Citrus Sinensis ID: 009013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
Protein Sequence
MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEcccccccccccccccccccEEEEccccccccccccccccccEEEEEEEcccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEccHHHHHHccccccHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEcccEEEEEEEEccccEEEEEEEEccccccccEEEEEEccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccEEEEEEccccccccccccccccEEEEEccccccEEEEEccccccEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHcHHEEEccccEEEEEEEEccccccccHHcccccccccccccccccccccHccccccccHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEccHHHHcccccccccccccHccEEEEEEEccEEEEEEcccccccEccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHcccEcccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEcccccHHcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtrpkalpnevlsdlsvsaATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRqrvaapasgnegftidlfdnslydsapvsrpsslstiridhdsagmlainlppnscrsfrfgflgvqsgdsskqcskvknscsprpskeakesvnddecvrEKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLslipsnqgdlsvDSWVNQnvesgilpldshdgvklaeeKDDIlrksggypnpltYEIYLQQVFHEYLygraknkpistgtrvsgpptkdgsgllgHFCLSLAHRIFSNKVHVELenavcgvpylhlvshptwhsrtsswTVFLKVPqsilhaesnsrtaetAKSHfrtnvvvnddcihvegegtpnVVGLFKgrsedmssmnkydcdladlpVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSfeldqgetvslvahvdpedmrgcISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Flexible Loop (DISEMBL)
mtrpkalpnevlsdlsvSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAapasgnegfTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQsgdsskqcskvknscsprpskeakesvnddeCVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESgilpldshdgvKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAesnsrtaetakshfrtnVVVNDdcihvegegtpnvvGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Low Complexity Region (SEG)
MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQlgiglgisiflslipsNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Disordered region (IsUnstruct)
**************LSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYD************IRIDHDSAGMLAINLPPNSCRSFRFGFLGV*************************************HSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLA***DDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAK*******************GLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILH************SHFRTNVVVNDDCIHVEGEGTPNVVGLFKG*******MNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCG****
Disordered Region (DISOPRED)
************SDLSVSAATKLQCYRHLGIYF**********IAKEARFYGALIRLQQNWKV*************GFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLG**************************************HSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIP******************GILPLDSHDGV*******************LTYEIYLQQVFHEYL*************************LLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILH***********KSHFRTNVVVNDDCIHVEGEGTPNV***********SSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGF******************KFLGHLSLDVLYSTLMDLVSLCGG***
Disordered Region (DISEMBL)
********NEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWK*********ASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQ********************************VREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHA**********KSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Disordered Region (DISPRO)
****KALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQ***************************NDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPS************************************I***SGGYPNPLTYEIYLQQVFHEYLYGRAKN****************GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSR*AETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAE**********ASDYKKFLGHLSLDVLYSTLMDLVSLCGG***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQNWKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSLCGGGSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	546	2.2.26 [Sep-21-2011]
F4K460	653	Mediator of RNA polymeras	yes	no	0.970	0.811	0.582	1e-178

>sp|F4K460|MED17_ARATH Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana GN=MED17 PE=1 SV=1

 Score =  625 bits (1611), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/551 (58%), Positives = 406/551 (73%), Gaps = 21/551 (3%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK +PNE+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+N
Sbjct: 110 MTRPKPMPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRN 169

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR+ A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S
Sbjct: 170 WKVKRQRMLASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDS 229

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQA 178
             S RFG++G+    +S +  +  +S +    P    K S +DD+ V+E HSLLREVH++
Sbjct: 230 WYSLRFGYVGLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKS 289

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQ+FD++NREAF + +G N++G+REN++++ IG G S+F+SL PS +      S   
Sbjct: 290 IFAEQLFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS--- 346

Query: 239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
              ES  L ++S   V+ AE  D  L+K  G+PN  +YEIYLQQ+FHE+ +G+AK++  S
Sbjct: 347 ---ESATLLIESSGRVEPAEGGDYRLKKL-GFPNRTSYEIYLQQIFHEHAFGKAKDQLKS 402

Query: 299 TGTRVSGPPTKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRT 357
              R S    KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRT
Sbjct: 403 KSIRASNQTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRT 462

Query: 358 SSWTVFLKVPQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
           SSWTVF+ VP SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K
Sbjct: 463 SSWTVFMTVPPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLK 522

Query: 414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
             S ++ S+NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +G
Sbjct: 523 SSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEG 582

Query: 474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
           E VSLVAHV+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS 
Sbjct: 583 ERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSV 635

Query: 534 LMDLVSLCGGG 544
           LMDL++LCG G
Sbjct: 636 LMDLINLCGTG 646

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
224130170	667	predicted protein [Populus trichocarpa]	0.998	0.817	0.698	0.0
225445450	660	PREDICTED: uncharacterized protein LOC10	1.0	0.827	0.690	0.0
356513925	659	PREDICTED: uncharacterized protein LOC10	0.989	0.819	0.627	0.0
449447591	662	PREDICTED: mediator of RNA polymerase II	0.985	0.812	0.641	0.0
356563049	660	PREDICTED: uncharacterized protein LOC10	0.989	0.818	0.620	0.0
357478013	856	hypothetical protein MTR_4g114100 [Medic	0.992	0.633	0.592	0.0
145358255	653	RNA polymerase II transcription mediator	0.970	0.811	0.582	1e-176
297812205	652	hypothetical protein ARALYDRAFT_351112 [	0.968	0.811	0.581	1e-175
118481027	366	unknown [Populus trichocarpa]	0.659	0.983	0.691	1e-147
222617546	655	hypothetical protein OsJ_37013 [Oryza sa	0.976	0.813	0.503	1e-143

>gi|224130170|ref|XP_002328671.1| predicted protein [Populus trichocarpa] gi|222838847|gb|EEE77198.1| predicted protein [Populus trichocarpa]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/554 (69%), Positives = 455/554 (82%), Gaps = 9/554 (1%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNE+L+DL+VS ATKLQCYR+LG YFKQSAK+LEQQ+A+EARFYGALIRLQQN
Sbjct: 115 MTRPKPLPNEILADLAVSTATKLQCYRNLGKYFKQSAKALEQQVAREARFYGALIRLQQN 174

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQRVAA A GNEGF IDLFDNSLYDS  V +PSSLSTIRIDHDS GMLAINLP  S
Sbjct: 175 WKVKRQRVAAIAPGNEGFMIDLFDNSLYDSVAVFQPSSLSTIRIDHDSDGMLAINLPSKS 234

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPR-PSKEA-KESVNDDECVREKHSLLREVHQA 178
           C S  FGFL   S +  K+ +K+K   S + PSK   KES++D+ECV++ H LLR+VH+ 
Sbjct: 235 CHSLVFGFLSGHS-NVPKKSNKIKTHGSLKNPSKNPEKESLSDNECVKDTHLLLRKVHRT 293

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQVFD+VNR A  QS G+NVTGI+ENYLQL IG GISIF+S++PS+QGD ++DS   
Sbjct: 294 IFDEQVFDMVNRGAVNQSSGLNVTGIQENYLQLCIGPGISIFISIVPSDQGDQAIDSEGP 353

Query: 239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
           +N+ES ++PLDS DGVKLAEEK + L K   +PN +TYEIYL+Q+FHEY++  AK +P  
Sbjct: 354 ENLESAVVPLDSFDGVKLAEEKHNSLTKKPRFPNCITYEIYLKQIFHEYVFVEAKGRPSF 413

Query: 299 TGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTS 358
           TGTR+ G P  DGSGLL HFCLSL+HRI SNKV +ELEN VC VPYLHL+SHPTWHSR+S
Sbjct: 414 TGTRMPGQPANDGSGLLSHFCLSLSHRIISNKVLMELENVVCRVPYLHLISHPTWHSRSS 473

Query: 359 SWTVFLKVPQSILHAESNSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLF 412
           +WT+F+K+P SILHA S +RT +        KS F T VVV+DDCI++E EG PNVVGLF
Sbjct: 474 AWTIFMKIPPSILHASSQTRTPDIQNMKNVVKSEFWTKVVVHDDCINIEAEGAPNVVGLF 533

Query: 413 KGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQ 472
           K  S+D  S NKYDC+L DLPVIILQQVASQVIRWLHEEAL VGIKANRDFL LSFEL+Q
Sbjct: 534 KDSSDDKCSTNKYDCNLDDLPVIILQQVASQVIRWLHEEALAVGIKANRDFLCLSFELEQ 593

Query: 473 GETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYS 532
           GE ++LVAHVDPED +GCISWWL MEDGFA E+KL ++I+D AS+Y+KFLG+L LDVLYS
Sbjct: 594 GEILNLVAHVDPEDTQGCISWWLTMEDGFAEEKKLHMNIADGASEYRKFLGYLPLDVLYS 653

Query: 533 TLMDLVSLCGGGSH 546
           TLMDLVSLCGGGSH
Sbjct: 654 TLMDLVSLCGGGSH 667

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445450|ref|XP_002285089.1| PREDICTED: uncharacterized protein LOC100266409 [Vitis vinifera] gi|147821405|emb|CAN63500.1| hypothetical protein VITISV_011675 [Vitis vinifera] gi|297738929|emb|CBI28174.3| unnamed protein product [Vitis vinifera]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/555 (69%), Positives = 452/555 (81%), Gaps = 9/555 (1%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNEVLSDL VSAATKLQC+RHL  YFKQSAK+LEQQIA+EARFYGALIRLQQN
Sbjct: 106 MTRPKPLPNEVLSDLGVSAATKLQCFRHLSKYFKQSAKALEQQIAREARFYGALIRLQQN 165

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQRVAA A GNEGF+IDLF NSL+D   V RPSSLST+R+DHDSAGMLA++LPPNS
Sbjct: 166 WKVKRQRVAASAPGNEGFSIDLFSNSLHDPVAVFRPSSLSTVRVDHDSAGMLAVHLPPNS 225

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPR-PSKEAKESVNDDECVREKHSLLREVHQAI 179
           CR+  FGFLG   G+  K+ SK K       PSKE K+ ++D+ECV+E HS+LRE HQAI
Sbjct: 226 CRALHFGFLGGHLGNIPKEPSKTKTYGPDELPSKEIKKPLSDNECVKETHSVLREGHQAI 285

Query: 180 FYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQ 239
           F EQVFD+VNREAF  S GVNVTGIRENYLQL IG G S+F+SL+PS Q + + D    Q
Sbjct: 286 FDEQVFDLVNREAFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQ 345

Query: 240 NVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIST 299
           N+ES ILP+D+ DGVKL++ K D  +K  G+PN ++ EIYL+Q+FHE+++ RAK+K IS 
Sbjct: 346 NLESAILPMDTFDGVKLSDGKHDNDKKKSGFPNRISSEIYLKQLFHEHVFVRAKDKHISA 405

Query: 300 G-TRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTS 358
           G T+ S  P KDG GLLGHFC+SLAHRIFS+KV +ELEN V  VPYLHL+SHPTWHSRTS
Sbjct: 406 GRTQPSSQPAKDGFGLLGHFCMSLAHRIFSSKVLMELENLVSRVPYLHLLSHPTWHSRTS 465

Query: 359 SWTVFLKVPQSILHAESNSRTAET------AKSHFRTNVVVNDDCIHVEGEGTPNVVGLF 412
           SWT+ +KVP+S  H    +RT++        K+HFRT VV+NDDCI+VEG+G PNVVGLF
Sbjct: 466 SWTLLMKVPESSFHPGCQTRTSDIHNVKNIIKTHFRTKVVINDDCINVEGDGAPNVVGLF 525

Query: 413 KGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQ 472
           KG SED+ SMN+YDCDLAD+PVI+LQQVASQVIRWLHEEAL VGIKANRDFL LSFE+DQ
Sbjct: 526 KGSSEDVCSMNRYDCDLADIPVILLQQVASQVIRWLHEEALKVGIKANRDFLCLSFEMDQ 585

Query: 473 GETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYS 532
           GE +SLVAHV+P+D +GCISWWLVM+DGF+ + K   D  D  S+Y+KFLGHLSL+VLYS
Sbjct: 586 GEMLSLVAHVNPDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGSEYRKFLGHLSLEVLYS 645

Query: 533 TLMDLVSLC-GGGSH 546
           TLMDLVSLC GGG H
Sbjct: 646 TLMDLVSLCNGGGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513925|ref|XP_003525658.1| PREDICTED: uncharacterized protein LOC100810597 [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/551 (62%), Positives = 434/551 (78%), Gaps = 11/551 (1%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNE LSDL+VSAATKLQCYRH+G YFKQSAK+ EQQ+A+EARFYGALIRLQQN
Sbjct: 110 MTRPKLLPNEALSDLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQN 169

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR AA   GNEGFT DLFDNS YD A + R  S+ST+R++HD+AG LAIN+ P+ 
Sbjct: 170 WKVKRQRQAAIVPGNEGFTFDLFDNS-YDQAAIIRSLSMSTVRVNHDAAGNLAINVSPDL 228

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPS--KEAKESVNDDECVREKHSLLREVHQA 178
           C S +FGF+G QS D+ ++ ++ K+  S   +  K  +ES++D+ECV++ HSLLREVH+A
Sbjct: 229 CHSLQFGFVGAQSDDTRRKSNQNKSHFSGELNLGKTGEESLSDEECVKKTHSLLREVHEA 288

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQVFD+VNREAF    GV+VTGIRENYLQL +G   S++L+L+ ++Q   +V+  + 
Sbjct: 289 IFNEQVFDLVNREAFNTVAGVSVTGIRENYLQLSLGQETSVYLTLVSNSQDHSTVEGELT 348

Query: 239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
            N E+ ILPL+S DG+K  E K +   K G + N + YEIY+QQ+FHEY++G+  +KP S
Sbjct: 349 DNAENAILPLESSDGMK-REAKQNTSNK-GQFSNSICYEIYIQQIFHEYIFGKGGDKPSS 406

Query: 299 TGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTS 358
           +G R+SG   KDGS LLGHF  SLAHRIFS KV  ELEN VC VPY+ L+S+PTWHSR S
Sbjct: 407 SGNRLSGIQAKDGSSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYIQLISNPTWHSRAS 466

Query: 359 SWTVFLKVPQSILHAESNSRTAE-----TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
           SWT++++VPQSIL   S ++T++       K  F T VVVNDDCI+V+ EG+PNV GLFK
Sbjct: 467 SWTLYMEVPQSILRG-SQTKTSDYYEKNAVKRQFWTKVVVNDDCINVKAEGSPNVAGLFK 525

Query: 414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
           G+ E+  S+NKY+C+LADLPVIILQQVASQ+I WL++EA+MVGIKANRDFL LS EL+QG
Sbjct: 526 GKIEETHSINKYNCNLADLPVIILQQVASQIINWLYQEAMMVGIKANRDFLCLSLELEQG 585

Query: 474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
           ET+ LVA VDPED  GCISWWLVMED FA E+KL + I+D AS+Y+KFLGHLSLD+LY+T
Sbjct: 586 ETLGLVASVDPEDSEGCISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYAT 645

Query: 534 LMDLVSLCGGG 544
           L+DLVSLC GG
Sbjct: 646 LIDLVSLCSGG 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447591|ref|XP_004141551.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Cucumis sativus] gi|449481525|ref|XP_004156208.1| PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Cucumis sativus]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/555 (64%), Positives = 433/555 (78%), Gaps = 17/555 (3%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNEVL+DL VS ATKLQC+RHLG YFKQSAK LE+Q+A+EARFYGALIRLQQN
Sbjct: 108 MTRPKPLPNEVLADLGVSVATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIRLQQN 167

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQRVAAPA  NEGFTIDLFDNS  D + V RPSS STIR+DHDS+GMLAINLPPNS
Sbjct: 168 WKVKRQRVAAPAPANEGFTIDLFDNSSCDPSSVFRPSS-STIRVDHDSSGMLAINLPPNS 226

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEA-----KESVNDDECVREKHSLLREV 175
           C S RFGFL   SG + +   +   + S  PS ++     KE  NDDE ++E +SLLR+V
Sbjct: 227 CHSLRFGFL---SGCNVENPLERDKNESTNPSNQSSVNREKEFTNDDEYIKETNSLLRQV 283

Query: 176 HQAIFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDS 235
           H AIF EQVFD+VN+EAF  S+G+NVTGIRENYLQL I  G S+F+SL+PS Q   +V+ 
Sbjct: 284 HHAIFSEQVFDLVNQEAFNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEG 343

Query: 236 WVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNK 295
             ++ +E+  LP DS DG++L + + D L K    PN +T+EIYLQQ+FHE ++ ++ ++
Sbjct: 344 ANSEILENASLPFDSLDGIELPD-RSDPLEKKLRNPNHITFEIYLQQIFHELVFVKSNDR 402

Query: 296 PISTGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHS 355
           PIS+ +R SG  + DGSGLLGHFCLSLAHR+F+N V +ELEN V  VP+L L+SHPTW+S
Sbjct: 403 PISSLSRQSGQVSNDGSGLLGHFCLSLAHRMFANNVLMELENVVWKVPFLQLISHPTWNS 462

Query: 356 RTSSWTVFLKVPQSILHAES-NSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNV 408
           R SSWT F++VP SILH  S  +RT++        K+ F T VVVNDDCI +EGEG PNV
Sbjct: 463 RKSSWTFFMEVPWSILHPNSIKARTSDGYQMNNVTKTQFLTKVVVNDDCITIEGEGAPNV 522

Query: 409 VGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSF 468
           VGLF G S+D+ S N+Y CDLADLPVIIL QVASQ+I WLHEEAL+ GIKANRDFLSLSF
Sbjct: 523 VGLFNGNSKDIYSTNRYSCDLADLPVIILLQVASQIILWLHEEALIWGIKANRDFLSLSF 582

Query: 469 ELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLD 528
           EL+QGET+ LVAHVDPED +GC+SWWLVM+DG   +RKL+ + SD   +Y+KFLGHLSL+
Sbjct: 583 ELEQGETLRLVAHVDPEDPQGCLSWWLVMDDGLMEDRKLNFETSDVVPEYRKFLGHLSLE 642

Query: 529 VLYSTLMDLVSLCGG 543
           VL+STLMDLVSLC G
Sbjct: 643 VLHSTLMDLVSLCSG 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563049|ref|XP_003549778.1| PREDICTED: uncharacterized protein LOC100778422 [Glycine max]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/551 (62%), Positives = 431/551 (78%), Gaps = 11/551 (1%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNE LSDL+VSAATKLQCYRH+G YFKQSAK+ EQQ+A+EARFYGALIRLQQN
Sbjct: 111 MTRPKLLPNEALSDLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQN 170

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR AA   GNEGFT DL DNS YD A + R  S+ST+R++HD+AGMLAIN+ P+ 
Sbjct: 171 WKVKRQRQAAIVPGNEGFTFDLLDNS-YDQAAIIRSLSMSTVRVNHDAAGMLAINVSPDL 229

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPS--KEAKESVNDDECVREKHSLLREVHQA 178
           C S +FGF+G QS D+ ++ ++ K+  S   +  +  +ES++D+ECV++ +SLLREVH+A
Sbjct: 230 CHSLQFGFVGAQSDDTWRKSNENKSHFSGEHNLGEMGEESLSDEECVKKTNSLLREVHEA 289

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQVFD+VNREAF    GV+VTGIRENYLQL +G G S++L+L+ ++Q   +V+  +N
Sbjct: 290 IFNEQVFDLVNREAFNTVAGVSVTGIRENYLQLSLGQGTSVYLTLVSNSQDHSTVEDELN 349

Query: 239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
            NVE+ ILPL+S DG+K   E      K G + N + YEIY+QQ+FHE+++G+   K IS
Sbjct: 350 DNVENAILPLESSDGMK--REAKQNTSKKGQFSNSICYEIYIQQIFHEHIFGKGDEKAIS 407

Query: 299 TGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTS 358
           +G R+SG   +DGS LLGHF  SLAHRIFS KV  ELEN VC VPYL L+S+PTW+SR S
Sbjct: 408 SGNRLSGVQARDGSSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWNSRAS 467

Query: 359 SWTVFLKVPQSILHAESNSRTAE-----TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
           SWT++++VPQSIL   S ++T++      AK  F T VVVNDDCI+V+ EG+PNV GLFK
Sbjct: 468 SWTLYMEVPQSILRG-SQTKTSDYYEKNAAKRQFWTKVVVNDDCINVKAEGSPNVAGLFK 526

Query: 414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
           G+ E+  S+NKY+C+LADLPVIILQQVASQ+I WL++EA+MVGIK NRDFL LS EL QG
Sbjct: 527 GKIEETHSINKYNCNLADLPVIILQQVASQIINWLYQEAMMVGIKVNRDFLCLSLELKQG 586

Query: 474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
           ET+ LVA VDPED   CISWWLVMED FA E+KL + I+D AS+Y+KFLGHLSLD+LY+T
Sbjct: 587 ETLGLVASVDPEDSEECISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYAT 646

Query: 534 LMDLVSLCGGG 544
           L+DLV LC GG
Sbjct: 647 LIDLVGLCSGG 657

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478013|ref|XP_003609292.1| hypothetical protein MTR_4g114100 [Medicago truncatula] gi|355510347|gb|AES91489.1| hypothetical protein MTR_4g114100 [Medicago truncatula]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/550 (59%), Positives = 413/550 (75%), Gaps = 8/550 (1%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK+LPNE LSDL+VSAATKLQCYR +G YFKQSAK+ EQQ+A+EARFYGALIRLQQN
Sbjct: 109 MTRPKSLPNEALSDLAVSAATKLQCYRQVGKYFKQSAKAFEQQVAREARFYGALIRLQQN 168

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR  +   GNEGFT DLFDNS YD   + R SS+ST+R++HD+AGMLAIN+ P  
Sbjct: 169 WKVKRQRQTSLVPGNEGFTFDLFDNS-YDQGAIVRSSSMSTVRVNHDAAGMLAINVSPEL 227

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRP--SKEAKESVNDDECVREKHSLLREVHQA 178
           C S +FGF+  Q  D  K+ ++ ++         +   ES +D+ECV++ HSLLR+VHQA
Sbjct: 228 CHSLQFGFVSAQPDDMQKKSNENQSHLLGEDCLGETGIESSSDEECVKKTHSLLRDVHQA 287

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQVFD+VNREAF  S G  +TGIRENYLQL +G G S++LSL+ + Q + +V+  + 
Sbjct: 288 IFNEQVFDLVNREAFNTSTGFTLTGIRENYLQLSLGQGTSVYLSLVSTGQDNPTVEGELT 347

Query: 239 QNVESGIL-PLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPI 297
            N +     PL+S D V + + + + L+K G + N   YEIY+QQ++HE+++GR   KPI
Sbjct: 348 NNADDNAFSPLESSD-VLMHDAQQNTLKKKGRHSNSTCYEIYIQQIYHEHIFGRGSEKPI 406

Query: 298 STGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRT 357
           S+G R+SG   KDGS LL HF +SLAHRIFS K+  ELEN V  VPYL L+S+PTWHSR 
Sbjct: 407 SSGNRLSGAQAKDGSYLLSHFFMSLAHRIFSTKILAELENVVFKVPYLQLISNPTWHSRG 466

Query: 358 SSWTVFLKVPQSIL---HAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKG 414
           SSWT+F++VP SIL     +++       K  F T VVV DDCI V+ EG+PNV GLFKG
Sbjct: 467 SSWTLFMEVPPSILRGCQVKTSDFENNAIKRQFWTKVVVIDDCISVKAEGSPNVSGLFKG 526

Query: 415 RSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGE 474
           +SED  S+NKYDC+LADLPVIILQQVASQ+I WL+ EALMVGIKANRDFL LSFEL+QGE
Sbjct: 527 KSEDTHSINKYDCNLADLPVIILQQVASQIINWLYHEALMVGIKANRDFLCLSFELEQGE 586

Query: 475 TVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTL 534
           T+ LVA+VDP+D  GCISW LVMED FA  +KL  +++D AS+Y+KFLG LSL++LY+TL
Sbjct: 587 TLGLVANVDPKDSDGCISWSLVMEDSFAEVQKLHTNLTDGASEYRKFLGPLSLELLYATL 646

Query: 535 MDLVSLCGGG 544
           +DL++   GG
Sbjct: 647 IDLIAFVSGG 656

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358255|ref|NP_197517.3| RNA polymerase II transcription mediator [Arabidopsis thaliana] gi|395406781|sp|F4K460.1|MED17_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 17 gi|332005425|gb|AED92808.1| RNA polymerase II transcription mediator [Arabidopsis thaliana]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 321/551 (58%), Positives = 406/551 (73%), Gaps = 21/551 (3%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK +PNE+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+N
Sbjct: 110 MTRPKPMPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRN 169

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR+ A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S
Sbjct: 170 WKVKRQRMLASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDS 229

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQA 178
             S RFG++G+    +S +  +  +S +    P    K S +DD+ V+E HSLLREVH++
Sbjct: 230 WYSLRFGYVGLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKS 289

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVN 238
           IF EQ+FD++NREAF + +G N++G+REN++++ IG G S+F+SL PS +      S   
Sbjct: 290 IFAEQLFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS--- 346

Query: 239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
              ES  L ++S   V+ AE  D  L+K  G+PN  +YEIYLQQ+FHE+ +G+AK++  S
Sbjct: 347 ---ESATLLIESSGRVEPAEGGDYRLKKL-GFPNRTSYEIYLQQIFHEHAFGKAKDQLKS 402

Query: 299 TGTRVSGPPTKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRT 357
              R S    KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRT
Sbjct: 403 KSIRASNQTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRT 462

Query: 358 SSWTVFLKVPQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
           SSWTVF+ VP SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K
Sbjct: 463 SSWTVFMTVPPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLK 522

Query: 414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
             S ++ S+NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +G
Sbjct: 523 SSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEG 582

Query: 474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
           E VSLVAHV+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS 
Sbjct: 583 ERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSV 635

Query: 534 LMDLVSLCGGG 544
           LMDL++LCG G
Sbjct: 636 LMDLINLCGTG 646

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812205|ref|XP_002873986.1| hypothetical protein ARALYDRAFT_351112 [Arabidopsis lyrata subsp. lyrata] gi|297319823|gb|EFH50245.1| hypothetical protein ARALYDRAFT_351112 [Arabidopsis lyrata subsp. lyrata]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 321/552 (58%), Positives = 404/552 (73%), Gaps = 23/552 (4%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           MTRPK LPNE+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+N
Sbjct: 110 MTRPKPLPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRN 169

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR+ A  + NEGFTIDL D+SL+D     RPS+LSTIR+DHDSAGMLAIN+P +S
Sbjct: 170 WKVKRQRMLASNASNEGFTIDLSDSSLHDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDS 229

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPR--PSKEAKESVNDDECVREKHSLLREVHQA 178
             S RFGF+G+   D++ +  +  +S      P    K+S +DDE V+E HSLLREVH++
Sbjct: 230 WYSLRFGFVGLNPIDNTNESDEHLDSTMGHDIPGTSEKQSASDDEYVKETHSLLREVHKS 289

Query: 179 IFYEQV-FDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWV 237
           IF EQV FD++NREAF + +G N++GIREN++++ IG G S+F+SL PS + + S+    
Sbjct: 290 IFAEQVLFDMLNREAFNEGVGFNISGIRENFMEMSIGQGASLFVSLHPSGK-NASI---- 344

Query: 238 NQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPI 297
            +  ES  L ++S   ++ AE   D   K  G+PN  +YEIYLQQ+FHE+ +G+AK++P 
Sbjct: 345 -KKSESATLLIESSGRIEPAE--GDYRLKKLGFPNRASYEIYLQQIFHEHAFGKAKDQPK 401

Query: 298 STGTRVSGPPTKD-GSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSR 356
           S   R S    KD  SGLL HFCLSL HRIFSN+V   LE+ VC VPYLHL+SHPTW+SR
Sbjct: 402 SKSIRASNQTRKDSNSGLLDHFCLSLTHRIFSNRVLEHLESVVCKVPYLHLISHPTWNSR 461

Query: 357 TSSWTVFLKVPQSILHAESNSRTAETAKSH----FRTNVVVNDDCIHVEGEGTPNVVGLF 412
           TSSWTVF+ VP SI+   S+   +   K +    FRT VVV D+CI VE E TPNVVGL 
Sbjct: 462 TSSWTVFMTVPPSIIPQGSSETQSPDGKRNLKMQFRTKVVVKDECISVEAECTPNVVGLL 521

Query: 413 KGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQ 472
           K  S ++ +MNKY+C +ADLPVIILQQVASQ++ WL EEA  VG KA+RDFLSLS E+ +
Sbjct: 522 KSSSCNLFAMNKYECGVADLPVIILQQVASQIVCWLLEEARTVGTKASRDFLSLSLEIVE 581

Query: 473 GETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYS 532
           GE VSLVA V+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS
Sbjct: 582 GERVSLVAQVNPEDAKGCISWWLVMENGSTEER-------EGVSESRKLLGHLSLDVLYS 634

Query: 533 TLMDLVSLCGGG 544
            LMDL++LCG G
Sbjct: 635 VLMDLINLCGTG 646

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481027|gb|ABK92467.1| unknown [Populus trichocarpa]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/366 (69%), Positives = 301/366 (82%), Gaps = 6/366 (1%)

Query: 187 IVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVESGIL 246
           +VNR A  QS G+NVTGI+ENYLQL IG GISIF+S++PS+QGD ++DS   +N+ES ++
Sbjct: 1   MVNRGAVNQSSGLNVTGIQENYLQLCIGPGISIFISIVPSDQGDQAIDSEGPENLESAVV 60

Query: 247 PLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGP 306
           PLDS DGVKLAEEK + L K   +PN +TYEIYL+Q+FHEY++  AK +P  TGTR+ G 
Sbjct: 61  PLDSFDGVKLAEEKHNSLTKKPRFPNCITYEIYLKQIFHEYVFVEAKGRPSFTGTRMPGQ 120

Query: 307 PTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRTSSWTVFLKV 366
           P  DGSGLL HFCLSL+HRI SNKV +ELEN VC VPYLHL+SHPTWHSR+S+WT+F+K+
Sbjct: 121 PANDGSGLLSHFCLSLSHRIISNKVLMELENVVCRVPYLHLISHPTWHSRSSAWTIFMKI 180

Query: 367 PQSILHAESNSRTAE------TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRSEDMS 420
           P SILHA S +RT +        KS F T VVV+DDCI++E EG PNVVGLFK  S+D  
Sbjct: 181 PPSILHASSQTRTPDIQNMKNVVKSEFWTKVVVHDDCINIEAEGAPNVVGLFKDSSDDKC 240

Query: 421 SMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQGETVSLVA 480
           S NKYDC+L DLPVIILQQVASQVIRWLHEEAL VGIKANRDFL LSFEL+QGE ++LVA
Sbjct: 241 STNKYDCNLDDLPVIILQQVASQVIRWLHEEALAVGIKANRDFLCLSFELEQGEILNLVA 300

Query: 481 HVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYSTLMDLVSL 540
           HVDPED +GCISWWL MEDGFA E+KL ++I+D AS+Y+KFLG+L LDVLYSTLMDLVSL
Sbjct: 301 HVDPEDTQGCISWWLTMEDGFAEEKKLHMNIADGASEYRKFLGYLPLDVLYSTLMDLVSL 360

Query: 541 CGGGSH 546
           CGGGSH
Sbjct: 361 CGGGSH 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617546|gb|EEE53678.1| hypothetical protein OsJ_37013 [Oryza sativa Japonica Group]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 282/560 (50%), Positives = 370/560 (66%), Gaps = 27/560 (4%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           M +PK+LP E L D +VSAATKLQ  RHL  YFKQSAK++EQQ  KE+RFYG+LIRLQQN
Sbjct: 108 MLKPKSLPTETLVDTAVSAATKLQRVRHLSRYFKQSAKTMEQQFQKESRFYGSLIRLQQN 167

Query: 61  WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
           WKVKRQR      G+EGF  DL D S  D+A + R SSL  I ID DS+G L++ +P  S
Sbjct: 168 WKVKRQRFGGSGPGSEGFMFDLIDTSQLDTAAMPRLSSLPLIPIDQDSSGTLSVQVPQKS 227

Query: 121 CRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDD--ECVREKHSLLREVHQA 178
           CR     F G  +        K+K+  S   S  + E+ NDD  + ++  HS+LR +H++
Sbjct: 228 CRFLSLNFRGDSANGVENYGHKLKDGIS---SITSSETDNDDVNKSIKHAHSILRNIHKS 284

Query: 179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLS--VDSW 236
           IF EQVFD+V RE F QS G+NVTG+RE++LQL IG   S+ LSL  S  G  S  VD  
Sbjct: 285 IFEEQVFDMVIRETFVQSQGINVTGMREDFLQLAIGQECSLCLSLAHSGDGSDSEMVDHE 344

Query: 237 VNQNVE-SGILPLDSHDGVKLAEEKDDILRKS-GGYPNPLTYEIYLQQVFHEYLYGRAKN 294
            + N E +  L L + +G      K D LRK   G+PNP + EIYL Q+FHE +  + + 
Sbjct: 345 DHANSEDASNLVLVTMNG------KLDPLRKDVTGFPNPRSLEIYLLQLFHENILRKVRE 398

Query: 295 KPISTGTRVSGPP--TKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPT 352
           K ++ G R   P     D  GLLGHFCL++AHRIFSNKV VELE+ V  VPYLHL S PT
Sbjct: 399 KSLNIG-RYQSPAQVAGDDYGLLGHFCLTVAHRIFSNKVLVELESVVSRVPYLHLRSLPT 457

Query: 353 WHSRTSSWTVFLKVPQSILHAESNSRTAET------AKSHFRTNVVVNDDCIHVEGEGTP 406
           WHSRTSSW++ LKVPQ IL A+  ++ ++       ++S F T V+V D  I + GEG+P
Sbjct: 458 WHSRTSSWSLCLKVPQPILAADRIAKPSDNHELKYKSRSQFNTKVIVKDSQISLMGEGSP 517

Query: 407 NVVGLFKGRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSL 466
           ++ G   G+  D   +N Y+CDL DLP ++LQQVASQVI WLHEEAL++G+   RDFL L
Sbjct: 518 SIAGSLTGKPSDGYLVNSYNCDLEDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCL 577

Query: 467 SFELDQGETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLS 526
            F+L+QGET+ LVA+VDP+D  GCISW+L + D    + K+S D  +   + ++FLG++S
Sbjct: 578 YFDLEQGETLGLVANVDPDDTCGCISWYLTI-DHPTEDGKMSADSQE--FEKRRFLGYVS 634

Query: 527 LDVLYSTLMDLVSLCGGGSH 546
           L+VLYSTLMDL++LC  G+H
Sbjct: 635 LEVLYSTLMDLINLCNAGAH 654

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
TAIR|locus:2149294	653	AT5G20170 [Arabidopsis thalian	0.970	0.811	0.566	4.4e-155

TAIR|locus:2149294 AT5G20170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 312/551 (56%), Positives = 397/551 (72%)

Query:     1 MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
             MTRPK +PNE+LSDL+VS ATKLQ YR+LG YFKQSAK+LEQ+I +EARFYGALIRLQ+N
Sbjct:   110 MTRPKPMPNEILSDLAVSTATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIRLQRN 169

Query:    61 WKVKRQRVAAPASGNEGFTIDLFDNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNS 120
             WKVKRQR+ A  + NEGFTIDL D+SLYD     RPS+LSTIR+DHDSAGMLAIN+P +S
Sbjct:   170 WKVKRQRMLASNASNEGFTIDLSDSSLYDPTSGFRPSTLSTIRVDHDSAGMLAINVPQDS 229

Query:   121 CRSFRFGFLGVQS-GDSSKQCSKVKNSCSPR-PSKEAKESVNDDECVREKHSLLREVHQA 178
               S RFG++G+   G+S++    + ++     P    K S +DD+ V+E HSLLREVH++
Sbjct:   230 WYSLRFGYVGLNPIGNSNESDEHIDSTTGHDIPGTSEKLSASDDKYVKETHSLLREVHKS 289

Query:   179 IFYEQVFDIVNREAFKQSLGVNVTGIRENYLQXXXXXXXXXXXXXXXXNQGDLSVDSWVN 238
             IF EQ+FD++NREAF + +G N++G+REN+++                 +   S+     
Sbjct:   290 IFAEQLFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNP-SI----- 343

Query:   239 QNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
             +  ES  L ++S   V+ AE  D  L+K G +PN  +YEIYLQQ+FHE+ +G+AK++  S
Sbjct:   344 KKSESATLLIESSGRVEPAEGGDYRLKKLG-FPNRTSYEIYLQQIFHEHAFGKAKDQLKS 402

Query:   299 TGTRVSGPPTKDG-SGLLGHFCLSLAHRIFSNKVHVELENAVCGVPYLHLVSHPTWHSRT 357
                R S    KD  SGLL HFCLSL HRIFSN+V V LE+ VC VPYLHL+SHPTW+SRT
Sbjct:   403 KSIRASNQTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRT 462

Query:   358 SSWTVFLKVPQSIL---HAESNSRTAE-TAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFK 413
             SSWTVF+ VP SI+    +E+ S   +   K+ FRT VVV DDCI VE E TPNVVGL K
Sbjct:   463 SSWTVFMTVPPSIIPQGRSETQSPDGKRNLKTQFRTKVVVKDDCISVEAECTPNVVGLLK 522

Query:   414 GRSEDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRDFLSLSFELDQG 473
               S ++ S+NKY+CD+ADLPV+ILQQVASQ++ WL EEA  VG KA+R+FLSLS E+ +G
Sbjct:   523 SSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEG 582

Query:   474 ETVSLVAHVDPEDMRGCISWWLVMEDGFAAERKLSIDISDDASDYKKFLGHLSLDVLYST 533
             E VSLVAHV+PED +GCISWWLVME+G   ER       +  S+ +K LGHLSLDVLYS 
Sbjct:   583 ERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVSESRKLLGHLSLDVLYSV 635

Query:   534 LMDLVSLCGGG 544
             LMDL++LCG G
Sbjct:   636 LMDLINLCGTG 646


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      546       530   0.00092  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  323 KB (2165 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.72u 0.14s 43.86t   Elapsed:  00:00:02
  Total cpu time:  43.72u 0.14s 43.86t   Elapsed:  00:00:02
  Start:  Mon May 20 16:52:36 2013   End:  Mon May 20 16:52:38 2013

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4K460	MED17_ARATH	No assigned EC number	0.5825	0.9706	0.8116	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	546
pfam10156	454	pfam10156, Med17, Subunit 17 of Mediator complex	6e-04

>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 33  FKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKR--QRVAAPASGNEGFTIDLFDNSLYD 89
             ++A+ LE+++AKE +++  ++ +++N W + R  Q V        G+          D
Sbjct: 186 LLKAAERLEKEVAKETKYWSEVLNVKENGWVLFRLPQEVQRSLGVKYGYR---------D 236

Query: 90  SAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSF--RFGFLGVQSGDSSKQCSKVKNSC 147
           +    R   L+ +R   D     ++ L P+S  S      FL V+     +    V    
Sbjct: 237 AGSKFRDRGLAVLRRTPDD---GSLELDPSSVGSDLSGSKFLRVRILTKIEDDGIVTGE- 292

Query: 148 SPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQSLGVNVTGIREN 207
               S     S   D+ + ++    R     +F E++F  ++REA +Q +   VT IR+N
Sbjct: 293 ----SSLPTSSQPSDDPIEKRIEKARNT---LFEEELFHELSREA-RQLISYGVT-IRDN 343

Query: 208 YLQLGIGLGISIFLSLIPSNQ 228
            + + +     I + L+  ++
Sbjct: 344 KITIELSPNEKIEIELVSLDE 364

This Mediator complex subunit was formerly known as Srb4 in yeasts or Trap80 in Drosophila and human. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of cerevisiae lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures. Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	546
PF10156	467	Med17: Subunit 17 of Mediator complex; InterPro: I	99.91

>PF10156 Med17: Subunit 17 of Mediator complex; InterPro: IPR019313 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.91  E-value=9.1e-26  Score=231.62  Aligned_cols=277  Identities=20%  Similarity=0.252  Sum_probs=109.4

Q ss_pred             CCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHhhcc-cceeeeeecccCCC--CCceE
Q 009013            3 RPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKRQRVAAPASG--NEGFT   79 (546)
Q Consensus         3 rPK~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiRLQqN-WKVKRQR~~a~~PG--neGF~   79 (546)
                      .|.+.+.+.+.|.+|+.++|++++++.++|||++|+.||+||++|++||+.|+||+|| |+|+|.      |.  ...+.
T Consensus       162 ~~~~~~~~~~~~~~v~~g~K~~aL~~a~~~l~~aa~rL~~~v~~E~~yw~el~~lr~~gW~l~r~------~~~~~~~lg  235 (467)
T PF10156_consen  162 PPPKSESEQLDDAAVSIGWKLKALNKAADLLKQAAERLEKQVERETRYWSELLRLRQNGWRLFRM------PRKRQRSLG  235 (467)
T ss_dssp             ---------SSHHHHTTTTTTTTTSSHHHHHHHHHHHHHTTHHHHHHHHHHTT---------------------------
T ss_pred             CCCCchHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEec------cCCCCceEE
Confidence            4556667777889999999999999999999999999999999999999999999999 999953      22  11133


Q ss_pred             EEccCCCCCCCCCcc-CCCCCeee--------------------eeccCCCceeeeecCCCceeeEEEeeecccCCCCcc
Q 009013           80 IDLFDNSLYDSAPVS-RPSSLSTI--------------------RIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSK  138 (546)
Q Consensus        80 ~Dl~d~s~~D~~~~~-R~ssls~I--------------------~id~Ds~GmLav~vP~~~c~sL~~~f~g~~~~~~~k  138 (546)
                      +|++   ..|.+..+ |...+..+                    +.+......|.|.|..+.|+.-...+.|.       
T Consensus       236 v~~G---~~~ags~f~~~~g~a~lr~~~~~g~~~l~~~~~~~~~~~~~~~~~~lrV~I~~~~~~~~d~~~~g~-------  305 (467)
T PF10156_consen  236 VDYG---FREAGSEFRRDRGFAVLRRSDDTGSLELDPSSSLVSVPSDLKGRKFLRVRIQTKIEDEDDGILTGE-------  305 (467)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEec---CCCCCCccCCCCceeeeccCcccCCcccCcccccccCCccCCCceEEEEEEEeccccCCCCceecC-------
Confidence            3332   22333334 44444444                    44444444555555555444444444441       


Q ss_pred             cccccccCCCCCCCcccccCCCchhhHHHHHHHHHHHHHHhhHHHHHHhHhhhhhc-ccCcceeecccchhhhhccccce
Q 009013          139 QCSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFK-QSLGVNVTGIRENYLQLGIGLGI  217 (546)
Q Consensus       139 ~~e~~~~~~~~~p~~~~~~s~~d~e~vk~thslLR~ih~sIF~EQvFd~v~Reaf~-~s~g~nvtGi~E~~Lql~iGq~~  217 (546)
                                ..+      +.++.++.+..+..|++.|..||+|++|..++|||+. .+.|++|.+   |.+++.++++.
T Consensus       306 ----------s~~------~~~~~~~~~~~~~~l~~Ar~~lFeeELF~~L~REA~~L~s~~v~i~~---n~I~~~~~~~~  366 (467)
T PF10156_consen  306 ----------SSL------PRSSKPDDSPIEKRLEEARNTLFEEELFYQLNREARQLISYGVRIRG---NKIIIELFPNE  366 (467)
T ss_dssp             -----------------------------HHHHTTTTSTHHHHHHHHHHHHHHHHHHHS----SSS----------S-S-
T ss_pred             ----------CCC------cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEc---CEEEEecCCCC
Confidence                      000      1145678889999999999999999999999999995 456677766   99999999999


Q ss_pred             eEEEEeecCCCCCCcccccccccccccccccccCCCccchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCcc
Q 009013          218 SIFLSLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPI  297 (546)
Q Consensus       218 sl~lsLv~s~q~~~~~~~~~~~~~~~a~L~l~t~dg~~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~  297 (546)
                      .+++.|++.+.++.+....... .                       .+..-.--..+|.+.|..+|..++..+.+--+.
T Consensus       367 ~l~ieLv~~~~~~~~~~~~~~~-~-----------------------~~~~a~~i~~~LrlLL~~~hr~nl~~r~~p~~~  422 (467)
T PF10156_consen  367 KLEIELVSLDDDSSSNSSQESP-I-----------------------NDDLADLILHSLRLLLRHAHRQNLRRRSRPPPP  422 (467)
T ss_dssp             -------S----GGGTSTTTTT-T-----------------------T-CTTCHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             EEEEEEecCCCCcccccccCCC-C-----------------------cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            9999999888766433332000 0                       000000011233334444444444444332222


Q ss_pred             ccccccCCCCCCCCCCchhhhhhhhhhhhccchhhhhhhhhhcCc
Q 009013          298 STGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGV  342 (546)
Q Consensus       298 ~~g~~~sg~~~~d~~gLL~HFc~slaHRifS~KV~~eLE~vV~~V  342 (546)
                      .+.+    .+......||..++.-+.|+++-.++...|++++..+
T Consensus       423 ~~~~----~~~~~~~~LLrpil~~~~H~~~~~~~~~~L~~~~~~l  463 (467)
T PF10156_consen  423 LTPR----KRPNPSPSLLRPILGYIRHENLVQRLESILDSLVREL  463 (467)
T ss_dssp             ---------------------TTSTTTTTTSHHHHHHHHTTHHHH
T ss_pred             cccc----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222    2356678999999999999999999999999988654

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med17 of the Mediator complex. The Med17 subunit is located within the head domain and is essential for cell viability to the extent that a mutant strain of Saccharomyces cerevisiae (Baker's yeast) lacking it shows all RNA polymerase II-dependent transcription ceasing at non-permissive temperatures.; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3RJ1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	546
3rj1_B	583	Mediator of RNA polymerase II transcription subun;	4e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae} Length = 583

 Score = 86.5 bits (213), Expect = 4e-18
 Identities = 28/241 (11%), Positives = 80/241 (33%), Gaps = 21/241 (8%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           +        E +    ++   KLQ         + S   L   +  E  ++  +++   N
Sbjct: 162 IPYVAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISN 221

Query: 61  ----WKVKRQRVAAPASGNE-GFTIDLFDNSLYDS--APVSRPSSLSTIRID-HDSAGML 112
               +K++ +         + G+  D      +D   A +        + +  H S+   
Sbjct: 222 KDVIFKIRDRTSGQKLLAIKYGYE-DSGSTYKHDRGIANIRNNIESQNLDLIPHSSSVFK 280

Query: 113 AINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDECVREKHSLL 172
             +   +  +  R         +          S      ++++    + + +R++  LL
Sbjct: 281 GTDFVHSVKKFLRVRIFTKIESEDDYIL-----SGESVMDRDSESEEAETKDIRKQIQLL 335

Query: 173 REVHQAIFYEQVFDIVNREAFK-QSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDL 231
           +++   IF +++   + +E     S GV++    +  ++L         + L+  +   +
Sbjct: 336 KKI---IFEKELMYQIKKECALLISYGVSIENENKVIIELP---NEKFEIELLSLDDDSI 389

Query: 232 S 232
            
Sbjct: 390 V 390

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 83/618 (13%), Positives = 177/618 (28%), Gaps = 178/618 (28%)

Query: 1   MTRPKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN 60
           M +   L  E +  + +S        R       +  + ++       +F   ++R+   
Sbjct: 41  MPKS-ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-------KFVEEVLRINYK 92

Query: 61  WKVKRQRVA--APASGNEGF--TID-LF-DNSLYDSAPVSRPSSLSTIR----------- 103
           + +   +     P+     +    D L+ DN ++    VSR      +R           
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 104 -IDHDSAGM-------LAINLPPNSCRSFR----FGF----LGVQSGDSSKQ-------- 139
            +     G+       +A+    + C S++      F    L +++ +S +         
Sbjct: 153 VLID---GVLGSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 140 CSKVKNSCSPRPSKEAKESVNDDECVREKHSLLREVHQAIFYEQ---VFDIVNR----EA 192
             ++  + + R    +   +       E   LL+       YE    V   V       A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KP---YENCLLVLLNVQNAKAWNA 261

Query: 193 FK---QSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQG---DLSVD---SWVNQNVES 243
           F    + L   +T  R   +   +    +  +SL   +     D        +++   + 
Sbjct: 262 FNLSCKIL---LT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 244 GILPLDSHDGVKL-----AEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPIS 298
             LP +            AE   D            T++   + V  +          I 
Sbjct: 318 --LPREVLTTNPRRLSIIAESIRD---------GLATWD-NWKHVNCD-----KLTTIIE 360

Query: 299 TGTRVSGPPTKDGSGLLGHFCLSLAHRIFSNKVHVELENAVCGVPY--LHLVSHPTWHSR 356
           +   V  P           F   L+  +F    H         +P   L L+    W   
Sbjct: 361 SSLNVLEPAE-----YRKMF-DRLS--VFPPSAH---------IPTILLSLI----WFDV 399

Query: 357 TSSWTVFLKVPQSILHAESNSRTAETAKSHFRTNVVVNDDCIHVEGEGTPNVVGLFKGRS 416
             S          +++        E  K    + + +    I++E           K + 
Sbjct: 400 IKS------DVMVVVNKLHKYSLVE--KQPKESTISIPS--IYLE----------LKVKL 439

Query: 417 EDMSSMNKYDCDLADLPVIILQQVASQVIRWLHEEALMVGIKANRD---FLSLSFEL--- 470
           E+  ++++           I+      + +    + L   I    D   +  +   L   
Sbjct: 440 ENEYALHR----------SIVDHY--NIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNI 484

Query: 471 DQGETVSLVAHVDPEDMRGCISWWL---VMEDGFAAERKLSI-DISDDASDYKKFL--GH 524
           +  E ++L   V   D R     +L   +  D  A     SI +       YK ++    
Sbjct: 485 EHPERMTLFRMV-FLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 525 LSLDVLYSTLMDLVSLCG 542
              + L + ++D +    
Sbjct: 539 PKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 59/451 (13%), Positives = 115/451 (25%), Gaps = 141/451 (31%)

Query: 7   LPNEVLSDLSVSAATKLQCYRHLGIY---FKQSAKSLEQQIAKEARFYGALIRLQQNWKV 63
           +  +V          K+QC     I+    K    S E  +    +      ++  NW  
Sbjct: 166 VALDVCLSY------KVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLL---YQIDPNWTS 215

Query: 64  KRQRVAAPASGNEGFTI---DLFDNSLYDSAPVSRPSSLSTIRIDH--DSAGMLAINLPP 118
           +    +               L  +  Y        + L  + + +  ++    A NL  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPY-------ENCL--LVLLNVQNAKAWNAFNL-- 264

Query: 119 NSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDE-------CVREKHSL 171
            SC+        + +            + +         ++  DE        +  +   
Sbjct: 265 -SCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 172 L-REVHQ------AIFYEQVFDIVNR-------------EAFKQSLGV-NVTGIRENYLQ 210
           L REV        +I  E + D +                  + SL V      R+ + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 211 LGIGLGISIFL--SLIPSNQGDLSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSG 268
           L      S+F   + IP+    LS+  W +          D    V    +   + ++  
Sbjct: 378 L------SVFPPSAHIPTIL--LSL-IWFDVIKS------DVMVVVNKLHKYSLVEKQ-- 420

Query: 269 GYPNPLTYEIY-LQQVF----------HEYL---YGRAKNKPISTGTRVSGPPTKDGSGL 314
             P   T  I  +              H  +   Y   K            PP  D    
Sbjct: 421 --PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI----PPYLDQ--- 471

Query: 315 LGHFCLSLAH---------------RIF------SNKVHVELENAVCGVPYLHLV----- 348
             +F   + H                +F        K+  +          L+ +     
Sbjct: 472 --YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 349 -------SHPTWHSRTSSWTVFLKVPQSILH 372
                  + P +    ++   FL   +  L 
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	546
4h63_Q	469	Mediator of RNA polymerase II transcription subun;	99.77
4gwp_B	687	Mediator of RNA polymerase II transcription subun;	99.67

>4h63_Q Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.77  E-value=4e-18  Score=176.10  Aligned_cols=284  Identities=13%  Similarity=0.113  Sum_probs=166.3

Q ss_pred             CCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHhhcc-cceeeeeecccCCC-CCceEEEcc
Q 009013            6 ALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIRLQQN-WKVKRQRVAAPASG-NEGFTIDLF   83 (546)
Q Consensus         6 ~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiRLQqN-WKVKRQR~~a~~PG-neGF~~Dl~   83 (546)
                      +.|+....|.+|+...|++++++.+++||++|+.||+|++||.+||..++++++| |+|.|.|.... -| +-||.    
T Consensus        84 ~~p~~~~~~~~vs~GwKl~sL~~Aa~~lk~AA~rLe~ev~~E~kYW~~il~vr~~gW~l~r~r~~r~-lGVkyGf~----  158 (469)
T 4h63_Q           84 QPPESKESDATLAKCWKEKSLTSSCKFLFEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQGSNH-LSVQYSCL----  158 (469)
T ss_dssp             CCCCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECTTTCS-EEECCSCS----
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCcc-cccccCcC----
Confidence            4577778899999999999999999999999999999999999999999999998 99999885443 33 55553    


Q ss_pred             CCCCCCCCCccCCCCCeeeeeccCCCceeeeecCCCceeeEEEeeecccCCCCcccccccccCCCCCCCcccccCCCchh
Q 009013           84 DNSLYDSAPVSRPSSLSTIRIDHDSAGMLAINLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRPSKEAKESVNDDE  163 (546)
Q Consensus        84 d~s~~D~~~~~R~ssls~I~id~Ds~GmLav~vP~~~c~sL~~~f~g~~~~~~~k~~e~~~~~~~~~p~~~~~~s~~d~e  163 (546)
                      |..     +  |  .++.+|.+.|+..+.-...+....+.+++.... ..++.    ...+.  .+.+..      +++.
T Consensus       159 es~-----s--~--glA~lR~~~~~~~~~~~~~~~~~~~~lrV~I~~-~d~~~----~g~S~--~~~~~~------~~~~  216 (469)
T 4h63_Q          159 GGI-----S--L--GLGLIRMKPESKSFEVQSSLLYSQAALKISILN-KDRDE----IGSST--WSWPSQ------NCNS  216 (469)
T ss_dssp             CCS-----S--C--CCEEEEECTTTSCEEEECSCSCSCCEEEEEEEC-TTCCE----EEEEE--CCCCCC------CCSC
T ss_pred             CCC-----C--c--ceeeeecCCCCCceeeccCCCCCceEEEEEEEe-cCCce----eeeec--CCCCCC------CCcc
Confidence            322     1  3  678889888887777766677778888887654 11110    00111  111111      1111


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHhhhhhc-ccCcceeecccchhhhhccccceeEEEEeecCCCCCCccccccccccc
Q 009013          164 CVREKHSLLREVHQAIFYEQVFDIVNREAFK-QSLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGDLSVDSWVNQNVE  242 (546)
Q Consensus       164 ~vk~thslLR~ih~sIF~EQvFd~v~Reaf~-~s~g~nvtGi~E~~Lql~iGq~~sl~lsLv~s~q~~~~~~~~~~~~~~  242 (546)
                      .+   ..-|++-+..||+|.+|..++|||=. .+.||.|   +|+.+++.+++++.+.+.|++.+.+..+...+...+.+
T Consensus       217 ~i---~~~I~~AR~~IFEeELF~eL~REA~~L~s~gV~~---~~~~I~iel~~~~~i~ieLv~l~~~~~~~~~~~~~~~~  290 (469)
T 4h63_Q          217 VL---LKDIYKLQEILFEMDIWNSLLQEAQSCGNQGVNF---TGDEILVPISDDHVVRITLETSSKNTESGFTEDKKSNE  290 (469)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCEE---CSSEEEEECSTTCEEEEEEECCC---------------
T ss_pred             hH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEE---ecCEEEEEcCCCCEEEEEEecCCCccccccccCCCcch
Confidence            11   12244445569999999999999965 4556775   58999999999999999999988877555554444444


Q ss_pred             ccccccccCCCc-cchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCccccccccCCCCCCCCCCchhhhhhh
Q 009013          243 SGILPLDSHDGV-KLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKDGSGLLGHFCLS  321 (546)
Q Consensus       243 ~a~L~l~t~dg~-~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~~~g~~~sg~~~~d~~gLL~HFc~s  321 (546)
                      ++.....+.+.. ..++...+.         =.++-+-|-..+|.++.+|-..-+..+.+..+.+      -||--..--
T Consensus       291 d~~a~~~~~~~~~~~~~~l~~~---------i~sl~~LL~~~hr~n~~rr~~~p~p~~~~~~~~P------~LLRPIi~~  355 (469)
T 4h63_Q          291 DTSTNFVTIKQEKELLKCLCDT---------LNAIAHILFLKHCRKSDRRSQQPELYMAIDANAP------LILRPLIFY  355 (469)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHTCC-------CCSCC------STHHHHHHH
T ss_pred             hcccccccccchhhhHHHHHHH---------HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC------hhHHHHHHH
Confidence            432221111110 011000000         0123333444444455555444334444433332      277665555


Q ss_pred             hhhhhccchhhhhhhh
Q 009013          322 LAHRIFSNKVHVELEN  337 (546)
Q Consensus       322 laHRifS~KV~~eLE~  337 (546)
                      +.|+..-.....-|++
T Consensus       356 ~~~~~~~~~~~r~l~~  371 (469)
T 4h63_Q          356 YNLNQESLEFQRWLKQ  371 (469)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6776555555555553

>4gwp_B Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_B 3rj1_B

Probab=99.67  E-value=4.4e-16  Score=167.24  Aligned_cols=294  Identities=11%  Similarity=0.089  Sum_probs=191.1

Q ss_pred             CCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhhHHHHH-hhcccceeeeeecccCCCCCceEEEc
Q 009013            4 PKALPNEVLSDLSVSAATKLQCYRHLGIYFKQSAKSLEQQIAKEARFYGALIR-LQQNWKVKRQRVAAPASGNEGFTIDL   82 (546)
Q Consensus         4 PK~lPnE~lsDlAvsaAtKLq~yRhlg~YfKqSAKalEQQv~rEarFYGALiR-LQqNWKVKRQR~~a~~PGneGF~~Dl   82 (546)
                      |.+.+.+...+-+|+..-|++++++.+.+||++|+.||+||+||.+||..+++ ++.||++.|.|....++..-|+.|.+
T Consensus       262 p~~~~s~~~~~~~vs~GwKl~aL~~aa~~l~~AA~rLe~ev~~E~kYW~~il~v~~~~w~i~r~r~~~~~~~~lGVkyGf  341 (687)
T 4gwp_B          262 VAPTKKEYIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYGY  341 (687)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSCCCEEEESSCSSSSEEEECCC
T ss_pred             CCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCCCCCceeEEeccC
Confidence            33445566777789999999999999999999999999999999999999999 58899999999988888888888776


Q ss_pred             cCCCCCCCCCccC-CCCCeeeeeccCCCceeee----------ecCCCceeeEEEeeecccCCCCcccccccccCCCCCC
Q 009013           83 FDNSLYDSAPVSR-PSSLSTIRIDHDSAGMLAI----------NLPPNSCRSFRFGFLGVQSGDSSKQCSKVKNSCSPRP  151 (546)
Q Consensus        83 ~d~s~~D~~~~~R-~ssls~I~id~Ds~GmLav----------~vP~~~c~sL~~~f~g~~~~~~~k~~e~~~~~~~~~p  151 (546)
                      .|.     ++.|| ...++.+|.+.|+.++.-+          .++.+..+.+++..+.-..     .+......|...+
T Consensus       342 ~eS-----gs~Fr~drglA~LR~~~d~~~l~l~P~s~~~~~~~~~~~~~~k~lRVrI~~k~~-----~e~d~~lsG~S~~  411 (687)
T 4gwp_B          342 EDS-----GSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTDFVHSVKKFLRVRIFTKIE-----SEDDYILSGESVM  411 (687)
T ss_dssp             SCC-----SSCCCSSCCCEEEECTTSCEEEECSCC------CCCSSCSSCEECCCCEEEECT-----TSCSCCEEEECCC
T ss_pred             CCC-----chhhccccceeeeeccCCCCceeecccccccccccccccCCCceEEEEEEeecc-----CCCCceEeccccC
Confidence            554     57887 4799999999997655432          2344445555555443100     0000111133333


Q ss_pred             CcccccCCCchhhHHHHHHHHHHHHHHhhHHHHHHhHhhhhhcc-cCcceeecccchhhhhccccceeEEEEeecCCCCC
Q 009013          152 SKEAKESVNDDECVREKHSLLREVHQAIFYEQVFDIVNREAFKQ-SLGVNVTGIRENYLQLGIGLGISIFLSLIPSNQGD  230 (546)
Q Consensus       152 ~~~~~~s~~d~e~vk~thslLR~ih~sIF~EQvFd~v~Reaf~~-s~g~nvtGi~E~~Lql~iGq~~sl~lsLv~s~q~~  230 (546)
                      +.....+..+++++..   .|++.+..||+|++|..++|||=.. +.||.   ++++-..+-+.++..+-+.|++-+.+.
T Consensus       412 ~~~~~~~~~~~~~ie~---~I~~AR~~IFEEELF~eL~REAr~L~s~gV~---v~~~~i~i~~~~~~~i~ielv~ld~~~  485 (687)
T 4gwp_B          412 DRDSESEEAETKDIRK---QIQLLKKIIFEKELMYQIKKECALLISYGVS---IENENKVIIELPNEKFEIELLSLDDDS  485 (687)
T ss_dssp             CCSCSSCCCCTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCC---BTTTBCEEEETTTTEEEEECCTTCSEE
T ss_pred             CcccccccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCcee---EecCeeEEecCCCcEEEEEeccCCccc
Confidence            3333333345556655   4666678999999999999998554 44676   455667777788999999999765432


Q ss_pred             CcccccccccccccccccccCCCccchhhhhhhhhcCCCCCCCchhHHHHHHHHHHHhhhcccCCccccccccCCCCCCC
Q 009013          231 LSVDSWVNQNVESGILPLDSHDGVKLAEEKDDILRKSGGYPNPLTYEIYLQQVFHEYLYGRAKNKPISTGTRVSGPPTKD  310 (546)
Q Consensus       231 ~~~~~~~~~~~~~a~L~l~t~dg~~~~~~~~~~~~~~~~~pN~~s~eIYLqq~Fhe~i~~k~~ek~~~~g~~~sg~~~~d  310 (546)
                      .....+...+.++         .  .++.            -..++.+-|.++|..++-+|-.--+..+-+++    .. 
T Consensus       486 ~~~~~~~~s~~~d---------~--~A~l------------I~~~LrLLL~~~hr~nlrrR~~~p~~lt~~~~----~~-  537 (687)
T 4gwp_B          486 IVNHEQDLPKIND---------K--RANL------------MLVMLRLLLVVIFKKTLRSRISSPHGLINLNV----DD-  537 (687)
T ss_dssp             CCCCCCCCCCHHH---------H--HHHH------------HHHHHHHHHHHHHHHHHHHHHHSTTCCCSCCG----GG-
T ss_pred             cccccccCCCCCc---------H--HHHH------------HHHHHHHHHHHHHHHHHhccCCCCCcccCCCC----CC-
Confidence            1111100000000         0  0000            12355666666666666555443222222211    11 


Q ss_pred             CCCchhhhhhhhhhhhccchhhhhhhhhhcC
Q 009013          311 GSGLLGHFCLSLAHRIFSNKVHVELENAVCG  341 (546)
Q Consensus       311 ~~gLL~HFc~slaHRifS~KV~~eLE~vV~~  341 (546)
                      ..-||.=..--+.|+.+-..+...|.+.|..
T Consensus       538 ~~~LLRPil~~lrH~~~~~~l~~~l~~~v~~  568 (687)
T 4gwp_B          538 DILIIRPILGKVRFANYKLLLKKIIKDYVLD  568 (687)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2348877788889999888888888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00