Citrus Sinensis ID: 008992

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------

MSKLKKQLSYISVPSQIINSLSSSSLQSLLVSPKKPSKSSFSRNSYKNPRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFTTSPRDSFASNEQQNGQKDEILKGFNESQALVSKGFEDSEESEFWKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKAGRDVTKYPVPECMCNDSHAHSS

cccccccccEEEcccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccEEccccccccccccccccccccccHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHccccEEccccccccccccccccccHHHHHHEEEEccccEEEccccccHHHHHHHHHHHHccccEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc

ccccccEEEEEEcccccEcccccHHHHHHHcccccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccHHHHccHHHHHHHHHHHcEHHHcccHHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEccccccccHHHHHHHHHHHHcccccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHHEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc

msklkkqlsyisVPSQIINSLSSSSLQsllvspkkpskssfsrnsyknprfWFLTLFLVGLFGMlklgfnldppipfspypcfttsprdsfasneqqngqkDEILKGFNESQALVskgfedseesefwkqpdgmgyrpclhfsreyRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILqvnviwgdesefsdifdleHFKSVLANDvrivsslpsthimtrpveekrtplhvspqWIRARYLRRLNREGVLLLRGLdsrlskdlpsdLQKLRCKVAFHalrfappilQLGNKLAERmrskgpylslhLRMEKDVwvrtgclpgpeydemISNERKQRPELLTARSNMTYHERklaglcplnAVEVTRLLKALGAPKIARIYwaggeplggkeallplitefphlynkedlalpgelepfanKASLMAAIDYIVsensdifmpshggnmghAIQGHRAYAghmkyitpnKRQMLHYFlnsslpeaEFNRIIKELHseslgqpelrtskagrdvtkypvpecmcndshahss

MSKLKKQLSYISVPSQIINSLSSSSLQSLLVspkkpskssfsrnsyknpRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFTTSPRDSFASNEQQNGQKDEILKGFNESQALVSkgfedseesefwkqpdgmgyrpCLHFSREYRKYSNAIVKDRRKYLLVVVsggmnqqrnQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVsslpsthimtrpveekrtplhvspqwiRARYLRRLNREGVLLLrgldsrlskdlpSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLslhlrmekdvwVRTGCLpgpeydemisnerkQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELhseslgqpelrtskagrdvtkypvpecmcndshahss

MSKLKKQLSYIsvpsqiinslsssslqsllvspkkpskssfsrnsYKNPRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFTTSPRDSFASNEQQNGQKDEILKGFNESQALVSKGFEDSEESEFWKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKAGRDVTKYPVPECMCNDSHAHSS

***********************************************NPRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFT*******************************************WKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEY*******************NMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIK***************************************

************VPSQIIN**************************YKNPRFWFLTLFLVGLFGMLKLGFNLDPPIPF******************************************************DGMGYRPCLH****************RKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPST*************LHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLP*P**DEMISNERKQRPELLTARSN*************LNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIK********************VTKYPVPE****D******

********SYISVPSQIINSLSSSS******************NSYKNPRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFTTSPRDSFASNEQQNGQKDEILKGFNESQALV*************KQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKAGRDVTKYPVPECMCNDSHAHSS

****KKQLSYISVPSQIINSLSSSSLQSLLVSPKKPSKSSFSRNSYKNPRFWFLTLFLVGLFGMLKLGFNLDPPIPFSPYPCFTTSPRDS*********************************ESEFWKQPDGMGYRPCLHFSRE****SNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELHSESLGQPELRTSKAGRDVTKYPVPECMCND******

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		547	2.2.26 [Sep-21-2011]
Q8W486		519	Uncharacterized protein A	no	no	0.751	0.791	0.325	4e-57

>sp\|Q8W486\|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1	Back alignment and function desciption

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 217/433 (50%), Gaps = 22/433 (5%)

Query: 126 EFWKQPDGMGYRPCLHFSREYRKYSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARI 185
           E W+     G+RP    S   R       K+   YL V  +GG+NQQR+ I +AV+ ARI
Sbjct: 61  ELWESAKSGGWRP----SSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116

Query: 186 LGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEK-- 243
           + A LV+P L  N  W D+S F  I+D+EHF   L  DV+IV  +P  H   +  + K  
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAF 176

Query: 244 --RTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLSKDLPS-DLQKLRCKVAFHALRFA 300
             R P     +W     L+ +     + L     RL++++ + + Q+LRC+V +HALRF 
Sbjct: 177 QIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFK 236

Query: 301 PPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLP--GPEYDEMISNERKQRPELL 358
           P I++L   + +++RS+G ++S+HLR E D+    GC     PE  +++   RK+     
Sbjct: 237 PHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKEN---- 292

Query: 359 TARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEF 418
            A   + Y+ER+  G CPL   EV  +L+A+      RIY A GE  GG++ + P  T F
Sbjct: 293 FADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLF 352

Query: 419 PHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGG--NMGHAIQGHRAYA 476
           P L N   +  P E     ++  + +A+DY+V   SDIFMP++ G  N  + + GHR Y 
Sbjct: 353 PRLDNHSSVD-PSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYY 411

Query: 477 GHMKYITPNKRQMLHYFL-NSSLPEAEFNRIIKELH-SESLGQPELRTSKAGRDVTKYPV 534
           G    I P+++ +   F+       A F   ++ +    + G P  R S        +  
Sbjct: 412 GFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSW-- 469

Query: 535 PECMCNDSHAHSS 547
           PEC C  +   SS
Sbjct: 470 PECFCQMNPKKSS 482

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
255559237		589	conserved hypothetical protein [Ricinus	0.990	0.920	0.763	0.0
224104545		570	predicted protein [Populus trichocarpa]	0.981	0.942	0.789	0.0
225450232		536	PREDICTED: DUF246 domain-containing prot	0.946	0.966	0.772	0.0
449501615		572	PREDICTED: DUF246 domain-containing prot	0.989	0.945	0.742	0.0
15224887		573	axi 1 protein-like protein [Arabidopsis	0.974	0.930	0.760	0.0
297824475		576	hypothetical protein ARALYDRAFT_483577 [	0.970	0.921	0.754	0.0
224121002		435	predicted protein [Populus trichocarpa]	0.791	0.995	0.874	0.0
356532281		552	PREDICTED: DUF246 domain-containing prot	0.978	0.969	0.744	0.0
356542399		555	PREDICTED: DUF246 domain-containing prot	0.983	0.969	0.742	0.0
357457469		600	Growth regulator like protein [Medicago	0.972	0.886	0.698	0.0

>gi\|255559237\|ref\|XP_002520639.1\| conserved hypothetical protein [Ricinus communis] gi\|223540159\|gb\|EEF41735.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/580 (76%), Positives = 490/580 (84%), Gaps = 38/580 (6%)

Query: 6   KQLSYISVPSQIINSLSSSSLQSLLVSPKKPSKSSFSRNS-YKNPRFWFLTLFLVGLFGM 64
           K++SYISVPSQ+INSLSSSSLQ+LL+SPKKPS++ F   S +K+P+ WF  LF+ G  GM
Sbjct: 9   KKVSYISVPSQVINSLSSSSLQTLLLSPKKPSRNKFLNWSLFKSPKVWFFALFIFGFLGM 68

Query: 65  LKLGFNLDPPIPFSPYPCFTTSPRD-SF-----------ASNEQQNGQKDE-----ILKG 107
           L+L F+LDP +P   YPC T+  +D SF           ASN   N  KD+      +KG
Sbjct: 69  LRLWFDLDPLVPLYSYPCVTSQTQDNSFSNGYSGSKLASASNVDINSLKDQKDGFATIKG 128

Query: 108 FN----------------ESQALVSKGFEDSE--ESEFWKQPDGMGYRPCLHFSREYRKY 149
            N                +S++L+S  +E SE  ESEFWKQPDG+GY+PCL FS+EYR+ 
Sbjct: 129 SNSVVGLALINERLGDNEKSKSLISNRYETSEGEESEFWKQPDGLGYKPCLDFSKEYRRG 188

Query: 150 SNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSD 209
           S  +VKDRRKYL+VVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSD
Sbjct: 189 SELVVKDRRKYLIVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSD 248

Query: 210 IFDLEHFKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLL 269
           IFDLE+FK VLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYL+RLNREGVLL
Sbjct: 249 IFDLEYFKRVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLKRLNREGVLL 308

Query: 270 LRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEK 329
           LRGLDSRLSKDLPSDLQKLRCKVAFHAL FAP IL+LGNKLAERMRSKGPYL+LHLRMEK
Sbjct: 309 LRGLDSRLSKDLPSDLQKLRCKVAFHALIFAPSILELGNKLAERMRSKGPYLALHLRMEK 368

Query: 330 DVWVRTGCLPG--PEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLK 387
           DVWVRTGCLPG  P+YDE+IS+ERK+RPELLT RSNMTYHE+KLAGLCPLNA+EVTRLLK
Sbjct: 369 DVWVRTGCLPGLSPKYDEIISDERKRRPELLTGRSNMTYHEKKLAGLCPLNALEVTRLLK 428

Query: 388 ALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAID 447
           ALGAP  ARIYWAGG+PLGGKEALLP+  EFPH YNKEDLAL GELEPF NKAS+MAAID
Sbjct: 429 ALGAPSDARIYWAGGQPLGGKEALLPITNEFPHFYNKEDLALHGELEPFVNKASVMAAID 488

Query: 448 YIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRII 507
           YIVSE SD+FM SHGGNMGHAIQGHRAYAGH KYITPNKR ML YFLNSSLPEAEFN II
Sbjct: 489 YIVSEKSDVFMASHGGNMGHAIQGHRAYAGHKKYITPNKRHMLPYFLNSSLPEAEFNVII 548

Query: 508 KELHSESLGQPELRTSKAGRDVTKYPVPECMCNDSHAHSS 547
           K+LH +SLGQPELRTSK GRDVTK+P+PECMCNDSH HSS
Sbjct: 549 KDLHRDSLGQPELRTSKDGRDVTKFPIPECMCNDSHTHSS 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224104545\|ref\|XP_002313473.1\| predicted protein [Populus trichocarpa] gi\|222849881\|gb\|EEE87428.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225450232\|ref\|XP_002266606.1\| PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera] gi\|297736200\|emb\|CBI24838.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449501615\|ref\|XP_004161417.1\| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|15224887\|ref\|NP_181978.1\| axi 1 protein-like protein [Arabidopsis thaliana] gi\|13877693\|gb\|AAK43924.1\|AF370605_1 axi 1 protein-like protein [Arabidopsis thaliana] gi\|3128192\|gb\|AAC16096.1\| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gi\|330255336\|gb\|AEC10430.1\| axi 1 protein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297824475\|ref\|XP_002880120.1\| hypothetical protein ARALYDRAFT_483577 [Arabidopsis lyrata subsp. lyrata] gi\|297325959\|gb\|EFH56379.1\| hypothetical protein ARALYDRAFT_483577 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224121002\|ref\|XP_002330879.1\| predicted protein [Populus trichocarpa] gi\|222872701\|gb\|EEF09832.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356532281\|ref\|XP_003534702.1\| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max]	Back alignment and taxonomy information

>gi\|356542399\|ref\|XP_003539654.1\| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max]	Back alignment and taxonomy information

>gi\|357457469\|ref\|XP_003599015.1\| Growth regulator like protein [Medicago truncatula] gi\|355488063\|gb\|AES69266.1\| Growth regulator like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
TAIR\|locus:2050564		573	AT2G44500 [Arabidopsis thalian	0.906	0.865	0.757	1.5e-207
TAIR\|locus:2077482		579	AT3G07900 [Arabidopsis thalian	0.809	0.765	0.724	3.1e-179
TAIR\|locus:2167311		559	AT5G63390 [Arabidopsis thalian	0.890	0.871	0.569	1.4e-144
TAIR\|locus:2014619		572	AT1G76270 [Arabidopsis thalian	0.782	0.748	0.364	4.4e-68
TAIR\|locus:2174754		522	AT5G64600 [Arabidopsis thalian	0.744	0.779	0.363	1.6e-65
TAIR\|locus:2157096		652	AT5G35570 [Arabidopsis thalian	0.747	0.627	0.368	3.3e-63
TAIR\|locus:2130938		549	AT4G16650 [Arabidopsis thalian	0.765	0.763	0.382	4.2e-63
TAIR\|locus:2121909		519	AT4G24530 [Arabidopsis thalian	0.365	0.385	0.381	5.5e-63
TAIR\|locus:2009467		565	AT1G22460 [Arabidopsis thalian	0.771	0.746	0.345	7.9e-62
TAIR\|locus:2168297		504	AT5G65470 [Arabidopsis thalian	0.404	0.438	0.357	1.5e-61

TAIR\|locus:2050564 AT2G44500 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2007 (711.6 bits), Expect = 1.5e-207, P = 1.5e-207
 Identities = 385/508 (75%), Positives = 434/508 (85%)

Query:    46 YKNPRFWFLTLFLVGLFGMLKLGFNLDP-PIPFSPYPCFTTSPRDSFASNEQQNGQ---- 100
             Y+NPR WF TLFLV LFGMLKLGFN+DP  +PFS YPC TT    SF   +         
Sbjct:    56 YRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSFDGEQNAASHLGLA 115

Query:   101 KDEILK-GFNESQALVSKGFEDSE----ESEFWKQPDGMGYRPCLHFSREYRKYSNAIVK 155
             ++ IL  G + S A++      +E    E +FWKQPDG+G++PCL F+ +YRK SN+I+K
Sbjct:   116 QEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCLGFTSQYRKDSNSILK 175

Query:   156 DRRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEH 215
             +R KYLLVVVSGGMNQQRNQIVDAVVIARILGA+LVVP+LQVNVIWGDESEF+DIFDLEH
Sbjct:   176 NRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVNVIWGDESEFADIFDLEH 235

Query:   216 FKSVLANDVRIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDS 275
             FK VLA+DV IVSSLPSTH+MTRPVEEKRTPLH SPQWIRA YL+R+NRE VLLLRGLDS
Sbjct:   236 FKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRAHYLKRINRERVLLLRGLDS 295

Query:   276 RLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRT 335
             RLSKDLPSDLQKLRCKVAF ALRF+P IL+LGNKLA RMR++G YLSLHLRMEKDVWVRT
Sbjct:   296 RLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRMRNQGQYLSLHLRMEKDVWVRT 355

Query:   336 GCLPG--PEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPK 393
             GCLPG  PEYDE++++ER++ PELLT RSNMTYHERKLAGLCPL A+EVTRLLKAL APK
Sbjct:   356 GCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERKLAGLCPLTALEVTRLLKALEAPK 415

Query:   394 IARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSEN 453
              ARIYWAGGEPLGGKE L PL  EFP  YNK DLALPGELEPFANKAS+MAAIDYIV E 
Sbjct:   416 DARIYWAGGEPLGGKEVLEPLTKEFPQFYNKHDLALPGELEPFANKASVMAAIDYIVCEK 475

Query:   454 SDIFMPSHGGNMGHAIQGHRAYAGHMKYITPNKRQMLHYFLNSSLPEAEFNRIIKELHSE 513
             SD+F+PSHGGNMGHA+QG RAYAGH KYITPNKRQML YF+NSSLPE++FNRI+K+LH E
Sbjct:   476 SDVFIPSHGGNMGHALQGQRAYAGHKKYITPNKRQMLPYFMNSSLPESDFNRIVKDLHRE 535

Query:   514 SLGQPELRTSKAGRDVTKYPVPECMCND 541
             SLGQPELR SKAG+DVTK+PVPECMC+D
Sbjct:   536 SLGQPELRMSKAGKDVTKHPVPECMCSD 563

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR\|locus:2077482 AT3G07900 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2167311 AT5G63390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		547
cd11299		290	cd11299, O-FucT_plant, GDP-fucose protein O-fucosy	1e-133
pfam10250		315	pfam10250, O-FucT, GDP-fucose protein O-fucosyltra	5e-90
cd11296		206	cd11296, O-FucT_like, GDP-fucose protein O-fucosyl	1e-06
cd11296		206	cd11296, O-FucT_like, GDP-fucose protein O-fucosyl	0.002

>gnl\|CDD\|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily	Back alignment and domain information

 Score =  390 bits (1003), Expect = e-133
 Identities = 147/324 (45%), Positives = 192/324 (59%), Gaps = 38/324 (11%)

Query: 160 YLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSV 219
           YLLV  +GG+NQQR+QI DAV +AR+L A LV+P L  N +WGD S+F DI+D++HF   
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60

Query: 220 LANDVRIVSSLPSTHIMTRP-VEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLDSRLS 278
           L +DVR+V  LP      +P +  KR P   SP +     L  L + GV+ L   DSRL+
Sbjct: 61  LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120

Query: 279 KD-LPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSK-GPYLSLHLRMEKDVWVRTG 336
            D LP ++Q+LRC+V FHALRF P I +LG+KL +R+R   GP+L+LHLR EKD+   +G
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180

Query: 337 CLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIAR 396
           C                                   G CPL   EV  LL+ALG P+  R
Sbjct: 181 C-----------------------------------GKCPLTPEEVGLLLRALGFPRSTR 205

Query: 397 IYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDI 456
           IY A GE  GG+  L PL + FP+LY KE LA   EL PF+  +S +AA+DYIV   SD+
Sbjct: 206 IYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDV 265

Query: 457 FMPSHGGNMGHAIQGHRAYAGHMK 480
           F+P++GGN   A+ GHR Y GH K
Sbjct: 266 FVPTYGGNFAKAVAGHRRYLGHRK 289

Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl\|CDD\|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase	Back alignment and domain information

>gnl\|CDD\|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins	Back alignment and domain information

>gnl\|CDD\|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		547
PF10250		351	O-FucT: GDP-fucose protein O-fucosyltransferase; I	100.0
KOG3849		386	consensus GDP-fucose protein O-fucosyltransferase	97.94
PF05830		321	NodZ: Nodulation protein Z (NodZ); InterPro: IPR00	96.41

>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats	Back alignment and domain information

Probab=100.00  E-value=1.4e-55  Score=445.92  Aligned_cols=296  Identities=31%  Similarity=0.506  Sum_probs=205.2

Q ss_pred             EcCchhhHHHHHHHHHHHHHHhCCeEeccccccccccCCCCC-----CcCCCChHHHHHhccCCcEEeccCcccccccCC
Q 008992          165 VSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESE-----FSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRP  239 (547)
Q Consensus       165 ~nGGLNQqR~~IcDaVaVARiLNATLVlP~L~~~s~W~D~S~-----F~DIFD~dhFI~~L~~dVrIVk~LP~~~~~~~~  239 (547)
                      +.||+||||.++++||++|++||+|||||.+.....|++.++     |+++||+++|++.++.+|.+.+.+|........
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~   85 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR   85 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence            789999999999999999999999999999999999999988     999999999999999999999998865432111


Q ss_pred             ------------------------------cccccCCC-CCChhHHHHHHHHhhhhc------ceEEEeccCccccCC-C
Q 008992          240 ------------------------------VEEKRTPL-HVSPQWIRARYLRRLNRE------GVLLLRGLDSRLSKD-L  281 (547)
Q Consensus       240 ------------------------------~~~~~vp~-~~sp~~y~~~vlP~L~k~------~VI~l~~~d~RLa~~-l  281 (547)
                                                    ........ ...+.||.++++|.+.++      +|+.|.++..++.++ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  165 (351)
T PF10250_consen   86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL  165 (351)
T ss_dssp             EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred             hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence                                          00111221 456678777788988876      999999999999876 8


Q ss_pred             ChhhhhhhhhhcccccccChhHHHHHHHHHHHHH-hcCCeEEeeccchhhhhhhhcCCCCchhhHHHHHHHhhccccccc
Q 008992          282 PSDLQKLRCKVAFHALRFAPPILQLGNKLAERMR-SKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTA  360 (547)
Q Consensus       282 P~diQrLRCrvnf~ALrF~p~I~~Lg~~LV~RmR-~~GpyiALHLR~E~DMlAfsgC~~g~e~~e~l~~~R~~~~~~~~~  360 (547)
                      +.++||        +|+|+++|+++|+++|++|+ ..++|||+|||+|+||  +++|.++. ..+.++..|..      +
T Consensus       166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~-~~~~~~~~~~~------~  228 (351)
T PF10250_consen  166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG-ERHLLASPRCW------G  228 (351)
T ss_dssp             GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-----TTTHHHH-------
T ss_pred             CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC-chHHHHHhHhh------c
Confidence            888987        99999999999999999999 8899999999999999  88899964 45556777765      2


Q ss_pred             cCCCChHHHhhCCCCCCCHHHHHHHHHHcCCCCCcEEEEeecccCCccccccchHhhCCCceecccCCCcccccccccch
Q 008992          361 RSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKA  440 (547)
Q Consensus       361 ~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAaGeiyGg~~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~s  440 (547)
                      ++.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+|+++|.+  
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--  306 (351)
T PF10250_consen  229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--  306 (351)
T ss_dssp             GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred             cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence            345666677889999999999999999999999999999999999999999999999999999999999999999976  


Q ss_pred             hhhhHhhhhhhcCCceeeeCCCCchhhhhhhhccccCCC
Q 008992          441 SLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHM  479 (547)
Q Consensus       441 s~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~  479 (547)
                      .++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus       307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            999999999999999999999999999999999999965

Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		547
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 81/546 (14%), Positives = 143/546 (26%), Gaps = 185/546 (33%)

Query: 91  FASNEQQNGQKDEILKGFNESQALVSKGFE--DSEESEFWKQPDGMGYRPCLHFSREYRK 148
           F + E Q   KD IL  F ++       F+  D ++            +  L    E   
Sbjct: 9   FETGEHQYQYKD-ILSVFEDA---FVDNFDCKDVQDMP----------KSILS-KEEIDH 53

Query: 149 YSNAIVKDRRKYLLVVVSGGMNQQRNQIVDAVV----------IARILGAALVVP----- 193
              +         L      +  ++ ++V   V          +   +      P     
Sbjct: 54  IIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 194 --ILQVNVIWGDESEFSDIF--DLEHF-------------------------KSVLANDV 224
             I Q + ++ D   F+      L+ +                         K+ +A DV
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 225 RIVSSLPSTHIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLL--LRGLDSRLSKDLP 282
               S      M   +            W+    L+  N    +L  L+ L  ++  +  
Sbjct: 171 --CLSYKVQCKMDFKI-----------FWLN---LKNCNSPETVLEMLQKLLYQIDPNW- 213

Query: 283 SDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPY---LSLHLRMEKDVW----VRT 335
                     + H+      I  +  +L   ++SK PY   L L L    +V        
Sbjct: 214 -------TSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCL-LVLL---NVQNAKAWNA 261

Query: 336 ---GCLPGPEYDEMISNERKQRPELLTAR---------SNMTYH---ERKLAGLCPLNAV 380
               C                   LLT R         +  T H   +     L P    
Sbjct: 262 FNLSC-----------------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 381 EVTRLLKALGA-----PKIARIYWAGGEPLGGKEALLPLITE-----------FPHLYNK 424
            +  LLK L       P+          P       L +I E           + H  N 
Sbjct: 305 SL--LLKYLDCRPQDLPREVL----TTNPR-----RLSIIAESIRDGLATWDNWKH-VNC 352

Query: 425 EDLALPGE-----LEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHM 479
           + L    E     LEP   +         +   ++ I  P+        +         +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHI--PTI------LLS---LIWFDV 399

Query: 480 KYITPNKRQMLHYFLNSSLPEAEFNRIIKELHS---ESLGQPELRTSKAGRDVTKYPVPE 536
                    +++     SL E +       + S   E   + E   +     V  Y +P+
Sbjct: 400 IKSDV--MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 537 CMCNDS 542
              +D 
Sbjct: 458 TFDSDD 463

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		547
4ap5_A		408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	99.56
3zy2_A		362	Putative GDP-fucose protein O-fucosyltransferase;	99.22
2de0_X		526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	97.88
2hhc_A		330	NODZ, nodulation fucosyltransferase NODZ; glycosyl	97.77

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*	Back alignment and structure

Probab=99.56  E-value=2e-14  Score=149.45  Aligned_cols=297  Identities=16%  Similarity=0.195  Sum_probs=169.8

Q ss_pred             CCCcEEEEEE-cC-chhhHHHHHHHHHHHHHHhCCe----EeccccccccccCC------CCCCcCCCChHHHHHhccCC
Q 008992          156 DRRKYLLVVV-SG-GMNQQRNQIVDAVVIARILGAA----LVVPILQVNVIWGD------ESEFSDIFDLEHFKSVLAND  223 (547)
Q Consensus       156 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LVlP~L~~~s~W~D------~S~F~DIFD~dhFI~~L~~d  223 (547)
                      ..++||+-.. .| |.|.||...-.|.++|+.||.|    ||||-...-.=|.-      .-.|++.||++++.    ..
T Consensus        20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~~   95 (408)
T 4ap5_A           20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----KN   95 (408)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----TT
T ss_pred             cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----hh
Confidence            4689999876 45 8999999999999999999999    99996643222432      23699999998753    34


Q ss_pred             cEEe------ccC-----cccc-----cc-------cCCccc-----------ccCCCCCChhHHHHH------------
Q 008992          224 VRIV------SSL-----PSTH-----IM-------TRPVEE-----------KRTPLHVSPQWIRAR------------  257 (547)
Q Consensus       224 VrIV------k~L-----P~~~-----~~-------~~~~~~-----------~~vp~~~sp~~y~~~------------  257 (547)
                      |+||      +++     |..+     ..       ......           ...-+...|.|-...            
T Consensus        96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~  175 (408)
T 4ap5_A           96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ  175 (408)
T ss_dssp             SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred             CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence            4554      111     1000     00       000000           000000122331111            


Q ss_pred             -----HHHhhhhc---ceEEEeccCccccCCCC-hhhhhhhhhhcccccccChhHHHHHHHHHHHHHhcCCeEEeeccch
Q 008992          258 -----YLRRLNRE---GVLLLRGLDSRLSKDLP-SDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRME  328 (547)
Q Consensus       258 -----vlP~L~k~---~VI~l~~~d~RLa~~lP-~diQrLRCrvnf~ALrF~p~I~~Lg~~LV~RmR~~GpyiALHLR~E  328 (547)
                           +.|.+.+.   .-+-+..+...|+.-.. .+...+|     ..|+|++.|.+.|++.++..- +++|+++|+|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~  249 (408)
T 4ap5_A          176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ  249 (408)
T ss_dssp             SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred             ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence                 12333222   12222233333332211 2233333     479999999999999988765 568999999999


Q ss_pred             hhhhhhhcCCCCchhhHHHHHHHhhccccccccCCCChHHHhhCCCCCCCHHHHHHHHHHcCCCCCcEEEEeecccCCcc
Q 008992          329 KDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGK  408 (547)
Q Consensus       329 ~DMlAfsgC~~g~e~~e~l~~~R~~~~~~~~~~~~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAaGeiyGg~  408 (547)
                      .|+...  |........  ..  ..--++..+....     -....+|-.++-+..+.+.|.=.+-+.||||+-+   .+
T Consensus       250 ~dw~~~--~~~~~~~~~--~~--y~~~H~Rr~d~~~-----~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~  315 (408)
T 4ap5_A          250 EDWMKM--KVKLGSALG--GP--YLGVHLRRKDFIW-----GHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VR  315 (408)
T ss_dssp             SSGGGC--CCCTTCBCC--EE--EEEEEECCTTTTT-----TTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CH
T ss_pred             hhHhhh--hcccccccC--CC--ccccccccccchh-----hhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---ch
Confidence            988764  443210000  00  0000110000000     0112334333333333333322234579999865   34


Q ss_pred             ccccchHhhCCCceecccCCCcccccccccchhhhhHhhhhhhcCCceeeeCCCCchhhhhhhhccccCCCc
Q 008992          409 EALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQGHRAYAGHMK  480 (547)
Q Consensus       409 ~~L~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~~AALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k  480 (547)
                      ..+..|++.+|.++.-..  ..+++..+  .....|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus       316 ~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~  383 (408)
T 4ap5_A          316 KEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP  383 (408)
T ss_dssp             HHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred             hHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence            456788999997753222  12333333  235679999999999999999999999999999999999864

PyMOL of 4ap5

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*	Back alignment and structure

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}	Back alignment and structure

>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00