Citrus Sinensis ID: 008955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccHccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHEEEHHHEEccccEHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEHEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccEccccccccccccccHHHHccccccccccccccc
matsatgqpqfiastggnrsfsnapliknedadqivvpdktswkNLFAYIGPGFLVSIayidpgnfetdlqsgaqYKYELLWIILVASCAALIIQSLAANLGVVTGKHLaehcrneypkvpnFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFfaelgyakpeaKEVLHglfvpqlkgngatGLAISLLGAMVMPHNLFLHSALVlsrkiprsVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGavcsssninpedqasckdldlnkASFLLRNVLGSWSSKLFAIALLAsgqsstitgtYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFelpfalvpllkftsskvkmgmhANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTThenqhstnesgnaslyslprediasmqlpsrsgtvdid
matsatgqpqfiastggnrsfSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTthenqhstnesGNASLYSLPrediasmqlpsrsgtvdid
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
*******************************ADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNI******SCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLAL****************************************
*****************************************SWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRK***********CKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEA***************************REDIAS*************
********PQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTH*********GNASLYSLPREDIASMQLP*********
******************************DADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHST****NASLYSLPREDIASMQL**********
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MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
Q9SAH8532 Metal transporter Nramp1 yes no 0.972 1.0 0.773 0.0
Q9S9N8527 Metal transporter Nramp6 no no 0.946 0.982 0.790 0.0
Q653V6550 Metal transporter Nramp3 yes no 0.983 0.978 0.731 0.0
Q8H4H5538 Metal transporter Nramp5 no no 0.926 0.942 0.600 1e-172
Q0D7E4518 Metal transporter Nramp1 no no 0.831 0.878 0.610 1e-164
Q6ZG85545 Metal transporter NRAT1 O no no 0.930 0.933 0.510 1e-152
Q5QN13550 Metal transporter Nramp4 no no 0.820 0.816 0.456 1e-119
Q10Q65524 Metal transporter Nramp2 no no 0.820 0.856 0.419 7e-90
Q9FN18512 Metal transporter Nramp4 no no 0.842 0.900 0.404 2e-89
Q869V1533 Metal transporter nramp1 yes no 0.707 0.726 0.443 7e-89
>sp|Q9SAH8|NRAM1_ARATH Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/547 (77%), Positives = 476/547 (87%), Gaps = 15/547 (2%)

Query: 1   MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAY 60
           MA + +G+ QFI+S+GGNRSFSN+PLI+N D++QI+V +K SWKN FAY+GPGFLVSIAY
Sbjct: 1   MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query: 61  IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120
           IDPGNFETDLQ+GA YKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAE CR EY KV
Sbjct: 61  IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query: 121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRK 180
           PNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRK
Sbjct: 121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRK 180

Query: 181 LEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240
           LEFLIAFLVFT+A CFF EL Y+KP+  EVLHGLFVPQLKGNGATGLAISLLGAMVMPHN
Sbjct: 181 LEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240

Query: 241 LFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSS 300
           LFLHSALVLSRKIPRS   I    KEACRFY+IESG AL VAFLINVSVISVSGAVC++ 
Sbjct: 241 LFLHSALVLSRKIPRSASGI----KEACRFYLIESGLALMVAFLINVSVISVSGAVCNAP 296

Query: 301 NINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 360
           N++PED+A+C+DLDLNKASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGF
Sbjct: 297 NLSPEDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 356

Query: 361 LDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFT 420
           LDLRL+PWLRN LTRCLAI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFT
Sbjct: 357 LDLRLEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFT 416

Query: 421 SSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGF 480
           S K KMG H N +AITA+TW+IG LIM IN+YYL +SFIK L H ++KL+ VVF GI GF
Sbjct: 417 SCKTKMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGF 476

Query: 481 SAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSR 540
           + +A+YLA +AYLV RKN+ A+ LL     +N           + +LPR+DI +MQLP R
Sbjct: 477 AGIALYLAAIAYLVFRKNRVATSLLISRDSQN-----------VETLPRQDIVNMQLPCR 525

Query: 541 SGTVDID 547
             T D+D
Sbjct: 526 VSTSDVD 532
High affinity manganese (Mn) transporter involved in Mn acquisition from the soil. Required for Mn uptake into the root in conditions of low Mn availability. Can transport iron (Fe), cadmium (Cd) and cobalt (Co).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2 Back     alignment and function description
>sp|Q653V6|NRAM3_ORYSJ Metal transporter Nramp3 OS=Oryza sativa subsp. japonica GN=NRAMP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1 Back     alignment and function description
>sp|Q0D7E4|NRAM1_ORYSJ Metal transporter Nramp1 OS=Oryza sativa subsp. japonica GN=NRAMP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZG85|NRAT1_ORYSJ Metal transporter NRAT1 OS=Oryza sativa subsp. japonica GN=NRAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q65|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
356550656544 PREDICTED: metal transporter Nramp6-like 0.985 0.990 0.827 0.0
224115800541 nramp transporter [Populus trichocarpa] 0.985 0.996 0.842 0.0
356523294545 PREDICTED: metal transporter Nramp1-like 0.987 0.990 0.823 0.0
356557217546 PREDICTED: metal transporter Nramp6-like 0.985 0.987 0.829 0.0
255572735546 metal transporter, putative [Ricinus com 0.974 0.976 0.849 0.0
356526260550 PREDICTED: metal transporter Nramp6-like 0.985 0.98 0.826 0.0
225465528541 PREDICTED: metal transporter Nramp6 [Vit 0.978 0.988 0.837 0.0
82581291537 NRAMP family metal transporter [Chengiop 0.979 0.998 0.804 0.0
15220858532 metal transporter Nramp1 [Arabidopsis th 0.972 1.0 0.773 0.0
147866830595 hypothetical protein VITISV_034005 [Viti 0.978 0.899 0.757 0.0
>gi|356550656|ref|XP_003543701.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/544 (82%), Positives = 489/544 (89%), Gaps = 5/544 (0%)

Query: 4   SATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDP 63
           S +GQPQFI+STG NRSFSNAPLI+N D +QIVVPD+ SWKNLFAY+GPGFLVSIAYIDP
Sbjct: 6   SGSGQPQFISSTG-NRSFSNAPLIENSDTNQIVVPDRKSWKNLFAYMGPGFLVSIAYIDP 64

Query: 64  GNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123
           GNFETDLQSGAQYKYELLWIIL+ASCAAL+IQS+AANLGVVTGKHLAEHCR EYP+VPNF
Sbjct: 65  GNFETDLQSGAQYKYELLWIILLASCAALVIQSMAANLGVVTGKHLAEHCRAEYPRVPNF 124

Query: 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF 183
           ILW++AEIAIVACDIPEVIGTAFALNMLF IPVWIGVLLTG STL+LLALQQYGVRKLEF
Sbjct: 125 ILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEF 184

Query: 184 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFL 243
           LIAFLVFT+A CF  ELGYAKP+AKEVL GLF P+LKG+GATGLAISLLGAMVMPHNLFL
Sbjct: 185 LIAFLVFTIAACFMVELGYAKPDAKEVLKGLFEPELKGSGATGLAISLLGAMVMPHNLFL 244

Query: 244 HSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNIN 303
           HSALVLSRKIPRSV+ I+    EACRFYMIES FAL VAFLINV VISVSGAVC+SSN+N
Sbjct: 245 HSALVLSRKIPRSVQGIR----EACRFYMIESAFALMVAFLINVCVISVSGAVCNSSNLN 300

Query: 304 PEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDL 363
            EDQ SC+DLDLNKASFLLRNVLG WSSKLF IAL ASGQSSTITGTYAGQYVMQGFLDL
Sbjct: 301 AEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALFASGQSSTITGTYAGQYVMQGFLDL 360

Query: 364 RLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSK 423
           RL+PW+RN LTRCLAIVPSLIVA+IGGSAGAG+LII+ASMILSFELPFALVPLLKFTSSK
Sbjct: 361 RLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIVASMILSFELPFALVPLLKFTSSK 420

Query: 424 VKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAM 483
            KMG H NS  I+A+TWIIG+L+M IN+YYL T FIK L H +LK+   VFLGI GFS M
Sbjct: 421 TKMGTHVNSTMISAVTWIIGTLLMAINIYYLITGFIKLLLHSHLKIAAKVFLGILGFSGM 480

Query: 484 AVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGT 543
           A+YLAG+ YLVLRKNKEA+HLLALT  ENQ  TNE GN S+YSLPREDI SMQLP RS  
Sbjct: 481 AMYLAGITYLVLRKNKEATHLLALTATENQQMTNEQGNGSIYSLPREDIVSMQLPQRSTP 540

Query: 544 VDID 547
            D+D
Sbjct: 541 ADVD 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115800|ref|XP_002332060.1| nramp transporter [Populus trichocarpa] gi|222831946|gb|EEE70423.1| nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523294|ref|XP_003530275.1| PREDICTED: metal transporter Nramp1-like [Glycine max] Back     alignment and taxonomy information
>gi|356557217|ref|XP_003546914.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|255572735|ref|XP_002527300.1| metal transporter, putative [Ricinus communis] gi|223533300|gb|EEF35052.1| metal transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356526260|ref|XP_003531736.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|225465528|ref|XP_002273263.1| PREDICTED: metal transporter Nramp6 [Vitis vinifera] gi|297745101|emb|CBI38940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82581291|dbj|BAE48710.1| NRAMP family metal transporter [Chengiopanax sciadophylloides] Back     alignment and taxonomy information
>gi|15220858|ref|NP_178198.1| metal transporter Nramp1 [Arabidopsis thaliana] gi|29839673|sp|Q9SAH8.1|NRAM1_ARATH RecName: Full=Metal transporter Nramp1; Short=AtNramp1 gi|6503294|gb|AAF14670.1|AC011713_18 Identical to gb|AF181687 metal ion transporter from Arabidopsis thaliana. ESTs gb|Z30530, gb|AA585940, gb|AI998720 and gb|Z33946 come from this gene [Arabidopsis thaliana] gi|7108911|gb|AAF36535.1|AF165125_1 NRAMP1 protein [Arabidopsis thaliana] gi|117168063|gb|ABK32114.1| At1g80830 [Arabidopsis thaliana] gi|332198334|gb|AEE36455.1| metal transporter Nramp1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147866830|emb|CAN78852.1| hypothetical protein VITISV_034005 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
TAIR|locus:2025677532 NRAMP1 "natural resistance-ass 0.972 1.0 0.775 1.8e-222
TAIR|locus:2200437527 NRAMP6 "NRAMP metal ion transp 0.946 0.982 0.790 4.7e-222
UNIPROTKB|Q0D7E4518 NRAMP1 "Metal transporter Nram 0.828 0.874 0.612 2e-152
UNIPROTKB|Q6ZG85545 NRAT1 "Metal transporter NRAT1 0.837 0.840 0.549 5.6e-139
DICTYBASE|DDB_G0275815629 nramp2 "putative manganese tra 0.926 0.806 0.389 7.3e-91
TAIR|locus:2045344509 NRAMP3 "natural resistance-ass 0.819 0.880 0.406 5e-87
TAIR|locus:2158242512 NRAMP4 "natural resistance ass 0.864 0.923 0.41 1.3e-86
DICTYBASE|DDB_G0276973533 nramp1 "solute carrier family 0.817 0.838 0.413 1.6e-86
WB|WBGene00004878560 smf-3 [Caenorhabditis elegans 0.460 0.45 0.488 5.7e-86
FB|FBgn0011672596 Mvl "Malvolio" [Drosophila mel 0.531 0.488 0.446 3.1e-85
TAIR|locus:2025677 NRAMP1 "natural resistance-associated macrophage protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2148 (761.2 bits), Expect = 1.8e-222, P = 1.8e-222
 Identities = 424/547 (77%), Positives = 477/547 (87%)

Query:     1 MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAY 60
             MA + +G+ QFI+S+GGNRSFSN+PLI+N D++QI+V +K SWKN FAY+GPGFLVSIAY
Sbjct:     1 MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query:    61 IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120
             IDPGNFETDLQ+GA YKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAE CR EY KV
Sbjct:    61 IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query:   121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRK 180
             PNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRK
Sbjct:   121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRK 180

Query:   181 LEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240
             LEFLIAFLVFT+A CFF EL Y+KP+  EVLHGLFVPQLKGNGATGLAISLLGAMVMPHN
Sbjct:   181 LEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240

Query:   241 LFLHSALVLSRKIPRSVRSIKSICKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSS 300
             LFLHSALVLSRKIPRS   IK    EACRFY+IESG AL VAFLINVSVISVSGAVC++ 
Sbjct:   241 LFLHSALVLSRKIPRSASGIK----EACRFYLIESGLALMVAFLINVSVISVSGAVCNAP 296

Query:   301 NINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 360
             N++PED+A+C+DLDLNKASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGF
Sbjct:   297 NLSPEDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGF 356

Query:   361 LDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFT 420
             LDLRL+PWLRN LTRCLAI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFT
Sbjct:   357 LDLRLEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFT 416

Query:   421 SSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGF 480
             S K KMG H N +AITA+TW+IG LIM IN+YYL +SFIK L H ++KL+ VVF GI GF
Sbjct:   417 SCKTKMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGF 476

Query:   481 SAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSR 540
             + +A+YLA +AYLV RKN+ A+ LL          + +S N    +LPR+DI +MQLP R
Sbjct:   477 AGIALYLAAIAYLVFRKNRVATSLLI---------SRDSQNVE--TLPRQDIVNMQLPCR 525

Query:   541 SGTVDID 547
               T D+D
Sbjct:   526 VSTSDVD 532
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0005381 "iron ion transmembrane transporter activity" evidence=IGI
GO:0034755 "iron ion transmembrane transport" evidence=IGI
GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP;IDA;TAS
GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA
GO:0070574 "cadmium ion transmembrane transport" evidence=IDA
GO:0071421 "manganese ion transmembrane transport" evidence=IDA
GO:0006828 "manganese ion transport" evidence=RCA;TAS
GO:0006875 "cellular metal ion homeostasis" evidence=NAS
GO:0015691 "cadmium ion transport" evidence=RCA;TAS
GO:0015692 "lead ion transport" evidence=TAS
GO:0030001 "metal ion transport" evidence=TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0055071 "manganese ion homeostasis" evidence=IMP
GO:0000041 "transition metal ion transport" evidence=RCA
TAIR|locus:2200437 NRAMP6 "NRAMP metal ion transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0D7E4 NRAMP1 "Metal transporter Nramp1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZG85 NRAT1 "Metal transporter NRAT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275815 nramp2 "putative manganese transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00004878 smf-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0011672 Mvl "Malvolio" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S9N8NRAM6_ARATHNo assigned EC number0.79090.94690.9829nono
O77741NRAM1_PIGNo assigned EC number0.40490.83720.8513yesno
Q9SAH8NRAM1_ARATHNo assigned EC number0.77330.97251.0yesno
Q653V6NRAM3_ORYSJNo assigned EC number0.73120.98350.9781yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 1e-157
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-129
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 1e-125
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 1e-104
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information 
 Score =  454 bits (1171), Expect = e-157
 Identities = 188/429 (43%), Positives = 272/429 (63%), Gaps = 16/429 (3%)

Query: 34  QIVVPDKTS-WKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL 92
            + V    S WK L A++GP FLV++ Y+DPGN+ T++Q G+Q+ Y LLW+IL+++  A+
Sbjct: 20  SVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAM 79

Query: 93  IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF 152
           ++QSL+A LG+ TG+ LA+ CR+ YP+   + LW+ AE+AI+A D+ EVIG A AL +LF
Sbjct: 80  LLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139

Query: 153 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLH 212
            IP+  G L+T   T ++L LQ+ G R LE +I  L+  +A  F  EL  A+P+   VL 
Sbjct: 140 GIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLK 199

Query: 213 GLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKSICKEACR 269
           G F+P    L    A  LA  +LGA VMPHNL+LHS+LV +R + R+        +EA R
Sbjct: 200 G-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEK----REALR 254

Query: 270 FYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSW 329
           F  I+S  AL +A  +N +++ ++ A   +S             D+  A  LL  +LG+ 
Sbjct: 255 FTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVA-------DIEDAYLLLSPLLGAA 307

Query: 330 SSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIG 389
           ++ LF IALLASG SST+ GT AGQ VM+GFL LR+  W+R  +TR LA+VP+LIV L+G
Sbjct: 308 AATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLG 367

Query: 390 GSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMII 449
           G     +L++++ ++LSF LPFAL+PLL FTS +  MG   N   +  I WII  LI+ +
Sbjct: 368 GELDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVAL 427

Query: 450 NVYYLATSF 458
           N+Y L  +F
Sbjct: 428 NIYLLYQTF 436

Length = 439
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
PRK00701439 manganese transport protein MntH; Reviewed 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.79
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.71
TIGR00813407 sss transporter, SSS family. have different number 98.69
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.68
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.67
PRK15419502 proline:sodium symporter PutP; Provisional 98.54
PRK12488549 acetate permease; Provisional 98.54
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.49
PRK09395551 actP acetate permease; Provisional 98.48
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.47
PRK15132403 tyrosine transporter TyrP; Provisional 98.44
COG1457442 CodB Purine-cytosine permease and related proteins 98.36
PRK11375484 allantoin permease; Provisional 98.34
PRK11387471 S-methylmethionine transporter; Provisional 98.3
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.2
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.13
PRK13629443 threonine/serine transporter TdcC; Provisional 98.12
PRK09664415 tryptophan permease TnaB; Provisional 98.11
PRK15049499 L-asparagine permease; Provisional 98.1
PRK10483414 tryptophan permease; Provisional 98.09
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.03
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.01
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.01
PRK11017404 codB cytosine permease; Provisional 97.99
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.97
TIGR00814397 stp serine transporter. The HAAAP family includes 97.96
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 97.94
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.9
COG3949349 Uncharacterized membrane protein [Function unknown 97.88
PRK10484523 putative transporter; Provisional 97.84
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.78
PRK10249458 phenylalanine transporter; Provisional 97.76
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.65
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.61
TIGR00913478 2A0310 amino acid permease (yeast). 97.51
PRK10238456 aromatic amino acid transporter; Provisional 97.48
PRK11357445 frlA putative fructoselysine transporter; Provisio 97.46
PRK11021410 putative transporter; Provisional 97.34
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.33
PRK10644445 arginine:agmatin antiporter; Provisional 97.31
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 97.28
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.24
TIGR00908442 2A0305 ethanolamine permease. The three genes used 97.23
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.15
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.13
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.12
COG0814415 SdaC Amino acid permeases [Amino acid transport an 97.1
TIGR00909429 2A0306 amino acid transporter. 96.85
PRK10836489 lysine transporter; Provisional 96.83
TIGR00930 953 2a30 K-Cl cotransporter. 96.78
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.68
PRK10580457 proY putative proline-specific permease; Provision 96.67
TIGR00911501 2A0308 L-type amino acid transporter. 96.63
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 96.49
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 96.42
PRK10197446 gamma-aminobutyrate transporter; Provisional 96.4
COG4147529 DhlC Predicted symporter [General function predict 96.31
PRK10746461 putative transport protein YifK; Provisional 96.27
PRK15433439 branched-chain amino acid transport system 2 carri 96.01
PRK10655438 potE putrescine transporter; Provisional 95.5
KOG1289550 consensus Amino acid transporters [Amino acid tran 95.28
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 95.19
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 94.77
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 94.44
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 94.02
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 93.89
COG1966575 CstA Carbon starvation protein, predicted membrane 93.73
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 93.67
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 93.61
TIGR00906557 2A0303 cationic amino acid transport permease. 92.67
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 92.67
TIGR00912359 2A0309 spore germination protein (amino acid perme 92.26
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 90.91
COG0833541 LysP Amino acid transporters [Amino acid transport 87.62
PRK15238496 inner membrane transporter YjeM; Provisional 85.88
KOG1286554 consensus Amino acid transporters [Amino acid tran 84.64
COG0531466 PotE Amino acid transporters [Amino acid transport 82.55
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-114  Score=902.89  Aligned_cols=470  Identities=50%  Similarity=0.789  Sum_probs=424.4

Q ss_pred             ccccCCCCcccc-cCCcchHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008955           25 PLIKNEDADQIV-VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGV  103 (547)
Q Consensus        25 ~~~~~~~~~~~~-~~~~~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgv  103 (547)
                      +..|+.++.+++ .+++++|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGv   85 (503)
T KOG1291|consen    6 LLVEDQEGIDIPVKPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGV   85 (503)
T ss_pred             hhcccccccCCCCCccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            334433333333 3568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 008955          104 VTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF  183 (547)
Q Consensus       104 vTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~r~lE~  183 (547)
                      ||||||+|.||++||||+++.+|+++|+|++++|+|||+|+|+|+|+|+++|+|+||+||++||++++++.|||.||+|.
T Consensus        86 VTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~  165 (503)
T KOG1291|consen   86 VTGKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEA  165 (503)
T ss_pred             cccHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHhhccccccccCCC--ChHHHHHHHhcccchhHHHHHHHHHHhhhcCCCcchhhh
Q 008955          184 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGN--GATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIK  261 (547)
Q Consensus       184 ~~~~Lv~vm~l~F~~~~~~~~Pd~~~v~~G~~iP~~~~~--~~l~~avaiiGatimP~nlflhS~lv~~R~~~~~~~~~~  261 (547)
                      ++.+|+..|++||.+|+..++|+.+|++.|.|+|+++++  +.+.+++|++||+|||||+|+||++||+|+.|++.|.  
T Consensus       166 ~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~--  243 (503)
T KOG1291|consen  166 FFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKK--  243 (503)
T ss_pred             HHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhh--
Confidence            999999999999999999999999999999999999963  4689999999999999999999999999999876542  


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCC-CC-----CCcccccccchHHHHHHHHHhhhHHHHHHH
Q 008955          262 SICKEACRFYMIESGFALAVAFLINVSVISVS-GAVCSSSNI-NP-----EDQASCKDLDLNKASFLLRNVLGSWSSKLF  334 (547)
Q Consensus       262 ~~~~~~~~~~~id~~~~l~vs~lIn~~vviv~-A~vl~~~g~-~~-----~~~~~~~~~~l~~a~~~L~~~lG~~a~~iF  334 (547)
                       +++|+++|..+|+.+++.++|.||.+++.++ |..+++... ..     .+.+++.+.|+.+++.+|++.+|+++.++|
T Consensus       244 -~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~If  322 (503)
T KOG1291|consen  244 -GVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIF  322 (503)
T ss_pred             -hhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHH
Confidence             2489999999999999999999999999998 766664321 11     122344577899999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhHhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhHHHHHHH
Q 008955          335 AIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALV  414 (547)
Q Consensus       335 aigLlaAg~sStit~t~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpallv~~~~g~~~~~~Ll~~aqvi~s~~LPfali  414 (547)
                      ++|+++||||||+||||+||++||||+|++++||.||++||++||+|++++++..|..+..++++++||++|++|||+++
T Consensus       323 ai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~i  402 (503)
T KOG1291|consen  323 AIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVI  402 (503)
T ss_pred             HHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHHhcCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008955          415 PLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLV  494 (547)
Q Consensus       415 pll~~~n~k~iMG~~~n~~~~~il~~~~~~~i~~lni~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~  494 (547)
                      |++.|+|+|++||+|+|+...+..+|....+++.+|.|++++ +...+.+++..      +...+....+.|+++++||+
T Consensus       403 PLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~~~------~~~~~~~~~~~y~~~i~yL~  475 (503)
T KOG1291|consen  403 PLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVS-FFWSLVGKHSK------IVVTVNVWTLAYLAFILYLA  475 (503)
T ss_pred             hHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeee-ehhhhcCCcee------eehhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999995 44445543322      22234456688999999999


Q ss_pred             hccccccccc
Q 008955          495 LRKNKEASHL  504 (547)
Q Consensus       495 ~~~~~~~~~~  504 (547)
                      .++.......
T Consensus       476 ~~~l~~~~~~  485 (503)
T KOG1291|consen  476 ATCLNAYSII  485 (503)
T ss_pred             HHHHHHHhhh
Confidence            9986655433

>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 87/597 (14%), Positives = 173/597 (28%), Gaps = 195/597 (32%)

Query: 25  PLIKNEDADQIV-VPDKTS------W------KNLFA-YIGP------GFLVS-IA--YI 61
            ++  E+ D I+   D  S      W      + +   ++         FL+S I     
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 62  DPG-----------NFETDLQSGAQY---KYELLWIILVASCAALIIQSLAANLGVV--- 104
            P                D Q  A+Y   + +    +  A      +  L     V+   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAKNVLIDG 157

Query: 105 ---TGKH-LA-EHCRNE--YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNML------ 151
              +GK  +A + C +     K+   I W    + +  C+ PE +     L ML      
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETV-----LEMLQKLLYQ 208

Query: 152 ------------FKIPVWIGVLLTGFSTLILLALQQY--------GVRKLEFLIAF---- 187
                         I + I  +        LL  + Y         V+  +   AF    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 188 --LVFTMAGCFFAEL---------------GYAKPEAKEVLHGLFV-------PQ--LKG 221
             L+ T        L                    E K +L   ++       P+  L  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT 325

Query: 222 NGATGLAISLLGAMVMPH----NLFLHSAL-VLSRKIPRSVRSIKSICKEACRFYMIESG 276
           N      +S++   +       + + H     L+  I  S+  ++    E  + +     
Sbjct: 326 N---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFD---- 376

Query: 277 FALAVAFLINVSV-ISVSGAV-CSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLF 334
             L+V F  +  +   +   +       +     +     L+K S + +    S  S + 
Sbjct: 377 -RLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTIS-IP 429

Query: 335 AIALLASGQSSTITGTYA---GQYVMQGFLDL--RLKPWLRNFLTRCLAIVPSLIVALIG 389
           +I L    +       +      Y +    D    + P+L  +             + IG
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHIG 478

Query: 390 ---GSAGAGQLIIIASMI-LSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSL 445
               +    + + +  M+ L F          +F   K++     +S A  A   I+ + 
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF----------RFLEQKIR----HDSTAWNASGSIL-NT 523

Query: 446 IMIINVY--Y----------LATSFIKFLFHGNLKLVEVVFLGIFGFSAM----AVY 486
           +  +  Y  Y          L  + + FL      L+   +  +   + M    A++
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.13
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.54
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.28
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.27
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.23
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.14
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 91.09
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=99.13  E-value=6.2e-07  Score=97.65  Aligned_cols=158  Identities=11%  Similarity=0.045  Sum_probs=93.1

Q ss_pred             CccccCCCCcccccCCc-chHHHHHHhhhHHHHHHHhhcCCchHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 008955           24 APLIKNEDADQIVVPDK-TSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAA   99 (547)
Q Consensus        24 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lGPG~Lva~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laa   99 (547)
                      ++.+|+.|-++++..++ .++.++      ..+...+-+..+++.......+  |   ++-++.+++++++..++-.+.+
T Consensus         9 ~~~~e~~~i~pvp~~~R~~~~~~~------~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~   80 (501)
T 2jln_A            9 ARSLLNPSNAPTRYAERSVGPFSL------AAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQ   80 (501)
T ss_dssp             CCBCCCSTTSCCCGGGCCBCHHHH------HHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccccCCCCCCChhhCCCCHHHH------HHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566665555544332 233333      2333444555556554433332  3   3445677778888888888999


Q ss_pred             hhhhhcCCCHHHHHHhhCCCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----cCCc-hHHHHHHHHHHHHHHHHHH
Q 008955          100 NLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNML----FKIP-VWIGVLLTGFSTLILLALQ  174 (547)
Q Consensus       100 RlgvvTG~~Lae~~r~~y~~~~~~~lwi~~~la~i~~di~eviG~Aial~lL----fgip-l~~gvlit~~~~~~lL~l~  174 (547)
                      +.|..+|.+-.+..|..||++.+.+.-++..+..++-..-+....+.+++.+    +|++ .+++.++..+.++.+.+.+
T Consensus        81 ~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G  160 (501)
T 2jln_A           81 SAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG  160 (501)
T ss_dssp             HHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999887765444333333333333444444455444    3876 6788877766555554443


Q ss_pred             hhhhHHHHHHHHHHH
Q 008955          175 QYGVRKLEFLIAFLV  189 (547)
Q Consensus       175 ~yg~r~lE~~~~~Lv  189 (547)
                      -...+++|++...++
T Consensus       161 ~~~i~~~~~~~~p~~  175 (501)
T 2jln_A          161 ITFIRWMNVFASPVL  175 (501)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333455555544333
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 93.78
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.78  E-value=4  Score=41.21  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             hcCCchHHH-----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHh
Q 008955           60 YIDPGNFET-----DLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRN  115 (547)
Q Consensus        60 ~idpGni~t-----~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG~~Lae~~r~  115 (547)
                      .+|.||+=-     .-..|..|=.--+-.+++-.+..+.+|...+|++-....+-...+..
T Consensus        18 avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~   78 (509)
T d2a65a1          18 AVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFY   78 (509)
T ss_dssp             HSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHH
T ss_pred             HhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            588888752     33334444333333444445566677777777765555454444433