEEEEECCCceeE--EeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC
Q 008939 342 --GALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVV--AWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD 417 (548)
Q Consensus 342 --~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D 417 (548)
.....+.+.+++. ++..+.++.+.+|+....... ..+..+...+..+.+.| .+ ...+..+.|
T Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~d 277 (373)
T d2madh_ 212 QNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP-------GG------WQQVAYLKS 277 (373)
T ss_pred ccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeecc-------Cc------ceeeEEecC
Confidence 2234456666664 455567899999999876532 33334444444444444 22 223333333
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES 497 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~ 497 (548)
+....+-...+.... .......+.+||..+.+.+..+. +...+..++|+||+
T Consensus 278 ~~~~~~~~~~~~~~~---------------------------~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG 329 (373)
T d2madh_ 278 SDGIYLLTSEQSAWK---------------------------LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDG 329 (373)
T ss_pred CCeEEEecCCCceEE---------------------------eecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCC
Confidence 333222221111110 11112223344444444444332 45668899999983
Q ss_pred ----EEEEECCCeEEEEeCCCCCc
Q 008939 498 ----VLTVCREGHIKIWMRPGVAE 517 (548)
Q Consensus 498 ----l~t~s~Dg~I~iW~~~~~~~ 517 (548)
+++++.|+.|++||+.++++
T Consensus 330 ~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 330 GPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CEEEEEEeCCCCeEEEEECCCCCE
Confidence 46889999999999988774
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=3.8e-17 Score=158.92 Aligned_cols=266 Identities=11% Similarity=-0.026 Sum_probs=185.1
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCCEE
Q 008939 236 VTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGTYL 314 (548)
Q Consensus 236 l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l 314 (548)
++|+++++ +|++++.|++|.+||+.+. +.+..+.. |...+.+++|+|||+++
T Consensus 2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~--------------------------~~~~t~~~~~~~~p~~l~~spDG~~l 54 (346)
T d1jmxb_ 2 PALKAGHE-YMIVTNYPNNLHVVDVASD--------------------------TVYKSCVMPDKFGPGTAMMAPDNRTA 54 (346)
T ss_dssp CCCCTTCE-EEEEEETTTEEEEEETTTT--------------------------EEEEEEECSSCCSSCEEEECTTSSEE
T ss_pred ccCCCCCc-EEEEEcCCCEEEEEECCCC--------------------------CEEEEEEcCCCCCcceEEECCCCCEE
Confidence 46788888 9999999999999999872 33444543 34568899999999987
Q ss_pred EE-EECCCeEEEEeCCCCeEEEeeeecC------CceEEEEEccCCCEEEEEe------------CCCeEEEEECCCcee
Q 008939 315 AT-VGRDGYLRVFDYSKEQLICGGKSYY------GALLCCAWSMDGKYILTGG------------EDDLVQVWSMEDRKV 375 (548)
Q Consensus 315 ~s-~~~dg~v~vwd~~~~~~~~~~~~~~------~~v~~l~~spdg~~l~sgs------------~dg~I~vwd~~~~~~ 375 (548)
++ +..++.|.+||+.+++.+..+.... ..+..++|+|||+++++++ .+..+.+||..+++.
T Consensus 55 ~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 55 4578999999999999887665322 2356789999999988765 477899999988776
Q ss_pred EEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCcc-
Q 008939 376 VAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSA- 452 (548)
Q Consensus 376 ~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 452 (548)
...+.. ....+..+.+.+ ++ +++++ +..+.+||+.+++.+..+..........+++++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (346)
T d1jmxb_ 135 AKPVRTFPMPRQVYLMRAAD-------DG------SLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198 (346)
T ss_dssp BCCSEEEECCSSCCCEEECT-------TS------CEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred eeEEEeeeccCceEEEEecC-------CC------EEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence 554432 234456666766 66 34443 356899999999999888776555666666554311
Q ss_pred ---ccCCee----------------eecccCCCCceeecCCCCce-EEeecCCCCeeEEEEeCCe--EEEEECCCeEEEE
Q 008939 453 ---HWDNVC----------------PVGTLQPAPSMRDVPKLSPL-VAHRVHTEPLSGLIFTQES--VLTVCREGHIKIW 510 (548)
Q Consensus 453 ---~~d~~~----------------~~g~~~~~~~~~d~~~~~~~-~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW 510 (548)
.....+ ........+..|+....... .....|...+..+.++++. ++.. .++.|++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~ 277 (346)
T d1jmxb_ 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-VLNRLAKY 277 (346)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-EESEEEEE
T ss_pred EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe-cCCeEEEE
Confidence 001111 11222344666777766654 3445688889999998863 4444 45689999
Q ss_pred eCCCCCccc---cCCCCcEEEecCCCCceEeeeccccc
Q 008939 511 MRPGVAESQ---SSSSETVLSTSSKDKPLLSSKVVTSS 545 (548)
Q Consensus 511 ~~~~~~~~~---~~~~~~v~~~s~d~~~l~s~~~~g~~ 545 (548)
|....+... .++...-++|||||++|+++...|.+
T Consensus 278 d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v 315 (346)
T d1jmxb_ 278 DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315 (346)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred ECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 998776322 23444456999999999999876654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.2e-15 Score=147.63 Aligned_cols=275 Identities=13% Similarity=0.145 Sum_probs=178.5
Q ss_pred EEecCC-eEEEEEccCCCC-CCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CCcEEEEEeeecccccccceeeeeee
Q 008939 146 IFNVGD-AIFISDLNSQDK-DPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 146 ~~~~~d-~v~vwd~~~~~~-~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
+++..+ .|+||+++.... ..+..+ -++..+..++|+|+ +++|+++.. ++.|++|++.... ..........
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spD---G~~L~v~~~~d~~i~~~~i~~~~--~~~~~~~~~~- 80 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPD---KRYLYVGVRPEFRVLAYRIAPDD--GALTFAAESA- 80 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTT---SSEEEEEETTTTEEEEEEECTTT--CCEEEEEEEE-
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCC---CCEEEEEECCCCeEEEEEEeCCC--CcEEEeeecc-
Confidence 445444 999999986431 122333 36789999999999 778866665 7999999987521 1111111111
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCC
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGS 301 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 301 (548)
+...+..++|+|+++ +|++++ .++.|.+|+...... ........+...
T Consensus 81 ------~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~------------------------~~~~~~~~~~~~ 129 (333)
T d1ri6a_ 81 ------LPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLP------------------------VGVVDVVEGLDG 129 (333)
T ss_dssp ------CSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEE------------------------EEEEEEECCCTT
T ss_pred ------cCCCceEEEEcCCCC-EEeecccCCCceeeeccccccc------------------------eecccccCCCcc
Confidence 345677899999999 566655 577899998765210 111222334567
Q ss_pred eEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEe------eeecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCc
Q 008939 302 INSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICG------GKSYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDR 373 (548)
Q Consensus 302 v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~------~~~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~ 373 (548)
+.++.|+|++++++.++. +..+.+|+......... ..........++|++++.+++... ..+...+|+....
T Consensus 130 ~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 130 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred ceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 889999999998888774 46799999876532211 112334568899999999876654 5667888886542
Q ss_pred e----eEEec---c---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCc
Q 008939 374 K----VVAWG---E---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSP 443 (548)
Q Consensus 374 ~----~~~~~---~---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~ 443 (548)
. ....+ . ........+++++ |+. ..++.+..++.+.+|++........+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 270 (333)
T d1ri6a_ 210 HGNIECVQTLDMMPENFSDTRWAADIHITP-------DGR-----HLYACDRTASLITVFSVSEDGSVLSKEG------- 270 (333)
T ss_dssp TSCCEEEEEEECSCTTCCSCCCEEEEEECT-------TSS-----EEEEEETTTTEEEEEEECTTSCCEEEEE-------
T ss_pred ccceeeeeeeeeeecCCCccccceeEEEec-------ccC-----ceeeecccCCeEEEEEEcCCCCEEEEEE-------
Confidence 1 11111 1 2345667888998 873 4566677788999999876543322221
Q ss_pred eecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEE-ECCCeEEEEeCCC
Q 008939 444 TFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTV-CREGHIKIWMRPG 514 (548)
Q Consensus 444 ~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~-s~Dg~I~iW~~~~ 514 (548)
...+...+.+++|+||+ |+++ ..++.|++|++..
T Consensus 271 -------------------------------------~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 271 -------------------------------------FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp -------------------------------------EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred -------------------------------------EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 11234557889999984 5544 5679999997643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.3e-15 Score=143.55 Aligned_cols=271 Identities=11% Similarity=0.092 Sum_probs=173.0
Q ss_pred eEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCC
Q 008939 190 DLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSS 269 (548)
Q Consensus 190 ~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~ 269 (548)
.++++..++.|++|++... ....+..... +...+..|+|+|||+.+++++..|+.|++|++........
T Consensus 6 v~v~~~~~~~I~v~~~~~~---~~l~~~~~~~-------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~- 74 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHE---GALTLTQVVD-------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT- 74 (333)
T ss_dssp EEEEEGGGTEEEEEEECTT---SCEEEEEEEE-------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-
T ss_pred EEEECCCCCcEEEEEEcCC---CCeEEEEEEc-------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-
Confidence 3566678999999998752 1112222222 6788999999999994445566689999999976322110
Q ss_pred cccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeCCCCeEEEe--eeecCCceEE
Q 008939 270 FPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR-DGYLRVFDYSKEQLICG--GKSYYGALLC 346 (548)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~~~~~~~~~--~~~~~~~v~~ 346 (548)
+.....+...+..++|+|||++|++++. ++.+.+|+......... ...+...+.+
T Consensus 75 ----------------------~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (333)
T d1ri6a_ 75 ----------------------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS 132 (333)
T ss_dssp ----------------------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCC
T ss_pred ----------------------EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceE
Confidence 1111122356778999999999998875 67899999876654333 3446667889
Q ss_pred EEEccCCCEEEEEeC-CCeEEEEECCCceeEE------eccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCe
Q 008939 347 CAWSMDGKYILTGGE-DDLVQVWSMEDRKVVA------WGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTR 419 (548)
Q Consensus 347 l~~spdg~~l~sgs~-dg~I~vwd~~~~~~~~------~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~ 419 (548)
+.++|+++++++++. +..|.+|+........ ....+......++|++ ++. ..+.+....+.
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~-------~~~-----~~~~~~~~~~~ 200 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-------NEQ-----YAYCVNELNSS 200 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-------TSS-----EEEEEETTTTE
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-------cce-----eEEeeccccCc
Confidence 999999998887764 5679999987643221 1123456678899998 762 34555556778
Q ss_pred EEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--
Q 008939 420 LLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES-- 497 (548)
Q Consensus 420 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~-- 497 (548)
..+|++........... .+...+. ..........++++++.
T Consensus 201 ~~v~~~~~~~~~~~~~~-------------------------------~~~~~~~------~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 201 VDVWELKDPHGNIECVQ-------------------------------TLDMMPE------NFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEESSCTTSCCEEEE-------------------------------EEECSCT------TCCSCCCEEEEEECTTSSE
T ss_pred eEEEeecccccceeeee-------------------------------eeeeeec------CCCccccceeEEEecccCc
Confidence 88888654321111000 0000000 00123456778899974
Q ss_pred -EEEEECCCeEEEEeCCCCCcccc-------CCCCcEEEecCCCCceEeeecc
Q 008939 498 -VLTVCREGHIKIWMRPGVAESQS-------SSSETVLSTSSKDKPLLSSKVV 542 (548)
Q Consensus 498 -l~t~s~Dg~I~iW~~~~~~~~~~-------~~~~~v~~~s~d~~~l~s~~~~ 542 (548)
++.+..++.+.+|++........ .....-++|+|||++|++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~ 296 (333)
T d1ri6a_ 244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 296 (333)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence 56677889999999765442211 1122345899999998887644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=5.6e-15 Score=144.37 Aligned_cols=302 Identities=9% Similarity=-0.033 Sum_probs=177.2
Q ss_pred CceeEEeCCCCCEEEEec-----CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------
Q 008939 132 SMTNTNFDGKGTYIIFNV-----GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL---------- 195 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~-----~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~---------- 195 (548)
++...+.+|||+.+++.. .. .|+|||..+++ .+..+... ....++|+|+ +++|++..
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~~~g--~~~~~a~SpD---g~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGG--FLPNPVVADD---GSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEEC--SSCEEEECTT---SSCEEEEEEEEEETTEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEEECC--CCCceEEcCC---CCEEEEEeCCCccccccC
Confidence 344456689999987643 22 79999999854 77777644 3346999999 77787653
Q ss_pred cCCcEEEEEeeecccccccceeeeeeecc-CCcccCcceEEEEEecCCCcEEEEEe--CCCcEEEEEcCCCCCCCCCccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNK-DGSVNNSRCTSVTWVPGGDGAFVVGH--ADGNLYVYEKSKDGAGDSSFPV 272 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~ 272 (548)
.++.|.+||+.+. +......... ...........++|+|++. .++++. .+..+++|+..... ....+..
T Consensus 76 ~d~~v~v~D~~t~------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 147 (355)
T d2bbkh_ 76 RTDYVEVFDPVTL------LPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKA-FKRMLDV 147 (355)
T ss_dssp EEEEEEEECTTTC------CEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTE-EEEEEEC
T ss_pred CCCEEEEEECCCC------CEEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCc-EeeEEec
Confidence 4788999998862 2222211111 1111233456789999999 555553 46788999987621 1100000
Q ss_pred ccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEEEeeeecCCceEEEEEcc
Q 008939 273 IKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSM 351 (548)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~sp 351 (548)
.. .... ........+.+++|++.++... .++.+.+++...... .+...+....+.+
T Consensus 148 ~~----------------~~~~--~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 204 (355)
T d2bbkh_ 148 PD----------------CYHI--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQ 204 (355)
T ss_dssp CS----------------EEEE--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEET
T ss_pred CC----------------cceE--eecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccC
Confidence 00 0000 0012334456667766555432 344455555543322 2333455667888
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeE--EeccCCC----------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC--
Q 008939 352 DGKYILTGGEDDLVQVWSMEDRKVV--AWGEGHN----------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD-- 417 (548)
Q Consensus 352 dg~~l~sgs~dg~I~vwd~~~~~~~--~~~~~h~----------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D-- 417 (548)
++..++.++.++.+++|++..++.. .....+. .....++++| |+ ..++....+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------d~------~~~~~~~~~~~ 271 (355)
T d2bbkh_ 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-------AL------DRIYLLVDQRD 271 (355)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-------TT------TEEEEEEEECC
T ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-------CC------CeEEEEeccCC
Confidence 8889999999999999999887542 2222222 1223466666 66 233322221
Q ss_pred --------CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCee
Q 008939 418 --------TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLS 489 (548)
Q Consensus 418 --------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~ 489 (548)
..|.+||+.+++.+..+.. ...+.
T Consensus 272 ~~~~~~~~~~v~v~d~~t~~~~~~~~~------------------------------------------------~~~~~ 303 (355)
T d2bbkh_ 272 EWRHKTASRFVVVLDAKTGERLAKFEM------------------------------------------------GHEID 303 (355)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEE------------------------------------------------EEEEC
T ss_pred ceeecCCCCeEEEEeCCCCcEEEEecC------------------------------------------------CCCEE
Confidence 3567777776665544322 23478
Q ss_pred EEEEeCCe----EEEEECCCeEEEEeCCCCCccc----cCCCCcEEEecCC
Q 008939 490 GLIFTQES----VLTVCREGHIKIWMRPGVAESQ----SSSSETVLSTSSK 532 (548)
Q Consensus 490 ~l~fspd~----l~t~s~Dg~I~iW~~~~~~~~~----~~~~~~v~~~s~d 532 (548)
+++|+||+ +++++.|+.|++||+.+++... .++...++.+.++
T Consensus 304 ~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 304 SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 99999973 4667789999999998876321 2344445444443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=1.3e-14 Score=141.77 Aligned_cols=248 Identities=17% Similarity=0.088 Sum_probs=163.1
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEEc
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGLN 196 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~~ 196 (548)
.++|+|||++|++.. ++.|++||+.++. ++..+..+. ..+..++|+|+ +..++++..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~ 125 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPD---GKTLLFYQF 125 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTT---SSEEEEEEC
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEecC---CCeeEEecC
Confidence 689999999887643 2389999999854 666665432 34567899998 777777654
Q ss_pred --CCcEEEEEeeecccccccceeeeeeeccC-CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccc
Q 008939 197 --SGDVYSVSLRQQLQDVGKKLVGAHHYNKD-GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVI 273 (548)
Q Consensus 197 --dg~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 273 (548)
+..+.+|+.... +.......... ..........+.+++++..+++....++.+.+++......
T Consensus 126 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------- 191 (355)
T d2bbkh_ 126 SPAPAVGVVDLEGK------AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------- 191 (355)
T ss_dssp SSSCEEEEEETTTT------EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------
T ss_pred CCCceeeeeecCCC------cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc--------
Confidence 456889988752 11111110000 0001223344566666663333344445555555443110
Q ss_pred cccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe--eeec----------C
Q 008939 274 KDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--GKSY----------Y 341 (548)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~----------~ 341 (548)
.+...+....+.+++..++.++.++.+.+|++..++.... ...+ .
T Consensus 192 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 248 (355)
T d2bbkh_ 192 -----------------------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 248 (355)
T ss_dssp -----------------------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred -----------------------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeec
Confidence 0113344566778888889999999999999987754321 1111 1
Q ss_pred CceEEEEEccCCCEEEEEeCC----------CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEE
Q 008939 342 GALLCCAWSMDGKYILTGGED----------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRF 411 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sgs~d----------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l 411 (548)
.....+++++++..++....+ ..|.+||+.+++.+..+. +...+.+++|+| ||+ ..++
T Consensus 249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-------DG~----~~l~ 316 (355)
T d2bbkh_ 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-------DEK----PLLY 316 (355)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-------SSS----CEEE
T ss_pred cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-------CCC----eEEE
Confidence 233458899999988776543 369999999999888876 456688999999 982 0256
Q ss_pred EEEeCCCeEEEEECCCCeEEeeeec
Q 008939 412 GSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 412 ~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++++.|+.|.+||+++++.+..+..
T Consensus 317 v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 317 ALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEECCCCEEEEEECCCCCEEEEEeC
Confidence 7778899999999999999988864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.64 E-value=1.6e-13 Score=135.01 Aligned_cols=248 Identities=15% Similarity=0.017 Sum_probs=165.2
Q ss_pred eEEeCCCCCEEEEecC-----------CeEEEEEccCCCCCCeEEEecCCC-------CceEEEecCCCCCCceEEEEE-
Q 008939 135 NTNFDGKGTYIIFNVG-----------DAIFISDLNSQDKDPIKSIHFSNS-------NPVCHAFDQDAKDGHDLLIGL- 195 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~-----------d~v~vwd~~~~~~~~i~~~~~~~~-------~~~~~~~~p~~~~~~~l~~g~- 195 (548)
.++|+|||+++++... +.|+|||+.+.+ ++..+..+.. .+..+.|+++ +..+++..
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~~~v~~~ 144 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTPN---NADLLFFQF 144 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc--EEEEEecCCcceeEeccCCCcEEEEeC---CCcEEEEEE
Confidence 5899999999988642 379999999854 6666655443 2355677787 44555544
Q ss_pred -cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCccccc
Q 008939 196 -NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIK 274 (548)
Q Consensus 196 -~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 274 (548)
.++.+.+|+... .+... +.....++.|+|+++..+++.+.|+.+.+|+...............
T Consensus 145 ~~~~~~~~~~~~~------~~~~~----------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~ 208 (373)
T d2madh_ 145 AAGPAVGLVVQGG------SSDDQ----------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred cCCCceEEeeccC------CeEEE----------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc
Confidence 345677787654 11111 3445678999999987888999999999999876221110000000
Q ss_pred ccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe--eeec----------CC
Q 008939 275 DQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--GKSY----------YG 342 (548)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~----------~~ 342 (548)
...+......+.+++++.+ +..+.++.+.+|+......... ...+ ..
T Consensus 209 --------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (373)
T d2madh_ 209 --------------------TAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred --------------------ccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC
Confidence 0001122344556666644 4556788999999887654322 1111 12
Q ss_pred ceEEEEEccCCCEE----------EEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 343 ALLCCAWSMDGKYI----------LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 343 ~v~~l~~spdg~~l----------~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
....+++++++..+ +....++.|.+||+.+++.+..+. +...+..++|+| ||+ ..+++
T Consensus 268 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-------DG~----~~l~v 335 (373)
T d2madh_ 268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-------DGG----PDLYA 335 (373)
T ss_pred cceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-------CCC----EEEEE
Confidence 23445666666544 345567789999999999988876 777899999999 982 02457
Q ss_pred EEeCCCeEEEEECCCCeEEeeeec
Q 008939 413 SVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+++.|+.|++||+.+++.+..+..
T Consensus 336 t~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 336 LSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred EeCCCCeEEEEECCCCCEEEEECC
Confidence 889999999999999999998864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=4e-13 Score=132.18 Aligned_cols=252 Identities=11% Similarity=-0.004 Sum_probs=163.5
Q ss_pred eEEeCCCCCEEEEec-----------CCeEEEEEccCCCCCCeEEEecCC-------CCceEEEecCCCCCCceEEEEE-
Q 008939 135 NTNFDGKGTYIIFNV-----------GDAIFISDLNSQDKDPIKSIHFSN-------SNPVCHAFDQDAKDGHDLLIGL- 195 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~-----------~d~v~vwd~~~~~~~~i~~~~~~~-------~~~~~~~~~p~~~~~~~l~~g~- 195 (548)
.++|+|||+.|++.. .+.|++||..+.. ++..+..+. ..+..++|+|+ +++|+++.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~g~~p~~~a~SpD---Gk~l~va~~ 143 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCAS---SACLLFFLF 143 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTT---SSCEEEEEC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecccCCccceEECCC---CCEEEEEeC
Confidence 589999999988754 2379999999854 777765432 34567999999 77788776
Q ss_pred cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccc
Q 008939 196 NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKD 275 (548)
Q Consensus 196 ~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 275 (548)
.++.|.+||+.. .++...... +. +..+.|.+...++..+.||.+.+|++...+........
T Consensus 144 ~~~~v~~~d~~~------~~~~~~~~~------~~----~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--- 204 (368)
T d1mdah_ 144 GSSAAAGLSVPG------ASDDQLTKS------AS----CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--- 204 (368)
T ss_dssp SSSCEEEEEETT------TEEEEEEEC------SS----CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---
T ss_pred CCCeEEEEECCC------CcEeEEeec------cC----cceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---
Confidence 578999999986 222222211 11 11223444447788888999999988754322211100
Q ss_pred cceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEee--ee----------cCCc
Q 008939 276 QTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGG--KS----------YYGA 343 (548)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~--~~----------~~~~ 343 (548)
..+..+...+....+.+++..+.+. .+.+.++++..++..... .. ....
T Consensus 205 -----------------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (368)
T d1mdah_ 205 -----------------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp -----------------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred -----------------ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCC
Confidence 0011122344556777777655543 455666666554433211 11 1122
Q ss_pred eEEEEEccCCCEEEEEeCC---------CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 344 LLCCAWSMDGKYILTGGED---------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 344 v~~l~~spdg~~l~sgs~d---------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
...+++++++..+++...+ ..|.+||..+++.+..+. +...+..++|+| ||+. .++++.
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-------DG~~----~ly~s~ 333 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQ-------DGAS----DNYANS 333 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECC-------SSSC----EEEEEE
T ss_pred ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECC-------CCCE----EEEEEe
Confidence 3457899999877665322 359999999999888876 456788999999 9821 356778
Q ss_pred eCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 415 GQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
..|+.|.+||..+++.+..++......
T Consensus 334 ~~~~~v~v~D~~tgk~~~~i~~g~~P~ 360 (368)
T d1mdah_ 334 AGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp TTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCCC
Confidence 889999999999999999887643333
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=8.8e-12 Score=122.37 Aligned_cols=277 Identities=6% Similarity=-0.077 Sum_probs=153.3
Q ss_pred eEEeCCCCCE--EEEec---CC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE----------cCC
Q 008939 135 NTNFDGKGTY--IIFNV---GD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL----------NSG 198 (548)
Q Consensus 135 ~~~~~~~g~~--l~~~~---~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~----------~dg 198 (548)
.++..++++. ++... +. .+++||..+++ .+..+..+.. ..++|+|+ +..|++.. .++
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~--~~~~~~~~~~--~~~a~spD---g~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV--TLGHSLGAFL--SLAVAGHS---GSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEECTT--CEEEECTT---SSCEEEEEEEETTTTSSSEEE
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCc--EEEEEeCCCC--CcceECCC---CCEEEEEcccCccccccccCC
Confidence 3444566664 33322 22 57777877744 6666665443 36899999 77788765 367
Q ss_pred cEEEEEeeecccccccceeeeeeeccC-CcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKKLVGAHHYNKD-GSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.|.+||..+. + .......... ..........++|+|||+.++++...++.+.+||+.+..
T Consensus 97 ~v~v~D~~t~-----~-~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~------------- 157 (368)
T d1mdah_ 97 YVEVFDPVTF-----L-PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS------------- 157 (368)
T ss_dssp EEEEECTTTC-----C-EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-------------
T ss_pred eEEEEECCCC-----c-EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-------------
Confidence 7999998762 2 2211111110 001122345789999999444444567999999998621
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECC-CCCEEEEEECCCeEEEEeCCCCeEEEe------eeecCCceEEEEEc
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFST-DGTYLATVGRDGYLRVFDYSKEQLICG------GKSYYGALLCCAWS 350 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~v~vwd~~~~~~~~~------~~~~~~~v~~l~~s 350 (548)
.+.....+.... +.+ ....++..+.||.+.++++........ ...+...+..+.+.
T Consensus 158 -------------~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T d1mdah_ 158 -------------DDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN 220 (368)
T ss_dssp -------------EEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET
T ss_pred -------------EeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc
Confidence 112222111111 111 223444555666666666654322111 12233445567788
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceeEEe--ccCCC----------CCeEEEEEecCCCCCCCCCCccceeEEEEEEeCC-
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKVVAW--GEGHN----------SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQD- 417 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~~~~--~~~h~----------~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~D- 417 (548)
+++..+.+. ++.+.++++........ ...+. .....++++| ++. .+++....+
T Consensus 221 ~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-------~~~-----~~~v~~~~~~ 286 (368)
T d1mdah_ 221 YPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-------NTD-----GIMILTVEHS 286 (368)
T ss_dssp TTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-------TTT-----EEEEEEEECS
T ss_pred cCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-------CCC-----EEEEEecCCC
Confidence 888665544 45666777665543322 11111 1123466776 652 222222221
Q ss_pred -------CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeE
Q 008939 418 -------TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSG 490 (548)
Q Consensus 418 -------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~ 490 (548)
..|.+||..+++.+..+.. ...+.+
T Consensus 287 ~~~~~~~~~v~v~D~~t~~~~~~~~~------------------------------------------------~~~~~~ 318 (368)
T d1mdah_ 287 RSCLAAAENTSSVTASVGQTSGPISN------------------------------------------------GHDSDA 318 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEE------------------------------------------------EEEECE
T ss_pred ceeecCCceEEEEECCCCcEeEEecC------------------------------------------------CCceeE
Confidence 2477777777766543322 245788
Q ss_pred EEEeCCe----EEEEECCCeEEEEeCCCCC
Q 008939 491 LIFTQES----VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 491 l~fspd~----l~t~s~Dg~I~iW~~~~~~ 516 (548)
++|+||+ ++++..|+.|++||..+++
T Consensus 319 ~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 9999983 4677789999999988766
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.33 E-value=2.3e-11 Score=119.95 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=164.6
Q ss_pred EEEEEcCCcEEEEEeeecccccccceeeeeeeccCC-----------------------cccCcceEEEEEecCCCcEEE
Q 008939 191 LLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDG-----------------------SVNNSRCTSVTWVPGGDGAFV 247 (548)
Q Consensus 191 l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~v~~l~~~p~~~~~l~ 247 (548)
+++++.+|+|.+|++.+ .+.+....-|+++. -.|..........|||+.+++
T Consensus 14 f~Sgg~sG~V~V~dlpS-----~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV 88 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPS-----MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI 88 (441)
T ss_dssp EEECBTTCCEEEEEETT-----TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred EEeCCCCCcEEEEeCCC-----CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence 66777899999999875 22221111122211 123445566667899995556
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECCCCC--EEEEEECCC---
Q 008939 248 VGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFSTDGT--YLATVGRDG--- 321 (548)
Q Consensus 248 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~--~l~s~~~dg--- 321 (548)
....+.+|.++|+++.. ....+.. +...++.++|+|+++ |++..+.+.
T Consensus 89 ~d~~~~rVavIDl~t~k--------------------------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 89 NDKANTRVARIRLDIMK--------------------------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp EETTTTEEEEEETTTTE--------------------------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred EcCCCCEEEEEECCCCc--------------------------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence 66788999999998621 1222222 236789999999998 454444432
Q ss_pred --------------eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-------------------------
Q 008939 322 --------------YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED------------------------- 362 (548)
Q Consensus 322 --------------~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d------------------------- 362 (548)
.+..+|..+.+....+... +....++++|||+++++.+.+
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~ 221 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER 221 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred cCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence 2456888888877776643 457889999999998877643
Q ss_pred ----------------CeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECC
Q 008939 363 ----------------DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLE 426 (548)
Q Consensus 363 ----------------g~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~ 426 (548)
+.+.+++....+.+..+..... ...+.++| ||+ +.++++..+++|.+||++
T Consensus 222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSP-------DGk-----yl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSP-------DGK-----YFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECT-------TSC-----EEEEECTTSSBEEEEEGG
T ss_pred eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECC-------CCC-----EEEEeCCcCCcEEEEEee
Confidence 2334444444445555554333 46789999 993 556778889999999987
Q ss_pred CCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECC
Q 008939 427 MDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCRE 504 (548)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~D 504 (548)
+-+.. ++.. +... ..+.......-.....+|.+++ +.+...|
T Consensus 289 k~~~~--~~~~-----------------------------~~~~-----~~~~~~~~~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 289 KLDDL--FEDK-----------------------------IELR-----DTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp GHHHH--TTTS-----------------------------SCGG-----GGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred hhhhH--hhcc-----------------------------CCcc-----eEEEeecccccCcccceecCCceEEEccccc
Confidence 52211 1110 0000 0000000011123445799975 6677799
Q ss_pred CeEEEEeCCCC-------Cc-c---------ccCCCCcEE--EecCCCCceEeeec
Q 008939 505 GHIKIWMRPGV-------AE-S---------QSSSSETVL--STSSKDKPLLSSKV 541 (548)
Q Consensus 505 g~I~iW~~~~~-------~~-~---------~~~~~~~v~--~~s~d~~~l~s~~~ 541 (548)
.+|..|++... .. . +.+|...+. +++||||+|+++.+
T Consensus 333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 99999997421 10 0 123333333 67899999999954
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.29 E-value=4.9e-10 Score=113.45 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=100.0
Q ss_pred eEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------
Q 008939 177 VCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ 250 (548)
Q Consensus 177 ~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------ 250 (548)
..+.|.++ +.++. ..++.|++||+.+. +... .. -......+...|.++.|+||++ .|+.++
T Consensus 20 ~~~~W~~d---~~~~~--~~~~~~~~~~~~t~-----~~~~-~~-~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~ 86 (470)
T d2bgra1 20 YSLRWISD---HEYLY--KQENNILVFNAEYG-----NSSV-FL-ENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQW 86 (470)
T ss_dssp CCCEECSS---SEEEE--ESSSCEEEEETTTC-----CEEE-EE-CTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECS
T ss_pred cCCEeCCC---CEEEE--EcCCcEEEEECCCC-----CEEE-EE-chhhhhhccCccceeEECCCCC-EEEEEECCccee
Confidence 34667776 55554 56889999998872 2111 01 1122223567899999999999 677664
Q ss_pred ---CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 008939 251 ---ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFD 327 (548)
Q Consensus 251 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd 327 (548)
.++.+++||+.... +..+..|...+..+.|||||++||.. .++.+.+|+
T Consensus 87 r~s~~~~~~l~d~~~~~---------------------------~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~ 138 (470)
T d2bgra1 87 RHSYTASYDIYDLNKRQ---------------------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKI 138 (470)
T ss_dssp SSCEEEEEEEEETTTTE---------------------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred eeccCceEEEEECCCCc---------------------------ccccccCCccccccccccCcceeeEe-ecccceEEE
Confidence 35788999998621 22233455789999999999999996 467899999
Q ss_pred CCCCeEEEeeee------------------cCCceEEEEEccCCCEEEEEeCC
Q 008939 328 YSKEQLICGGKS------------------YYGALLCCAWSMDGKYILTGGED 362 (548)
Q Consensus 328 ~~~~~~~~~~~~------------------~~~~v~~l~~spdg~~l~sgs~d 362 (548)
..+++.+..... ..+....+.|||||++|+....|
T Consensus 139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 998876543221 12334568899999999987654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.19 E-value=2.5e-09 Score=108.08 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=83.4
Q ss_pred ccCCCCCCceeEEeCCCCCEEEEecC---------C-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEE
Q 008939 125 GASSSSTSMTNTNFDGKGTYIIFNVG---------D-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 125 ~~~~h~~~v~~~~~~~~g~~l~~~~~---------d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
.+..|...+....|+|||++|++..+ + .++|||++++ .+..+..++..+..+.|+|+ |..|+.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~~~~l~~~~~~~~~~~~SPD---G~~ia~- 128 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---QLITEERIPNNTQWVTWSPV---GHKLAY- 128 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECCSSCCCTTEEEEEECSS---TTCEEE-
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---cccccccCCccccccccccC---cceeeE-
Confidence 44566778899999999999998754 2 6789999964 35556778889999999999 777777
Q ss_pred EcCCcEEEEEeeecccccccceeeeee------eccCC-----cccCcceEEEEEecCCCcEEEEEeCC-CcEEEEEcC
Q 008939 195 LNSGDVYSVSLRQQLQDVGKKLVGAHH------YNKDG-----SVNNSRCTSVTWVPGGDGAFVVGHAD-GNLYVYEKS 261 (548)
Q Consensus 195 ~~dg~I~iwdl~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~v~~l~~~p~~~~~l~s~~~d-g~v~vwd~~ 261 (548)
..++.+++|++... +....... ++... ....+....+.|+|||+ .|+....| ..+..|++.
T Consensus 129 ~~~~~l~~~~~~~g-----~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~d~~~v~~~~~~ 201 (470)
T d2bgra1 129 VWNNDIYVKIEPNL-----PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYS 201 (470)
T ss_dssp EETTEEEEESSTTS-----CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEE
T ss_pred eecccceEEECCCC-----ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC-ccceeEecCCcCceEEEE
Confidence 46789999987752 11110000 00000 01234456788999999 67776654 346666553
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.15 E-value=1.3e-08 Score=99.19 Aligned_cols=262 Identities=11% Similarity=0.120 Sum_probs=150.5
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEE-ecCCCCceEEEecCCCCCCceEEEEE---cCCcEEEEEe
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSI-HFSNSNPVCHAFDQDAKDGHDLLIGL---NSGDVYSVSL 205 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~-~~~~~~~~~~~~~p~~~~~~~l~~g~---~dg~I~iwdl 205 (548)
...+..++|+++++++.+...+.+..|.+.... ..+... .-....+..++++++ +..+++.. ..+.|..+.+
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~p~~v~~~~~---~~~~~v~~a~~~~~~v~~~~~ 114 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPT-EIVHEASHPIGGHPRANDADTN---TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETT-EEEEEEEEECCSSGGGGCTTSC---CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCC-CeEEEeeecCCCCcEEEEECCC---CCEEEEEEecCCCCEEEEeEc
Confidence 344557999999999988777788888777532 122111 223456778888888 55443333 2456666554
Q ss_pred eeccc-------ccccceee-eeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 206 RQQLQ-------DVGKKLVG-AHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 206 ~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
..... .....+.. ....... ...-+.++.|+|+++.++++......|.+|+....+.....-.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q---~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~------ 185 (365)
T d1jofa_ 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQ---ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS------ 185 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE------
T ss_pred cCCCCcceeEeeeecceecCcccCcccC---CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc------
Confidence 32100 00000000 0000011 2334689999999994444444556889998765332110000
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCCCCeEE--Eeee----------------
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYSKEQLI--CGGK---------------- 338 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~~~~~~--~~~~---------------- 338 (548)
+.. .........++|+|+++++++.. .++.|.+|++..++.. ....
T Consensus 186 --------------~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (365)
T d1jofa_ 186 --------------VDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp --------------EEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred --------------eee-cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence 000 01125688899999999886665 5789999999765422 1111
Q ss_pred -ecCCceEEEEEccCCCEEEEEeC------CCeEEEEECCCceeE------EeccCCCCCeEEEEEecCCCCCCCCCCcc
Q 008939 339 -SYYGALLCCAWSMDGKYILTGGE------DDLVQVWSMEDRKVV------AWGEGHNSWVSGVAFDSYWSQPNSDGTAE 405 (548)
Q Consensus 339 -~~~~~v~~l~~spdg~~l~sgs~------dg~I~vwd~~~~~~~------~~~~~h~~~V~~v~~~p~~~~~~~dg~~~ 405 (548)
.+......+.++|||++|+++.. ...|..|++.....+ ...........+++++|. +|.
T Consensus 251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~------~G~-- 322 (365)
T d1jofa_ 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW------SDE-- 322 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT------CTT--
T ss_pred ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC------CCC--
Confidence 01123567899999999888643 234777877653211 111223456677899861 451
Q ss_pred ceeEEEEEEeCCCeEEEEECCCCeE
Q 008939 406 TVMYRFGSVGQDTRLLLWDLEMDEI 430 (548)
Q Consensus 406 ~~~~~l~s~~~Dg~i~lwd~~~~~~ 430 (548)
+++++...++.|.+|++.....
T Consensus 323 ---~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 323 ---WMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp ---EEEEECSSSCEEEEEEEETTEE
T ss_pred ---EEEEEeCCCCeEEEEEEeCCcC
Confidence 3455556789999998866543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=3.1e-08 Score=91.50 Aligned_cols=237 Identities=12% Similarity=0.061 Sum_probs=145.6
Q ss_pred CCCceeEEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecC-CCCceEEEecCCCCCCceEEEEEcCCcEEEEEee
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFS-NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLR 206 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~ 206 (548)
...+..++++++|.+.++.... .+..++.... ....+.+. ...+..++++++ +.++++....+.|++++-.
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~gvav~~~---g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST---GTTVLPFNGLYQPQGLAVDGA---GTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC-------CEEECCCCSCCSCCCEEECTT---CCEEEEETTTEEEEECTTC
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---eEEEeccCCccCceEEEEcCC---CCEEEeeeeeceeeeeeec
Confidence 4567789999999977765443 5666655532 22222222 346788999987 5555444444444444322
Q ss_pred ecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCC
Q 008939 207 QQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRY 286 (548)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (548)
. ...+... .....+.+|++.+++. ++++-..+..+..++.... .......
T Consensus 87 ~-----~~~~~~~--------~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~--~~~~~~~-------------- 136 (260)
T d1rwia_ 87 N-----NQTVLPF--------DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSK--TQTVLPF-------------- 136 (260)
T ss_dssp S-----CCEECCC--------CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCS--SCEECCC--------------
T ss_pred c-----ceeeeee--------eeeeecccccccccce-eEeeccccccccccccccc--eeeeeee--------------
Confidence 2 1111110 0235678999999987 6666555566666665431 1111000
Q ss_pred CCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEE
Q 008939 287 SKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 366 (548)
Q Consensus 287 ~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~ 366 (548)
.......+++++++++++++...++.|..+|...................|++.++|+++++....+.|.
T Consensus 137 ----------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~ 206 (260)
T d1rwia_ 137 ----------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV 206 (260)
T ss_dssp ----------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEE
T ss_pred ----------cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEE
Confidence 0013456899999999888888888999999876544433334456678999999999888888888999
Q ss_pred EEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEEC
Q 008939 367 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDL 425 (548)
Q Consensus 367 vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~ 425 (548)
.++.............-.....|++++ +| .++++-..+++|+.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~P~~i~~d~-------~g------~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 207 KLLAGSTTSTVLPFTGLNTPLAVAVDS-------DR------TVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EECTTCSCCEECCCCSCCCEEEEEECT-------TC------CEEEEEGGGTEEEEECC
T ss_pred EEeCCCCeEEEEccCCCCCeEEEEEeC-------CC------CEEEEECCCCEEEEEeC
Confidence 888765433222222335668999998 88 67777666777765553
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=6.4e-08 Score=89.34 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=137.4
Q ss_pred CCCceeEEeCCCCCEEEEecCC----eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEE
Q 008939 130 STSMTNTNFDGKGTYIIFNVGD----AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVS 204 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d----~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwd 204 (548)
...+...+|+|||+.|++...+ .+.+.+... .....+...........|+|+ +..++... ..+...++.
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~spd---g~~i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASFPRHNGAPAFSPD---GSKLAFALSKTGSLNLYV 111 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEEEECCSSCEEEEEECTT---SSEEEEEECTTSSCEEEE
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeeccc---CceeEEeeeecccccceecCC---CCeeeEeeecCCccceee
Confidence 4556678999999999986543 466666664 345566667788899999999 55565544 344444444
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
..... ....... ..........+++++...+++...+|...+|........
T Consensus 112 ~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~------------------ 162 (269)
T d2hqsa1 112 MDLAS----GQIRQVT-------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------------ 162 (269)
T ss_dssp EETTT----CCEEECC-------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------------
T ss_pred ccccc----ccceeee-------eccccccccccccccccceecccccCCceEeeeeccccc------------------
Confidence 33211 1111000 134444566788888866777777776666555432211
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCC---eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDG---YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 361 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~ 361 (548)
...+..+........|+|+++.++..+.++ .+.+.+...+... ............|+|||+.|+..+.
T Consensus 163 -------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 163 -------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp -------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred -------ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEc
Confidence 111122235567789999999888776554 4555565555432 2334556678899999998875543
Q ss_pred ---CCeEEEEECCCceeEEeccCCCCCeEEEEEec
Q 008939 362 ---DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 393 (548)
Q Consensus 362 ---dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p 393 (548)
...|.+++++.+.. ..+......+...+|+|
T Consensus 234 ~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 234 QGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp ETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred CCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 34789999987655 44555677788899998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=5.3e-07 Score=83.87 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=155.4
Q ss_pred CceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe-CCC
Q 008939 175 NPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-ADG 253 (548)
Q Consensus 175 ~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg 253 (548)
.+..++++++ ++.+++-..++.|++||.+. +.+.. ................+++.++....+++.. .++
T Consensus 24 ~P~gvavd~d---g~i~VaD~~n~rI~v~d~~G------~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 93 (279)
T d1q7fa_ 24 EPSGVAVNAQ---NDIIVADTNNHRIQIFDKEG------RFKFQ-FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 93 (279)
T ss_dssp CEEEEEECTT---CCEEEEEGGGTEEEEECTTS------CEEEE-ECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccEEEEcCC---CCEEEEECCCCEEEEEeCCC------CEEEE-ecccCCCcccccccccccccccccccceeccCCcc
Confidence 5788999887 66666656777899998653 11111 1000011112334556777766553444433 344
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
.|.+++.. +.. +..+. ........+++.+++.++++....+.+.+++.. ++
T Consensus 94 ~i~~~~~~--g~~-------------------------~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~ 145 (279)
T d1q7fa_ 94 QIQIYNQY--GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 145 (279)
T ss_dssp EEEEECTT--SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccccccc--ccc-------------------------eeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cc
Confidence 56665543 211 11111 012456789999999988887777888888865 55
Q ss_pred EEEee--eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc--CCCCCeEEEEEecCCCCCCCCCCcccee
Q 008939 333 LICGG--KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE--GHNSWVSGVAFDSYWSQPNSDGTAETVM 408 (548)
Q Consensus 333 ~~~~~--~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~dg~~~~~~ 408 (548)
.+..+ ..+......+++.++++++++....+.|++||.. ++.+..+- ++......|+++| +|
T Consensus 146 ~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~-------~G------ 211 (279)
T d1q7fa_ 146 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-------NG------ 211 (279)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-------TC------
T ss_pred eeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc-------CC------
Confidence 55554 2345678889999999988888889999999975 55555553 4556678999999 88
Q ss_pred EEEEEEeC-CCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecCCCC
Q 008939 409 YRFGSVGQ-DTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEP 487 (548)
Q Consensus 409 ~~l~s~~~-Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~ 487 (548)
+++++-.. ++.|.+|+. .++.+..+... .....
T Consensus 212 ~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~---------------------------------------------~~~~~ 245 (279)
T d1q7fa_ 212 EILIADNHNNFNLTIFTQ-DGQLISALESK---------------------------------------------VKHAQ 245 (279)
T ss_dssp CEEEEECSSSCEEEEECT-TSCEEEEEEES---------------------------------------------SCCSC
T ss_pred eEEEEECCCCcEEEEECC-CCCEEEEEeCC---------------------------------------------CCCCC
Confidence 56666543 457999984 56655544320 11224
Q ss_pred eeEEEEeCCe-EEEEECCCeEEEEeCCC
Q 008939 488 LSGLIFTQES-VLTVCREGHIKIWMRPG 514 (548)
Q Consensus 488 V~~l~fspd~-l~t~s~Dg~I~iW~~~~ 514 (548)
...|++.+|+ |+.+..+..|++|....
T Consensus 246 p~~vav~~dG~l~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 246 CFDVALMDDGSVVLASKDYRLYIYRYVQ 273 (279)
T ss_dssp EEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred EeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence 6789999984 77778899999999764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.97 E-value=2.5e-07 Score=89.81 Aligned_cols=178 Identities=10% Similarity=0.068 Sum_probs=101.4
Q ss_pred CCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH-- 250 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~-- 250 (548)
...+.-++|+|+ ++.|++.. .+.+..|.+... +. +...... . .......+.++++++.++++..
T Consensus 39 ~~~~s~la~s~d---~~~ly~~~-~~~~~~~~i~~~----~~-~~~~~~~-~----~~~~p~~v~~~~~~~~~~v~~a~~ 104 (365)
T d1jofa_ 39 DEPISWMTFDHE---RKNIYGAA-MKKWSSFAVKSP----TE-IVHEASH-P----IGGHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp TCCCSEEEECTT---SSEEEEEE-BTEEEEEEEEET----TE-EEEEEEE-E----CCSSGGGGCTTSCCEEEEEEECSS
T ss_pred CCCCCEEEEcCC---CCEEEEEe-CCcEEEEEEeCC----CC-eEEEeee-c----CCCCcEEEEECCCCCEEEEEEecC
Confidence 445677999998 66777764 567888887652 11 1111110 0 1234556778888874333332
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEee-ecCCCeEEEEECCCCCEEEEEEC-CCeEEEEeC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWH-ICQGSINSIAFSTDGTYLATVGR-DGYLRVFDY 328 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~-dg~v~vwd~ 328 (548)
..+.|..+.+...+.....+........ ..+..... .....++++.|+|||++|+++.. ...|.+|+.
T Consensus 105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~ 174 (365)
T d1jofa_ 105 PPYAVYANPFYKFAGYGNVFSVSETGKL----------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCE----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEeEccCCCCcceeEeeeeccee----------cCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEc
Confidence 3567777766543322111111100000 00011111 11234789999999999888864 357888876
Q ss_pred CC-CeEE--Eeee--ecCCceEEEEEccCCCEEEEEe-CCCeEEEEECCCce
Q 008939 329 SK-EQLI--CGGK--SYYGALLCCAWSMDGKYILTGG-EDDLVQVWSMEDRK 374 (548)
Q Consensus 329 ~~-~~~~--~~~~--~~~~~v~~l~~spdg~~l~sgs-~dg~I~vwd~~~~~ 374 (548)
.. +.+. .... ......+.++|+|+++++.+.. .++.|.+|+++..+
T Consensus 175 ~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred cCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 53 3322 1111 2345688999999999886655 57899999997653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.97 E-value=1.4e-09 Score=106.92 Aligned_cols=253 Identities=11% Similarity=-0.004 Sum_probs=144.5
Q ss_pred CCCCceeEEeCCCCCEEEEecC--CeEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceE-EEEEcCCcEE---
Q 008939 129 SSTSMTNTNFDGKGTYIIFNVG--DAIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDL-LIGLNSGDVY--- 201 (548)
Q Consensus 129 h~~~v~~~~~~~~g~~l~~~~~--d~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l-~~g~~dg~I~--- 201 (548)
|.-.+....+.|||++++++.. +.|.++|+++.+ ....+.. ....+..++|+|+ ++.+ +++..+..+.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~spd---g~t~YV~~~~~~~v~~~~ 144 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQKV---PKTNYVFCNAEFVIPQPN 144 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECCS---SBCCEEEEEECSCEESSC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEecc---CCEEEEEeccCCcccccC
Confidence 3334455667899999977543 399999999854 5544443 3568899999998 4433 2233333332
Q ss_pred ---------------EEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-CcEEEEEcCCCCC
Q 008939 202 ---------------SVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-GNLYVYEKSKDGA 265 (548)
Q Consensus 202 ---------------iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-g~v~vwd~~~~~~ 265 (548)
.+|..+ .++..... ....+..+.|+|+++ ++++.+.+ ..+..++..+...
T Consensus 145 dg~~~~~~~~~~~~~~iD~~t------~~v~~qI~-------v~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~ 210 (441)
T d1qnia2 145 DGTDFSLDNSYTMFTAIDAET------MDVAWQVI-------VDGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRND 210 (441)
T ss_dssp SSSCCCGGGEEEEEEEEETTT------CSEEEEEE-------ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSS
T ss_pred cccccccccccceEEeecCcc------ceeeEEEe-------cCCCccceEECCCCC-EEEEEecCCCceEEEeccCcce
Confidence 233322 11111111 234578899999999 55555543 3333333222110
Q ss_pred CCCCcc---------cccccceeeeecC------CCCCCCCeeEeeecCCCeEEEEECCCCCEEEE-EECCCeEEEEeCC
Q 008939 266 GDSSFP---------VIKDQTQFSVAHP------RYSKSNPIARWHICQGSINSIAFSTDGTYLAT-VGRDGYLRVFDYS 329 (548)
Q Consensus 266 ~~~~~~---------~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s-~~~dg~v~vwd~~ 329 (548)
. .... ..++.....+... .......+..+..+ .....++++|||+++++ +..+++|.|||++
T Consensus 211 ~-d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 211 R-DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp B-CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred E-EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 0 0000 0000000000000 00112334444444 34678999999998765 5678999999986
Q ss_pred CCeEE--------Eeeee---cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCc----------eeEEec-----cCCC
Q 008939 330 KEQLI--------CGGKS---YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDR----------KVVAWG-----EGHN 383 (548)
Q Consensus 330 ~~~~~--------~~~~~---~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~----------~~~~~~-----~~h~ 383 (548)
+.+.. ..+.+ ..-.....+|.++|..+.+..-|..|..|++... ..+..+ .+|.
T Consensus 289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~ 368 (441)
T d1qnia2 289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368 (441)
T ss_dssp GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred hhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence 53210 11111 1123455689999998889999999999998421 233333 4677
Q ss_pred CCeEEEEEecCCCCCCCCCCccceeEEEEEEe
Q 008939 384 SWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG 415 (548)
Q Consensus 384 ~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~ 415 (548)
..+.+..|+| || ++|++++
T Consensus 369 ~~~~~~t~~p-------dG------k~l~s~~ 387 (441)
T d1qnia2 369 HASLTESRDA-------DG------KWLVVLS 387 (441)
T ss_dssp EETTTTSTTC-------CC------CEEEEEE
T ss_pred ccccccccCC-------CC------cEEEecC
Confidence 7777788888 99 8999994
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=3.9e-07 Score=84.81 Aligned_cols=236 Identities=12% Similarity=0.115 Sum_probs=151.8
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEEE-cCCcEEEE
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSV 203 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iw 203 (548)
.+..++++++|+++++...+ .|++||.+. +.+..+.- ....+..+++.++. +..+++.. .++.|..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~i~~~ 98 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNS--GDIIVTERSPTHQIQIY 98 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTT--TEEEEEECGGGCEEEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCcccccccccccccccc--cccceeccCCccccccc
Confidence 45689999999988886555 999999763 24444321 11234556665552 33333332 33456655
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeec
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAH 283 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 283 (548)
+... +.... +.. ........+++.+++. ++++....+.+.+++.+. ..
T Consensus 99 ~~~g------~~~~~---~~~---~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g--~~----------------- 146 (279)
T d1q7fa_ 99 NQYG------QFVRK---FGA---TILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NV----------------- 146 (279)
T ss_dssp CTTS------CEEEE---ECT---TTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CE-----------------
T ss_pred cccc------cceee---cCC---CcccccceeccccCCc-EEEEeeccceeeEeccCC--ce-----------------
Confidence 5432 11111 110 1244567888988887 677666667777776542 11
Q ss_pred CCCCCCCCeeEe--eecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeee--ecCCceEEEEEccCCCEEEEE
Q 008939 284 PRYSKSNPIARW--HICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGK--SYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 284 ~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~sg 359 (548)
+..+ ..+......+++.++++++++....+.|++||.. ++.+..+. +.......|++.++|+++++-
T Consensus 147 --------~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad 217 (279)
T d1q7fa_ 147 --------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIAD 217 (279)
T ss_dssp --------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred --------eecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEE
Confidence 1111 1123567889999999888888888999999975 56665553 344567899999999977775
Q ss_pred eC-CCeEEEEECCCceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 360 GE-DDLVQVWSMEDRKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 360 s~-dg~I~vwd~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
.. ++.|.+|+. +++.+..+.. .......|++.| || +++ .+..++.|++|.....
T Consensus 218 ~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-------dG------~l~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 218 NHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-------DG------SVV-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp CSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-------TT------EEE-EEETTTEEEEEECSCC
T ss_pred CCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC-------CC------cEE-EEeCCCeEEEEEeeee
Confidence 43 457999984 5777666542 334678999999 99 544 4567899999998764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.94 E-value=2.7e-07 Score=87.51 Aligned_cols=241 Identities=14% Similarity=0.166 Sum_probs=149.8
Q ss_pred eeEEeCCCCCEEEEecC--------CeEEEEEccCCCCCCeEEEec-----CCCCceEEEecCCCCCCceEEEEEcCCcE
Q 008939 134 TNTNFDGKGTYIIFNVG--------DAIFISDLNSQDKDPIKSIHF-----SNSNPVCHAFDQDAKDGHDLLIGLNSGDV 200 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~--------d~v~vwd~~~~~~~~i~~~~~-----~~~~~~~~~~~p~~~~~~~l~~g~~dg~I 200 (548)
...+|+++|++.++... ..|..||..++. ...+.. ....+..++|+++ ++.|+++...+.|
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~---~~~~~~~~~~~~~g~P~Gl~~~~d---g~~l~vad~~~~i 94 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KTVICKPEVNGYGGIPAGCQCDRD---ANQLFVADMRLGL 94 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EEEEECCEETTEECCEEEEEECSS---SSEEEEEETTTEE
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCc---EEEEECCccccCCCcceeEEEeCC---CCEEEEEECCCeE
Confidence 35789999998877443 257778877643 222221 1235788999998 7788888887788
Q ss_pred EEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcE--------------EEEEcCCCCCC
Q 008939 201 YSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNL--------------YVYEKSKDGAG 266 (548)
Q Consensus 201 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v--------------~vwd~~~~~~~ 266 (548)
..++....... . .....++. .-..++++++.++|. +.++-. .+.. +||.+..++
T Consensus 95 ~~~~~~g~~~~-----~--~~~~~~g~-~~~~pndl~~d~~G~-lyvtd~-~~~~~~~~~~~~~~~~~G~v~~~~~dg-- 162 (314)
T d1pjxa_ 95 LVVQTDGTFEE-----I--AKKDSEGR-RMQGCNDCAFDYEGN-LWITAP-AGEVAPADYTRSMQEKFGSIYCFTTDG-- 162 (314)
T ss_dssp EEEETTSCEEE-----C--CSBCTTSC-BCBCCCEEEECTTSC-EEEEEC-BCBCTTSCCCBTTSSSCEEEEEECTTS--
T ss_pred EEEeCCCcEEE-----E--Eecccccc-ccCCCcEEEECCCCC-EEEecC-ccCcccccccceeccCCceEEEEeecC--
Confidence 88886542111 0 11111110 122468899999987 544422 1111 122222111
Q ss_pred CCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCC----EE-EEEECCCeEEEEeCCCCeEEE------
Q 008939 267 DSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGT----YL-ATVGRDGYLRVFDYSKEQLIC------ 335 (548)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~----~l-~s~~~dg~v~vwd~~~~~~~~------ 335 (548)
.+..+...-...+.++|+|++. .| ++-+..+.|..||+.....+.
T Consensus 163 ------------------------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~ 218 (314)
T d1pjxa_ 163 ------------------------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp ------------------------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred ------------------------ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE
Confidence 1112222223457899988764 34 444567889999875332221
Q ss_pred eeee-cCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEE
Q 008939 336 GGKS-YYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSV 414 (548)
Q Consensus 336 ~~~~-~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~ 414 (548)
.+.. .....-.+++..+|++.++....+.|.+||.+.++.+..+..+....++++|.| |+. .++++.
T Consensus 219 ~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~-------d~~-----~lyVt~ 286 (314)
T d1pjxa_ 219 HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-------QTK-----TIFVTE 286 (314)
T ss_dssp ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-------TSS-----EEEEEE
T ss_pred EccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-------CCC-----EEEEEE
Confidence 1111 123356799999999888888889999999988887777776677889999998 872 467777
Q ss_pred eCCCeEEEEECCCC
Q 008939 415 GQDTRLLLWDLEMD 428 (548)
Q Consensus 415 ~~Dg~i~lwd~~~~ 428 (548)
+.++.|...|+...
T Consensus 287 ~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 287 HENNAVWKFEWQRN 300 (314)
T ss_dssp TTTTEEEEEECSSC
T ss_pred CCCCcEEEEECCCC
Confidence 88898888887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=2.1e-07 Score=87.71 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=143.1
Q ss_pred ceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccc
Q 008939 133 MTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQD 211 (548)
Q Consensus 133 v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~ 211 (548)
+..++++|||+++++...+ +|+.|+... ....+......+.+++|+++ ++++++...++.+..|++....
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----~~~~~~~~~~~~~gla~~~d---G~l~v~~~~~~~~~~~~~~~~~-- 100 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDG----NQQIHATVEGKVSGLAFTSN---GDLVATGWNADSIPVVSLVKSD-- 100 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEEECSSEEEEEEECTT---SCEEEEEECTTSCEEEEEECTT--
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCC----CEEEEEcCCCCcceEEEcCC---CCeEEEecCCceEEEEEecccc--
Confidence 5578999999999887766 888887553 34445556678999999998 8888888888999998876521
Q ss_pred cccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCC
Q 008939 212 VGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNP 291 (548)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (548)
.. ... .... .....++.+.+.+++. ++++-+.++.++.++................
T Consensus 101 -~~-~~~-~~~~----~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------- 156 (302)
T d2p4oa1 101 -GT-VET-LLTL----PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLA---------------- 156 (302)
T ss_dssp -SC-EEE-EEEC----TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGS----------------
T ss_pred -cc-eee-cccc----CCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccc----------------
Confidence 11 111 0000 1345678999999997 7777778888888887642100000000000
Q ss_pred eeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEe--eeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 292 IARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICG--GKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 292 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
...+.........+.++.+ .++++.+..+.|..+++........ ..........+++.++|+++++...++.|..++
T Consensus 157 ~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~ 235 (302)
T d2p4oa1 157 RSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA 235 (302)
T ss_dssp CSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred eeeccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence 0000011134566766543 4555666788888888865432211 111234456799999999888888899999998
Q ss_pred CCCce-eEEeccCCCCCeEEEEEe
Q 008939 370 MEDRK-VVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 370 ~~~~~-~~~~~~~h~~~V~~v~~~ 392 (548)
..... .+......-...++++|.
T Consensus 236 p~G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 236 PDRSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp TTCCEEEEECGGGTCTTEEEEEEC
T ss_pred CCCCEEEEEecCCCCCCceEEEEc
Confidence 76432 234444445668999994
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=2.8e-07 Score=86.87 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=146.9
Q ss_pred cceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCC
Q 008939 231 SRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTD 310 (548)
Q Consensus 231 ~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 310 (548)
..+..+++.|+|. ++++...+++|+.|+... . ...+......+.+++|+++
T Consensus 28 ~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g--~--------------------------~~~~~~~~~~~~gla~~~d 78 (302)
T d2p4oa1 28 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--N--------------------------QQIHATVEGKVSGLAFTSN 78 (302)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--C--------------------------EEEEEECSSEEEEEEECTT
T ss_pred CCcCCEEECCCCC-EEEEeCCCCEEEEEeCCC--C--------------------------EEEEEcCCCCcceEEEcCC
Confidence 3577899999998 888888899888877542 1 2222333467899999999
Q ss_pred CCEEEEEECCCeEEEEeCCCC--eEEEee-eecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc-------
Q 008939 311 GTYLATVGRDGYLRVFDYSKE--QLICGG-KSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE------- 380 (548)
Q Consensus 311 g~~l~s~~~dg~v~vwd~~~~--~~~~~~-~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~------- 380 (548)
|+++++...++.+.+|+.... ...... .........+++.++++++++-+.++.+..+|...+.....+.
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 158 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 158 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence 999998888888888877533 222111 1234568899999999999888889999999988765332221
Q ss_pred ---CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCe
Q 008939 381 ---GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNV 457 (548)
Q Consensus 381 ---~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 457 (548)
........+.++. + .++++....+.|..+++..........
T Consensus 159 ~~~~~~~~~ngi~~~~-------~-------~l~~~~~~~~~i~~~~~~~~~~~~~~~---------------------- 202 (302)
T d2p4oa1 159 NSESVFPAANGLKRFG-------N-------FLYVSNTEKMLLLRIPVDSTDKPGEPE---------------------- 202 (302)
T ss_dssp STTCCSCSEEEEEEET-------T-------EEEEEETTTTEEEEEEBCTTSCBCCCE----------------------
T ss_pred eccCcccccccccccC-------C-------ceeeecCCCCeEEeccccccccccccc----------------------
Confidence 1223456676653 2 467777778888888776543221100
Q ss_pred eeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe--EEEEECCCeEEEEeCCCCCcccc----CC-CCcEEEe-
Q 008939 458 CPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES--VLTVCREGHIKIWMRPGVAESQS----SS-SETVLST- 529 (548)
Q Consensus 458 ~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~--l~t~s~Dg~I~iW~~~~~~~~~~----~~-~~~v~~~- 529 (548)
.. .+......|+|.+++ +++...++.|..++..++..... .. ...-.+|
T Consensus 203 ----------------------~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 203 ----------------------IF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp ----------------------EE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred ----------------------cc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEc
Confidence 00 112335679999985 55666788999998776543222 11 1233478
Q ss_pred --cCCCCceEeeecc
Q 008939 530 --SSKDKPLLSSKVV 542 (548)
Q Consensus 530 --s~d~~~l~s~~~~ 542 (548)
++|++.|...+..
T Consensus 260 ~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 260 QTEGDCTAIYVVTNG 274 (302)
T ss_dssp CSTTTTTEEEEEECT
T ss_pred CCCCCCCEEEEECCC
Confidence 6788887665443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2.8e-06 Score=77.82 Aligned_cols=220 Identities=12% Similarity=0.036 Sum_probs=128.7
Q ss_pred eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC---cEEEEEeeecccccccceeeeeeeccCCcc
Q 008939 152 AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG---DVYSVSLRQQLQDVGKKLVGAHHYNKDGSV 228 (548)
Q Consensus 152 ~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 228 (548)
.|+|.|.+... ...+.-.+..+..-+|+|+ |+.|+...... .+++.+... ....... .
T Consensus 20 ~l~i~d~dG~~---~~~l~~~~~~~~sP~wSPD---Gk~IAf~~~~~~~~~~~~~~~~~------~~~~~~~-------~ 80 (269)
T d2hqsa1 20 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPD---GSKLAYVTFESGRSALVIQTLAN------GAVRQVA-------S 80 (269)
T ss_dssp EEEEEETTSCS---CEEEEEESSCEEEEEECTT---SSEEEEEECTTSSCEEEEEETTT------CCEEEEE-------C
T ss_pred EEEEEcCCCCC---cEEEecCCCceeeeEECCC---CCEEEEEEeeccCcceeeeeccc------CceeEEe-------e
Confidence 58888887543 3333335667788999999 77787665543 255555443 1111111 2
Q ss_pred cCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEEC
Q 008939 229 NNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFS 308 (548)
Q Consensus 229 ~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 308 (548)
+........|+|++..++.....++...++....... ................++
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 135 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-------------------------QIRQVTDGRSNNTEPTWF 135 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------------------------CEEECCCCSSCEEEEEEC
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccc-------------------------cceeeeeccccccccccc
Confidence 5677889999999995555555555555544432111 011111122344455677
Q ss_pred CCCCEEEEEE-CCC--eEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCC-Ce--EEEEECCCceeEEeccCC
Q 008939 309 TDGTYLATVG-RDG--YLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGED-DL--VQVWSMEDRKVVAWGEGH 382 (548)
Q Consensus 309 p~g~~l~s~~-~dg--~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~d-g~--I~vwd~~~~~~~~~~~~h 382 (548)
++++.++... .++ .|.+.++..+... .+...........|+|+++.++..+.+ +. |.+.+...+.. .+..+
T Consensus 136 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~ 212 (269)
T d2hqsa1 136 PDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS 212 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC
T ss_pred cccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeec
Confidence 7766555443 444 4556666655433 233455667788999999988876554 34 44455554433 23335
Q ss_pred CCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC---CCeEEEEECCCCeEE
Q 008939 383 NSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ---DTRLLLWDLEMDEIV 431 (548)
Q Consensus 383 ~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~---Dg~i~lwd~~~~~~~ 431 (548)
........|+| || +.|+-.+. ...|.+|++..+...
T Consensus 213 ~~~~~~p~~SP-------DG------~~i~f~s~~~~~~~l~~~~~dg~~~~ 251 (269)
T d2hqsa1 213 TFLDETPSLAP-------NG------TMVIYSSSQGMGSVLNLVSTDGRFKA 251 (269)
T ss_dssp SSSCEEEEECT-------TS------SEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred CccccceEECC-------CC------CEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 66677889999 99 45543332 356888888776543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=7.5e-07 Score=81.85 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=124.5
Q ss_pred CCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC
Q 008939 174 SNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD 252 (548)
Q Consensus 174 ~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d 252 (548)
..|..++++++ +...++.. ..+.|..++.... ..... . .. .......|++.+++. ++++....
T Consensus 14 ~~P~~vavd~d---G~i~v~~~~~~~~i~~~~~~~~----~~~~~---~--~~---~~~~p~gvav~~~g~-i~v~d~~~ 77 (260)
T d1rwia_ 14 LSPSGVAVDSA---GNVYVTSEGMYGRVVKLATGST----GTTVL---P--FN---GLYQPQGLAVDGAGT-VYVTDFNN 77 (260)
T ss_dssp CCEEEEEECTT---CCEEEEECSSSCEEEEEC--------CEEEC---C--CC---SCCSCCCEEECTTCC-EEEEETTT
T ss_pred CCCCEEEEcCC---CCEEEEEcCCCCEEEEEcCCCc----eEEEe---c--cC---CccCceEEEEcCCCC-EEEeeeee
Confidence 46789999988 66555544 4467777765541 01110 0 00 123457889999987 66665555
Q ss_pred CcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCe
Q 008939 253 GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQ 332 (548)
Q Consensus 253 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~ 332 (548)
+.+++++... ....... .......++++.++++++++-..+..+..++.....
T Consensus 78 ~~i~~~~~~~-~~~~~~~--------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~ 130 (260)
T d1rwia_ 78 RVVTLAAGSN-NQTVLPF--------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 130 (260)
T ss_dssp EEEEECTTCS-CCEECCC--------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS
T ss_pred ceeeeeeecc-ceeeeee--------------------------eeeeecccccccccceeEeeccccccccccccccce
Confidence 5555544322 1100000 001457889999999887776666778888776544
Q ss_pred EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEE
Q 008939 333 LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFG 412 (548)
Q Consensus 333 ~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~ 412 (548)
..............+++.++++++++...++.|..+|.+...........-.....|++++ +| ++++
T Consensus 131 ~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-------~g------~l~v 197 (260)
T d1rwia_ 131 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-------AG------TVYV 197 (260)
T ss_dssp CEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-------TC------CEEE
T ss_pred eeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeee-------ee------eeee
Confidence 3322222234567899999999888888889999999886554443334556678999998 88 6777
Q ss_pred EEeCCCeEEEEECCC
Q 008939 413 SVGQDTRLLLWDLEM 427 (548)
Q Consensus 413 s~~~Dg~i~lwd~~~ 427 (548)
+....+.|..++...
T Consensus 198 sd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 198 TEHNTNQVVKLLAGS 212 (260)
T ss_dssp EETTTTEEEEECTTC
T ss_pred eecCCCEEEEEeCCC
Confidence 777778888777544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.80 E-value=3.2e-06 Score=79.81 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=147.3
Q ss_pred CCCceEEEecCCCCCCceEEEEEc-------CCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcE
Q 008939 173 NSNPVCHAFDQDAKDGHDLLIGLN-------SGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGA 245 (548)
Q Consensus 173 ~~~~~~~~~~p~~~~~~~l~~g~~-------dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 245 (548)
-..+-..+|+|+ ++++++... +|+|..||..+. ....... ............++|.+++. .
T Consensus 17 ~~g~EGpa~d~d---G~ly~~~~~~~~~~~~~g~I~r~d~~~~------~~~~~~~--~~~~~~~g~P~Gl~~~~dg~-~ 84 (314)
T d1pjxa_ 17 IPGAEGPVFDKN---GDFYIVAPEVEVNGKPAGEILRIDLKTG------KKTVICK--PEVNGYGGIPAGCQCDRDAN-Q 84 (314)
T ss_dssp CTTCEEEEECTT---SCEEEEETTCEETTEECCEEEEECTTTC------CEEEEEC--CEETTEECCEEEEEECSSSS-E
T ss_pred CCCCeEeEEeCC---CCEEEEECccccccccCCEEEEEECCCC------cEEEEEC--CccccCCCcceeEEEeCCCC-E
Confidence 345677889887 665554322 456888876651 1111000 00001123467899999998 7
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------
Q 008939 246 FVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR------ 319 (548)
Q Consensus 246 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------ 319 (548)
|+++.....|..++.+... ........+.. + -...+.++|.++|++.++-..
T Consensus 85 l~vad~~~~i~~~~~~g~~--~~~~~~~~~g~-------------~-------~~~pndl~~d~~G~lyvtd~~~~~~~~ 142 (314)
T d1pjxa_ 85 LFVADMRLGLLVVQTDGTF--EEIAKKDSEGR-------------R-------MQGCNDCAFDYEGNLWITAPAGEVAPA 142 (314)
T ss_dssp EEEEETTTEEEEEETTSCE--EECCSBCTTSC-------------B-------CBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred EEEEECCCeEEEEeCCCcE--EEEEecccccc-------------c-------cCCCcEEEECCCCCEEEecCccCcccc
Confidence 7777776778888865421 11000000000 0 023578999999987776422
Q ss_pred ---------CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCC-----EEEEEeCCCeEEEEECCCcee------EEec
Q 008939 320 ---------DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGK-----YILTGGEDDLVQVWSMEDRKV------VAWG 379 (548)
Q Consensus 320 ---------dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~-----~l~sgs~dg~I~vwd~~~~~~------~~~~ 379 (548)
+|.|..++.. ++..... .....-+.++|+|+++ ++++-+..+.|..||+..... ...+
T Consensus 143 ~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 143 DYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence 2345445443 3333222 2233457899999875 445556788999998764322 2222
Q ss_pred cC-CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCee
Q 008939 380 EG-HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVC 458 (548)
Q Consensus 380 ~~-h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 458 (548)
.+ +......|++++ +| +++++....+.|.+||.+.++.+..+..
T Consensus 221 ~~~~~~~pdGiavD~-------~G------nlyVa~~~~g~I~~~dp~~g~~~~~i~~---------------------- 265 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDE-------DN------NLLVANWGSSHIEVFGPDGGQPKMRIRC---------------------- 265 (314)
T ss_dssp CCCSSCEEEEEEEBT-------TC------CEEEEEETTTEEEEECTTCBSCSEEEEC----------------------
T ss_pred cccccccceeeEEec-------CC------cEEEEEcCCCEEEEEeCCCCEEEEEEEC----------------------
Confidence 22 223456899988 88 6777777789999999876654433322
Q ss_pred eecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCe---EEEEECCCeEEEEeCCCCC
Q 008939 459 PVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQES---VLTVCREGHIKIWMRPGVA 516 (548)
Q Consensus 459 ~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~---l~t~s~Dg~I~iW~~~~~~ 516 (548)
.....++++|.||. ++|.+.+|.|...+++..-
T Consensus 266 -------------------------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 266 -------------------------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp -------------------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred -------------------------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 23567899999973 5777888999888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.77 E-value=6.5e-06 Score=77.83 Aligned_cols=222 Identities=16% Similarity=0.118 Sum_probs=131.8
Q ss_pred CceeEEeCCCCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC--CcEEEEEeeec
Q 008939 132 SMTNTNFDGKGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS--GDVYSVSLRQQ 208 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d--g~I~iwdl~~~ 208 (548)
.+..++|+++|++.++...+ .|+.|+.+... ....+.-....+..++|+++ +.++++...+ ....++.+...
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~--~~~~~~~~~~~p~gla~~~d---G~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKD---GRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTT---SCEEEEECTTSSSCCEEEEECTT
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCe--EEEEEeCCCCCeeEEEECCC---CCEEEEecCCCccceeEEEEcCC
Confidence 34578999999977765544 88888877632 34444445567899999998 6666554332 22333333221
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC----CcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD----GNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
...+..... . ......++.+++.++|. +.++-... ..-.+|.+..++
T Consensus 116 ----~~~~~~~~~---~-~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg-------------------- 166 (319)
T d2dg1a1 116 ----GDNLQDIIE---D-LSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-------------------- 166 (319)
T ss_dssp ----SCSCEEEEC---S-SSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--------------------
T ss_pred ----Cceeeeecc---C-CCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--------------------
Confidence 111111110 0 01234578899999997 55443221 111233332211
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCC-eEEEe-------eeecCCceEEEEEccCCCE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKE-QLICG-------GKSYYGALLCCAWSMDGKY 355 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~-~~~~~-------~~~~~~~v~~l~~spdg~~ 355 (548)
..+..+...-...+.++|+|+++.|+.+ +..+.|..||+... ..... ........-.+++.++|++
T Consensus 167 -----~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l 241 (319)
T d2dg1a1 167 -----RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 241 (319)
T ss_dssp -----CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred -----ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence 1122222222456789999999866555 56789999998632 11111 1111223567999999998
Q ss_pred EEEEeCCCeEEEEECCCceeEEecc------CCCCCeEEEEEec
Q 008939 356 ILTGGEDDLVQVWSMEDRKVVAWGE------GHNSWVSGVAFDS 393 (548)
Q Consensus 356 l~sgs~dg~I~vwd~~~~~~~~~~~------~h~~~V~~v~~~p 393 (548)
.++....+.|.+||- +++.+..+. ++...+++++|.|
T Consensus 242 ~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~ 284 (319)
T d2dg1a1 242 YVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 284 (319)
T ss_dssp EEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred EEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence 888888999999995 688777664 3445678999987
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-05 Score=80.07 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=124.3
Q ss_pred EecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE---------e
Q 008939 180 AFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG---------H 250 (548)
Q Consensus 180 ~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~---------~ 250 (548)
.|.++ +.+ +.-..+|.|.+||+.+.. .+.++.. .......+....|+||++ .++.. +
T Consensus 23 ~W~~~---~~~-~~~~~~g~i~~~~~~~~~---~~~l~~~------~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s 88 (465)
T d1xfda1 23 KWISD---TEF-IYREQKGTVRLWNVETNT---STVLIEG------KKIESLRAIRYEISPDRE-YALFSYNVEPIYQHS 88 (465)
T ss_dssp CBSSS---SCB-CCCCSSSCEEEBCGGGCC---CEEEECT------TTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSC
T ss_pred EEeCC---CcE-EEEeCCCcEEEEECCCCC---EEEEEcC------ccccccccceeEECCCCC-eEEEEEcccceeEee
Confidence 45555 333 334567889999887621 1112111 112344677889999999 55544 3
Q ss_pred CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCC
Q 008939 251 ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSK 330 (548)
Q Consensus 251 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~ 330 (548)
..+.+.+||+.+... ...... ......+....|||||+.||... ++.|.+.+...
T Consensus 89 ~~~~~~i~d~~~~~~-~~l~~~-----------------------~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 89 YTGYYVLSKIPHGDP-QSLDPP-----------------------EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp CCSEEEEEESSSCCC-EECCCT-----------------------TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred ccccEEEEEccCCce-eeccCc-----------------------cCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence 357889999876321 111000 01123455688999999999886 67899998876
Q ss_pred CeEEEeee-ecCC-----------------ceEEEEEccCCCEEEEEeCC-Ce---------------------------
Q 008939 331 EQLICGGK-SYYG-----------------ALLCCAWSMDGKYILTGGED-DL--------------------------- 364 (548)
Q Consensus 331 ~~~~~~~~-~~~~-----------------~v~~l~~spdg~~l~sgs~d-g~--------------------------- 364 (548)
++.+.... +..+ .-..+-|||||++||....| ..
T Consensus 144 ~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~ 223 (465)
T d1xfda1 144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (465)
T ss_dssp SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCC
Confidence 65443321 1111 11467799999999876422 22
Q ss_pred ------EEEEECCCceeEEec------cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe-CC---CeEEEEECCCC
Q 008939 365 ------VQVWSMEDRKVVAWG------EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG-QD---TRLLLWDLEMD 428 (548)
Q Consensus 365 ------I~vwd~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~-~D---g~i~lwd~~~~ 428 (548)
+.++|++.+...... ......+..+.|.| |+ .+++... .+ ..|.++|..++
T Consensus 224 ~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-------d~------~~~~~~~nR~q~~~~i~~~d~~tg 290 (465)
T d1xfda1 224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-------ST------KVAVTWLNRAQNVSILTLCDATTG 290 (465)
T ss_dssp CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-------SS------EEEEEEEETTSCEEEEEEEETTTC
T ss_pred CCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-------CC------eEEEEEEccccccceEEEEcCCCC
Confidence 344454433221111 11223467788887 77 4444432 22 36888999999
Q ss_pred eEEeeeecCC------CCCCceecCCCC
Q 008939 429 EIVVPLRRGP------LGGSPTFSTGSQ 450 (548)
Q Consensus 429 ~~~~~~~~~~------~~~~~~~~~~~~ 450 (548)
++...+.... ....+.+++++.
T Consensus 291 ~~~~~~~e~~~~wv~~~~~~p~~~~dg~ 318 (465)
T d1xfda1 291 VCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (465)
T ss_dssp CEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred cEEEEEEEcCCceEeccCCceeEccCCC
Confidence 8776554321 223456666664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=4.4e-05 Score=71.86 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=123.2
Q ss_pred ceEEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC--C
Q 008939 176 PVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD--G 253 (548)
Q Consensus 176 ~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d--g 253 (548)
.-.++|+++ ++++++-...+.|+.|+... +....... ........|++.+++. ++++...+ .
T Consensus 42 lEG~~~D~~---G~Ly~~D~~~g~I~ri~p~g------~~~~~~~~------~~~~~p~gla~~~dG~-l~va~~~~~~~ 105 (319)
T d2dg1a1 42 LEGLNFDRQ---GQLFLLDVFEGNIFKINPET------KEIKRPFV------SHKANPAAIKIHKDGR-LFVCYLGDFKS 105 (319)
T ss_dssp EEEEEECTT---SCEEEEETTTCEEEEECTTT------CCEEEEEE------CSSSSEEEEEECTTSC-EEEEECTTSSS
T ss_pred cEeCEECCC---CCEEEEECCCCEEEEEECCC------CeEEEEEe------CCCCCeeEEEECCCCC-EEEEecCCCcc
Confidence 347788877 77777777888888887654 11111110 0244578999999998 66654432 3
Q ss_pred cEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC------CCeEEEEe
Q 008939 254 NLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR------DGYLRVFD 327 (548)
Q Consensus 254 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~------dg~v~vwd 327 (548)
...++.+...+....... .. ..-...++.+++.++|++.++-.. .+.+..++
T Consensus 106 ~~~i~~~~~~~~~~~~~~--~~--------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~ 163 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDII--ED--------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 163 (319)
T ss_dssp CCEEEEECTTSCSCEEEE--CS--------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred ceeEEEEcCCCceeeeec--cC--------------------CCcccCCcceeEEeccceeecccccccccCcceeEEEe
Confidence 334444433221110000 00 000135778999999986665422 13355555
Q ss_pred CCCCeEEEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCCc-eeE-------EeccCCCCCeEEEEEecCCCCC
Q 008939 328 YSKEQLICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMEDR-KVV-------AWGEGHNSWVSGVAFDSYWSQP 398 (548)
Q Consensus 328 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~-~~~-------~~~~~h~~~V~~v~~~p~~~~~ 398 (548)
...+.. ..+.......+.++|+||++.|+ +-+..+.|..||++.. ... .........-..|++++
T Consensus 164 ~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~----- 237 (319)
T d2dg1a1 164 PDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS----- 237 (319)
T ss_dssp TTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-----
T ss_pred ccccee-EEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-----
Confidence 543332 22222334467899999998664 4556789999998642 111 11111222356899998
Q ss_pred CCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 399 NSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 399 ~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
+| ++.++....+.|.+||- .++.+..+..
T Consensus 238 --~G------~l~Va~~~~g~V~~~~p-~G~~l~~i~~ 266 (319)
T d2dg1a1 238 --DD------NLYVAMYGQGRVLVFNK-RGYPIGQILI 266 (319)
T ss_dssp --TC------CEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred --CC------CEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence 88 67788888999999995 6887776654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=0.00033 Score=64.80 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=124.4
Q ss_pred EEEecCCCCCCceEEEEEcCCcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEE
Q 008939 178 CHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYV 257 (548)
Q Consensus 178 ~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~v 257 (548)
+..|++. ++.++.+-...+.|+.||..+. + .. ... ....+.++++.+++. |++++.+ .|.+
T Consensus 22 gp~wd~~--~~~l~wvDi~~~~I~r~d~~~g-----~-~~-~~~-------~~~~~~~i~~~~dg~--l~va~~~-gl~~ 82 (295)
T d2ghsa1 22 GPTFDPA--SGTAWWFNILERELHELHLASG-----R-KT-VHA-------LPFMGSALAKISDSK--QLIASDD-GLFL 82 (295)
T ss_dssp EEEEETT--TTEEEEEEGGGTEEEEEETTTT-----E-EE-EEE-------CSSCEEEEEEEETTE--EEEEETT-EEEE
T ss_pred CCeEECC--CCEEEEEECCCCEEEEEECCCC-----e-EE-EEE-------CCCCcEEEEEecCCC--EEEEEeC-ccEE
Confidence 3456654 2445555556778888887652 1 11 111 245678999999886 4445555 4888
Q ss_pred EEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEEC----CCeEEEEeCCCCeE
Q 008939 258 YEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGR----DGYLRVFDYSKEQL 333 (548)
Q Consensus 258 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~v~vwd~~~~~~ 333 (548)
+|..+.. ...... ... .. ....++.+.+.|+|++.++... .+.-.+|.+..++.
T Consensus 83 ~d~~tg~-~~~l~~-~~~-------------~~-------~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~ 140 (295)
T d2ghsa1 83 RDTATGV-LTLHAE-LES-------------DL-------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV 140 (295)
T ss_dssp EETTTCC-EEEEEC-SST-------------TC-------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE
T ss_pred eecccce-eeEEee-eec-------------CC-------CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE
Confidence 8987521 110000 000 00 0134788999999987666532 23456677767765
Q ss_pred EEeeeecCCceEEEEEccCCCEEE-EEeCCCeEEEEECCCc--------eeEEeccCCCCCeEEEEEecCCCCCCCCCCc
Q 008939 334 ICGGKSYYGALLCCAWSMDGKYIL-TGGEDDLVQVWSMEDR--------KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTA 404 (548)
Q Consensus 334 ~~~~~~~~~~v~~l~~spdg~~l~-sgs~dg~I~vwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~ 404 (548)
...... ....+.++|+++++.++ +-+..+.|..|+++.. .....+.+.......++++. +|
T Consensus 141 ~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-------~G-- 210 (295)
T d2ghsa1 141 TKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-------EG-- 210 (295)
T ss_dssp EEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-------TS--
T ss_pred EEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-------CC--
Confidence 544443 34567899999998654 5556788999987531 12223334456678899988 88
Q ss_pred cceeEEEEEEeCCCeEEEEECCCCeEEeeeec
Q 008939 405 ETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRR 436 (548)
Q Consensus 405 ~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~ 436 (548)
++.++.-..+.|..||- .++.+..+..
T Consensus 211 ----nlWva~~~~g~V~~~dp-~G~~~~~i~l 237 (295)
T d2ghsa1 211 ----HIWNARWGEGAVDRYDT-DGNHIARYEV 237 (295)
T ss_dssp ----CEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred ----CEEeeeeCCCceEEecC-CCcEeeEecC
Confidence 56666667788999994 5776665544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.32 E-value=0.00042 Score=64.06 Aligned_cols=212 Identities=16% Similarity=0.102 Sum_probs=131.5
Q ss_pred eEEeCCCCCEEEEe-c-CCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccc
Q 008939 135 NTNFDGKGTYIIFN-V-GDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDV 212 (548)
Q Consensus 135 ~~~~~~~g~~l~~~-~-~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~ 212 (548)
...|++....|.+. . +..|+-||.+++. ...+. .+..+.++++.++ +. |++++.+ .|.++|..+.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~---~~~~~-~~~~~~~i~~~~d---g~-l~va~~~-gl~~~d~~tg---- 88 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGR---KTVHA-LPFMGSALAKISD---SK-QLIASDD-GLFLRDTATG---- 88 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEE-CSSCEEEEEEEET---TE-EEEEETT-EEEEEETTTC----
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCe---EEEEE-CCCCcEEEEEecC---CC-EEEEEeC-ccEEeecccc----
Confidence 35677755555553 2 3489999988643 33333 4567889999887 54 4455554 5888887752
Q ss_pred ccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeC----CCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHA----DGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+...... .........++++.+.|+|. +.++... .+.-.+|.+..+
T Consensus 89 --~~~~l~~--~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g------------------------- 138 (295)
T d2ghsa1 89 --VLTLHAE--LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG------------------------- 138 (295)
T ss_dssp --CEEEEEC--SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT-------------------------
T ss_pred --eeeEEee--eecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCC-------------------------
Confidence 1111111 11111345789999999998 4443221 123344544321
Q ss_pred CCCeeEeeecCCCeEEEEECCCCCEEEEE-ECCCeEEEEeCCCC------e--EEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 289 SNPIARWHICQGSINSIAFSTDGTYLATV-GRDGYLRVFDYSKE------Q--LICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~v~vwd~~~~------~--~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+..+...-...+.++|+++++.++.+ +..+.|..|++... + .........+....+++..+|++.++.
T Consensus 139 --~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~ 216 (295)
T d2ghsa1 139 --KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 216 (295)
T ss_dssp --EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred --cEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence 111111112456789999998866554 45788988887421 1 111222334567889999999988877
Q ss_pred eCCCeEEEEECCCceeEEeccCCCCCeEEEEEe
Q 008939 360 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 392 (548)
Q Consensus 360 s~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~ 392 (548)
-..+.|..||- +++.+..+.-....+++++|-
T Consensus 217 ~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 217 WGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp ETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred eCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 78889999995 588888887666789999994
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=4.7e-05 Score=69.56 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred EeCCC--CCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEc-CC-----cEEEEEeeec
Q 008939 137 NFDGK--GTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLN-SG-----DVYSVSLRQQ 208 (548)
Q Consensus 137 ~~~~~--g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~-dg-----~I~iwdl~~~ 208 (548)
..+|+ |+.+++...+.|++.|+.++. .+.+..++......+|+|+ |+.|+.... ++ .|+++++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPD---G~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGS---TRKIVSNLGVINNARFFPD---GRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCC---EEEEECSSSEEEEEEECTT---SSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCC---EEEEecCCCcccCEEECCC---CCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 44688 999999888899999999744 4566667778888999999 767775543 32 3666665441
Q ss_pred ccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEE
Q 008939 209 LQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVG 249 (548)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~ 249 (548)
. .+.+..... .............|+|+++ .|+..
T Consensus 79 ~---~~~lt~~~~---~~~~~~~~~~~~~~spdg~-~l~~~ 112 (281)
T d1k32a2 79 E---IKRITYFSG---KSTGRRMFTDVAGFDPDGN-LIIST 112 (281)
T ss_dssp E---EEECCCCCE---EEETTEECSEEEEECTTCC-EEEEE
T ss_pred c---eEEeeecCC---CccCccccccccccCCCCC-EEEEE
Confidence 1 111110000 0000123456889999999 55543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=0.00045 Score=68.36 Aligned_cols=252 Identities=12% Similarity=0.147 Sum_probs=127.1
Q ss_pred CceeEEeCCCCCEEEEecC----------CeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEE
Q 008939 132 SMTNTNFDGKGTYIIFNVG----------DAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVY 201 (548)
Q Consensus 132 ~v~~~~~~~~g~~l~~~~~----------d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~ 201 (548)
.+....|+||++++++..+ ..+.|+|+.++...++.........+....|+|+ |..|+... ++.|+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD---G~~iafv~-~~nl~ 137 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK---GQQLIFIF-ENNIY 137 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS---TTCEEEEE-TTEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC---CceEEEEe-cceEE
Confidence 3456789999999887543 2688999997664444433334445667889999 66676654 67888
Q ss_pred EEEeeecccccccceeeeee----ec------cCCcccCcceEEEEEecCCCcEEEEEe-CCCcEEEEEcCCCCCC-CC-
Q 008939 202 SVSLRQQLQDVGKKLVGAHH----YN------KDGSVNNSRCTSVTWVPGGDGAFVVGH-ADGNLYVYEKSKDGAG-DS- 268 (548)
Q Consensus 202 iwdl~~~~~~~~~~~~~~~~----~~------~~~~~~~~~v~~l~~~p~~~~~l~s~~-~dg~v~vwd~~~~~~~-~~- 268 (548)
+.+..... ..++..... ++ .+.+ ....-..+.|+|||+ .||... .+..|..+.+...... ..
T Consensus 138 ~~~~~~~~---~~~lt~~g~~~~i~nG~~d~vyeee-~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~ 212 (465)
T d1xfda1 138 YCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEE-ILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPT 212 (465)
T ss_dssp EESSSSSC---CEEEECCCBTTTEEEEECCHHHHHT-TSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred EEecCCCc---eEEEecccCcceeeccccchhhhhh-hccccceEEECCCCC-eEEEEEecccccceeecccccccccce
Confidence 88765410 011110000 00 0000 011225788999999 555544 5566777765432111 00
Q ss_pred ----Ccccccccc----eeeeecCCCCCCC----CeeEeeecCCCeEEEEECCCCCEEEEEEC-C---CeEEEEeCCCCe
Q 008939 269 ----SFPVIKDQT----QFSVAHPRYSKSN----PIARWHICQGSINSIAFSTDGTYLATVGR-D---GYLRVFDYSKEQ 332 (548)
Q Consensus 269 ----~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-d---g~v~vwd~~~~~ 332 (548)
.++...... .+.+.... .... +.........-+..+.|++++++++.... + ..|.++|..+++
T Consensus 213 ~~~~~Yp~~G~~np~~~l~v~d~~~-~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~ 291 (465)
T d1xfda1 213 VKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (465)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeeeeccccCCCCCceeEEEEecCC-CcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence 011111100 00111000 0000 00000111223677899999886665432 2 258889999987
Q ss_pred EEEeeeec-CCce----EEEEEccCCCEEE--EEe-CCC--eEEEEECC------CceeEEeccCCCCCeEEE-EEec
Q 008939 333 LICGGKSY-YGAL----LCCAWSMDGKYIL--TGG-EDD--LVQVWSME------DRKVVAWGEGHNSWVSGV-AFDS 393 (548)
Q Consensus 333 ~~~~~~~~-~~~v----~~l~~spdg~~l~--sgs-~dg--~I~vwd~~------~~~~~~~~~~h~~~V~~v-~~~p 393 (548)
+...+... ..+| ....|+|||+.++ ..+ .++ .+...++. .++.+..+....-.|..+ .|++
T Consensus 292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~ 369 (465)
T d1xfda1 292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (465)
T ss_dssp EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcC
Confidence 76544332 2222 3457999998432 222 233 33333321 233344444334455554 5776
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.06 E-value=0.00034 Score=63.49 Aligned_cols=217 Identities=13% Similarity=-0.006 Sum_probs=116.6
Q ss_pred EECCC--CCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC-C-----CeEEEEECCCceeEE
Q 008939 306 AFSTD--GTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE-D-----DLVQVWSMEDRKVVA 377 (548)
Q Consensus 306 ~~sp~--g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~-d-----g~I~vwd~~~~~~~~ 377 (548)
..+|| |+.++..+ ++.|.+.|+..++.. .+..+.+.+...+|||||+.||-... + ..|.+++...++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888775 567999999988764 45556677889999999998886432 2 247778887776554
Q ss_pred ecc------CCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeC------CCeEEEEECCCCeEEeeeecCCCCCCcee
Q 008939 378 WGE------GHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQ------DTRLLLWDLEMDEIVVPLRRGPLGGSPTF 445 (548)
Q Consensus 378 ~~~------~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~------Dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 445 (548)
... ..........|+| || +.|+.... ...+...+...+........ .......
T Consensus 83 lt~~~~~~~~~~~~~~~~~~sp-------dg------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 147 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDP-------DG------NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG--PATHILF 147 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECT-------TC------CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSEEEE
T ss_pred eeecCCCccCccccccccccCC-------CC------CEEEEEEccCCCccceeeeeecCCCceeEEecCC--ccceeee
Confidence 322 1223456788999 98 55655432 23456666665554332111 1111111
Q ss_pred cCCCCccc----cCCeeeecccCCCCceeecCCCCceEEeecCCCCeeEEEEeCCeEEEEE-C--CCeEEEEeCCCCCcc
Q 008939 446 STGSQSAH----WDNVCPVGTLQPAPSMRDVPKLSPLVAHRVHTEPLSGLIFTQESVLTVC-R--EGHIKIWMRPGVAES 518 (548)
Q Consensus 446 ~~~~~~~~----~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h~~~V~~l~fspd~l~t~s-~--Dg~I~iW~~~~~~~~ 518 (548)
..+..... ................+.............+........+.++.++... . ...|.++|+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 227 (281)
T d1k32a2 148 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR 227 (281)
T ss_dssp ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE
T ss_pred cCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceE
Confidence 11111000 0000000000000011111111122222234445566677777655444 3 345777788877655
Q ss_pred ccC--CCCcEEEecCCCCceEee
Q 008939 519 QSS--SSETVLSTSSKDKPLLSS 539 (548)
Q Consensus 519 ~~~--~~~~v~~~s~d~~~l~s~ 539 (548)
+.. ....+..+||||+.|+..
T Consensus 228 ~lt~~~~~~~~~~SpDG~~I~f~ 250 (281)
T d1k32a2 228 KHTSFTDYYPRHLNTDGRRILFS 250 (281)
T ss_dssp ECCCCCSSCEEEEEESSSCEEEE
T ss_pred EeecCCCcccccCcCCCCEEEEE
Confidence 432 223455899999998764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=0.0054 Score=55.15 Aligned_cols=238 Identities=9% Similarity=-0.025 Sum_probs=146.1
Q ss_pred CCEEEEecCCeEEEEEccCCCCC---CeEEEecCCCCceEEEecCCCCCCceEEEE-EcCCcEEEEEeeeccccccccee
Q 008939 142 GTYIIFNVGDAIFISDLNSQDKD---PIKSIHFSNSNPVCHAFDQDAKDGHDLLIG-LNSGDVYSVSLRQQLQDVGKKLV 217 (548)
Q Consensus 142 g~~l~~~~~d~v~vwd~~~~~~~---~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g-~~dg~I~iwdl~~~~~~~~~~~~ 217 (548)
|.+|+++....|+-.+++..... +...+......+..++|++. .+.|+.. ..++.|+..+++... .+.+.
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~---~~~iywsd~~~~~I~~~~l~g~~---~~~v~ 74 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV---DKVVYWTDISEPSIGRASLHGGE---PTTII 74 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT---TTEEEEEETTTTEEEEEESSSCC---CEEEE
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeC---CCEEEEEECCCCeEEEEEcccCC---cEEEE
Confidence 56788888888888888754322 22334434446788899987 4455555 455678888876411 11111
Q ss_pred eeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee
Q 008939 218 GAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI 297 (548)
Q Consensus 218 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (548)
. . ....+.+|++..-+.++.++-...+.|.+.+++.... ......
T Consensus 75 ~------~---~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~--------------------------~~l~~~ 119 (263)
T d1npea_ 75 R------Q---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--------------------------RVLFDT 119 (263)
T ss_dssp C------T---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------------EEEECS
T ss_pred E------e---ccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE--------------------------EEEecc
Confidence 0 0 1346788999876764555556678899998874211 001111
Q ss_pred cCCCeEEEEECCCCCEEEEEECC---CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCc
Q 008939 298 CQGSINSIAFSTDGTYLATVGRD---GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDR 373 (548)
Q Consensus 298 h~~~v~~~~~sp~g~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~ 373 (548)
....+..++++|...+|+..... ..|..-++............-.....+++.+.++.|... ...+.|...|++..
T Consensus 120 ~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~ 199 (263)
T d1npea_ 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (263)
T ss_dssp SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence 12567889999976666655432 234444555333222222233456789999887777555 56789999999865
Q ss_pred eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 374 KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 374 ~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
.....+.+... ..+|++. ++ ++..+-...+.|...|..+++.+..+.
T Consensus 200 ~~~~v~~~~~~-P~~lav~--------~~------~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 200 GRRKVLEGLQY-PFAVTSY--------GK------NLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp EEEEEEECCCS-EEEEEEE--------TT------EEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CeEEEECCCCC-cEEEEEE--------CC------EEEEEECCCCEEEEEECCCCccceEEC
Confidence 54444444333 3578775 44 566777778899999999988776553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.92 E-value=0.0066 Score=54.37 Aligned_cols=233 Identities=9% Similarity=0.105 Sum_probs=146.5
Q ss_pred eEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEEeeeccccccc
Q 008939 135 NTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK 214 (548)
Q Consensus 135 ~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwdl~~~~~~~~~ 214 (548)
++-.+|..+.|+.-++.+++|+|+++ +..++...+.. .+..-.|-.+ +.|+. -.+..|+-|+++... +
T Consensus 67 sAIMhP~~~IiALrag~~LQiFnlet--K~klks~~~~e-~VvfWkWis~----~~L~l-VT~taVYHW~~~g~s-~--- 134 (327)
T d1utca2 67 SAIMNPASKVIALKAGKTLQIFNIEM--KSKMKAHTMTD-DVTFWKWISL----NTVAL-VTDNAVYHWSMEGES-Q--- 134 (327)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTT--TEEEEEEECSS-CCCEEEESSS----SEEEE-ECSSEEEEEESSSSC-C---
T ss_pred hhhcCCCCcEEEEecCCeEEEEehhH--hhhhceEEcCC-CcEEEEecCC----CEEEE-EcCCceEEEcccCCC-C---
Confidence 34557888999998888999999998 55888888654 6777777654 13333 344579999996521 1
Q ss_pred ceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCC
Q 008939 215 KLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSK 288 (548)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (548)
+ ...|.+........|-....+++.+.++++|= -.|.+.+|..+.
T Consensus 135 P---~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-------------------------- 185 (327)
T d1utca2 135 P---VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-------------------------- 185 (327)
T ss_dssp C---EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--------------------------
T ss_pred c---hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--------------------------
Confidence 1 22344444456778888888999986555542 237788998875
Q ss_pred CCCeeEeeecCCCeEEEEECCCC---CEEEEEE---CCCeEEEEeCCCCe---E-----EEee--e--ecCCceEEEEEc
Q 008939 289 SNPIARWHICQGSINSIAFSTDG---TYLATVG---RDGYLRVFDYSKEQ---L-----ICGG--K--SYYGALLCCAWS 350 (548)
Q Consensus 289 ~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~~---~dg~v~vwd~~~~~---~-----~~~~--~--~~~~~v~~l~~s 350 (548)
+.-+.+++|.+....+.+.-+. ++++.+. ..+.|+|.++.... . ...+ . .-.+--.++..+
T Consensus 186 -~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 186 -KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp -TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred -CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence 2344455554444444433211 2333332 23678888885421 1 1111 1 112334567788
Q ss_pred cCCCEEEEEeCCCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEE
Q 008939 351 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLL 422 (548)
Q Consensus 351 pdg~~l~sgs~dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~l 422 (548)
+.-..+..-+.-|.|++||++++.++..-+--.+.|..-+-+. +. .=++....+|.|..
T Consensus 265 ~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~-------~~------~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 265 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-------AT------AGIIGVNRKGQVLS 323 (327)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-------TT------TEEEEEETTSEEEE
T ss_pred ccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCC-------CC------ceEEEECCCCeEEE
Confidence 7777888899999999999999999887775666776444443 21 12555556776653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.011 Score=53.04 Aligned_cols=238 Identities=7% Similarity=-0.083 Sum_probs=142.2
Q ss_pred EEEEecCCeEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEE-cCCcEEEEEeeecccccccceeeeeee
Q 008939 144 YIIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGL-NSGDVYSVSLRQQLQDVGKKLVGAHHY 222 (548)
Q Consensus 144 ~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~-~dg~I~iwdl~~~~~~~~~~~~~~~~~ 222 (548)
+|+++....|+-.++++.. ...+.-....+..++|++. .+.|+... ..+.|+..++.............
T Consensus 3 fLl~s~~~~I~~~~l~~~~---~~~~~~~~~~~~~id~d~~---~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~---- 72 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSE---YTSLIPNLRNVVALDTEVA---SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---- 72 (266)
T ss_dssp EEEEECBSSEEEEETTSCC---CEEEECSCSSEEEEEEETT---TTEEEEEETTTTEEEEEEC--------CEEEE----
T ss_pred EEEEECCCeEEEEECCCCc---ceeeeCCCCceEEEEEEeC---CCEEEEEECCCCEEEEEEecCCCCCcceEEEE----
Confidence 5777777789889998644 2333335567888999887 44555544 45667766665311000111110
Q ss_pred ccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCe
Q 008939 223 NKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSI 302 (548)
Q Consensus 223 ~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 302 (548)
. .....+..|++.+.+.++.++-...+.|.+.+++... ....+.......
T Consensus 73 -~---~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--------------------------~~~~~~~~~~~P 122 (266)
T d1ijqa1 73 -S---RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------------------------RKTLFRENGSKP 122 (266)
T ss_dssp -C---SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--------------------------EEEEEECTTCCE
T ss_pred -e---CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce--------------------------EEEEEcCCCCCc
Confidence 0 0234567889988777566666667889999987411 111222223567
Q ss_pred EEEEECCCCCEEEEEE--CCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE-eCCCeEEEEECCCceeEEec
Q 008939 303 NSIAFSTDGTYLATVG--RDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG-GEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 303 ~~~~~sp~g~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg-s~dg~I~vwd~~~~~~~~~~ 379 (548)
..++++|...+|+... ..+.|...++............-.....+++.+.++.|..+ ...+.|...|+........+
T Consensus 123 ~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~ 202 (266)
T d1ijqa1 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 202 (266)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE
Confidence 8899998655665544 33467777775443333333334567899999987766665 55689999998754332222
Q ss_pred --cCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeee
Q 008939 380 --EGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLR 435 (548)
Q Consensus 380 --~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~ 435 (548)
........+|++. ++ +++.+-..++.|...+..++.....+.
T Consensus 203 ~~~~~~~~p~~lav~--------~~------~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 203 EDEKRLAHPFSLAVF--------ED------KVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp ECTTTTSSEEEEEEE--------TT------EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred eCCCcccccEEEEEE--------CC------EEEEEECCCCeEEEEECCCCcceEEEE
Confidence 2233445677775 33 566676678888888888776555444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.89 E-value=0.0074 Score=57.04 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=113.5
Q ss_pred eEEeC---CCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCC-----------
Q 008939 135 NTNFD---GKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSG----------- 198 (548)
Q Consensus 135 ~~~~~---~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg----------- 198 (548)
.++|. +||++++.+... .|-+-|++..+.+.|..+. ....+..+...++.+ ..+++..+...
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~-T~YV~~~~e~~vP~pndg~~l~ 166 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPR-SNYVFCNGEDETPLVNDGTNME 166 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSB-CSEEEEEECSCEESSCSSSSTT
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCC-eEEEEccCccccccCCCCcccc
Confidence 34444 489999997654 8999999874422233332 233455555544422 45666655532
Q ss_pred -------cEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC-C--------------cEE
Q 008939 199 -------DVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD-G--------------NLY 256 (548)
Q Consensus 199 -------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d-g--------------~v~ 256 (548)
.+..+|..+ .++..... -......+.++++|+ ++++.+.+ . .+.
T Consensus 167 d~~~y~~~~t~ID~~t------m~V~~QV~-------V~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~ 232 (459)
T d1fwxa2 167 DVANYVNVFTAVDADK------WEVAWQVL-------VSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIV 232 (459)
T ss_dssp CGG-EEEEEEEEETTT------TEEEEEEE-------ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred chhhcceEEEEEecCC------ceEEEEee-------eCCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEE
Confidence 134455543 22222222 234566889999999 55554432 1 233
Q ss_pred EEEcCCCCCCCCCccccccc-----cee-eeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE-CCCeEEEEeCC
Q 008939 257 VYEKSKDGAGDSSFPVIKDQ-----TQF-SVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG-RDGYLRVFDYS 329 (548)
Q Consensus 257 vwd~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~v~vwd~~ 329 (548)
+++...... ..++. ... .+..........++.+... ...+.+.++|||+++++++ .+.++.|+|++
T Consensus 233 V~n~~rie~------av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 233 VFNIAEIEK------AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp EEEHHHHHH------HHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred EechHHhHH------hhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence 343321000 00000 000 0111111111222222222 3467899999999987765 68899999996
Q ss_pred CCe------------EEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 008939 330 KEQ------------LICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMED 372 (548)
Q Consensus 330 ~~~------------~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~ 372 (548)
+-. .....+ ..-.-+..+|...|.-..+---|..|.-|++..
T Consensus 306 Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 306 RFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp GHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred hhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 321 111111 222345678888887666677899999999853
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.77 E-value=0.17 Score=45.07 Aligned_cols=210 Identities=13% Similarity=0.142 Sum_probs=117.6
Q ss_pred CCCceeEEeCCCCCEEEEecCCeEEEEEccCCCCCCeEEEecCC----CCceEEEecCCCCCCceEEEEE---c----CC
Q 008939 130 STSMTNTNFDGKGTYIIFNVGDAIFISDLNSQDKDPIKSIHFSN----SNPVCHAFDQDAKDGHDLLIGL---N----SG 198 (548)
Q Consensus 130 ~~~v~~~~~~~~g~~l~~~~~d~v~vwd~~~~~~~~i~~~~~~~----~~~~~~~~~p~~~~~~~l~~g~---~----dg 198 (548)
.+.|..-.|-. .+.|+.-..+.|+-|+++.. ..|++-+.-++ ..+..-..+++ .+.++..+ . .|
T Consensus 102 ~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~-s~P~k~fdR~~~L~~~QIInY~~d~~---~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 102 TDDVTFWKWIS-LNTVALVTDNAVYHWSMEGE-SQPVKMFDRHSSLAGCQIINYRTDAK---QKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp SSCCCEEEESS-SSEEEEECSSEEEEEESSSS-CCCEEEEECCGGGTTCEEEEEEECTT---SCEEEEEEEEEETTEEEE
T ss_pred CCCcEEEEecC-CCEEEEEcCCceEEEcccCC-CCchhhhhhcccccCceEEEEEECCC---CCEEEEEeEecCCCceeE
Confidence 45666666654 34566677889999999654 46877776544 34555555555 44443322 2 25
Q ss_pred cEEEEEeeecccccccc-eeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccc
Q 008939 199 DVYSVSLRQQLQDVGKK-LVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQT 277 (548)
Q Consensus 199 ~I~iwdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 277 (548)
.+.+|+.+....+..+- ......+.-++..+...+.|.+.- +...+++.|.++.........++....
T Consensus 177 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r---------~~~~~kLhIiEig~~~~g~~~f~kk~v-- 245 (327)
T d1utca2 177 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR---------GQAGGKLHIIEVGTPPTGNQPFPKKAV-- 245 (327)
T ss_dssp EEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE---------ETTEEEEEEEECSCCCTTCCCCCCEEE--
T ss_pred EEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC---------CCCCcEEEEEEcCCCccCCCCCcceeE--
Confidence 68888887643222111 111222222333333344444331 123378999998764332232221110
Q ss_pred eeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEE
Q 008939 278 QFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYIL 357 (548)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 357 (548)
...+.. +.-.+-..++..++.-..++..+.-|.|.+||++++.++..-+--...|...+-..+..-++
T Consensus 246 di~fpp------------ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~ 313 (327)
T d1utca2 246 DVFFPP------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII 313 (327)
T ss_dssp ECCCCT------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred EEECCc------------cccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEE
Confidence 000000 00124455788888777889999999999999999999887665566666555444444455
Q ss_pred EEeCCCeEEE
Q 008939 358 TGGEDDLVQV 367 (548)
Q Consensus 358 sgs~dg~I~v 367 (548)
.-..+|.|..
T Consensus 314 ~VNr~GqVl~ 323 (327)
T d1utca2 314 GVNRKGQVLS 323 (327)
T ss_dssp EEETTSEEEE
T ss_pred EECCCCeEEE
Confidence 5556666543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.61 E-value=0.049 Score=51.24 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=46.4
Q ss_pred eeEEeCCCCCEEEEecCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC------CcEEEEEe
Q 008939 134 TNTNFDGKGTYIIFNVGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS------GDVYSVSL 205 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d------g~I~iwdl 205 (548)
...++.++|.+++.++.+ .+.+||..+....++..+.... .-...+..++ +..+++|+.+ ..+.+||.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~d---G~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSD---GRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTT---SCEEEECCCCCSSSCCCCEEEEET
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecC---CceeeeccccccccccceeeeecC
Confidence 356788999999987654 8999999875533332222111 2234455555 6778887653 35889998
Q ss_pred eeccc
Q 008939 206 RQQLQ 210 (548)
Q Consensus 206 ~~~~~ 210 (548)
.+..+
T Consensus 155 ~~~~W 159 (387)
T d1k3ia3 155 SSKTW 159 (387)
T ss_dssp TTTEE
T ss_pred CCCce
Confidence 77433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.22 Score=44.02 Aligned_cols=162 Identities=7% Similarity=-0.100 Sum_probs=98.0
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..|+|.+..+.++.+-..++.|+..+++.... ..........+.++++..
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~--------------------------~~v~~~~~~~p~~iAvD~ 88 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--------------------------TTIIRQDLGSPEGIALDH 88 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--------------------------EEEECTTCCCEEEEEEET
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc--------------------------EEEEEeccccccEEEEec
Confidence 445778999988874555545667788888764211 111111124678899987
Q ss_pred CCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeC---CCeEEEEECCCceeEEeccCCCCC
Q 008939 310 DGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGE---DDLVQVWSMEDRKVVAWGEGHNSW 385 (548)
Q Consensus 310 ~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~---dg~I~vwd~~~~~~~~~~~~h~~~ 385 (548)
-+..|+.+ ...+.|.+.++........+.........+++.|...+|+.... ...|..-+++...........-..
T Consensus 89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~ 168 (263)
T d1npea_ 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168 (263)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccc
Confidence 55555544 45678999999755433333333456889999997776665432 223555566544333333333356
Q ss_pred eEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 386 VSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 386 V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
..+|++++ .++ ++..+-...+.|...|+....
T Consensus 169 P~glaiD~-------~~~-----~lYw~d~~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 169 PNGLTFDA-------FSS-----QLCWVDAGTHRAECLNPAQPG 200 (263)
T ss_dssp EEEEEEET-------TTT-----EEEEEETTTTEEEEEETTEEE
T ss_pred cceEEEee-------cCc-----EEEEEeCCCCEEEEEECCCCC
Confidence 68899987 441 344555567788888876443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.37 E-value=0.22 Score=49.65 Aligned_cols=32 Identities=13% Similarity=-0.127 Sum_probs=27.1
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCCCCC
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGPLGG 441 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~~~~ 441 (548)
+++.++.|+.++.+|.++|+.+.+++......
T Consensus 477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~ 508 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEECCCCce
Confidence 67779999999999999999999988754433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.28 E-value=0.11 Score=48.78 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=89.7
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeee-cCCCeEEEEECC--CCCEEEEE
Q 008939 241 GGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHI-CQGSINSIAFST--DGTYLATV 317 (548)
Q Consensus 241 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp--~g~~l~s~ 317 (548)
||+.+|+.-..+++|.+.|++.... .+.... -...+..+...+ +-.|++..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt--------------------------~kIi~iPn~~~~HG~r~~~~p~T~YV~~~ 151 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKC--------------------------DAILEIPNAKGIHGLRPQKWPRSNYVFCN 151 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE--------------------------EEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceee--------------------------eEEEecCCCCCCceeecccCCCeEEEEcc
Confidence 6774555566889999999986211 111111 114566666654 44577766
Q ss_pred ECC------------------CeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCC---------------e
Q 008939 318 GRD------------------GYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD---------------L 364 (548)
Q Consensus 318 ~~d------------------g~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg---------------~ 364 (548)
+.+ +.+.++|..+.+....+.- .+....+++++||+++++.+.+. .
T Consensus 152 ~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~ 230 (459)
T d1fwxa2 152 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 230 (459)
T ss_dssp ECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred CccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceE
Confidence 653 2367889999888776653 34567899999999988876431 2
Q ss_pred EEEEEC-----------------------CCc---eeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC
Q 008939 365 VQVWSM-----------------------EDR---KVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT 418 (548)
Q Consensus 365 I~vwd~-----------------------~~~---~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg 418 (548)
+.++++ ++. ..+..+. -......+.++| ||. +.++++..+.
T Consensus 231 i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSP-------DGK-----yi~VaGKLs~ 297 (459)
T d1fwxa2 231 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAP-------DKK-----HLCVAGKLSP 297 (459)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECT-------TSS-----EEEEECTTSS
T ss_pred EEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECC-------CCC-----EEEEeCCcCC
Confidence 444443 221 0111111 112234678888 994 5666777799
Q ss_pred eEEEEECCC
Q 008939 419 RLLLWDLEM 427 (548)
Q Consensus 419 ~i~lwd~~~ 427 (548)
.+.++|++.
T Consensus 298 tVSViD~~K 306 (459)
T d1fwxa2 298 TVTVLDVTR 306 (459)
T ss_dssp BEEEEEGGG
T ss_pred cEEEEEehh
Confidence 999999874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.19 E-value=0.4 Score=44.45 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=68.2
Q ss_pred eCCCCCEEEEecCC------------eEEEEEccCCCCCCeEEEec-CCCCceEEEecCCCCCCceEEEEEcC-CcEEEE
Q 008939 138 FDGKGTYIIFNVGD------------AIFISDLNSQDKDPIKSIHF-SNSNPVCHAFDQDAKDGHDLLIGLNS-GDVYSV 203 (548)
Q Consensus 138 ~~~~g~~l~~~~~d------------~v~vwd~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~~~~~l~~g~~d-g~I~iw 203 (548)
...+|+++++++.+ .+.+||..++....+..... +...+..+++.++ +.+++.|+.+ ..+.+|
T Consensus 27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~---g~i~v~Gg~~~~~~~~y 103 (387)
T d1k3ia3 27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN---GQIVVTGGNDAKKTSLY 103 (387)
T ss_dssp ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT---SCEEEECSSSTTCEEEE
T ss_pred EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC---CcEEEeecCCCcceeEe
Confidence 34577888875521 36799999877655544432 2223455677777 7778887665 579999
Q ss_pred EeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCC------CcEEEEEcCC
Q 008939 204 SLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHAD------GNLYVYEKSK 262 (548)
Q Consensus 204 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~d------g~v~vwd~~~ 262 (548)
|..+..+....... ....-..++..+++. +++.++.+ ..+.+||..+
T Consensus 104 d~~~~~w~~~~~~~-----------~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 104 DSSSDSWIPGPDMQ-----------VARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp EGGGTEEEECCCCS-----------SCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCccCccccccccc-----------ccccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence 98874332211110 111223566777888 77777643 3688999876
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.41 Score=42.19 Aligned_cols=165 Identities=5% Similarity=-0.092 Sum_probs=97.2
Q ss_pred CcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECC
Q 008939 230 NSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFST 309 (548)
Q Consensus 230 ~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 309 (548)
...+..|+|.+..+.++.+=..++.|+-.+++...... ............+.++++.+
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~----------------------~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS----------------------SYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------------CEEEECSSCSCCCEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc----------------------ceEEEEeCCCCCcceEEEee
Confidence 44567899998887344443455667666664311100 00011111124567888887
Q ss_pred CCCEEEEE-ECCCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEe--CCCeEEEEECCCceeEEeccCCCCCe
Q 008939 310 DGTYLATV-GRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGG--EDDLVQVWSMEDRKVVAWGEGHNSWV 386 (548)
Q Consensus 310 ~g~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs--~dg~I~vwd~~~~~~~~~~~~h~~~V 386 (548)
-+..|+.+ ...+.|.+.++........+.........+++.|...+|.... ..+.|...++............-...
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p 166 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccccee
Confidence 55555554 4567899999986655444555556788999998665655443 34567777886544443333334567
Q ss_pred EEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC
Q 008939 387 SGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD 428 (548)
Q Consensus 387 ~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~ 428 (548)
.++++++ .++ ++..+-...+.|...|+...
T Consensus 167 ~gl~iD~-------~~~-----~lYw~d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 167 NGITLDL-------LSG-----RLYWVDSKLHSISSIDVNGG 196 (266)
T ss_dssp EEEEEET-------TTT-----EEEEEETTTTEEEEEETTSC
T ss_pred eEEEeec-------ccc-----EEEEecCCcCEEEEEECCCC
Confidence 8899987 441 34455556677777777543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.03 E-value=0.84 Score=45.17 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=38.1
Q ss_pred eEEEEeCCCCeEEEeeeecCC---------ceEEEEEccCC---CEEEEEeCCCeEEEEECCCceeEEec
Q 008939 322 YLRVFDYSKEQLICGGKSYYG---------ALLCCAWSMDG---KYILTGGEDDLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 322 ~v~vwd~~~~~~~~~~~~~~~---------~v~~l~~spdg---~~l~sgs~dg~I~vwd~~~~~~~~~~ 379 (548)
.|...|+++++.+..++.... +........++ ..++.++.+|.+.++|..+++.+...
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~ 353 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccc
Confidence 577778888887766543211 12222333344 35777889999999999999876544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.91 E-value=0.63 Score=42.71 Aligned_cols=125 Identities=15% Similarity=0.248 Sum_probs=81.5
Q ss_pred CeEEEEE--CC-CCC-EEEEEECCCeEEEEeCC---CC----eEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEE
Q 008939 301 SINSIAF--ST-DGT-YLATVGRDGYLRVFDYS---KE----QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWS 369 (548)
Q Consensus 301 ~v~~~~~--sp-~g~-~l~s~~~dg~v~vwd~~---~~----~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd 369 (548)
.+..+|+ ++ ++. ++++...+|.+..|.+. .+ +++..+. -...+..|.+.+....|+.+-++.-|..++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEE
Confidence 4667776 66 455 45566678999888763 22 3344444 345788999999999999998888777776
Q ss_pred CCC-----ceeEEeccC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCC-eEEeeee
Q 008939 370 MED-----RKVVAWGEG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMD-EIVVPLR 435 (548)
Q Consensus 370 ~~~-----~~~~~~~~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~-~~~~~~~ 435 (548)
.+- ...+....+ ...-+..|+.-. .. ++ ..++|+|.-.+.+..+||.... +.+..++
T Consensus 208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~---~~--~~----~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYY---AA--DG----KGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp SSTTSCSCCEEEEECSSSSCCSCEEEEEEEE---CG--GG----CEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eccCCCccceeeecccCccccCCccccEEEE---cC--CC----CeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 642 233333322 456788887643 00 21 2278888888999999998874 4444443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.83 E-value=0.81 Score=43.38 Aligned_cols=253 Identities=11% Similarity=0.104 Sum_probs=122.5
Q ss_pred eeEEeCCCCCEEEEe----cCC--eEEEEEccCCCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcC----------
Q 008939 134 TNTNFDGKGTYIIFN----VGD--AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNS---------- 197 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~----~~d--~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~d---------- 197 (548)
...+++|++++++++ +.+ .++++|+.++. .+. ..+.......++|.++ +..|+....+
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~--~~~-~~i~~~~~~~~~W~~D---~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELP-DVLERVKFSCMAWTHD---GKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEE-EEEEEECSCCEEECTT---SSEEEEEECCCCSSCCSSSC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcce--ecc-cccccccccceEEcCC---CCEEEEEEeccccCcccccc
Confidence 346789999999973 333 89999999865 332 1122223356789888 5556554332
Q ss_pred ------CcEEEEEeeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEe--CCCc--EEEEEcCCCCCCC
Q 008939 198 ------GDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGH--ADGN--LYVYEKSKDGAGD 267 (548)
Q Consensus 198 ------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~--~dg~--v~vwd~~~~~~~~ 267 (548)
..|+.+.+.+.. ....++ +... .....+..+..++++..+++... .+.. +++.|+.......
T Consensus 202 ~~~~~~~~v~~h~lgt~~--~~d~~v----~~e~--d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~ 273 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQ--SEDILC----AEFP--DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (430)
T ss_dssp CCCCCCCEEEEEETTSCG--GGCEEE----ECCT--TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccCCcceEEEEECCCCc--cccccc----cccc--cCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc
Confidence 247777766521 111111 1110 12334667778888884443332 2333 4444544321111
Q ss_pred CCcccccccceeeeecCCCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEE---CCCeEEEEeCCCCeE---EEeeeecC
Q 008939 268 SSFPVIKDQTQFSVAHPRYSKSNPIARWHICQGSINSIAFSTDGTYLATVG---RDGYLRVFDYSKEQL---ICGGKSYY 341 (548)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~v~vwd~~~~~~---~~~~~~~~ 341 (548)
.... ........-...+.-+. +.++.+++... .++.|...++..... ...+..+.
T Consensus 274 ~~~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~ 334 (430)
T d1qfma1 274 TGIL------------------KWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (430)
T ss_dssp CSSC------------------CCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCS
T ss_pred cccc------------------ceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccC
Confidence 0000 00111111111222221 12222333222 235566666654321 11233344
Q ss_pred CceEEEEEccCCCEEEEE-eCCC--eEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEe--C
Q 008939 342 GALLCCAWSMDGKYILTG-GEDD--LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVG--Q 416 (548)
Q Consensus 342 ~~v~~l~~spdg~~l~sg-s~dg--~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~--~ 416 (548)
..+..-.+...+.+|+.. -.++ .|+++++.++.....+....+.|..+...+ +. .. .++...+ .
T Consensus 335 ~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~-------~~--~~--~~~~~ss~~t 403 (430)
T d1qfma1 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK-------KD--TE--IFYQFTSFLS 403 (430)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT-------TC--SE--EEEEEECSSC
T ss_pred cceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCC-------CC--CE--EEEEEcCCCC
Confidence 445444444445556554 3554 588899988776555444455565554443 22 11 1222222 2
Q ss_pred CCeEEEEECCCCeE
Q 008939 417 DTRLLLWDLEMDEI 430 (548)
Q Consensus 417 Dg~i~lwd~~~~~~ 430 (548)
-.++..+|+.+++.
T Consensus 404 P~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 404 PGIIYHCDLTKEEL 417 (430)
T ss_dssp CCEEEEEETTSSSC
T ss_pred CCeEEEEECCCCCc
Confidence 47889999998864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.43 E-value=1.4 Score=43.79 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=25.6
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecCC
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRGP 438 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~~ 438 (548)
+++.+..|+.++.+|.++|+.+.+++...
T Consensus 486 lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 486 LVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence 66679999999999999999999988743
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.38 E-value=1.5 Score=43.28 Aligned_cols=57 Identities=9% Similarity=0.063 Sum_probs=39.7
Q ss_pred CeEEEEeCCCCeEEEeeeecCCc---------eEEEEEccCCC---EEEEEeCCCeEEEEECCCceeEE
Q 008939 321 GYLRVFDYSKEQLICGGKSYYGA---------LLCCAWSMDGK---YILTGGEDDLVQVWSMEDRKVVA 377 (548)
Q Consensus 321 g~v~vwd~~~~~~~~~~~~~~~~---------v~~l~~spdg~---~l~sgs~dg~I~vwd~~~~~~~~ 377 (548)
..+...|.++++++..++..... .....+..+++ .++.++.+|.+.++|.++++.+.
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~ 340 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence 46788899999998877643221 12222333554 46778899999999999998764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.07 E-value=1.1 Score=41.07 Aligned_cols=210 Identities=13% Similarity=0.102 Sum_probs=111.5
Q ss_pred CCCEEEEecCC-eEEEEEccCCCCCCeEEEecCCCCceEEEecC---CCCCCceEEEEEcC----CcEEEEEeeeccccc
Q 008939 141 KGTYIIFNVGD-AIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQ---DAKDGHDLLIGLNS----GDVYSVSLRQQLQDV 212 (548)
Q Consensus 141 ~g~~l~~~~~d-~v~vwd~~~~~~~~i~~~~~~~~~~~~~~~~p---~~~~~~~l~~g~~d----g~I~iwdl~~~~~~~ 212 (548)
+..+|+....+ -|++||++. +.+..+.. ..+.-+..-. -......|++++.. ..|.+|.+....
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~G---~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~--- 110 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLEG---KMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--- 110 (353)
T ss_dssp GGCEEEEEETTSCCEEEETTC---CEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT---
T ss_pred CccEEEEEcCcCCEEEEcCCC---cEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc---
Confidence 44455544444 899999973 25555432 3343333221 01113346666632 257788776311
Q ss_pred ccceeeeeeeccCCcccCcceEEEEE--ecC-CCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCC
Q 008939 213 GKKLVGAHHYNKDGSVNNSRCTSVTW--VPG-GDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKS 289 (548)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~v~~l~~--~p~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (548)
..+................++.+|+ ++. +..++++...+|.+..|.+...+......
T Consensus 111 -~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~------------------- 170 (353)
T d1h6la_ 111 -GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG------------------- 170 (353)
T ss_dssp -TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE-------------------
T ss_pred -cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee-------------------
Confidence 1111100000000001234677777 554 44356777788999999885432211111
Q ss_pred CCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEEEeCC-----CCeEEEeeee--cCCceEEEEEc--cCCC-EE-EE
Q 008939 290 NPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRVFDYS-----KEQLICGGKS--YYGALLCCAWS--MDGK-YI-LT 358 (548)
Q Consensus 290 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~vwd~~-----~~~~~~~~~~--~~~~v~~l~~s--pdg~-~l-~s 358 (548)
..++.|.. ...+..|.+..+...|+.+-.+.-|..++++ .+..+....+ ..+.+..|+.- .+++ +| ++
T Consensus 171 ~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS 249 (353)
T d1h6la_ 171 KKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS 249 (353)
T ss_dssp EEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE
T ss_pred EeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE
Confidence 12333332 2578899999988899999888777777664 1233322221 34567777653 3333 44 44
Q ss_pred EeCCCeEEEEECCCc-eeEEec
Q 008939 359 GGEDDLVQVWSMEDR-KVVAWG 379 (548)
Q Consensus 359 gs~dg~I~vwd~~~~-~~~~~~ 379 (548)
.-.++...|||.+.. +.+..|
T Consensus 250 sQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 250 SQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EGGGTEEEEEESSTTCCEEEEE
T ss_pred cCCCCeEEEEecCCCccccceE
Confidence 445789999999763 555554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.50 E-value=1.1 Score=42.78 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCceeEEeCCCCCEEEEecC-CeEEEEEccCCCCCCeEEEec------CCCCceEEEecCCCCCCceEEEE
Q 008939 131 TSMTNTNFDGKGTYIIFNVG-DAIFISDLNSQDKDPIKSIHF------SNSNPVCHAFDQDAKDGHDLLIG 194 (548)
Q Consensus 131 ~~v~~~~~~~~g~~l~~~~~-d~v~vwd~~~~~~~~i~~~~~------~~~~~~~~~~~p~~~~~~~l~~g 194 (548)
..+..++|.|+|+++++.-. ..|++++..++..+.+..+.. .......++|+|+-.+..+|.+.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 45679999999999988753 588888877654333333321 12345789999986656666654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=1.5 Score=40.47 Aligned_cols=181 Identities=9% Similarity=0.092 Sum_probs=100.8
Q ss_pred eeEEeCCCCCEEEEecCCeEEEEEccC---------CCCCCeEEEecCCCCceEEEecCCCCCCceEEEEEcCCcEEEEE
Q 008939 134 TNTNFDGKGTYIIFNVGDAIFISDLNS---------QDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVS 204 (548)
Q Consensus 134 ~~~~~~~~g~~l~~~~~d~v~vwd~~~---------~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~l~~g~~dg~I~iwd 204 (548)
..++.++...+++.++.+.+.|..++. ......... .-..+..++|+.+ .|++ ..++.+..++
T Consensus 40 ~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d-----~l~v-~~~~~l~~~~ 111 (381)
T d1xipa_ 40 QNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD-----QVLV-STRNALYSLD 111 (381)
T ss_dssp BCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT-----EEEE-EESSEEEEEE
T ss_pred ceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC-----EEEE-EeCCCEEEEE
Confidence 468888888888888888888877432 111112222 2236888999765 3444 4666788887
Q ss_pred eeecccccccceeeeeeeccCCcccCcceEEEEEecCCCcEEEEEeCCCcEEEEEcCCCCCCCCCcccccccceeeeecC
Q 008939 205 LRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSVTWVPGGDGAFVVGHADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHP 284 (548)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (548)
..... ....... ...++..+.++|. .++....+|.+.++++..... . +...
T Consensus 112 ~~~l~-----~~~~~~~-------~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~-~---~~~~---------- 162 (381)
T d1xipa_ 112 LEELS-----EFRTVTS-------FEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-K---QLAQ---------- 162 (381)
T ss_dssp SSSTT-----CEEEEEE-------CSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-E---EEEE----------
T ss_pred eeccc-----ccccccc-------ccccccceecCCc---eeEEEecCCCEEEEEeccCcc-c---cccC----------
Confidence 76521 1111111 2456788888875 466677789999999876311 0 0000
Q ss_pred CCCCCCCeeEeeecCCCeEEEEECCCCCEEEEEECCCeEEE-EeCCCCeEEEeeeecCCceEEEEEccCCCEEEEE
Q 008939 285 RYSKSNPIARWHICQGSINSIAFSTDGTYLATVGRDGYLRV-FDYSKEQLICGGKSYYGALLCCAWSMDGKYILTG 359 (548)
Q Consensus 285 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~v~v-wd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sg 359 (548)
.+..+.. .+.+.+++|++.|+.++++..+. +.+ -++.....+.........+.+|.|-.+..++++-
T Consensus 163 ------~v~~~~~-~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 163 ------NVTSFDV-TNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ------SEEEEEE-CSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ------CcceEEe-cCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 0111111 15688888888888777764332 211 1111111010001123468899998777766654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.08 E-value=3 Score=40.78 Aligned_cols=110 Identities=10% Similarity=0.097 Sum_probs=71.4
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEeeeecC----------------------------------C--ceEEEEEccCCCE
Q 008939 312 TYLATVGRDGYLRVFDYSKEQLICGGKSYY----------------------------------G--ALLCCAWSMDGKY 355 (548)
Q Consensus 312 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----------------------------------~--~v~~l~~spdg~~ 355 (548)
+.++.+..+|.+.++|..+++++...+.-. + .-...+++|+..+
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 356778899999999999998875432110 0 0013456777766
Q ss_pred EEEEeCC------------------------------------CeEEEEECCCceeEEeccCCCCCeE--EEEEecCCCC
Q 008939 356 ILTGGED------------------------------------DLVQVWSMEDRKVVAWGEGHNSWVS--GVAFDSYWSQ 397 (548)
Q Consensus 356 l~sgs~d------------------------------------g~I~vwd~~~~~~~~~~~~h~~~V~--~v~~~p~~~~ 397 (548)
+++...+ +.|.-||+.+++.+-.... ..... .|+- .
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~T-a---- 468 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLST-A---- 468 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-T----
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEE-C----
Confidence 6654322 4567778888876654431 11111 1221 1
Q ss_pred CCCCCCccceeEEEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 398 PNSDGTAETVMYRFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 398 ~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
+| +++.++.|+.++.+|.++|+.+.+++..
T Consensus 469 ---gg-------lVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 469 ---GN-------LVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp ---TT-------EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ---CC-------EEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 34 6778899999999999999999988874
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.97 E-value=3.1 Score=40.63 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=44.0
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeecC
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRVH 484 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~h 484 (548)
|.|.-||+.+++.+.......+...-.+ ......+..|+.++.++.+|..+++.+-.+...
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l------~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTL------STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEE------EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCcee------EECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 5788999999999988876543322222 222355667888899999999999998877753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.34 E-value=1.5 Score=43.39 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred CCeEEEEeCCCCeEEEeeeecCCceEEEEEccCCCEEEEEeCCCeEEEEECCCceeEEecc
Q 008939 320 DGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGE 380 (548)
Q Consensus 320 dg~v~vwd~~~~~~~~~~~~~~~~v~~l~~spdg~~l~sgs~dg~I~vwd~~~~~~~~~~~ 380 (548)
.|.|.-+|+.+++.+.....+. ++..-.++-.+.++++|+.|+.++-+|.++|+.+-+++
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 4789999999999988776443 23222234466788899999999999999999997776
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=1.4 Score=38.46 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=52.8
Q ss_pred CCEEEEEECC-----CeEEEEeCCCCeEEEeeeec-CCceEEEEEccCCCEEEEEeCC-----CeEEEEECCCceeEEec
Q 008939 311 GTYLATVGRD-----GYLRVFDYSKEQLICGGKSY-YGALLCCAWSMDGKYILTGGED-----DLVQVWSMEDRKVVAWG 379 (548)
Q Consensus 311 g~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~sgs~d-----g~I~vwd~~~~~~~~~~ 379 (548)
..+++.++.+ ..+..||..+.+....-... .....++.. .++++++.|+.+ ..+.++|+.+.+....-
T Consensus 149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
T d1zgka1 149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227 (288)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred ecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeeccc
Confidence 3444554432 45788888776543221111 111122222 245566666544 35677888776543321
Q ss_pred cC--CCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCC-----eEEEEECCCCeE
Q 008939 380 EG--HNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDT-----RLLLWDLEMDEI 430 (548)
Q Consensus 380 ~~--h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg-----~i~lwd~~~~~~ 430 (548)
.. -......+.+ ++ ++++.|+.++ .|.+||+.+.+-
T Consensus 228 ~~p~~r~~~~~~~~---------~~------~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 228 PMKHRRSALGITVH---------QG------RIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp CCSSCCBSCEEEEE---------TT------EEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CccCcccceEEEEE---------CC------EEEEEecCCCCeecceEEEEECCCCEE
Confidence 11 1111223333 55 6777777654 378889887653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.16 E-value=3.5 Score=40.42 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=25.2
Q ss_pred EEEEEeCCCeEEEEECCCCeEEeeeecC
Q 008939 410 RFGSVGQDTRLLLWDLEMDEIVVPLRRG 437 (548)
Q Consensus 410 ~l~s~~~Dg~i~lwd~~~~~~~~~~~~~ 437 (548)
++++++.|+.++.+|.++|+.+.+++..
T Consensus 490 lVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 490 VVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 6778899999999999999999988874
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.21 E-value=5.1 Score=36.16 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=89.9
Q ss_pred eEEEEEecCCCcEEEEEe------------CCCcEEEEEcCCCCCCCCCcccccccceeeeecCCCCCCCCeeEeeecCC
Q 008939 233 CTSVTWVPGGDGAFVVGH------------ADGNLYVYEKSKDGAGDSSFPVIKDQTQFSVAHPRYSKSNPIARWHICQG 300 (548)
Q Consensus 233 v~~l~~~p~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 300 (548)
.-+|...|++. .+++++ ..|.|+++|+.........+....... ....-
T Consensus 37 ~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~------------------~~~~f 97 (340)
T d1v04a_ 37 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL------------------DISSF 97 (340)
T ss_dssp CCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSS------------------CGGGC
T ss_pred cceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCC------------------CCcce
Confidence 45778888876 444432 148899999876332222211111000 00001
Q ss_pred CeEEEEE--CCCCC-EEEEEE---CCCeEEEEeCCCC--eEE--Eeeee-cCCceEEEEEccCCCEEEEEeC--------
Q 008939 301 SINSIAF--STDGT-YLATVG---RDGYLRVFDYSKE--QLI--CGGKS-YYGALLCCAWSMDGKYILTGGE-------- 361 (548)
Q Consensus 301 ~v~~~~~--sp~g~-~l~s~~---~dg~v~vwd~~~~--~~~--~~~~~-~~~~v~~l~~spdg~~l~sgs~-------- 361 (548)
....+.+ .++++ +|++.. ....|.+|++... ++. .++.. .....+.+++..++.+++|-..
T Consensus 98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~ 177 (340)
T d1v04a_ 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 177 (340)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHH
T ss_pred eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhh
Confidence 2234443 44565 455554 3467888887533 222 12221 2245789999999988887311
Q ss_pred -------CCeEEEEECCCceeEEeccCCCCCeEEEEEecCCCCCCCCCCccceeEEEEEEeCCCeEEEEECCCCe
Q 008939 362 -------DDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSQPNSDGTAETVMYRFGSVGQDTRLLLWDLEMDE 429 (548)
Q Consensus 362 -------dg~I~vwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~dg~~~~~~~~l~s~~~Dg~i~lwd~~~~~ 429 (548)
-....+|..+.++...... .-..-+.|+++| |++ .++++-...+.|+.|++....
T Consensus 178 ~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~-------d~~-----~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 178 SWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISP-------DGK-----YVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp HHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECT-------TSS-----EEEEEEGGGTEEEEEEECTTS
T ss_pred hhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECC-------CCC-----EEEEEeCCCCeEEEEEeCCCc
Confidence 0123344333333222222 234678999999 873 566777788999999987654
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| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.31 E-value=10 Score=36.82 Aligned_cols=60 Identities=15% Similarity=-0.070 Sum_probs=38.2
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
|.|.-+|+.+++++...+...+...-.+ ......+..|+.++.++.+|..+++.+-.++.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~l------stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVL------ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCE------EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCCCCcccee------EEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 5677888888888877765433322111 12224555677777777788888877766664
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=87.97 E-value=13 Score=36.25 Aligned_cols=60 Identities=12% Similarity=-0.013 Sum_probs=42.8
Q ss_pred CeEEEEECCCCeEEeeeecCCCCCCceecCCCCccccCCeeeecccCCCCceeecCCCCceEEeec
Q 008939 418 TRLLLWDLEMDEIVVPLRRGPLGGSPTFSTGSQSAHWDNVCPVGTLQPAPSMRDVPKLSPLVAHRV 483 (548)
Q Consensus 418 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~~~~~~~d~~~~~~~~~~~~ 483 (548)
|.|.-||+.+++.+.......+...-.++ .....+..|+.++.++.+|..+++.+-.+..
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~ls------TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMA------TAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEE------ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeE------ecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 57899999999998877654333222222 1234566788899999999999999987764
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