Citrus Sinensis ID: 009036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540------
Protein Sequence
MEIQAVGTSSPKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHcccccccccccccccccccccccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHccHcHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcHHcHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHEEcHHHHHHcccccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
meiqavgtsspkrqkwkisfyrssssistkahqlqkpqtaeppgeflcpvsgslmadpvvvssghtFERACAHVCktlgftptlvdgttpdfstvipnLALKSTILNWchkqslnppkplefssAEKLVRASMESSQSKGKAMAVSEKELIrgvkekpsvsfnhavseltrrpayfyasssdesmgesskvstpplqlttrpscysssssssselepqtlnhpnsneqEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLalddqnktaigvlgalppllhllksdsertqhDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGnlascsdgrVAVLDSGGVECLVGMLrkgtelsestQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRaeeeeegvdwdelldsglvsrsrfrlgygrgestgnssef
Flexible Loop (DISEMBL)
meiqavgtsspkrqkwkISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMessqskgkamaVSEKElirgvkekpsvsfnhavseltrRPAYFYASssdesmgesskvstpplqlttrpSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISlrkltrsreetrvslctprLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKgtelsestQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKgraeeeeegvdwdelldsglvsrsrfrlgygrgestgnssef
Low Complexity Region (SEG)
MEIQAVGTSSPKRQKWKISFYRssssisTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAsssdesmgesskvsTPPLQLTTRPSCYssssssssELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPrlllalrsliisrYTnvqvnavaalvnlslEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVlgalppllhllKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAeeeeeGVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF
Disordered region (IsUnstruct)
*********************************************FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHK***************************************************************************************************************************************ALISLRKLT****ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK********DSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMR***************************************************************
Disordered Region (DISOPRED)
********************************************EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCH******************************************GVKEKPSVSFNHAVSELTRR***************************************************NSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK******************************************
Disordered Region (DISEMBL)
*************QKWKISFYRS******************PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAE********************EKELIRGVKEKPSVSFNHAVSELTRRPAYFYAS******************************************HPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG*********SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG*********DWDELLDSGLVSRSRFRLGYGR**********
Disordered Region (DISPRO)
**************************************TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPK*************************AVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVS*****LG*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIQAVGTSSPKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVxxxxxxxxxxxxxxxxxxxxxVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	546	2.2.26 [Sep-21-2011]
Q9FL17	550	U-box domain-containing p	yes	no	0.901	0.894	0.600	1e-166
Q9FJP6	556	U-box domain-containing p	no	no	0.915	0.899	0.500	1e-132
Q0WUF6	559	U-box domain-containing p	no	no	0.956	0.933	0.459	1e-120
Q9STT1	509	U-box domain-containing p	no	no	0.868	0.931	0.454	1e-106
Q5XEZ8	707	U-box domain-containing p	no	no	0.847	0.654	0.286	4e-44
O22193	826	U-box domain-containing p	no	no	0.498	0.329	0.307	6e-32
Q5VRH9	611	U-box domain-containing p	no	no	0.510	0.456	0.316	2e-30
Q8GUG9	612	U-box domain-containing p	no	no	0.494	0.441	0.311	1e-28
Q9SNC6	660	U-box domain-containing p	no	no	0.474	0.392	0.325	1e-28
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.496	0.390	0.338	3e-27

>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 310/516 (60%), Positives = 388/516 (75%), Gaps = 24/516 (4%)

Query: 37  PQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96
           P   E P EFLCP+SGSLMADP++VSSGH++ERAC   CKTLGFTPT      PDFSTVI
Sbjct: 53  PTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVI 108

Query: 97  PNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKE 156
           PNLALKS I +WC ++   PPKPL  ++AEKL+ A ME    + K ++VSEKELI+ +++
Sbjct: 109 PNLALKSAIHSWCERRCFPPPKPLNSAAAEKLILALMEKKPQRRK-VSVSEKELIQAIRD 167

Query: 157 KPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELE 216
           KPSV  NHA +EL RRP YF     + S  ES   S+  LQLTT+PSC+SS SS     E
Sbjct: 168 KPSVRLNHAATELDRRPNYF-----NSSSDESIASSSRTLQLTTKPSCFSSPSSG----E 218

Query: 217 PQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS 276
            ++L  PN   +E+  + KLKS ++ E+EEALIS+R++TR  E +R+SLCT R++ AL+S
Sbjct: 219 IESL-EPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKS 277

Query: 277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336
           LI+SRY  VQVN  A LVNLSLEK NK+ IVRSG+VPP++DVL  GS EAQEH+ G IFS
Sbjct: 278 LIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFS 337

Query: 337 LALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA 396
           LAL+D+NKTAIGVLG L PLLHL++  +E T+HDSALALYHLSLV+SNR KLVKLG+V  
Sbjct: 338 LALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQM 397

Query: 397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456
           LLGMV+ G M GRVLLIL N+ASC   R A+LDSGGVEC+VG+LR+  E++EST+ESCV+
Sbjct: 398 LLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVA 457

Query: 457 VLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE----EE 511
           VLY LSH GGLRFKGLA AA   E L+++ER G E  K+KA+R+LE+++ + E+    E 
Sbjct: 458 VLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVEN 517

Query: 512 EGVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 546
           E +DW+ELL+SG VSRSR RLG   GE S  NS+EF
Sbjct: 518 EEIDWEELLNSGDVSRSRCRLG---GEKSCVNSAEF 550

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/529 (50%), Positives = 356/529 (67%), Gaps = 29/529 (5%)

Query: 42  PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDG--TTPDFSTVIPNL 99
           PP EFLCP+S S+M+DPVVVSSG TFER C  VC+ L F P L D   + PDFS +IPNL
Sbjct: 33  PPVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRDLNFIPKLNDDEESLPDFSNIIPNL 92

Query: 100 ALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKEKPS 159
            +KSTI  WC    ++ P+P ++S+ E+++R  M     +   + VSE+EL+R V  +  
Sbjct: 93  NMKSTIDTWCDTVGVSRPQPPDYSTVERILRQQMPPPDVE---IRVSEQELLRAVAHRAP 149

Query: 160 VSFNHAVSELT-RRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQ 218
           +  +HA SEL  RR      +SSDES+  +    TP L LTTRP+C+S S SSSS  E +
Sbjct: 150 MIIHHADSELMGRRDFNNSTTSSDESVIVAHSPFTP-LPLTTRPACFSPSPSSSSS-EIE 207

Query: 219 TLNH--------PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRL 270
           TL H          + E+++    KLKS ++ + E+ LI +RK+TR+ +E RVSLC+PR+
Sbjct: 208 TLTHHTFFSNSTSTATEEDEVIYNKLKSSEIFDQEQGLIMMRKMTRTNDEARVSLCSPRI 267

Query: 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHA 330
           L  L+++I+SRY+ VQ NA+A+LVNLSL+K NK+ IVR G VP ++DVL +GS EAQEHA
Sbjct: 268 LSLLKNMIVSRYSLVQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVLKSGSREAQEHA 327

Query: 331 CGAIFSLALDDQNKTAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKLV 389
            G IFSL+L+D NK  IGVLGAL PLLH L+ ++S+RT+HDSALALYHL+L ++NR+KLV
Sbjct: 328 AGTIFSLSLEDDNKMPIGVLGALQPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLV 387

Query: 390 KLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLR-----KGT 444
           +LG+V AL  MV SG    R LL++ NLA CS+GR A+LD+  V  LVG LR     + T
Sbjct: 388 RLGAVPALFSMVRSGESASRALLVICNLACCSEGRSAMLDANAVAILVGKLREEWTEEPT 447

Query: 445 EL--SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502
           E   S S +E+CV+ L+ALSH  LRFKGLA  A   EVL  +E  G+E  +EKAK++L+L
Sbjct: 448 EARSSSSARENCVAALFALSHESLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQL 507

Query: 503 MKGRAEEEEE-----GVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF 546
           M+ R  E++E      +DWD ++DS    RSRFR+G      T NSS F
Sbjct: 508 MRERVPEDDEEDGEGSIDWDRVIDSNGSIRSRFRVGGRNRVVTQNSSGF 556

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0WUF6|PUB41_ARATH U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41 PE=2 SV=1

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 254/553 (45%), Positives = 350/553 (63%), Gaps = 31/553 (5%)

Query: 12  KRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERAC 71
            +Q+W  SF++ SSS +T    L + +  E P EFLCP++G LM+DPVVVSSG TFER  
Sbjct: 4   NKQRW-FSFHQRSSSATTTT--LPQHKHDETPPEFLCPITGFLMSDPVVVSSGQTFERLS 60

Query: 72  AHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRA 131
             VC+ LG+ P L+DGT PD STVIPNLA+KSTI +WC +Q ++ P+P + +  E +VRA
Sbjct: 61  VQVCRNLGYIPDLLDGTRPDLSTVIPNLAMKSTIFSWCDRQKVDHPRPPDAAYVEGVVRA 120

Query: 132 SMESS------QSKGKAMAVSEKELIRGVKEKPSVSFNHAVSEL-TRRPAYFYASSSDES 184
            M+        QS G      E E++  V+E     ++  +  +  R       ++S ES
Sbjct: 121 RMDKDPNPSPGQSPGPGDKDPEPEILPPVEENSPSDYDAVMEAIRARSKNSMSPTTSLES 180

Query: 185 --MGESSKVSTPPLQLTTRPSCYSSSSSSSSELEP----------QTLNHPNSNEQEDYF 232
             +G+SS      + + +  +  SSS   +    P             + P S E+E+ F
Sbjct: 181 VTIGQSSYHPVRAVSMFSSSTTSSSSGVFAGADSPFRNAMSFSSTDHSSSPMSPEEEEIF 240

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
             KL+   + + E+ LI LRK+TRS E+ RVSLCT R+L  LRSL++SRY  VQ NA A+
Sbjct: 241 -NKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDRILSFLRSLLVSRYNLVQTNAAAS 299

Query: 293 LVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGA 352
           +VNLSLEK NK+ IVRSG VP ++DVL +G+ EAQEH  GA+FSLAL+D+NK  IGVLGA
Sbjct: 300 VVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGA 359

Query: 353 LPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVL 411
           + PLLH L+ S+SER + D+ALALYHLSL+ SNRT+LV+ G+V  LL MV SG  T R+L
Sbjct: 360 VEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMVRSGDSTSRIL 419

Query: 412 LILGNLASCSDGRVAVLDSGGVECLVGMLRK-GTELSESTQESCVSVLYALSHGGLRFKG 470
           L+L NLA+C DG+ A+LD   V  LVG LR+ G   SE+ +E+CV+VL  L  G LRF+G
Sbjct: 420 LVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQGNLRFRG 479

Query: 471 LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK------GRAEEEEEGVDWDELLDSGL 524
           LA+ AG  EVLM +E  G+E VKEKA ++L  M+          E  E  +W+ +L++  
Sbjct: 480 LASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESEFGENAEAREWNRMLEATG 539

Query: 525 VSRSRFRLGYGRG 537
           +SR++F+ G   G
Sbjct: 540 LSRTQFQGGQNGG 552

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39 PE=2 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/510 (45%), Positives = 319/510 (62%), Gaps = 36/510 (7%)

Query: 35  QKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94
           Q     E P EFLCP++G LM+DPVVV+SG TFER    VC+ L F P L DGT PD ST
Sbjct: 3   QHNSPGETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLST 62

Query: 95  VIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGV 154
           VIPNLA+KSTIL+WC +  +  P+P +++  E +VR  M+S    G    +++ E++  V
Sbjct: 63  VIPNLAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDS-LPPGSGHRIAKSEILPPV 121

Query: 155 KEKPSVSFNHAVSELTRRPAYFYASSSDESMG--------ESSKVSTPPLQLTTRPSCYS 206
            E  + + ++                 D  MG          S  ++ PL   TRP  +S
Sbjct: 122 AENSNSNSDY-----------------DSVMGAIRSRSRTSLSSTTSLPLH-QTRPINHS 163

Query: 207 SSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC 266
           +   SS      +   P S E+E+ +  KL S    + E+ LI LRK TRS E TR+SLC
Sbjct: 164 TRIQSSFSTSDYSSFPPMSPEEEEIY-NKLTSVDTIDHEQGLIQLRKTTRSNETTRISLC 222

Query: 267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEA 326
           T R+L  LRSLI+SRY  VQ NA A++VNLSLEK NK+ IVRSG VP ++DVL +GS EA
Sbjct: 223 TDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEA 282

Query: 327 QEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNR 385
           QEH  GA+FSLA++++NK  IGVLGA+ PLLH L+ S+SER + D+ALALYHLSL+ +NR
Sbjct: 283 QEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNR 342

Query: 386 TKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK--G 443
           ++LVK G+V  +L M+ SG    R+LL+L NLA+CS+G+ A+LD   V  LVG LR+  G
Sbjct: 343 SRLVKAGAVPMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGG 402

Query: 444 TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLE 501
            E   + +E+CV  L  LS G +RF+GLA+ AG  E+L  +     GS  +KEKA ++L+
Sbjct: 403 AESDAAARENCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASKILQ 462

Query: 502 LMKGRAEEEEEGV---DWDELLDSGLVSRS 528
            ++G   E  EG    +W+ +L++  +SRS
Sbjct: 463 TLRGGGSEFGEGAEAREWNRMLEASGLSRS 492

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  179 bits (455), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 143/499 (28%), Positives = 249/499 (49%), Gaps = 36/499 (7%)

Query: 26  SISTKAHQ----LQKPQTAEP---PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL 78
           S++T+ H+    +++ Q   P   P +F C +S  LM DPV+V+SG TFER        +
Sbjct: 217 SLTTQMHEYLSDIKQAQLRCPVRVPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDM 276

Query: 79  GFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEK----LVRASME 134
           G             +T+ PN  +++ + +WC   ++ PP PLE   + +    LV +   
Sbjct: 277 GLMVCPKTRQALSHTTLTPNFIVRAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRA 336

Query: 135 SSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTP 194
           SS   G + ++  +EL R V  + S S    VSE+  +      +++D S+  S+     
Sbjct: 337 SSSENGHSESLDAEEL-RQVFSR-SASAPGIVSEVVCKTKRNNNAAADRSLTRSNTPWKF 394

Query: 195 PLQLTTR------PSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEAL 248
           P +   R       +   + SSSS E E + L            +  LKS  +    EA 
Sbjct: 395 PEERHWRHPGIIPATVRETGSSSSIETEVKKL------------IDDLKSSSLDTQREAT 442

Query: 249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308
             +R L R+  + R+ +     + +L SL+ S    +Q +AV  L+NLS+   NK LI  
Sbjct: 443 ARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAE 502

Query: 309 SGLVPPIVDVLMAGS-AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERT 367
           SG + P++ VL  G   EA+ ++   +FSL++ ++ KT IG  GA+ PL+ LL S S   
Sbjct: 503 SGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSG 562

Query: 368 QHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLASCSDGRVA 426
           + D+A AL++LS+   N+TK+++ G+V  L+ +++    M  + +++L NLA+  +G++A
Sbjct: 563 KKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIA 622

Query: 427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER 486
           + + GG+  LV ++  G   S   +E+  + L  L     +F       G+   L+ + +
Sbjct: 623 IGEEGGIPVLVEVVELG---SARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTK 679

Query: 487 VGSEHVKEKAKRMLELMKG 505
            G+   KEKA+ +L+  K 
Sbjct: 680 SGTARGKEKAQNLLKYFKA 698

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score =  139 bits (350), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 153/276 (55%), Gaps = 4/276 (1%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            V++LKS  +    +A   LR L +   + R+ +     ++ L  L+ S  +  Q NAV 
Sbjct: 546 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVT 605

Query: 292 ALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG 351
           AL+NLS+   NK  I  +G + P++ VL  GS+EA+E++   +FSL++ ++NK  IG  G
Sbjct: 606 ALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSG 665

Query: 352 ALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN-SGHMTGRV 410
           A+ PL+ LL + + R + D+A AL++LS+ + N+  +V+ G+V  L+ +++ +  M  + 
Sbjct: 666 AIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKA 725

Query: 411 LLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKG 470
           + +L NLA+  +GR A+   GG+  LV ++  G   S   +E+  + L  LS    RF  
Sbjct: 726 VAVLANLATIPEGRNAIGQEGGIPLLVEVVELG---SARGKENAAAALLQLSTNSGRFCN 782

Query: 471 LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506
           +    G    L+ + + G+   +EKA+ +L   + +
Sbjct: 783 MVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 818

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 149/284 (52%), Gaps = 5/284 (1%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            + +L+S    E   A   +R L +     R+ +     +  L +L+ S     Q +AV 
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387

Query: 292 ALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG 351
           AL+NLS+ + NK  IV S  +P IV+VL  GS E +E+A   +FSL++ D+NK  IG  G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447

Query: 352 ALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV--NSGHMTGR 409
           A+PPL++LL   S R + D+A A+++L + + N+ + VK G V  L+  +   +G M   
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507

Query: 410 VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFK 469
            L +L  LA   +G++ +  S  +  LV +++ G   S   +E+  ++L+ L        
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTG---SPRNRENAAAILWLLCSADTEQT 564

Query: 470 GLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEG 513
             A AAG+ + L  +   G++  K KA  +LELM    E+  +G
Sbjct: 565 LAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANEDSLKG 608

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            VQ+L S    +   A+  +R L++   + R+ +     +  L +L+ S     Q NA+ 
Sbjct: 336 LVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAIT 395

Query: 292 ALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG 351
            ++NLS+ + NK LI+ +G V  IV VL AG+ EA+E+A   +FSL+L D+NK  IG  G
Sbjct: 396 CVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSG 455

Query: 352 ALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTG 408
           A+P L+ LL++ + R + D+A AL++L +   N+ + V+ G V AL+ M++      M  
Sbjct: 456 AIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVD 515

Query: 409 RVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRF 468
             L IL  LA+  D + A++ +  +  L+G+L+         +E+  ++L +L       
Sbjct: 516 EALTILSVLANNQDAKSAIVKANTLPALIGILQTD---QTRNRENAAAILLSLCKRDTEK 572

Query: 469 KGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504
                  G    LM + + G+E  K KA  +LEL++
Sbjct: 573 LITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 145/264 (54%), Gaps = 5/264 (1%)

Query: 251 LRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG 310
           +R L +   + RV++     +  L  L+ +  + +Q ++V AL+NLS+ + NK  IV +G
Sbjct: 376 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAG 435

Query: 311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHD 370
            +P IV VL  GS EA+E+A   +FSL++ D+NK  IG LGA+PPL+ LL   ++R + D
Sbjct: 436 AIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKD 495

Query: 371 SALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVL 428
           +A AL++L + + N+ K ++ G +  L  ++      M    L IL  L+S  +G+  + 
Sbjct: 496 AATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIG 555

Query: 429 DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488
            S  V  LV  +R G   S   +E+  +VL  L  G  +    A   G+   L+ +   G
Sbjct: 556 SSDAVPSLVEFIRTG---SPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNG 612

Query: 489 SEHVKEKAKRMLELMKGRAEEEEE 512
           ++  K KA ++LE +   AE+++E
Sbjct: 613 TDRGKRKAAQLLERISRLAEQQKE 636

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 147/278 (52%), Gaps = 7/278 (2%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
           D  + KL SP   E   A   LR L +     R+ +     +  L SL+ S     Q +A
Sbjct: 370 DALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHA 429

Query: 290 VAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349
           V AL+NLS+ + NK  I+ SG VP IV VL  GS EA+E+A   +FSL++ D+ K  IG 
Sbjct: 430 VTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN--SGHMT 407
           +GA+P L+ LL   S+R + D+A AL++L + + N+ + ++ G V  ++G+V   +G + 
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALM 549

Query: 408 GRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR 467
              + IL  L+S  +G+ A+  +  V  LV M+  GT      +E+  +V+  L  G   
Sbjct: 550 DEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGT---PRNRENAAAVMLHLCSGEHH 606

Query: 468 FKGLAAA--AGMAEVLMRMERVGSEHVKEKAKRMLELM 503
              LA A   G+   L  +   G++  K KA ++LE M
Sbjct: 607 LVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
225452564	519	PREDICTED: U-box domain-containing prote	0.939	0.988	0.639	0.0
449449182	554	PREDICTED: U-box domain-containing prote	0.950	0.936	0.623	1e-166
449492666	554	PREDICTED: U-box domain-containing prote	0.950	0.936	0.621	1e-166
147852951	543	hypothetical protein VITISV_006142 [Viti	0.842	0.847	0.650	1e-165
10177501	540	unnamed protein product [Arabidopsis tha	0.901	0.911	0.600	1e-164
15242579	550	armadillo/beta-catenin repeat and RING/U	0.901	0.894	0.600	1e-164
296087722	683	unnamed protein product [Vitis vinifera]	0.844	0.674	0.605	1e-163
297805680	548	armadillo/beta-catenin repeat family pro	0.935	0.932	0.577	1e-162
356550235	557	PREDICTED: U-box domain-containing prote	0.934	0.915	0.563	1e-161
225457140	523	PREDICTED: U-box domain-containing prote	0.917	0.957	0.579	1e-152

>gi|225452564|ref|XP_002280597.1| PREDICTED: U-box domain-containing protein 40 [Vitis vinifera]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/536 (63%), Positives = 426/536 (79%), Gaps = 23/536 (4%)

Query: 13  RQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
           +Q+W++ FY+SSSS +       K Q+ EPP EFLCP+SGSLMADPV+VSSG TFERAC 
Sbjct: 5   KQRWRV-FYKSSSSSNA-----SKRQSKEPPKEFLCPISGSLMADPVIVSSGQTFERACV 58

Query: 73  HVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 132
            VCK LGF PTL +G++PDFST+IPNLA++STIL+WC K S++ PKPL+F SAEK+VR  
Sbjct: 59  QVCKALGFNPTLSEGSSPDFSTIIPNLAIQSTILSWCDKCSVDRPKPLDFDSAEKVVRTL 118

Query: 133 MESSQSKGKAMAVSEKELIRGVKEKPSV-SFNHAVSELTRRPAYFYASSSDESMGESSKV 191
           M S +++ K+   S+KELI+ V E P V  F HA+++L RR  +FY SSS ES+  ++  
Sbjct: 119 MASQKAENKSED-SDKELIKAVGETPPVLKFAHAITDLNRRSTHFY-SSSQESV--TTTG 174

Query: 192 STPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISL 251
           STPPL L TRPSCYSSSSSS    E +TLN P+S E+++  + KLKSPQV E EEAL+SL
Sbjct: 175 STPPLPLATRPSCYSSSSSS----EIETLN-PDSPEEDEGIIAKLKSPQVFEQEEALVSL 229

Query: 252 RKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGL 311
           RK+TR+ EETRVSLC+PRLL  LRSLIISRY+ +QVNAVA LVNLSLEKINK+ IVRSG+
Sbjct: 230 RKITRTGEETRVSLCSPRLLSMLRSLIISRYSGIQVNAVAVLVNLSLEKINKVKIVRSGI 289

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDS 371
           VPP++DVL  G  EAQ+HA GA+FSLAL+D NKTAIGVLGALPPLLH L+S+SER ++DS
Sbjct: 290 VPPLIDVLKGGFPEAQDHAAGALFSLALEDANKTAIGVLGALPPLLHTLRSESERARNDS 349

Query: 372 ALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSG 431
           ALALYHLSLV+SNRTKLVKLG+V  L+GMVNSGH+  R LL+L NLA+C DGR A+LD+G
Sbjct: 350 ALALYHLSLVQSNRTKLVKLGAVQILMGMVNSGHLWSRALLVLCNLAACPDGRTAMLDAG 409

Query: 432 GVECLVGMLRKGTEL-SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSE 490
            VECLVG+LR G EL S+S +ESC++ LYALS GG RFKGLA  AG  E LMR+E++GSE
Sbjct: 410 AVECLVGLLR-GNELDSDSIRESCLAALYALSFGGSRFKGLAKEAGAMETLMRVEKIGSE 468

Query: 491 HVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSRFRLGYGRGESTGNSSEF 546
             +EKAK++LE+M+   E+ EEG+DW+ LLDSGLVSR+R+     R  S+ NSSEF
Sbjct: 469 RAREKAKKILEIMR---EKTEEGLDWEALLDSGLVSRTRYWPLQDR--SSVNSSEF 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449182|ref|XP_004142344.1| PREDICTED: U-box domain-containing protein 40-like [Cucumis sativus]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 336/539 (62%), Positives = 405/539 (75%), Gaps = 20/539 (3%)

Query: 9   SSPKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFE 68
           SS  R+KW+I F RSSSS      +       E P E LCP++GSLMADPV+VSSGHTFE
Sbjct: 35  SSTPRRKWRI-FNRSSSSPFPSKPKPP--HFKEIPKELLCPITGSLMADPVIVSSGHTFE 91

Query: 69  RACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKL 128
            AC  VCK LG  PTL+DG+ PDFS+VIPNLALKSTI NWC   S  PP+PL+FSSAEKL
Sbjct: 92  AACVQVCKDLGVKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPQPLDFSSAEKL 151

Query: 129 VRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGES 188
           VR  + ++ SK      S++ELI+GV E P V FNHA +E+ RR ++F++SS +     S
Sbjct: 152 VRKFV-AAHSK------SDEELIQGVAETPVVRFNHAATEVARRSSHFHSSSDESV---S 201

Query: 189 SKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEAL 248
           + V T PL L  RPSC SSSSSS +E+   TLN P    +E+  V KLKS QV E+EEA+
Sbjct: 202 AVVPTLPLPLAIRPSCCSSSSSSDNEI-IGTLNLP----EEEEIVVKLKSSQVIEIEEAV 256

Query: 249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308
            +LRK+TR+RE++RV LC+P +L ALRSLI+SRY+ VQVN+VAALVNLSLE +NK+ IVR
Sbjct: 257 TTLRKITRTREDSRVHLCSPMILSALRSLIVSRYSGVQVNSVAALVNLSLENLNKVKIVR 316

Query: 309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ 368
           SG++P ++DVL  GS E QEHA GAIFSLAL+D NKTAIGVLGALPPL+ LL S+SE+T+
Sbjct: 317 SGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDNNKTAIGVLGALPPLIRLLLSNSEQTR 376

Query: 369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL 428
           HDSALALYHLS V+SNR+KLVKLGSV  LLGMV S HM GR+LL L NLA+C +GR A+L
Sbjct: 377 HDSALALYHLSHVQSNRSKLVKLGSVPILLGMVKSRHMAGRILLTLCNLAACFEGRAALL 436

Query: 429 DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488
           DSG VECLVGMLR+    SEST+ESCV+VL+ LS GGLRFKGLA  AG  +V M +E+ G
Sbjct: 437 DSGAVECLVGMLRENELDSESTRESCVAVLFGLSFGGLRFKGLAKTAGAMDVFMAVEKNG 496

Query: 489 SEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLV-SRSRFRLGYGRGESTGNSSEF 546
           SE  KEK KRM+E MK R +EE E V+W+ELLDSG   SRSR RLG G   ST NSSEF
Sbjct: 497 SERSKEKVKRMMEYMKAR-DEEAEDVNWEELLDSGCFGSRSRCRLGAGMDRSTANSSEF 554

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492666|ref|XP_004159066.1| PREDICTED: U-box domain-containing protein 40-like [Cucumis sativus]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 335/539 (62%), Positives = 404/539 (74%), Gaps = 20/539 (3%)

Query: 9   SSPKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFE 68
           SS  R+KW+I F RSSSS      +       E P E LCP++GSLMADPV+VSSGHTFE
Sbjct: 35  SSTPRRKWRI-FNRSSSSPFPSKPKPP--HFKEIPKELLCPITGSLMADPVIVSSGHTFE 91

Query: 69  RACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKL 128
            AC  VCK LG  PTL+DG+ PDFS+VIPNLALKSTI NWC   S  PP+PL+FSSAEKL
Sbjct: 92  AACVQVCKDLGVKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPQPLDFSSAEKL 151

Query: 129 VRASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGES 188
           VR  + ++ SK      S++ELI+GV E P   FNHA +E+ RR ++F++SS +     S
Sbjct: 152 VRKFV-AAHSK------SDEELIQGVAETPVARFNHAATEVARRSSHFHSSSDESV---S 201

Query: 189 SKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEAL 248
           + V T PL L  RPSC SSSSSS +E+   TLN P    +E+  V KLKS QV E+EEA+
Sbjct: 202 AVVPTLPLPLAIRPSCCSSSSSSDNEI-IGTLNLP----EEEEIVVKLKSSQVIEIEEAV 256

Query: 249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308
            +LRK+TR+RE++RV LC+P +L ALRSLI+SRY+ VQVN+VAALVNLSLE +NK+ IVR
Sbjct: 257 TTLRKITRTREDSRVHLCSPMILSALRSLIVSRYSGVQVNSVAALVNLSLENLNKVKIVR 316

Query: 309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ 368
           SG++P ++DVL  GS E QEHA GAIFSLAL+D NKTAIGVLGALPPL+ LL S+SE+T+
Sbjct: 317 SGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDNNKTAIGVLGALPPLIRLLLSNSEQTR 376

Query: 369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL 428
           HDSALALYHLS V+SNR+KLVKLGSV  LLGMV S HM GR+LL L NLA+C +GR A+L
Sbjct: 377 HDSALALYHLSHVQSNRSKLVKLGSVPILLGMVKSRHMAGRILLTLCNLAACFEGRAALL 436

Query: 429 DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488
           DSG VECLVGMLR+    SEST+ESCV+VL+ LS GGLRFKGLA  AG  +V M +E+ G
Sbjct: 437 DSGAVECLVGMLRENELDSESTRESCVAVLFGLSFGGLRFKGLAKTAGAMDVFMAVEKNG 496

Query: 489 SEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLV-SRSRFRLGYGRGESTGNSSEF 546
           SE  KEK KRM+E MK R +EE E V+W+ELLDSG   SRSR RLG G   ST NSSEF
Sbjct: 497 SERSKEKVKRMMEYMKAR-DEEAEDVNWEELLDSGCFGSRSRCRLGAGMDRSTANSSEF 554

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852951|emb|CAN81267.1| hypothetical protein VITISV_006142 [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 311/478 (65%), Positives = 383/478 (80%), Gaps = 18/478 (3%)

Query: 13  RQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
           +Q+W++ FY+SSSS +       K Q+ EPP EFLCP+SGSLMADPV+VSSG TFERAC 
Sbjct: 33  KQRWRV-FYKSSSSSNA-----SKRQSKEPPKEFLCPISGSLMADPVIVSSGQTFERACV 86

Query: 73  HVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 132
            VCK LGF PTL +G++PDFST+IPNLA++STIL+WC K S++ PKPL+F SAEK+VR  
Sbjct: 87  QVCKALGFNPTLSEGSSPDFSTIIPNLAIQSTILSWCDKCSVDRPKPLDFDSAEKVVRTL 146

Query: 133 MESSQSKGKAMAVSEKELIRGVKEKPSV-SFNHAVSELTRRPAYFYASSSDESMGESSKV 191
           M S +++ K+   S+KELI+ V E P V  F HA+++L RR  +FY SSS ES+  ++  
Sbjct: 147 MASQKAENKSED-SDKELIKAVXETPPVLKFAHAITDLNRRSTHFY-SSSQESV--TTTG 202

Query: 192 STPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISL 251
           STPPL L TRPSCYSSSSSS    E +TLN P+S E+++  + KLKSPQV E EEAL+SL
Sbjct: 203 STPPLPLATRPSCYSSSSSS----EIETLN-PDSPEEDEGIIAKLKSPQVFEQEEALVSL 257

Query: 252 RKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGL 311
           RK+TR+ EETRVSLC+PRLL  LRSLIISRY+ +QVNAVA LVNLSLEKINK+ IVRSG+
Sbjct: 258 RKITRTGEETRVSLCSPRLLSMLRSLIISRYSGIQVNAVAVLVNLSLEKINKVKIVRSGI 317

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDS 371
           VPP++DVL  G  EAQ+HA GA+FSLAL+D NKTAIGVLGALPPLLH L+S+SER ++DS
Sbjct: 318 VPPLIDVLKGGFPEAQDHAAGALFSLALEDANKTAIGVLGALPPLLHTLRSESERARNDS 377

Query: 372 ALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSG 431
           ALALYHLSLV+SNRTKLVKLG+V  L+GMVNSGH+  R LL+L NLA+C DGR A+LD+G
Sbjct: 378 ALALYHLSLVQSNRTKLVKLGAVQILMGMVNSGHLWSRALLVLCNLAACPDGRTAMLDAG 437

Query: 432 GVECLVGMLRKGTEL-SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG 488
            VECLVG+LR G EL S+S +ESC++ LYALS GG RFKGLA  AG  E LMR+E++G
Sbjct: 438 AVECLVGLLR-GNELDSDSIRESCLAALYALSFGGSRFKGLAKEAGAMETLMRVEKIG 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177501|dbj|BAB10895.1| unnamed protein product [Arabidopsis thaliana]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/516 (60%), Positives = 388/516 (75%), Gaps = 24/516 (4%)

Query: 37  PQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96
           P   E P EFLCP+SGSLMADP++VSSGH++ERAC   CKTLGFTPT      PDFSTVI
Sbjct: 43  PTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVI 98

Query: 97  PNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKE 156
           PNLALKS I +WC ++   PPKPL  ++AEKL+ A ME    + K ++VSEKELI+ +++
Sbjct: 99  PNLALKSAIHSWCERRCFPPPKPLNSAAAEKLILALMEKKPQRRK-VSVSEKELIQAIRD 157

Query: 157 KPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELE 216
           KPSV  NHA +EL RRP YF     + S  ES   S+  LQLTT+PSC+SS SS     E
Sbjct: 158 KPSVRLNHAATELDRRPNYF-----NSSSDESIASSSRTLQLTTKPSCFSSPSSG----E 208

Query: 217 PQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS 276
            ++L  PN   +E+  + KLKS ++ E+EEALIS+R++TR  E +R+SLCT R++ AL+S
Sbjct: 209 IESL-EPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKS 267

Query: 277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336
           LI+SRY  VQVN  A LVNLSLEK NK+ IVRSG+VPP++DVL  GS EAQEH+ G IFS
Sbjct: 268 LIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFS 327

Query: 337 LALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA 396
           LAL+D+NKTAIGVLG L PLLHL++  +E T+HDSALALYHLSLV+SNR KLVKLG+V  
Sbjct: 328 LALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQM 387

Query: 397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456
           LLGMV+ G M GRVLLIL N+ASC   R A+LDSGGVEC+VG+LR+  E++EST+ESCV+
Sbjct: 388 LLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVA 447

Query: 457 VLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE----EE 511
           VLY LSH GGLRFKGLA AA   E L+++ER G E  K+KA+R+LE+++ + E+    E 
Sbjct: 448 VLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVEN 507

Query: 512 EGVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 546
           E +DW+ELL+SG VSRSR RLG   GE S  NS+EF
Sbjct: 508 EEIDWEELLNSGDVSRSRCRLG---GEKSCVNSAEF 540

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242579|ref|NP_198830.1| armadillo/beta-catenin repeat and RING/U-box domain-containing protein [Arabidopsis thaliana] gi|334302849|sp|Q9FL17.2|PUB40_ARATH RecName: Full=U-box domain-containing protein 40; AltName: Full=Plant U-box protein 40 gi|332007129|gb|AED94512.1| armadillo/beta-catenin repeat and RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/516 (60%), Positives = 388/516 (75%), Gaps = 24/516 (4%)

Query: 37  PQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96
           P   E P EFLCP+SGSLMADP++VSSGH++ERAC   CKTLGFTPT      PDFSTVI
Sbjct: 53  PTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVI 108

Query: 97  PNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKE 156
           PNLALKS I +WC ++   PPKPL  ++AEKL+ A ME    + K ++VSEKELI+ +++
Sbjct: 109 PNLALKSAIHSWCERRCFPPPKPLNSAAAEKLILALMEKKPQRRK-VSVSEKELIQAIRD 167

Query: 157 KPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELE 216
           KPSV  NHA +EL RRP YF     + S  ES   S+  LQLTT+PSC+SS SS     E
Sbjct: 168 KPSVRLNHAATELDRRPNYF-----NSSSDESIASSSRTLQLTTKPSCFSSPSSG----E 218

Query: 217 PQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS 276
            ++L  PN   +E+  + KLKS ++ E+EEALIS+R++TR  E +R+SLCT R++ AL+S
Sbjct: 219 IESL-EPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKS 277

Query: 277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336
           LI+SRY  VQVN  A LVNLSLEK NK+ IVRSG+VPP++DVL  GS EAQEH+ G IFS
Sbjct: 278 LIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFS 337

Query: 337 LALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA 396
           LAL+D+NKTAIGVLG L PLLHL++  +E T+HDSALALYHLSLV+SNR KLVKLG+V  
Sbjct: 338 LALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQM 397

Query: 397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456
           LLGMV+ G M GRVLLIL N+ASC   R A+LDSGGVEC+VG+LR+  E++EST+ESCV+
Sbjct: 398 LLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVA 457

Query: 457 VLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE----EE 511
           VLY LSH GGLRFKGLA AA   E L+++ER G E  K+KA+R+LE+++ + E+    E 
Sbjct: 458 VLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVEN 517

Query: 512 EGVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 546
           E +DW+ELL+SG VSRSR RLG   GE S  NS+EF
Sbjct: 518 EEIDWEELLNSGDVSRSRCRLG---GEKSCVNSAEF 550

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087722|emb|CBI34978.3| unnamed protein product [Vitis vinifera]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 314/519 (60%), Positives = 391/519 (75%), Gaps = 58/519 (11%)

Query: 13  RQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
           +Q+W++ FY+SSSS +       K Q+ EPP EFLCP+SGSLMADPV+VSSG TFERAC 
Sbjct: 5   KQRWRV-FYKSSSSSNA-----SKRQSKEPPKEFLCPISGSLMADPVIVSSGQTFERACV 58

Query: 73  HVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 132
            VCK LGF PTL +G++PDFST+IPNLA++STIL+WC K S++ PKPL+F SAEK+VR  
Sbjct: 59  QVCKALGFNPTLSEGSSPDFSTIIPNLAIQSTILSWCDKCSVDRPKPLDFDSAEKVVRTL 118

Query: 133 MESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVS 192
           M S +++ K+   S+KELI+ V E                                    
Sbjct: 119 MASQKAENKSED-SDKELIKAVGE------------------------------------ 141

Query: 193 TPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLR 252
           TPP+      +CYSSSSSS    E +TLN P+S E+++  + KLKSPQV E EEAL+SLR
Sbjct: 142 TPPVL-----NCYSSSSSS----EIETLN-PDSPEEDEGIIAKLKSPQVFEQEEALVSLR 191

Query: 253 KLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLV 312
           K+TR+ EETRVSLC+PRLL  LRSLIISRY+ +QVNAVA LVNLSLEKINK+ IVRSG+V
Sbjct: 192 KITRTGEETRVSLCSPRLLSMLRSLIISRYSGIQVNAVAVLVNLSLEKINKVKIVRSGIV 251

Query: 313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSA 372
           PP++DVL  G  EAQ+HA GA+FSLAL+D NKTAIGVLGALPPLLH L+S+SER ++DSA
Sbjct: 252 PPLIDVLKGGFPEAQDHAAGALFSLALEDANKTAIGVLGALPPLLHTLRSESERARNDSA 311

Query: 373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGG 432
           LALYHLSLV+SNRTKLVKLG+V  L+GMVNSGH+  R LL+L NLA+C DGR A+LD+G 
Sbjct: 312 LALYHLSLVQSNRTKLVKLGAVQILMGMVNSGHLWSRALLVLCNLAACPDGRTAMLDAGA 371

Query: 433 VECLVGMLRKGTEL-SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEH 491
           VECLVG+LR G EL S+S +ESC++ LYALS GG RFKGLA  AG  E LMR+E++GSE 
Sbjct: 372 VECLVGLLR-GNELDSDSIRESCLAALYALSFGGSRFKGLAKEAGAMETLMRVEKIGSER 430

Query: 492 VKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSRF 530
            +EKAK++LE+M+   E+ EEG+DW+ LLDSGLVSR+R+
Sbjct: 431 AREKAKKILEIMR---EKTEEGLDWEALLDSGLVSRTRY 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805680|ref|XP_002870724.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297316560|gb|EFH46983.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 312/540 (57%), Positives = 396/540 (73%), Gaps = 29/540 (5%)

Query: 13  RQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
           + KW+IS     S  S+ +     P   E P EFLCP+SGSLM+DP++VSSGH++ERAC 
Sbjct: 32  KSKWRIS----LSRSSSSSSSNNSPTKTEIPAEFLCPISGSLMSDPIIVSSGHSYERACV 87

Query: 73  HVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 132
              KTLGFTP       PDFSTVIPNLALKS IL+WC ++   PPKPL+ ++AEKL+   
Sbjct: 88  IASKTLGFTP----NPPPDFSTVIPNLALKSAILSWCERRCFPPPKPLDSAAAEKLILTL 143

Query: 133 MESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVS 192
           ME  ++  + ++VSEKELI+ +++KPSV  NHA +EL RRP YF     + S  ES   S
Sbjct: 144 ME--KTPQRKVSVSEKELIKAIRDKPSVRLNHAATELDRRPNYF-----NSSSDESIASS 196

Query: 193 TPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLR 252
           +  LQLTT+PSC+SS SS     E ++L  PN   +E+  + KLKS ++ E+EEALIS+R
Sbjct: 197 SRTLQLTTKPSCFSSPSSG----EIESL-EPNLTPEEEALLTKLKSNRISEIEEALISIR 251

Query: 253 KLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLV 312
           ++TR  E +R+SLCT RL+ AL+SLI+SRY  VQVN  A LVNLSLEK NK+ IVRSG+V
Sbjct: 252 RVTRIDESSRISLCTTRLISALKSLIVSRYVTVQVNVTAVLVNLSLEKSNKVKIVRSGIV 311

Query: 313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSA 372
           PP++DVL  GS EAQEH+ G IFSLAL+D+NKTAIGVLG L PLLHL++  +E T+HDSA
Sbjct: 312 PPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSA 371

Query: 373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGG 432
           LALYHLSLV+SNR KLVKLG+V  LL MV  G M GRVLLIL N+ASC   R A+LDSGG
Sbjct: 372 LALYHLSLVQSNRGKLVKLGAVQMLLNMVKLGQMIGRVLLILCNMASCPVSRPALLDSGG 431

Query: 433 VECLVGMLRKGTELSESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEH 491
           VEC+VG+LR   E++EST+ESCV+VLY LSH GGLRFKGLA AA   E L+++ER G E 
Sbjct: 432 VECMVGVLRGDREVNESTRESCVAVLYELSHDGGLRFKGLAMAANAVEELVKVERSGRER 491

Query: 492 VKEKAKRMLELMKGRAEE----EEEGVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 546
            K+KA+R+LE+++ + E+    E E +DW+ELL+SG VSRSRFR+G   GE S  NS+EF
Sbjct: 492 AKQKARRVLEVLRAKMEDDDSPENEEIDWEELLNSGDVSRSRFRIG---GEKSCVNSAEF 548

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550235|ref|XP_003543493.1| PREDICTED: U-box domain-containing protein 40-like [Glycine max]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 313/555 (56%), Positives = 398/555 (71%), Gaps = 45/555 (8%)

Query: 8   TSSPKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTF 67
           T +  + KWK  F+++ +          K Q   PP EFLCP+S SLM DPV+VSSGH++
Sbjct: 32  TPNTPKLKWKKIFFQTKT----------KTQIQTPPEEFLCPISRSLMFDPVIVSSGHSY 81

Query: 68  ERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHK-------------QSL 114
           ER+    CK + FTP L DGTTPDFST+IPNLALKS IL WC               Q+L
Sbjct: 82  ERSSVEACKNVNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPHPNNNPVQTL 141

Query: 115 NPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELI-RGVKEKPSVS--FNHAVSELTR 171
                   SS   LV     S+ +    + +S+K+LI   + E P V    +HA +E+  
Sbjct: 142 -------ISSNPNLVHTINPSNTN----LKISDKDLILNSLNENPPVKNLCHHAETEVPI 190

Query: 172 RPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDY 231
           RP + Y +SS+ES+  +S  STPPLQ +TRPSC   SS SSSELEP T+       +E+ 
Sbjct: 191 RPTHLY-TSSEESIATTS-ASTPPLQFSTRPSCCYYSSPSSSELEPATI------PEEEE 242

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            + KLK+PQ++ +EEALISLRKLTR REETR+ LCTPRLL ALRSL++S++ NVQVNA+A
Sbjct: 243 IMTKLKNPQLNAIEEALISLRKLTRIREETRLQLCTPRLLSALRSLVLSKHVNVQVNALA 302

Query: 292 ALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG 351
           ++VNLSLEK NK+ IVRSG+VPP+++VL  GS+EAQEH  GA+FSLALDD NKTAIGVLG
Sbjct: 303 SVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLALDDDNKTAIGVLG 362

Query: 352 ALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVL 411
            L PLLH+L+S+SERT+HDSALALYHLSLV+SNR+K+VKLGSV  LL MV SGHMTGRVL
Sbjct: 363 GLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLNMVKSGHMTGRVL 422

Query: 412 LILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL 471
           LILGNL S SDGR  +LD+G VECLVG+L      S ST+ESCVSV+YALSHGGLRFK +
Sbjct: 423 LILGNLGSGSDGRATMLDAGMVECLVGLLSGAESRSGSTRESCVSVMYALSHGGLRFKAV 482

Query: 472 AAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSRFR 531
           A  AG+ EV+ ++E+VG+E  + K +++LE+M+ +  EEE+ VDW+ELLDSGL  R+R R
Sbjct: 483 AKVAGVMEVMQKVEKVGTERARNKVRKILEIMRAKEVEEEDHVDWEELLDSGLPCRTRTR 542

Query: 532 LGYGRGESTGNSSEF 546
           LG G  +ST NS++F
Sbjct: 543 LGAGLDDSTPNSAQF 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457140|ref|XP_002283638.1| PREDICTED: U-box domain-containing protein 38-like [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 303/523 (57%), Positives = 378/523 (72%), Gaps = 22/523 (4%)

Query: 13  RQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
           + +WKISF RSSSS+  ++           P EF+CP+SGSLMADPVVV+SG TFER   
Sbjct: 6   KHRWKISF-RSSSSMPKQS-----------PKEFMCPISGSLMADPVVVASGQTFERISV 53

Query: 73  HVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRAS 132
            VC+ L F P L DG+ PDF+ VIPNLA+KS ILNWC    ++ P   E+ S E LVRA+
Sbjct: 54  QVCRNLAFVPVLGDGSRPDFTVVIPNLAMKSAILNWCAASRVDRPTEPEYGSVETLVRAA 113

Query: 133 MESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYASSSDESMGESSKVS 192
           M S          SEKEL+R V   P V F+HA +E+  RP +FY+SSS+ES+   + V 
Sbjct: 114 MGSDGDD--RFETSEKELLRAVPGNPPVMFSHAATEVNHRPNHFYSSSSEESV--IAAVP 169

Query: 193 TPPLQLTTRPSCYSSSSSSSSE-LEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISL 251
             PL LTTRPSCYSS SSSS E L       P S+E+E+  + KLKS +VHE EE LI L
Sbjct: 170 ATPLPLTTRPSCYSSFSSSSDEALSLAVTLDPISSEEEE-ILGKLKSSEVHEQEEGLILL 228

Query: 252 RKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGL 311
           R +TR++E+ RVSLCTP +L ALR L+ SRY  VQ NAVA++VNLSLEK NK  IVRSG+
Sbjct: 229 RTITRTKEDLRVSLCTPGVLSALRLLLNSRYGVVQTNAVASVVNLSLEKPNKAKIVRSGI 288

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDS 371
           VPP++D+L  G  E+QEHA GA+FSLA++D NKTAIGV+GALPPLLH L+S+SERT+HDS
Sbjct: 289 VPPLIDLLKGGLPESQEHAAGALFSLAIEDNNKTAIGVMGALPPLLHSLRSESERTRHDS 348

Query: 372 ALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSG 431
           ALALYHLSL +SNR KLVKLG++  LL MV SG +  R LLIL N+A+  DGR A+LD+ 
Sbjct: 349 ALALYHLSLDQSNRVKLVKLGAIPTLLAMVKSGDLASRALLILCNMAASGDGRSAMLDAN 408

Query: 432 GVECLVGMLRKGTEL-SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSE 490
            V+CLVG+LR G EL SESTQE+CV+VLY LSHG +RFKGLA  A   EVL  +E  GS 
Sbjct: 409 AVDCLVGLLR-GKELDSESTQENCVAVLYLLSHGSMRFKGLAREARAVEVLREVEERGSG 467

Query: 491 HVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSRFRLG 533
             +EKAKRML++M+GR EEEE  VDW+ +L+SG +S+ R+R+G
Sbjct: 468 RAREKAKRMLQMMRGRDEEEE--VDWEGVLESGALSQPRYRVG 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	546
TAIR|locus:2173742	550	AT5G40140 [Arabidopsis thalian	0.901	0.894	0.529	2.5e-129
TAIR|locus:2171810	556	PUB38 "plant U-box 38" [Arabid	0.965	0.947	0.419	1.3e-102
TAIR|locus:2154124	559	AT5G62560 [Arabidopsis thalian	0.587	0.574	0.448	6.9e-96
TAIR|locus:2100372	509	PUB39 "PLANT U-BOX 39" [Arabid	0.913	0.980	0.390	5.9e-89
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.364	0.325	0.313	1.3e-29
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.496	0.390	0.273	1.7e-29
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.496	0.326	0.243	2e-29
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.521	0.403	0.241	4.3e-29
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.366	0.316	0.302	1.8e-27
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.358	0.296	0.315	3e-27

TAIR|locus:2173742 AT5G40140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 273/516 (52%), Positives = 344/516 (66%)

Query:    37 PQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI 96
             P   E P EFLCP+SGSLMADP++VSSGH++ERAC   CKTLGFTPT      PDFSTVI
Sbjct:    53 PTKTEIPAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVI 108

Query:    97 PNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGVKE 156
             PNLALKS I +WC ++   PPKPL  ++AEKL+ A ME    + K ++VSEKELI+ +++
Sbjct:   109 PNLALKSAIHSWCERRCFPPPKPLNSAAAEKLILALMEKKPQRRK-VSVSEKELIQAIRD 167

Query:   157 KPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTRPSCYXXXXXXXXELE 216
             KPSV  NHA +EL RRP YF +                 LQLTT+PSC+        E+E
Sbjct:   168 KPSVRLNHAATELDRRPNYFNSSSDESIASSSRT-----LQLTTKPSCFSSPSSG--EIE 220

Query:   217 PQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXX 276
               +L  PN   +E+  + KLKS ++ E+EEALIS+R++TR  E +R+SLCT         
Sbjct:   221 --SLE-PNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKS 277

Query:   277 XXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS 336
                  Y                EK NK+ IVRSG+VPP++DVL  GS EAQEH+ G IFS
Sbjct:   278 LIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFS 337

Query:   337 LALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA 396
             LAL+D+NKTAIGV           +  +E T+HDSALALYHLSLV+SNR KLVKLG+V  
Sbjct:   338 LALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQM 397

Query:   397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS 456
             LLGMV+ G M GRVLLIL N+ASC   R A+LDSGGVEC+VG+LR+  E++EST+ESCV+
Sbjct:   398 LLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVA 457

Query:   457 VLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAXXXXX--- 512
             VLY LSH GGLRFKGLA AA   E L+++ER G E  K+KA+R+LE+++ +         
Sbjct:   458 VLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVEN 517

Query:   513 -GVDWDELLDSGLVSRSRFRLGYGRGE-STGNSSEF 546
               +DW+ELL+SG VSRSR RLG   GE S  NS+EF
Sbjct:   518 EEIDWEELLNSGDVSRSRCRLG---GEKSCVNSAEF 550

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2171810 PUB38 "plant U-box 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 234/558 (41%), Positives = 320/558 (57%)

Query:    13 RQKWKISFYRXXXXXXTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA 72
             R +W    +R      + + Q Q+ Q  +PP EFLCP+S S+M+DPVVVSSG TFER C 
Sbjct:     6 RLRWNPFSHRSSSSTSSSSRQQQQEQ--QPPVEFLCPISKSVMSDPVVVSSGQTFERVCV 63

Query:    73 HVCKTLGFTPTLVDG--TTPDFSTVIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVR 130
              VC+ L F P L D   + PDFS +IPNL +KSTI  WC    ++ P+P ++S+ E+++R
Sbjct:    64 QVCRDLNFIPKLNDDEESLPDFSNIIPNLNMKSTIDTWCDTVGVSRPQPPDYSTVERILR 123

Query:   131 ASMESSQSKGKAMAVSEKELIRGVKEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXX 190
               M     +   + VSE+EL+R V  +  +  +HA SEL  R  +  +            
Sbjct:   124 QQMPPPDVE---IRVSEQELLRAVAHRAPMIIHHADSELMGRRDFNNSTTSSDESVIVAH 180

Query:   191 XXTPPLQLTTRPSCYXXXXXXXXELEPQTLNH----PNSN----EQEDYFVQKLKSPQVH 242
                 PL LTTRP+C+          E +TL H     NS     E+++    KLKS ++ 
Sbjct:   181 SPFTPLPLTTRPACFSPSPSSSSS-EIETLTHHTFFSNSTSTATEEDEVIYNKLKSSEIF 239

Query:   243 EVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXXXXXXXXEKIN 302
             + E+ LI +RK+TR+ +E RVSLC+P             Y+               +K N
Sbjct:   240 DQEQGLIMMRKMTRTNDEARVSLCSPRILSLLKNMIVSRYSLVQTNALASLVNLSLDKKN 299

Query:   303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXKS 362
             K+ IVR G VP ++DVL +GS EAQEHA G IFSL+L+D NK  IGV           ++
Sbjct:   300 KLTIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIGVLGALQPLLHALRA 359

Query:   363 -DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCS 421
              +S+RT+HDSALALYHL+L ++NR+KLV+LG+V AL  MV SG    R LL++ NLA CS
Sbjct:   360 AESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASRALLVICNLACCS 419

Query:   422 DGRVAVLDSGGVECLVGMLRKG-----TEL--SESTQESCVSVLYALSHGGLRFKGLAAA 474
             +GR A+LD+  V  LVG LR+      TE   S S +E+CV+ L+ALSH  LRFKGLA  
Sbjct:   420 EGRSAMLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALSHESLRFKGLAKE 479

Query:   475 AGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA-----XXXXXGVDWDELLDSGLVSRSR 529
             A   EVL  +E  G+E  +EKAK++L+LM+ R            +DWD ++DS    RSR
Sbjct:   480 ARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIRSR 539

Query:   530 FRLGYGRGES-TGNSSEF 546
             FR+G GR    T NSS F
Sbjct:   540 FRVG-GRNRVVTQNSSGF 556

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

TAIR|locus:2154124 AT5G62560 [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 149/332 (44%), Positives = 201/332 (60%)

Query:   223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXY 282
             P S E+E+ F  KL+   + + E+ LI LRK+TRS E+ RVSLCT              Y
Sbjct:   231 PMSPEEEEIF-NKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDRILSFLRSLLVSRY 289

Query:   283 TXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ 342
                             EK NK+ IVRSG VP ++DVL +G+ EAQEH  GA+FSLAL+D+
Sbjct:   290 NLVQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDE 349

Query:   343 NKTAIGVXXXXXXXXXXXKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV 401
             NK  IGV           +S +SER + D+ALALYHLSL+ SNRT+LV+ G+V  LL MV
Sbjct:   350 NKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMV 409

Query:   402 NSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK-GTELSESTQESCVSVLYA 460
              SG  T R+LL+L NLA+C DG+ A+LD   V  LVG LR+ G   SE+ +E+CV+VL  
Sbjct:   410 RSGDSTSRILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLT 469

Query:   461 LSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAXXXXX-GV----- 514
             L  G LRF+GLA+ AG  EVLM +E  G+E VKEKA ++L  M+G        G      
Sbjct:   470 LCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESEFGENAEAR 529

Query:   515 DWDELLDSGLVSRSRFRLGYGRGESTGNSSEF 546
             +W+ +L++  +SR++F+ G   G +   SS+F
Sbjct:   530 EWNRMLEATGLSRTQFQGGQNGGFAY--SSQF 559

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2100372 PUB39 "PLANT U-BOX 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 203/520 (39%), Positives = 287/520 (55%)

Query:    35 QKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST 94
             Q     E P EFLCP++G LM+DPVVV+SG TFER    VC+ L F P L DGT PD ST
Sbjct:     3 QHNSPGETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLST 62

Query:    95 VIPNLALKSTILNWCHKQSLNPPKPLEFSSAEKLVRASMESSQSKGKAMAVSEKELIRGV 154
             VIPNLA+KSTIL+WC +  +  P+P +++  E +VR  M+S    G    +++ E++  V
Sbjct:    63 VIPNLAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDSLPP-GSGHRIAKSEILPPV 121

Query:   155 KEKPSVSFNHAVSELTRRPAYFYAXXXXXXXXXXXXXXTPPLQLTTRPSCYXXXXXXXXE 214
              E  + + ++         +   A               P  Q  TRP  +         
Sbjct:   122 AENSNSNSDY--------DSVMGAIRSRSRTSLSSTTSLPLHQ--TRPINHSTRIQSSFS 171

Query:   215 LEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXX 274
                 +   P S E+E+ +  KL S    + E+ LI LRK TRS E TR+SLCT       
Sbjct:   172 TSDYSSFPPMSPEEEEIY-NKLTSVDTIDHEQGLIQLRKTTRSNETTRISLCTDRILSLL 230

Query:   275 XXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAI 334
                    Y                EK NK+ IVRSG VP ++DVL +GS EAQEH  GA+
Sbjct:   231 RSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGAL 290

Query:   335 FSLALDDQNKTAIGVXXXXXXXXXXXKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGS 393
             FSLA++++NK  IGV           +S +SER + D+ALALYHLSL+ +NR++LVK G+
Sbjct:   291 FSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGA 350

Query:   394 VNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK--GTELSESTQ 451
             V  +L M+ SG    R+LL+L NLA+CS+G+ A+LD   V  LVG LR+  G E   + +
Sbjct:   351 VPMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAAR 410

Query:   452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLELMKGRAXX 509
             E+CV  L  LS G +RF+GLA+ AG  E+L  +     GS  +KEKA ++L+ ++G    
Sbjct:   411 ENCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASKILQTLRGGGSE 470

Query:   510 XXXGVD---WDELLDSGLVSRSRFRLGYGRGESTGNSSEF 546
                G +   W+ +L++  +SRS+F+ G  +G     SS+F
Sbjct:   471 FGEGAEAREWNRMLEASGLSRSQFQQGGQKG-GFAYSSQF 509

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 247 (92.0 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
 Identities = 64/204 (31%), Positives = 105/204 (51%)

Query:   302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXK 361
             NK  IV S  +P IV+VL  GS E +E+A   +FSL++ D+NK  IG             
Sbjct:   398 NKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLC 457

Query:   362 SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLG-MVN-SGHMTGRVLLILGNLAS 419
               S R + D+A A+++L + + N+ + VK G V  L+  +V+ +G M    L +L  LA 
Sbjct:   458 DGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAG 517

Query:   420 CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAE 479
               +G++ +  S  +  LV +++ G   S   +E+  ++L+ L          A AAG+ +
Sbjct:   518 NPEGKIVIARSEPIPPLVEVIKTG---SPRNRENAAAILWLLCSADTEQTLAAKAAGVED 574

Query:   480 VLMRMERVGSEHVKEKAKRMLELM 503
              L  +   G++  K KA  +LELM
Sbjct:   575 ALKELSETGTDRAKRKASSILELM 598

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 248 (92.4 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
 Identities = 76/278 (27%), Positives = 122/278 (43%)

Query:   230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXX 289
             D  + KL SP   E   A   LR L +     R+ +                        
Sbjct:   370 DALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHA 429

Query:   290 XXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349
                       + NK  I+ SG VP IV VL  GS EA+E+A   +FSL++ D+ K  IG 
Sbjct:   430 VTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489

Query:   350 XXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMT 407
                           S+R + D+A AL++L + + N+ + ++ G V  ++G+V +  G + 
Sbjct:   490 MGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALM 549

Query:   408 GRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR 467
                + IL  L+S  +G+ A+  +  V  LV M+  GT  +   +E+  +V+  L  G   
Sbjct:   550 DEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRN---RENAAAVMLHLCSGEHH 606

Query:   468 FKGLAAA--AGMAEVLMRMERVGSEHVKEKAKRMLELM 503
                LA A   G+   L  +   G++  K KA ++LE M
Sbjct:   607 LVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 67/275 (24%), Positives = 128/275 (46%)

Query:   233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXXXXXXXXXXXYTXXXXXXXXX 292
             V++LKS  +    +A   LR L +   + R+ +                 +         
Sbjct:   550 VEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTA 609

Query:   293 XXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXX 352
                      NK  I  +G + P++ VL  GS+EA+E++   +FSL++ ++NK  IG    
Sbjct:   610 LLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGA 669

Query:   353 XXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN-SGHMTGRVL 411
                      + + R + D+A AL++LS+ + N+  +V+ G+V  L+ +++ +  M  + +
Sbjct:   670 IGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAV 729

Query:   412 LILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL 471
              +L NLA+  +GR A+   GG+  LV ++  G   S   +E+  + L  LS    RF  +
Sbjct:   730 AVLANLATIPEGRNAIGQEGGIPLLVEVVELG---SARGKENAAAALLQLSTNSGRFCNM 786

Query:   472 AAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR 506
                 G    L+ + + G+   +EKA+ +L   + +
Sbjct:   787 VLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 821

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 71/294 (24%), Positives = 135/294 (45%)

Query:   217 PQTLNHPNSNEQEDYFVQKL----KSPQVHEVEEALISLRKLTRSREETRVSLCTPXXXX 272
             P T+    S+   +  V+KL    KS  +    EA   +R L R+  + R+ +       
Sbjct:   407 PATVRETGSSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIP 466

Query:   273 XXXXXXXXXYTXXXXXXXXXXXXXXXEKINKMLIVRSGLVPPIVDVLMAGSAE-AQEHAC 331
                                          NK LI  SG + P++ VL  G  E A+ ++ 
Sbjct:   467 SLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSA 526

Query:   332 GAIFSLALDDQNKTAIGVXXXXXXXXXXXKSDSERTQHDSALALYHLSLVKSNRTKLVKL 391
               +FSL++ ++ KT IG             S S   + D+A AL++LS+   N+TK+++ 
Sbjct:   527 ATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEA 586

Query:   392 GSVNALLGMVNSGH-MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSEST 450
             G+V  L+ +++    M  + +++L NLA+  +G++A+ + GG+  LV ++  G+  +   
Sbjct:   587 GAVRYLVELMDPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGS--ARGK 644

Query:   451 QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK 504
             + +  ++L   +H   +F       G+   L+ + + G+   KEKA+ +L+  K
Sbjct:   645 ENATAALLQLCTHSP-KFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFK 697

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
 Identities = 62/205 (30%), Positives = 109/205 (53%)

Query:   302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXK 361
             NK  IV +G +  IV+VL  GS EA+E+A   +FSL++ D+NK AIG            +
Sbjct:   420 NKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLE 479

Query:   362 SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLAS 419
               + R + D+A A+++L + + N+++ VK G V+ L  ++    G M    L IL  L++
Sbjct:   480 EGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILST 539

Query:   420 CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAE 479
               +G+ A+ ++  +  LV ++R G   S   +E+  ++L+ L  G +    +A   G   
Sbjct:   540 NQEGKTAIAEAESIPVLVEIIRTG---SPRNRENAAAILWYLCIGNIERLNVAREVGADV 596

Query:   480 VLMRMERVGSEHVKEKAKRMLELMK 504
              L  +   G++  K KA  +LEL++
Sbjct:   597 ALKELTENGTDRAKRKAASLLELIQ 621

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
 Identities = 64/203 (31%), Positives = 102/203 (50%)

Query:   302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVXXXXXXXXXXXK 361
             NK  IV +G +P IV VL  GS EA+E+A   +FSL++ D+NK  IG             
Sbjct:   427 NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLN 486

Query:   362 SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN---SGHMTGRVLLILGNLA 418
               ++R + D+A AL++L + + N+ K ++ G +  L  ++    SG M    L IL  L+
Sbjct:   487 EGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSG-MVDEALAILAILS 545

Query:   419 SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA 478
             S  +G+  +  S  V  LV  +R G   S   +E+  +VL  L  G  +    A   G+ 
Sbjct:   546 SHPEGKAIIGSSDAVPSLVEFIRTG---SPRNRENAAAVLVHLCSGDPQHLVEAQKLGLM 602

Query:   479 EVLMRMERVGSEHVKEKAKRMLE 501
               L+ +   G++  K KA ++LE
Sbjct:   603 GPLIDLAGNGTDRGKRKAAQLLE 625

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FL17	PUB40_ARATH	6, ., 3, ., 2, ., -	0.6007	0.9010	0.8945	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	546
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-14
smart00504	63	smart00504, Ubox, Modified RING finger domain	2e-13
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-12
pfam04564	73	pfam04564, U-box, U-box domain	4e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 265 LCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGS 323
           +     L AL SL+ S   NVQ  A  AL NLS     N   +V +G +P +V +L +  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 324 AEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLS 379
            E  + A  A+ +LA   ++   I +  G +P L++LL S +E  Q ++  AL +L+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 45  EFLCPVSGSLMADPVVVSSGHTFERACAHVC-KTLGFTPTLVDGTTPDFSTVIPNLALKS 103
           EFLCP+S  +M DPV++ SG T+ER+       + G  P      T +   +IPNLALKS
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHGTDPVTGQPLTHE--DLIPNLALKS 58

Query: 104 TILNW 108
            I  W
Sbjct: 59  AIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSD 363
            ++++G +P +V +L +     Q  A  A+ +L+  +  N  A+   G LP L+ LLKS+
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 364 SERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVNSGHMTGR--VLLILGNLAS 419
            E     +  AL +L+    +   +V + G V  L+ +++S +   +      L NLAS
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 43  PGEFLCPVSGSLMADPVVVSSGHTFERAC--AHVCKTLGFTPTLVDGTTPDFSTVIPNLA 100
           P EFL P++  LM DPV++ SG T++R+    H+       P   +  T D   +IPNL 
Sbjct: 2   PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHD--QLIPNLE 59

Query: 101 LKSTILNW 108
           LK  I  W
Sbjct: 60  LKEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 44/226 (19%)

Query: 232 FVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVN 288
            +++L  KS    E E     L +L ++REE R ++ +  + +  L SL+ S     +VN
Sbjct: 18  CIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVN 77

Query: 289 AVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA---LDDQNKT 345
           A A L  L  E+  ++ ++  G +PP++ +L +GSAEAQ+ A  AI++++   L D   +
Sbjct: 78  AAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS 137

Query: 346 AIGVL-GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG 404
            I    G +P L   L+                     + + K+V+             G
Sbjct: 138 KIFSTEGVVPSLWDQLQP-------------------GNKQDKVVE-------------G 165

Query: 405 HMTGRVLLILGNLASCSDGR-VAVLDSGGVECLVGMLRKGTELSES 449
            +TG     L NL   +DG   A L++GGV+ LV +L  G   +++
Sbjct: 166 LLTG----ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQA 207

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 340 DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379
             +NK A+   GA+PPL+ LL S  E  Q ++A AL +L+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338
           NK  ++ +G VPP+V +L +   E QE A  A+ +LA
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 41/133 (30%)

Query: 351 GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRV 410
           G LP L+ LL S  E  Q ++A AL +LS                               
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSNLS------------------------------- 35

Query: 411 LLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKG 470
                  A  +D   AV+++GG+  LV +L+      E   ++ +  L  L+ G    K 
Sbjct: 36  -------AGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLAAGPEDNKL 85

Query: 471 LAAAAGMAEVLMR 483
           +   AG    L+ 
Sbjct: 86  IVLEAGGVPKLVN 98

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 340 DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379
           DD+NK A+   G LP L+ LLKS+ E    ++A AL +LS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	546
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.87
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.87
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.85
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.82
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.77
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.7
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.44
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.37
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.33
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.3
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.21
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.21
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.17
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.16
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.15
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.13
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.13
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.09
PRK09687	280	putative lyase; Provisional	99.07
PRK09687	280	putative lyase; Provisional	99.06
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.01
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.94
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.87
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.84
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.83
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.79
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.78
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.77
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.76
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.76
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.67
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.61
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.6
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.57
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.56
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.55
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.55
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.5
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.5
PHA02929	238	N1R/p28-like protein; Provisional	98.48
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.44
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.41
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.38
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.38
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.37
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.35
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.35
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.33
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.31
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.26
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.25
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.24
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.23
TIGR02270	410	conserved hypothetical protein. Members are found	98.23
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.21
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.19
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.19
PHA02926	242	zinc finger-like protein; Provisional	98.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.08
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.07
PF14634	44	zf-RING_5: zinc-RING finger domain	98.07
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.06
PTZ00429	746	beta-adaptin; Provisional	98.05
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
PF05536	543	Neurochondrin: Neurochondrin	97.98
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.96
PF05536	543	Neurochondrin: Neurochondrin	97.92
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.92
COG5369	743	Uncharacterized conserved protein [Function unknow	97.91
PTZ00429	746	beta-adaptin; Provisional	97.89
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.88
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.76
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.7
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.7
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.68
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.67
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.63
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.63
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.63
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.62
KOG2660	331	consensus Locus-specific chromosome binding protei	97.62
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.61
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.56
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.54
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.49
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.47
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.45
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.39
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.35
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.34
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.31
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.31
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.29
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.29
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.28
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.25
TIGR02270	410	conserved hypothetical protein. Members are found	97.25
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.25
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
COG5369	743	Uncharacterized conserved protein [Function unknow	97.2
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.06
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.02
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.02
COG5152	259	Uncharacterized conserved protein, contains RING a	96.95
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.9
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.9
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.87
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.86
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.82
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.77
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.77
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.76
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.74
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.69
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.69
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.67
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.65
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.58
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.53
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.5
KOG0289	506	consensus mRNA splicing factor [General function p	96.41
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.35
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.34
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.33
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.32
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.29
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.22
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.21
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.18
KOG2979	262	consensus Protein involved in DNA repair [General	96.16
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.15
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.14
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.03
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.99
PF04641	260	Rtf2: Rtf2 RING-finger	95.99
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.93
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.92
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.89
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.87
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.81
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.8
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.8
KOG3036	293	consensus Protein involved in cell differentiation	95.69
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.64
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.62
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.61
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.53
PF05004	309	IFRD: Interferon-related developmental regulator (	95.49
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.44
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.17
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.16
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.12
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.09
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.06
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.04
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.86
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.82
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.77
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.77
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.77
KOG3036	293	consensus Protein involved in cell differentiation	94.74
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.61
KOG0567	289	consensus HEAT repeat-containing protein [General	94.57
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.47
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.37
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	94.36
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.36
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	94.27
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.24
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	94.23
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.22
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.13
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.12
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.86
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.83
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.79
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.75
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.62
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.57
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.52
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.4
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	93.39
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.31
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	93.24
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.21
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.98
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.88
KOG0567	289	consensus HEAT repeat-containing protein [General	92.85
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.79
KOG3113	293	consensus Uncharacterized conserved protein [Funct	92.73
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.61
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.54
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	92.2
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.18
PF05004	309	IFRD: Interferon-related developmental regulator (	92.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.93
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	91.83
KOG0414	1251	consensus Chromosome condensation complex Condensi	91.43
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.32
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	91.3
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	91.23
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	91.07
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	90.95
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	90.83
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	90.67
PF08045	257	CDC14: Cell division control protein 14, SIN compo	90.53
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.34
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.33
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.09
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	89.96
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.91
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	89.85
KOG0825	1134	consensus PHD Zn-finger protein [General function	89.63
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	89.51
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	89.45
KOG2025	892	consensus Chromosome condensation complex Condensi	89.3
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.06
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.95
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.79
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.32
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	88.17
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	87.81
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	87.8
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	87.66
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	87.48
KOG4653	982	consensus Uncharacterized conserved protein [Funct	87.37
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.35
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	87.33
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	87.09
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	87.09
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	86.88
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	86.78
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	86.66
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.46
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.19
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	86.01
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	85.73
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	85.37
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	85.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	84.95
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	84.74
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	84.67
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	84.49
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	84.47
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.39
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.16
KOG2032	533	consensus Uncharacterized conserved protein [Funct	84.13
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	83.84
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	83.75
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	83.47
COG5175	480	MOT2 Transcriptional repressor [Transcription]	83.09
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	83.04
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	82.8
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	82.65
PRK14707	2710	hypothetical protein; Provisional	82.62
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	82.46
KOG4653	982	consensus Uncharacterized conserved protein [Funct	82.15
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	82.03
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.0
KOG2956	516	consensus CLIP-associating protein [General functi	81.72
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.67
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	81.6
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	81.29
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	81.17
PF07814	361	WAPL: Wings apart-like protein regulation of heter	80.95
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	80.83
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	80.77
COG5109	396	Uncharacterized conserved protein, contains RING Z	80.47
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	80.05
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	80.03

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=3e-26  Score=269.75  Aligned_cols=280  Identities=25%  Similarity=0.304  Sum_probs=249.9

Q ss_pred             chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch
Q 009036          226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      ...+.++++.|+++  +.+.|+.|+..|+.++++++++|..+.+ .|+||.|+.+|.+++..++++|+.+|.+|+.++++
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n   91 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL   91 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence            46788999999866  7899999999999999999999999996 99999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc---chhhHH-hhcCChHHHHHhhccCC---HHHHHHHHHHH
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD---QNKTAI-GVLGALPPLLHLLKSDS---ERTQHDSALAL  375 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i-~~~g~l~~Lv~lL~~~~---~~~~~~A~~aL  375 (546)
                      +..|+..|++++|+++|++++.+.|++|+++|++|+.+.   +++..| ...|+++.|+.+|++++   .-++..|+.+|
T Consensus        92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL  171 (2102)
T PLN03200         92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL  171 (2102)
T ss_pred             HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999873   445454 46999999999999863   23556778999


Q ss_pred             HHhhcCchhHH-HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036          376 YHLSLVKSNRT-KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQ  451 (546)
Q Consensus       376 ~~Ls~~~~n~~-~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~  451 (546)
                      +|||.+.+++. .+++.|+|+.|+.+|.+++  .++.|+.+|.+++.. ++++..+++.|+|+.|+++|.++  .+..++
T Consensus       172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg--~~~~VR  249 (2102)
T PLN03200        172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG--NEVSVR  249 (2102)
T ss_pred             HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC--CChHHH
Confidence            99999988875 5689999999999998764  889999999888865 77999999999999999999875  346899


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCC---------HHHHHHHHHHHHHhhcCC
Q 009036          452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGS---------EHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       452 e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s---------~~~k~~A~~lL~~L~~~~  507 (546)
                      ++|+++|.+||.++.+.+..+.+.|+++.|+.++...+         ...++.|.++|.+|++..
T Consensus       250 E~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~  314 (2102)
T PLN03200        250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM  314 (2102)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence            99999999999998899999999999999999988654         345999999999999853

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.94  E-value=3.8e-25  Score=260.48  Aligned_cols=282  Identities=20%  Similarity=0.194  Sum_probs=246.2

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      +.++++.|+++|++++.+.|..|++.|++++..+++++..+++.|+||.|+.+|.+++..++++|+++|.||+.++.+..
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999876655


Q ss_pred             HHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh--------------------------------------h
Q 009036          305 LIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK--------------------------------------T  345 (546)
Q Consensus       305 ~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k--------------------------------------~  345 (546)
                      .++ +.|++++|+++|++++.+++..|+++|.+|+...+..                                      .
T Consensus       524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~  603 (2102)
T PLN03200        524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE  603 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            544 7899999999999999999999999999996322110                                      0


Q ss_pred             HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC--C
Q 009036          346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS--C  420 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~--~  420 (546)
                      .....|+++.|+++|++++.+.++.|+++|.+++.. .+++..++..|+|+.|+.+|..++  ++..++.+|.||..  .
T Consensus       604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence            111358999999999999999999999999999984 567888999999999999998765  88899999999995  3


Q ss_pred             cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036          421 SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML  500 (546)
Q Consensus       421 ~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL  500 (546)
                      .+++..+++.|+|++|+++|..   .+.+.++.|+.+|.+++.+.+ .+..+...|+++.|++++++|+++.|+.|.++|
T Consensus       684 ~~q~~~~v~~GaV~pL~~LL~~---~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL  759 (2102)
T PLN03200        684 ENRKVSYAAEDAIKPLIKLAKS---SSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARAL  759 (2102)
T ss_pred             HHHHHHHHHcCCHHHHHHHHhC---CChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence            4456678899999999999988   468999999999999999874 455566778899999999999999999999999


Q ss_pred             HHhhcCCccc
Q 009036          501 ELMKGRAEEE  510 (546)
Q Consensus       501 ~~L~~~~~~~  510 (546)
                      ..|++....+
T Consensus       760 ~~L~~~~~~~  769 (2102)
T PLN03200        760 AQLLKHFPVD  769 (2102)
T ss_pred             HHHHhCCChh
Confidence            9998766533

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.6e-25  Score=217.53  Aligned_cols=294  Identities=22%  Similarity=0.300  Sum_probs=266.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      -..++.|+..+.+...++|+.++..|.+|+.. +.+|..+...|++.+|..+-++.|..+|.++..+|.||....+||..
T Consensus       125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~  203 (550)
T KOG4224|consen  125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRV  203 (550)
T ss_pred             ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhh
Confidence            35567788888788899999999999999988 68999999999999999988899999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcC--ChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG--ALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      ++..|++|.|+.++++++..++.+++.++.+++.+...+..+.+.+  .++.|++++++++++++-.|..+|.||++..+
T Consensus       204 LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~  283 (550)
T KOG4224|consen  204 LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE  283 (550)
T ss_pred             hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence            9999999999999999999999999999999999998888888765  99999999999999999999999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL  461 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L  461 (546)
                      .+..++++|.+|.++++|.++.  ..-..+.++.|++..+-+.-.|++.|.+.+||++|+-+  +++++|-+|+.+|++|
T Consensus       284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAvstLrnL  361 (550)
T KOG4224|consen  284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAVSTLRNL  361 (550)
T ss_pred             hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC--CchhhhhhHHHHHHHH
Confidence            9999999999999999998754  55667889999999999888899999999999999997  5688999999999999


Q ss_pred             hcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          462 SHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       462 ~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      +..++..+.++.+.|+++.|.+++.++.-.++.....++..|+=...+.      ..++++|+.+-+
T Consensus       362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k------~~lld~gi~~iL  422 (550)
T KOG4224|consen  362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK------EALLDSGIIPIL  422 (550)
T ss_pred             hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH------HHHhhcCCccee
Confidence            9988888999999999999999999999999999999999987543222      335566666544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.2e-24  Score=208.40  Aligned_cols=280  Identities=23%  Similarity=0.283  Sum_probs=253.7

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      ..+++..+.+.-++.+..+|..+...|.++.. ..++|+.++.+|++|+|+.++.++|..+|..+..+|.|++-+..+|+
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            35677788886688899999999999999987 46899999999999999999999999999999999999999999999


Q ss_pred             HHHhcC--ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          305 LIVRSG--LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       305 ~i~~~g--~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      .+++.+  .++.|+.++.+++++++-.|..+|.+|+.+.++...|.+.|.+|.++++|+++........+.++.|++..+
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence            999887  999999999999999999999999999999999999999999999999999987777788888999999999


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      -|-.-|+++|.+..|+.+|..++   ++-.|..+|+||+. .+.++..|.+.|+|+.+..++..+   .-.+++..-+++
T Consensus       324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~---pvsvqseisac~  400 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG---PVSVQSEISACI  400 (550)
T ss_pred             CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC---ChhHHHHHHHHH
Confidence            99999999999999999998654   78899999999997 777899999999999999999985   356777777777


Q ss_pred             HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036          459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE  509 (546)
Q Consensus       459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~  509 (546)
                      ..|+-.+ ..+..+.+.|+++.|+.+..+.+.+++.+|+.+|-+|++..+.
T Consensus       401 a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  401 AQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             HHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence            7776544 5677888999999999999999999999999999999876543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3e-23  Score=216.32  Aligned_cols=282  Identities=18%  Similarity=0.233  Sum_probs=249.3

Q ss_pred             CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036          225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..+.++.+|..|. ..++..|.+|+++|.+++..+.+.-+.++++|++|.++.++.+++..+++.|+++|.|++.+ +..
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            3578899999996 55699999999999999999999999999999999999999999999999999999999997 677


Q ss_pred             HHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      |..+.+.|++++|+.++..... ....++.++|.||+...+....+. ...+++.|..+|.+.+.++..+|+|+|.+|+.
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            8888899999999999998754 788899999999998875444433 35789999999999999999999999999997


Q ss_pred             -CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH-HHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          381 -VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA-VLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       381 -~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~-i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                       .++.-..+++.|+++.|+++|...+  ++-.|++++.|++...+...+ +++.|+++.|..+|...  .....+..|++
T Consensus       267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikkEAcW  344 (514)
T KOG0166|consen  267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKKEACW  344 (514)
T ss_pred             CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHHHHHH
Confidence             4556677778899999999998765  777899999999987666555 56899999999999964  23457889999


Q ss_pred             HHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          457 VLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ++.|++.++....+.+.++|+++.|+.+++.+.-++|+.|++++.+++..+.
T Consensus       345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            9999999998888888999999999999999999999999999999998775

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.4e-21  Score=198.08  Aligned_cols=306  Identities=17%  Similarity=0.165  Sum_probs=259.2

Q ss_pred             CCCCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCH-HHHHHHHHHHHHhhcC
Q 009036          221 NHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYT-NVQVNAVAALVNLSLE  299 (546)
Q Consensus       221 ~~~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~-~v~~~A~~~L~nLs~~  299 (546)
                      +.+++.++++.++..|.+++.+++++|+++|.+++.+++..|..+.+.|+++.|+.++...+. ....++.++|.||+.+
T Consensus       146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            345678999999999999999999999999999999999999999999999999999988766 6788999999999986


Q ss_pred             CchHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036          300 KINKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH  377 (546)
Q Consensus       300 ~~nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~  377 (546)
                      ..-...+ .-..++|.|..+|++.+.++...|+++|.+|+... +.-..+.+.|+++.|+++|.+.+..++..|++++.|
T Consensus       226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            4211111 12357999999999999999999999999999765 455566779999999999999999999999999999


Q ss_pred             hhcCchh-HHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036          378 LSLVKSN-RTKLVKLGSVNALLGMVNS-G--HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       378 Ls~~~~n-~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      +....+. .+.++..|+++.|..++.. +  .+++.|+++|.|++. +.+..++++++|.+|.|+.+|..+   ..+.+.
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~---ef~~rK  382 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA---EFDIRK  382 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---chHHHH
Confidence            9885555 5566777999999999984 2  288999999999986 456788889999999999999995   478999


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccc---cCChHHHHhcCCcccc
Q 009036          453 SCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEE---GVDWDELLDSGLVSRS  528 (546)
Q Consensus       453 ~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~---~~~~~~~~~~~~~~~~  528 (546)
                      .|++++.|++.+ +.+.-..+.+.|+++.|..++.-.+.++-..+...|.++...++...+   .-.-.-+.+.||+..-
T Consensus       383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki  462 (514)
T KOG0166|consen  383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI  462 (514)
T ss_pred             HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHH
Confidence            999999999985 445556788999999999999888999999999999999988776664   2223557888888876


Q ss_pred             c
Q 009036          529 R  529 (546)
Q Consensus       529 ~  529 (546)
                      .
T Consensus       463 E  463 (514)
T KOG0166|consen  463 E  463 (514)
T ss_pred             H
Confidence            4

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.87  E-value=1e-22  Score=161.37  Aligned_cols=73  Identities=40%  Similarity=0.666  Sum_probs=63.9

Q ss_pred             CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      +|++|+||||+++|+|||++++||||||.+|++|++.++..||.|++++...+|+||..||+.|++|+.+|.+
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~   73 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK   73 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence            6999999999999999999999999999999999998788999999999999999999999999999999863

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.85  E-value=2.2e-20  Score=181.75  Aligned_cols=281  Identities=15%  Similarity=0.188  Sum_probs=240.4

Q ss_pred             CCchhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc
Q 009036          224 NSNEQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KI  301 (546)
Q Consensus       224 ~~~~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~  301 (546)
                      ++.+.++.+|..| ......-|.+|++.|.+++......-+.+++.|++|.++.+|.+.+.++++.++++|.|++-+ +.
T Consensus       111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence            3577889999999 444556789999999999998777777788999999999999999999999999999999997 56


Q ss_pred             hHHHHHhcCChHHHHHHHccCC--HHHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          302 NKMLIVRSGLVPPIVDVLMAGS--AEAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       302 nk~~i~~~g~l~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      .|..+.+.|++++|+.+|.+..  ..+..++.++|.||+........-. -..++|.|.+++.+.++++...|+|+|.+|
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl  270 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence            7888889999999999998774  5788999999999998753321111 135799999999999999999999999999


Q ss_pred             hcCc-hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH-HHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036          379 SLVK-SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA-VLDSGGVECLVGMLRKGTELSESTQESC  454 (546)
Q Consensus       379 s~~~-~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~-i~~~g~i~~Lv~lL~~~~~~s~~~~e~A  454 (546)
                      +..+ +....+++.|..+.|+++|.+++  ++.-+++.+.|+....+.... +++.|+++.+-.+|.+.   .+.++..|
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---ke~irKEa  347 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---KENIRKEA  347 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---hhhhhhhh
Confidence            9855 44566678899999999999876  777899999999987666555 45899999999999883   35788899


Q ss_pred             HHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          455 VSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       455 v~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ++.+.++..++.+..+.+.+++.+|.|+.++..-.-.+|+.|.+++.+....+
T Consensus       348 CWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg  400 (526)
T COG5064         348 CWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG  400 (526)
T ss_pred             heeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999999998888888899999999999999999999999999999887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.82  E-value=2e-19  Score=175.11  Aligned_cols=291  Identities=18%  Similarity=0.213  Sum_probs=241.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHH-hccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKL-TRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      .++.+.+.|-+.+.+.|..|+...+.+ +++..--...+.++|++|.++.++.+ ...-.+-+|+++|.|++....++.+
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            457888889999999999999999874 55544556677899999999999954 5666788999999999998777666


Q ss_pred             HH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcC
Q 009036          306 IV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLV  381 (546)
Q Consensus       306 i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~  381 (546)
                      ++ +.|++|.++.+|.+++.++++.+.++|.|++.+.+ .+..+.+.|++++|+.+|.+.  +....+++.|+|.|||..
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence            54 88999999999999999999999999999999874 588889999999999999875  457889999999999983


Q ss_pred             c---hhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          382 K---SNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       382 ~---~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      .   .+-..|-  .+++.|.+++..  .++...|++++..|+..+. ...++++.|+...|+++|.+   .+..++.-|+
T Consensus       232 knP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqtPal  306 (526)
T COG5064         232 KNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQTPAL  306 (526)
T ss_pred             CCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccCHHH
Confidence            2   2222222  368999999865  4588899999999998664 45566799999999999998   4577899999


Q ss_pred             HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      ....++..++....+++...|+++.+..++.+..+++|+.|.+.+.++....     ..+.+-++++-+.+.+
T Consensus       307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn-----teqiqavid~nliPpL  374 (526)
T COG5064         307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN-----TEQIQAVIDANLIPPL  374 (526)
T ss_pred             HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC-----HHHHHHHHhcccchHH
Confidence            9999999988788889999999999999999999999999999999987643     2234555555555544

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.77  E-value=1.4e-16  Score=175.23  Aligned_cols=298  Identities=19%  Similarity=0.257  Sum_probs=246.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      .+.+..|++.|.+++.+....++..|.+|+-. .+|+..|.+.|+|+.|+.++.+++.+++..++.+|.||+.++++|..
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~  367 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ  367 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            56788999999999999999999999999986 46999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchh
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                      |++.|++|.|+.+|.++  ..+..+..+|.+||.++++|..+...++++.|+++|-. .+.++..+++.++.||+.+..|
T Consensus       368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn  445 (708)
T PF05804_consen  368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN  445 (708)
T ss_pred             HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence            99999999999999865  45567999999999999999999988999999998765 4566667788889999999999


Q ss_pred             HHHHHhcCcHHHHHHHHhC----------------------------------------chHHHHHHHHHHHhhCC----
Q 009036          385 RTKLVKLGSVNALLGMVNS----------------------------------------GHMTGRVLLILGNLASC----  420 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~----------------------------------------~~~~e~al~~L~nLa~~----  420 (546)
                      .+.|.+.|+++.|++....                                        .+..-.++++|.||...    
T Consensus       446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~  525 (708)
T PF05804_consen  446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDW  525 (708)
T ss_pred             HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCH
Confidence            9888888778877653211                                        01344577777776532    


Q ss_pred             ----------------------------------------cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          421 ----------------------------------------SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       421 ----------------------------------------~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                                                              ++....+.+.|.++.|+.+|.... .+++..-+.+.+++.
T Consensus       526 ~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kq-eDdE~VlQil~~f~~  604 (708)
T PF05804_consen  526 AQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQ-EDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhC-chHHHHHHHHHHHHH
Confidence                                                    233444557888888888887754 467788888888888


Q ss_pred             HhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc----------ccCChHHHHhcCCccc
Q 009036          461 LSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE----------EGVDWDELLDSGLVSR  527 (546)
Q Consensus       461 L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~----------~~~~~~~~~~~~~~~~  527 (546)
                      +..+.+.+..++.+.+++..|+.++++.|+.+|+.|-.+|-.+.++..+=.          ...+|=++.+.-...-
T Consensus       605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~  681 (708)
T PF05804_consen  605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDD  681 (708)
T ss_pred             HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccccc
Confidence            888876677777888999999999999999999999999999998775332          4667888877544433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.77  E-value=3.4e-17  Score=179.89  Aligned_cols=215  Identities=21%  Similarity=0.244  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH
Q 009036          287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER  366 (546)
Q Consensus       287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~  366 (546)
                      ..++.+|.||+.+..++.++.+.|+++.|+.+|.+++.++...+..+|..|+...++|..+.+.|+++.|++++.+++.+
T Consensus       267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036          367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL  446 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~  446 (546)
                      ++..++++|+|||.+.++|..|++.|+||.|+.+|.+++.+..++++|.+|+..+++|..+...++++.|+++|..+  .
T Consensus       347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~--~  424 (708)
T PF05804_consen  347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN--S  424 (708)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC--C
Confidence            99999999999999999999999999999999999998888899999999999999999999999999999998875  2


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+.....++.++.||+... ...+++.+.|+++.|++......+..   ...++++++.+.
T Consensus       425 ~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~  481 (708)
T PF05804_consen  425 EEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHD  481 (708)
T ss_pred             CccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcC
Confidence            3555566788888888776 44456667778888888755443322   345666666655

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.71  E-value=2.6e-16  Score=169.41  Aligned_cols=280  Identities=21%  Similarity=0.182  Sum_probs=228.9

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC---Cc
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE---KI  301 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~---~~  301 (546)
                      ++..+++.+.+|.+.++.+|-.|...|..+++.+...|..+.+.|+|+.|+.+|.+...++|..|+.+|.||...   ++
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            467789999999999999999999999999999999999999999999999999999999999999999999984   36


Q ss_pred             hHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC--------------CHH
Q 009036          302 NKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD--------------SER  366 (546)
Q Consensus       302 nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~--------------~~~  366 (546)
                      ||..|.+.++|+.++++|+. .+.++++....+|+||+..|..|..|... ++..|..-+-..              ...
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence            99999999999999999997 69999999999999999998888877654 566665444221              245


Q ss_pred             HHHHHHHHHHHhhc-CchhHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCCcc-----c-H------
Q 009036          367 TQHDSALALYHLSL-VKSNRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASCSD-----G-R------  424 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~-~~~n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~~e-----~-r------  424 (546)
                      +..++..+|.|+++ ..+.|++|-+. |.|..|+..+..        ....|+|+.+|.||+..-+     . +      
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            77899999999998 67889999988 999999999873        1278999999999975211     0 0      


Q ss_pred             --------------------HH----------------------HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          425 --------------------VA----------------------VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       425 --------------------~~----------------------i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                                          ..                      +.+..+|..-+.+|...  .++.+.|.++++|-+|+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s--~n~~TlEasaGaLQNlt  547 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS--KNDNTLEASAGALQNLT  547 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh--cchHHHHHhhhhHhhhh
Confidence                                00                      01111333333444432  45788999999999998


Q ss_pred             cCC----hhhHH-HHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          463 HGG----LRFKG-LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       463 ~~~----~~~~~-~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+.    ...+. ++..+.+++.|++|++.+++++.+.+..+|++|+.+.
T Consensus       548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~  597 (717)
T KOG1048|consen  548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI  597 (717)
T ss_pred             ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence            753    23444 4488889999999999999999999999999999865

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.70  E-value=2.7e-16  Score=174.98  Aligned_cols=261  Identities=20%  Similarity=0.227  Sum_probs=224.9

Q ss_pred             HH-HHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc---------C---CHHHHHHHHHHHHHhhcC-CchHHHHH-h
Q 009036          244 VE-EALISLRKLTRSREETRVSLCTPRLLLALRSLIIS---------R---YTNVQVNAVAALVNLSLE-KINKMLIV-R  308 (546)
Q Consensus       244 ~~-~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s---------~---~~~v~~~A~~~L~nLs~~-~~nk~~i~-~  308 (546)
                      |. .|+..|..++. ++++|..+.+.|++..+.+||.-         +   +..++..|.++|.||... ..||..+. .
T Consensus       314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            44 67777777776 57999999999999999998752         1   346889999999999995 57888887 5


Q ss_pred             cCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-Cchh
Q 009036          309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSN  384 (546)
Q Consensus       309 ~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n  384 (546)
                      .|++..||..|.+...++.+..+.+|.||++..  ..|..+.+.|-+..|+..- +.......+..+.|||||+. ..+|
T Consensus       393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN  472 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN  472 (2195)
T ss_pred             hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence            699999999999999999999999999999875  3488888889998888764 44555677899999999998 5689


Q ss_pred             HHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhh----CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036          385 RTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLA----SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       385 ~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa----~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      +..|... |++..||.+|.-.      .+.|.+-+||.|.+    .+++.|+-+.+++++..|+..|++   .+-.+.-+
T Consensus       473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS---~SLTiVSN  549 (2195)
T KOG2122|consen  473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS---HSLTIVSN  549 (2195)
T ss_pred             chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh---cceEEeec
Confidence            9999998 9999999999753      17888999999965    477888888899999999999999   45678899


Q ss_pred             HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ++++||||...+.+.++++++.|+++.|..|+++.+.-+-+-++..|++|..+..
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            9999999999888999999999999999999999999999999999999987763

>smart00504 Ubox Modified RING finger domain

Probab=99.70  E-value=1.3e-17  Score=128.66  Aligned_cols=63  Identities=43%  Similarity=0.711  Sum_probs=59.5

Q ss_pred             ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036           45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW  108 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~  108 (546)
                      +|.||||+++|+|||+++|||+|||.||.+|+.. +..||.|+++++..+++||..|++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999986 56899999999888999999999999998

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=1.4e-14  Score=141.43  Aligned_cols=279  Identities=16%  Similarity=0.205  Sum_probs=236.1

Q ss_pred             CchhHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCc
Q 009036          225 SNEQEDYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       225 ~~~~i~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      +..+..-+++.|  +..+.+.....+..++.-+-.++.+|+.+.+.++++.+...|.. +...+...+.+++..|..+++
T Consensus       143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDD  222 (461)
T KOG4199|consen  143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDD  222 (461)
T ss_pred             ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCc
Confidence            345566677776  56677888899999999999999999999999999999976654 445677888899988877654


Q ss_pred             ----------hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC----CHH
Q 009036          302 ----------NKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD----SER  366 (546)
Q Consensus       302 ----------nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~----~~~  366 (546)
                                ..+.|++.|++..|++.|+.+ ++.+...++.+|..|+..++....|.+.|++..|++++.+.    +..
T Consensus       223 iRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~  302 (461)
T KOG4199|consen  223 IRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRT  302 (461)
T ss_pred             eeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence                      345567888999999999988 88999999999999999999999999999999999999873    334


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHc
Q 009036          367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLR  441 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~  441 (546)
                      +.+.++.+|..|+-.++++..||+.|+.+.++.++..    +.+.+.++.++.-|| +.++....+++.|+-...++.|+
T Consensus       303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk  382 (461)
T KOG4199|consen  303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK  382 (461)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence            5578889999999999999999999999999988753    448899999999999 68889999999999999999998


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          442 KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       442 ~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      ... ....+|.+|+..+.|+...+...+..+...| ++.|+.......+.+...|..+|+-|--
T Consensus       383 ahP-~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  383 AHP-VAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             hCc-HHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            853 4467899999999999988877888777766 7888888888889999999999998743

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=7.8e-13  Score=129.39  Aligned_cols=267  Identities=17%  Similarity=0.266  Sum_probs=220.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChH
Q 009036          237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII--SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVP  313 (546)
Q Consensus       237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~  313 (546)
                      .+++...-.+++..|..+....+.    +..+.++..++.+|.  .++.++-...+..+..-+. ++.||..+++.++++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            455667778899999888876544    456678899999886  3566666666777766555 688999999999999


Q ss_pred             HHHHHHc-cCCHHHHHHHHHHHhhcccccch----------hhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC
Q 009036          314 PIVDVLM-AGSAEAQEHACGAIFSLALDDQN----------KTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLV  381 (546)
Q Consensus       314 ~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~----------k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~  381 (546)
                      .+...|. .+...+...+.+++..|..+++.          ...|...|++..|++.|+.. ++.....+..+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9997665 55557888899999998877643          44556678899999999874 688888999999999999


Q ss_pred             chhHHHHHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          382 KSNRTKLVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      ++.++.+++.|++..|++++.+.+      ....++.+|..|+..+..+..|++.|+.+.++.++.... +++.+.+.++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-DDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-CChHHHHHHH
Confidence            999999999999999999998732      556799999999999999999999999999999987754 5788999999


Q ss_pred             HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCc
Q 009036          456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~  508 (546)
                      .++.-||-..++....+.+.|+-...++-++..  ...++++|.+++++|.....
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~  406 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA  406 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence            999999998888888888999888888876655  45578999999999976543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=6.5e-13  Score=130.49  Aligned_cols=193  Identities=20%  Similarity=0.233  Sum_probs=168.8

Q ss_pred             hhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch
Q 009036          265 LCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN  343 (546)
Q Consensus       265 l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~  343 (546)
                      +.+++-+..|+.+|.. .|+.+++.|+.++.|.+..+.++..|.+.|+++.+..+|.++++.++..|+.+|.+|+...++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            3566778999999985 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          344 KTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       344 k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      +..|..  .++.+++.+.+.  +..++..++.+|.||+..++++..+..  .++.|+.+|..++  ++..++++|.||+.
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            888754  477777765543  678889999999999988877776654  6999999998866  88899999999999


Q ss_pred             CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          420 CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       420 ~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ++.....++.+.+...++.++...  .+.+....++.+..++..
T Consensus       164 np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  164 NPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINE  205 (254)
T ss_pred             CHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHH
Confidence            999999999999999999999885  346777888888888865

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.53  E-value=1.7e-13  Score=153.13  Aligned_cols=286  Identities=22%  Similarity=0.258  Sum_probs=221.7

Q ss_pred             hhHHHHHHhcCCC---CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHH---HHH-------ccC------C-HHHH
Q 009036          227 EQEDYFVQKLKSP---QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALR---SLI-------ISR------Y-TNVQ  286 (546)
Q Consensus       227 ~~i~~lv~~L~s~---~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv---~lL-------~s~------~-~~v~  286 (546)
                      +-++.|++.|...   +.+.+..|-..|.++....++.+..=.+..++++|-   ..+       ...      + .+=+
T Consensus       235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~  314 (2195)
T KOG2122|consen  235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ  314 (2195)
T ss_pred             cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence            4457788888544   456788889999998887664433333333333332   222       111      1 1223


Q ss_pred             H-HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-----C-------CHHHHHHHHHHHhhccccc-chhhHHh-hcC
Q 009036          287 V-NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-----G-------SAEAQEHACGAIFSLALDD-QNKTAIG-VLG  351 (546)
Q Consensus       287 ~-~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-----~-------~~~~~~~Aa~~L~~Ls~~~-~~k~~i~-~~g  351 (546)
                      . .|+.+|..++.+++.|..+.+.|++..|.++|+.     +       ...+|.+|..+|.||.+.+ .||..+. ..|
T Consensus       315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            3 5777889999999999999999999999998752     1       3468999999999999987 5677774 589


Q ss_pred             ChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHH-hcCcHHHHHHHHhC---chHHHHHHHHHHHhhC-CcccHH
Q 009036          352 ALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNRTKLV-KLGSVNALLGMVNS---GHMTGRVLLILGNLAS-CSDGRV  425 (546)
Q Consensus       352 ~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv-~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~-~~e~r~  425 (546)
                      .++.||..|.+...++....+.+|.||+. .+.|-++++ +.|-|..|+..-..   .......|.+||||+. |.+|+.
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            99999999999888998999999999997 344555554 55999999887543   2377889999999985 789999


Q ss_pred             HHHh-CCcHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036          426 AVLD-SGGVECLVGMLRKG-TELSESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML  500 (546)
Q Consensus       426 ~i~~-~g~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL  500 (546)
                      .|.. .|++..||.+|.-. ......+.|.|-+||.++..   ..+.++++.++.+++..|+..+++.+-.+.-++.+.|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            9998 78999999999763 22346788999999999976   4678999999999999999999999999999999999


Q ss_pred             HHhhcCCccccc
Q 009036          501 ELMKGRAEEEEE  512 (546)
Q Consensus       501 ~~L~~~~~~~~~  512 (546)
                      |+|......+++
T Consensus       555 WNLSAR~p~DQq  566 (2195)
T KOG2122|consen  555 WNLSARSPEDQQ  566 (2195)
T ss_pred             hhhhcCCHHHHH
Confidence            999977766553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.49  E-value=4.6e-12  Score=124.47  Aligned_cols=192  Identities=21%  Similarity=0.227  Sum_probs=169.8

Q ss_pred             CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH
Q 009036          225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      +...++.|+..|+ +.++.+|+.++..+.+.+.. +.++..+.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+|+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            4577899999997 55899999999999998764 689999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          304 MLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      ..|..  .++.+++.+.+.  +.+++..+.++|.+|+..+++...+.  +.++.|+.+|..++..++..++++|.||+.+
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            88753  588888765554  78999999999999999888877775  4799999999999999999999999999999


Q ss_pred             chhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCc
Q 009036          382 KSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCS  421 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~  421 (546)
                      +.+...++.++++..++.++...   ++...++..+.||..+-
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999764   37778899999987643

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.44  E-value=7.9e-11  Score=127.92  Aligned_cols=278  Identities=19%  Similarity=0.172  Sum_probs=223.7

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ...+.+...|.++++.++.-+++.|.+++.+++.....+.+.++++.++.++.++|..+...|+.+|.+|+..+.....+
T Consensus        77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence            45678888999999999999999999999988877788889999999999999999999999999999999988888888


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                      ...+.+..|..++...+..+|..+..++.+++... +....+...|.++.++..|+++|.-++.+|+.+|..|+..+.+.
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~  236 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL  236 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence            88888999999999888889999999999998665 55666777899999999999999999999999999999988999


Q ss_pred             HHHHhcCcHHHHHHHHhCch--------HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          386 TKLVKLGSVNALLGMVNSGH--------MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--------~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      ..+.+.|+++.|+.++.+..        ..-..+....+++....  ..+.+  ...+..|..++.+   .+...+..|+
T Consensus       237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~--~~v~~~~p~~~~~l~~~~~s---~d~~~~~~A~  311 (503)
T PF10508_consen  237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP--QEVLELYPAFLERLFSMLES---QDPTIREVAF  311 (503)
T ss_pred             HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHhCC---CChhHHHHHH
Confidence            99999999999999997532        22334567777776411  12221  2344455555555   4678899999


Q ss_pred             HHHHHHhcCChhhHHH-HHHCCc----HHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036          456 SVLYALSHGGLRFKGL-AAAAGM----AEVLMRMERVGSEHVKEKAKRMLELMKGRAEE  509 (546)
Q Consensus       456 ~~L~~L~~~~~~~~~~-~~~~g~----v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~  509 (546)
                      .+|..+|...++...+ ....+.    +..+.....++..++|.++...|..+-....+
T Consensus       312 dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~  370 (503)
T PF10508_consen  312 DTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD  370 (503)
T ss_pred             HHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence            9999999766555545 333333    44455557778899999999999999655443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.37  E-value=7.5e-11  Score=127.66  Aligned_cols=281  Identities=18%  Similarity=0.116  Sum_probs=213.4

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      -+.|..||.+|.+.+.++|..|+.+|++|...+..  |+..+.+.++|+.|+.+|.. .|.++++.+..+|.||+..+..
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l  353 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL  353 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence            46788999999999999999999999999987665  99999999999999999986 7889999888888888765433


Q ss_pred             HHH-------------------------------------------------------HHh-cCChHHHHHHHcc-----
Q 009036          303 KML-------------------------------------------------------IVR-SGLVPPIVDVLMA-----  321 (546)
Q Consensus       303 k~~-------------------------------------------------------i~~-~g~l~~Lv~lL~~-----  321 (546)
                      |..                                                       +.+ .|.|..|+..++.     
T Consensus       354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~  433 (717)
T KOG1048|consen  354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS  433 (717)
T ss_pred             HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence            332                                                       222 3778888887762     


Q ss_pred             -CCHHHHHHHHHHHhhcccccc------h--------------------------hhH---------Hh-----------
Q 009036          322 -GSAEAQEHACGAIFSLALDDQ------N--------------------------KTA---------IG-----------  348 (546)
Q Consensus       322 -~~~~~~~~Aa~~L~~Ls~~~~------~--------------------------k~~---------i~-----------  348 (546)
                       -+....+++..+|.||+.--+      .                          +..         |-           
T Consensus       434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~  513 (717)
T KOG1048|consen  434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW  513 (717)
T ss_pred             cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence             267788999999999964311      0                          000         00           


Q ss_pred             --hcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCc-----hhHHHH-HhcCcHHHHHHHHhCch--HHHHHHHHHHHh
Q 009036          349 --VLGALPPLLHLLK-SDSERTQHDSALALYHLSLVK-----SNRTKL-VKLGSVNALLGMVNSGH--MTGRVLLILGNL  417 (546)
Q Consensus       349 --~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~-----~n~~~i-v~~Gav~~Lv~lL~~~~--~~e~al~~L~nL  417 (546)
                        ...++..-+.+|. +.+..+.+.++.+|-||+...     ..+..+ ....+.+.|+++|..++  +...+..+|.||
T Consensus       514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl  593 (717)
T KOG1048|consen  514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL  593 (717)
T ss_pred             eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence              0001112123333 246778889999999998632     245555 56689999999998754  899999999999


Q ss_pred             hCCcccHHHHHhCCcHHHHHHHHccCCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHH
Q 009036          418 ASCSDGRVAVLDSGGVECLVGMLRKGTE---LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVK  493 (546)
Q Consensus       418 a~~~e~r~~i~~~g~i~~Lv~lL~~~~~---~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k  493 (546)
                      +....+++.|. ..+++.|++.|..+..   .+++..-.++.+|+++...+.....-+.+.++++.|+.+..+. +++.-
T Consensus       594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~  672 (717)
T KOG1048|consen  594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF  672 (717)
T ss_pred             ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence            99999999887 7899999999988643   3577888889999999877766666677778899999886654 67888


Q ss_pred             HHHHHHHHHhhcCC
Q 009036          494 EKAKRMLELMKGRA  507 (546)
Q Consensus       494 ~~A~~lL~~L~~~~  507 (546)
                      +.|..+|..|=...
T Consensus       673 kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  673 KAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888887775443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.33  E-value=8e-13  Score=92.36  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CcccccccCCCeecCCCccccHHHHHHHHhcCC---CCCCCC
Q 009036           48 CPVSGSLMADPVVVSSGHTFERACAHVCKTLGF---TPTLVD   86 (546)
Q Consensus        48 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~---~~cp~~   86 (546)
                      ||||+++|+|||+++|||+||+.||++|++...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999887532   368865

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.30  E-value=6.6e-10  Score=120.76  Aligned_cols=274  Identities=17%  Similarity=0.138  Sum_probs=215.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH-HHHhcC
Q 009036          232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM-LIVRSG  310 (546)
Q Consensus       232 lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~-~i~~~g  310 (546)
                      +...|.+.+.+....++..|..+..... ....  ..+..+.|...|.++++.++..++..|.++..+.+... .+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            7777877777777888888888776432 1111  45778999999999999999999999999988766544 445779


Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHH
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLV  389 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv  389 (546)
                      .++.++..|.+++.++...|+.+|..|+.....-..+...+.+..|..++...+..++..+..++.+++.. ++....+.
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999998887766777777899999999887888888899999999875 45566666


Q ss_pred             hcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCH-H---HHHHHHHHHHHHhc
Q 009036          390 KLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSE-S---TQESCVSVLYALSH  463 (546)
Q Consensus       390 ~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~-~---~~e~Av~~L~~L~~  463 (546)
                      ..|+++.++..|.+.+  ++..|+.+|..|+..+.|...+.+.|+++.|+.++.... .++ -   .--..+....+++.
T Consensus       200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g~~~f~g~la~  278 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPGRMKFFGNLAR  278 (503)
T ss_pred             hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhhHHHHHHHHHh
Confidence            6799999999999877  788999999999999999999999999999999998853 223 1   11122234444544


Q ss_pred             C-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          464 G-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       464 ~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      . ...+..  .-+..+..|..++.+.++..+..|...|-.+....++..
T Consensus       279 ~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~  325 (503)
T PF10508_consen  279 VSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ  325 (503)
T ss_pred             cChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence            2 222222  223356677788889999999999999999987765544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.21  E-value=8.2e-12  Score=114.94  Aligned_cols=63  Identities=24%  Similarity=0.335  Sum_probs=54.0

Q ss_pred             CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc---------------CCCCCCCCCCCCCCCCCcccHHH
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL---------------GFTPTLVDGTTPDFSTVIPNLAL  101 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~---------------~~~~cp~~~~~~~~~~l~pn~~l  101 (546)
                      ..+..++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+..+....++|.+.-
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr   89 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR   89 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence            3466688999999999999999999999999999999842               12379999999998899998643

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.5e-09  Score=110.90  Aligned_cols=293  Identities=16%  Similarity=0.225  Sum_probs=212.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      .+.+..||+.|.-++.+.-.-.+.-|..|+-. .+|+.-+.+.|.|+.|+++....+++++...+..|.||+.+..++.+
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K  381 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK  381 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence            35567788888777777777777788887765 47899999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCchh
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                      ++..|.+|.|+.+|.+...  ...|...|..++.++..|..+.-...++.|.+.+-.+ +.++-...+....|||.+..|
T Consensus       382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN  459 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN  459 (791)
T ss_pred             HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence            9999999999999987643  3458889999999999999998888999998877654 444544444455678777776


Q ss_pred             HHHHHhcCcHHHHHHH------------HhC-----c-----------------------hHHHHHHHHHHHhhCC----
Q 009036          385 RTKLVKLGSVNALLGM------------VNS-----G-----------------------HMTGRVLLILGNLASC----  420 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~l------------L~~-----~-----------------------~~~e~al~~L~nLa~~----  420 (546)
                      .+.+++..++..|++.            +..     +                       ...-.|+++|.||...    
T Consensus       460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw  539 (791)
T KOG1222|consen  460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW  539 (791)
T ss_pred             ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence            6666655444444331            111     0                       1344588888887652    


Q ss_pred             ---------------------------------------cccHHHHH-hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          421 ---------------------------------------SDGRVAVL-DSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       421 ---------------------------------------~e~r~~i~-~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                                                             .+....+. .++.|+.++++|.... .+++..-..+.+...
T Consensus       540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q-eDDEfV~QiiyVF~Q  618 (791)
T KOG1222|consen  540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ-EDDEFVVQIIYVFLQ  618 (791)
T ss_pred             HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc-ccchHHHHHHHHHHH
Confidence                                                   11122333 4678888888887754 334444455555555


Q ss_pred             HhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc-------cc---ccCChHHHHhc
Q 009036          461 LSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE-------EE---EGVDWDELLDS  522 (546)
Q Consensus       461 L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~-------~~---~~~~~~~~~~~  522 (546)
                      +..+....+-++.+...-.-|+.++++.+..+|+.+--+|-.+.....+       +.   ...+|-+|.++
T Consensus       619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~EkFrwHNsQWLeMVEs  690 (791)
T KOG1222|consen  619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEKFRWHNSQWLEMVES  690 (791)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccchhHHHHHHHH
Confidence            5555434444556666667899999999999999999888888765432       11   45567666663

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.17  E-value=5.4e-10  Score=96.73  Aligned_cols=117  Identities=33%  Similarity=0.336  Sum_probs=106.8

Q ss_pred             HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc
Q 009036          264 SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ  342 (546)
Q Consensus       264 ~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~  342 (546)
                      .+++.|+++.|+.+|.+.+..++..++.+|.+++.. ++....+.+.|+++.|+.+|.+.+++++..|+++|.+|+....
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            356789999999999999999999999999999997 7888888899999999999999999999999999999998764


Q ss_pred             -hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          343 -NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       343 -~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                       ....+...|+++.|+++|.+++.++++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence             46666778999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.16  E-value=3.8e-11  Score=123.62  Aligned_cols=72  Identities=15%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      ..+...|.||||.++|++||+++|||+||..||.+|+... ..||.|+..+....+.+|..|.++|+.|....
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            3566889999999999999999999999999999998753 47999999988778999999999999996543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.15  E-value=7.5e-10  Score=95.82  Aligned_cols=115  Identities=28%  Similarity=0.415  Sum_probs=103.4

Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK-  382 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-  382 (546)
                      .+.+.|+++.|+.+|++++.+++..++.+|.+++.. ++....+.+.|+++.|+++|.+++++++..|+++|.+|+... 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            356789999999999999999999999999999988 567777778899999999999999999999999999999866 


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      ..+..++..|+++.|++++.+.+  +++.++.+|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            56777888899999999998754  89999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.13  E-value=4.8e-09  Score=106.10  Aligned_cols=283  Identities=17%  Similarity=0.145  Sum_probs=209.0

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc----CC---HHHHHHHHHHHHHhh
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS----RY---TNVQVNAVAALVNLS  297 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s----~~---~~v~~~A~~~L~nLs  297 (546)
                      +.+.++.|.+...|++.++.++..+.|.+++..+.++|..+.+.|+-..++.+|+.    ++   .+....+...|.|-.
T Consensus        85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            35667777777788889999999999999999999999999999997777776652    33   345556677888877


Q ss_pred             cC-CchHHHHHhcCChHHHHHHHccC----------------------------------------------CHHHHHHH
Q 009036          298 LE-KINKMLIVRSGLVPPIVDVLMAG----------------------------------------------SAEAQEHA  330 (546)
Q Consensus       298 ~~-~~nk~~i~~~g~l~~Lv~lL~~~----------------------------------------------~~~~~~~A  330 (546)
                      .+ ++-+.++++.|+++.|..++.-+                                              .+.+.+..
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~  244 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI  244 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence            75 56788888899988776443211                                              11223333


Q ss_pred             HHHHhhcccccchhhHHhhcCChHHHHHhhcc-CCH-------HHHHHHHHHHHHhhcCchhHHHHHhcC-cHHHHHHHH
Q 009036          331 CGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSE-------RTQHDSALALYHLSLVKSNRTKLVKLG-SVNALLGMV  401 (546)
Q Consensus       331 a~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~-------~~~~~A~~aL~~Ls~~~~n~~~iv~~G-av~~Lv~lL  401 (546)
                      ..+|...+.++..|-.+.+.|.++.++++++. .+.       ...+.++....-|...++.-.++...+ .++.++.-+
T Consensus       245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence            34455555666667777788889999998876 211       222333333333444455556666665 788888888


Q ss_pred             hCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCc
Q 009036          402 NSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG--TELSESTQESCVSVLYALSHGGLRFKGLAAAAGM  477 (546)
Q Consensus       402 ~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~--~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~  477 (546)
                      .+.+  ..-...-+|.|+++.++....+++.+.+..|+..|...  ..++-+.+..++++|.++.--- ..+..+..+|+
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGv  403 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGV  403 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccch
Confidence            7654  56666778899999999999999999999999988762  2345677888999999997632 34667788999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          478 AEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       478 v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      .+.++.+++...|++.-+-...|+++....+
T Consensus       404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            9999999999999999999999999887665

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1.2e-09  Score=111.62  Aligned_cols=176  Identities=20%  Similarity=0.236  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH
Q 009036          287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER  366 (546)
Q Consensus       287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~  366 (546)
                      ..|+-.|.||+.+-....++.+...+..||..|...+.++.......|..|+...++|..+.+.|.++.|++++...+++
T Consensus       281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d  360 (791)
T KOG1222|consen  281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD  360 (791)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence            45667789999988888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036          367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL  446 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~  446 (546)
                      .++..+..|+||+....++.+||..|.+|.|+.+|.+..-..-|+.+|..++-....+..+....+|+.+++.+..+.  
T Consensus       361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~--  438 (791)
T KOG1222|consen  361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGT--  438 (791)
T ss_pred             HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            999999999999999999999999999999999998877677799999999998888888889999999999988763  


Q ss_pred             CHHHHHHHHHHHHHHhcC
Q 009036          447 SESTQESCVSVLYALSHG  464 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~  464 (546)
                      +.++....++.-.+||..
T Consensus       439 ~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  439 GSEVDLALIALCINLCLN  456 (791)
T ss_pred             CceecHHHHHHHHHHHhc
Confidence            223322223333566653

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.09  E-value=1.6e-08  Score=105.95  Aligned_cols=275  Identities=14%  Similarity=0.095  Sum_probs=203.9

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ....++..|...+.-++..|+..|..+...+..+.......-.+..|...|.+. +...+..++.+|..|...+..|..+
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f  181 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF  181 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence            356677788888899999999999988765432211111111344566666654 5777888889999999999999999


Q ss_pred             HhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCc-
Q 009036          307 VRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVK-  382 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~-  382 (546)
                      .+.++++.|+.+|+..  +.+++-+++-+++-|+..++........+.|+.|+++++.. ..++.+.++.+|.||.... 
T Consensus       182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~  261 (429)
T cd00256         182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV  261 (429)
T ss_pred             HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence            9888999999999864  57889999999999999988766666689999999999874 6778899999999998743 


Q ss_pred             ------hhHHHHHhcCcHHHHHHHHhC----chH-------HHHHHHHHHHhhCC------------------------c
Q 009036          383 ------SNRTKLVKLGSVNALLGMVNS----GHM-------TGRVLLILGNLASC------------------------S  421 (546)
Q Consensus       383 ------~n~~~iv~~Gav~~Lv~lL~~----~~~-------~e~al~~L~nLa~~------------------------~  421 (546)
                            .....|+..|+.+.+-.+...    +++       .+.--..+..|++.                        .
T Consensus       262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence                  245677887877766555443    222       12222222333321                        2


Q ss_pred             ccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHH
Q 009036          422 DGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRM  499 (546)
Q Consensus       422 e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~l  499 (546)
                      ||...+-+.+  .+..|+++|..+  .++....-|+.=+..++...+..+.++.+.|+=..+++++.+.++++|..|..+
T Consensus       342 EN~~kf~~~~~~llk~L~~iL~~s--~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a  419 (429)
T cd00256         342 ENADRLNEKNYELLKILIHLLETS--VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLA  419 (429)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcC--CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            4556666544  678999999654  345666667777788888777888999999999999999999999999999999


Q ss_pred             HHHhh
Q 009036          500 LELMK  504 (546)
Q Consensus       500 L~~L~  504 (546)
                      ++.|-
T Consensus       420 vQklm  424 (429)
T cd00256         420 VQKLM  424 (429)
T ss_pred             HHHHH
Confidence            98764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=99.07  E-value=9.9e-09  Score=103.00  Aligned_cols=221  Identities=15%  Similarity=0.102  Sum_probs=128.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHH-HccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSL-IISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~l-L~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .++.+.+.+++.++.+|..|++.|..+......      ....++.|..+ +.++++.++..|+.+|.++.......   
T Consensus        55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---  125 (280)
T PRK09687         55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---  125 (280)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence            344455555566666666666666655432110      11245555554 44556666666666666654321110   


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                       ...++..+...+.+.+..+|..|+.+|..+          ....+++.|+.+|.+.+..++..|+.+|.++....    
T Consensus       126 -~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~----  190 (280)
T PRK09687        126 -SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN----  190 (280)
T ss_pred             -chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----
Confidence             011234444555555666666666666544          22346677777777777777777777777662211    


Q ss_pred             HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                          ..+++.|+.+|.+.+  ++..|+..|..+-.          ..+++.|++.|..+   +  .+..|+.+|..+-..
T Consensus       191 ----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        191 ----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             ----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence                135666777776544  66666666655321          25678888888773   1  345566666655321


Q ss_pred             ChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 009036          465 GLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLEL  502 (546)
Q Consensus       465 ~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~  502 (546)
                                 .+++.|..++. +.+++++.+|.+.|..
T Consensus       252 -----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 -----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             -----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                       26788888886 7899999999888764

>PRK09687 putative lyase; Provisional

Probab=99.06  E-value=1.7e-08  Score=101.33  Aligned_cols=224  Identities=13%  Similarity=0.053  Sum_probs=167.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      -.+++|+..|.+.+..++..|+..|..+-.           ..+++.+..++.+.++.++..|+.+|..|......    
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            456889999999999999999999976653           35688889999999999999999999998643222    


Q ss_pred             HhcCChHHHHHH-HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          307 VRSGLVPPIVDV-LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       307 ~~~g~l~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                       ....++.|..+ +++.++.+|..|+.+|.++.......    ...+++.|...+.+++..++..|+.+|..+..     
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----  157 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----  157 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence             12357788877 56779999999999999985432211    12245667777888899999999999976532     


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                           ..+++.|+.+|.+.+  ++..|+..|..+....        ..+++.|+.+|.+   .+..++..|+..|..+-.
T Consensus       158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQD---KNEEIRIEAIIGLALRKD  221 (280)
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcC---CChHHHHHHHHHHHccCC
Confidence                 237999999998765  8889999998883321        1466788999977   568899999999876532


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          464 GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       464 ~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      .           .+++.|+..++++.  ++..|...|-.+-
T Consensus       222 ~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        222 K-----------RVLSVLIKELKKGT--VGDLIIEAAGELG  249 (280)
T ss_pred             h-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence            1           26788888888776  4445555555543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.01  E-value=2.4e-08  Score=102.27  Aligned_cols=246  Identities=19%  Similarity=0.176  Sum_probs=163.4

Q ss_pred             HHHHhccChhhhHHhhcC---ChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcCC-chHHHHHh------cCChHHHHHH
Q 009036          251 LRKLTRSREETRVSLCTP---RLLLALRSLII--SRYTNVQVNAVAALVNLSLEK-INKMLIVR------SGLVPPIVDV  318 (546)
Q Consensus       251 L~~La~~~~~~r~~l~~~---g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~------~g~l~~Lv~l  318 (546)
                      |+.+-+.....|..+.+.   +....++.+|.  +.+.++....+..+..|..++ .....+..      .....+++.+
T Consensus        34 ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~l  113 (312)
T PF03224_consen   34 IKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKL  113 (312)
T ss_dssp             HHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHH
Confidence            333333333444444442   23556666665  368888899999998887754 44444433      1367888888


Q ss_pred             HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 009036          319 LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS----DSERTQHDSALALYHLSLVKSNRTKLVKLGSV  394 (546)
Q Consensus       319 L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav  394 (546)
                      +.+++..++..|+.+|..|......+..-...+.++.++..|.+    ++.+.+..|+.+|.+|...++.|..+.+.|++
T Consensus       114 l~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v  193 (312)
T PF03224_consen  114 LDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGV  193 (312)
T ss_dssp             -S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcH
Confidence            99999999999999999998776544333235677888888875    34456688999999999999999999999999


Q ss_pred             HHHHHHH------hCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036          395 NALLGMV------NSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG  465 (546)
Q Consensus       395 ~~Lv~lL------~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~  465 (546)
                      +.|+.+|      ....   +..+++-++|.|+-+++....+.+.+.|+.|+++++..  ..+++..-++++|.|++...
T Consensus       194 ~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~la~l~Nl~~~~  271 (312)
T PF03224_consen  194 SPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS--IKEKVVRVSLAILRNLLSKA  271 (312)
T ss_dssp             HHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcc
Confidence            9999999      2221   78899999999999999999999988999999999986  45888899999999999854


Q ss_pred             h-hhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHH
Q 009036          466 L-RFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKR  498 (546)
Q Consensus       466 ~-~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~  498 (546)
                      . .....+...|+++.|-.|....  ++++.+--..
T Consensus       272 ~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  272 PKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF  307 (312)
T ss_dssp             STTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            3 3666677777666666664433  5555554433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.5e-07  Score=101.49  Aligned_cols=279  Identities=13%  Similarity=0.142  Sum_probs=208.1

Q ss_pred             CchhHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCc
Q 009036          225 SNEQEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      .+++++.|+.++.+.. .++|+.|+..|..+++   ..|..+... ++++|+..|..  .|+++...++.++.++..+++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence            3688999999996554 6899999999999997   456555544 57788888865  489999999999999887542


Q ss_pred             ------h-H----------HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhh-cCChHHHHHhh
Q 009036          302 ------N-K----------MLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGV-LGALPPLLHLL  360 (546)
Q Consensus       302 ------n-k----------~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~l~~Lv~lL  360 (546)
                            + +          +.+. ..+.|..|+..+...+..+|.++..+|.+|....  +.+..+.. +-+|..|+.+|
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                  1 2          1122 4578999999999999999999999999986654  45666654 78999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhhC-CcccHHHHHhCCc
Q 009036          361 KSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLAS-CSDGRVAVLDSGG  432 (546)
Q Consensus       361 ~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa~-~~e~r~~i~~~g~  432 (546)
                      .+....+|.+|+..|..|.....+.+++|.. +++..|..++...      -+.+.|+..|-||-. +..+...|.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            9988888899999999999988888888888 9999999999752      289999999999996 4567777888999


Q ss_pred             HHHHHHHHccCCCCC-------HHHHH---HHHHHHHHHhc-CC-----hhhHHHHHHCCcHHHHHHHHhcC--CHHHHH
Q 009036          433 VECLVGMLRKGTELS-------ESTQE---SCVSVLYALSH-GG-----LRFKGLAAAAGMAEVLMRMERVG--SEHVKE  494 (546)
Q Consensus       433 i~~Lv~lL~~~~~~s-------~~~~e---~Av~~L~~L~~-~~-----~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~  494 (546)
                      ||.|.++|......+       +.-..   .++.++..+.. ++     ..++.++.+.+++..|..++.+.  ..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            999999986532222       22222   23333444433 22     13445778888999999886655  344555


Q ss_pred             HHHHHHHHhhcCC
Q 009036          495 KAKRMLELMKGRA  507 (546)
Q Consensus       495 ~A~~lL~~L~~~~  507 (546)
                      .+.-.+..+-+..
T Consensus       336 esiitvAevVRgn  348 (970)
T KOG0946|consen  336 ESIITVAEVVRGN  348 (970)
T ss_pred             HHHHHHHHHHHhc
Confidence            5544444444433

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.96  E-value=3.6e-10  Score=77.93  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=32.6

Q ss_pred             CcccccccCCC-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 009036           48 CPVSGSLMADP-VVVSSGHTFERACAHVCKTLGFTPTLVD   86 (546)
Q Consensus        48 CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~   86 (546)
                      ||||.+.++|| |+++|||+||+.||++|++. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999987 5678865

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.9e-10  Score=105.00  Aligned_cols=78  Identities=26%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             CCCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           38 QTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        38 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      .+.++|+.++|.|+.++|+|||++|+|.||+|.-|+..+..-..-.|+++.++....++||++|+..|..|...|.|.
T Consensus       204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~  281 (284)
T KOG4642|consen  204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA  281 (284)
T ss_pred             ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence            357899999999999999999999999999999999999876666778899999999999999999999999999874

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.87  E-value=4.1e-07  Score=105.82  Aligned_cols=228  Identities=15%  Similarity=0.092  Sum_probs=142.0

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      +...++.|+..|++.++.+|..|+..|..+..           .++++.|+.+|.+++..++..|+.+|..+....    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence            46677899999999999999999999987643           357899999999999999999998887763211    


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-----------ch--h----hHHhhcCChHHHHHhhccCCHHH
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-----------QN--K----TAIGVLGALPPLLHLLKSDSERT  367 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-----------~~--k----~~i~~~g~l~~Lv~lL~~~~~~~  367 (546)
                           ...+.|...|.+.++.+|..|+.+|..+...+           +.  +    ..++..+..+.|..++.+++..+
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                 12245556666666777777766665542110           00  0    00000112233444444444555


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCC
Q 009036          368 QHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTE  445 (546)
Q Consensus       368 ~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~  445 (546)
                      +..++.+|..+...        ....++.|..++.+++  ++..|+..|..+...+         ..+..|+..|.+   
T Consensus       759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d---  818 (897)
T PRK13800        759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRA---  818 (897)
T ss_pred             HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcC---
Confidence            55555554444221        1123566777776544  6666776666653321         122446666665   


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036          446 LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM  503 (546)
Q Consensus       446 ~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L  503 (546)
                      .+..++..|+.+|..+...           ..++.|+.++.+.+..+|..|...|..+
T Consensus       819 ~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        819 SAWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             CChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            3466777777777665322           2457888888888888888888888776

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.84  E-value=1.4e-09  Score=75.87  Aligned_cols=31  Identities=26%  Similarity=0.697  Sum_probs=21.9

Q ss_pred             CcccccccCC----CeecCCCccccHHHHHHHHhcC
Q 009036           48 CPVSGSLMAD----PVVVSSGHTFERACAHVCKTLG   79 (546)
Q Consensus        48 CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~   79 (546)
                      ||||.+ |.+    |++|+|||+||+.||+++++.+
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            999999 999    9999999999999999998754

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.83  E-value=2.8e-07  Score=93.59  Aligned_cols=279  Identities=15%  Similarity=0.056  Sum_probs=199.6

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-C-------CHHHHHHHHHHHHHh
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-R-------YTNVQVNAVAALVNL  296 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~-------~~~v~~~A~~~L~nL  296 (546)
                      +.+....+++.|.+.-.+...+-+-.+..-+.+++..+-.++++|.+.-++.++.. .       ....-..++..+.-|
T Consensus       221 d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll  300 (604)
T KOG4500|consen  221 DCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL  300 (604)
T ss_pred             cchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence            34556677777755543334444444444555678899999999999999999874 1       123334555666666


Q ss_pred             hcCCchHHHHHhcC-ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc-----CCHHHHHH
Q 009036          297 SLEKINKMLIVRSG-LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS-----DSERTQHD  370 (546)
Q Consensus       297 s~~~~nk~~i~~~g-~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-----~~~~~~~~  370 (546)
                      ...++...++...+ +++.++..+.+.+......++-+|.|++..+++...+.+.+.+..|+.+|..     ++.+.+..
T Consensus       301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA  380 (604)
T KOG4500|consen  301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA  380 (604)
T ss_pred             hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence            77777777777666 8999999999999999999999999999999999999999999999999854     47788889


Q ss_pred             HHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc-cHHHHHhC-CcHHHHHHHHccCCCC
Q 009036          371 SALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSD-GRVAVLDS-GGVECLVGMLRKGTEL  446 (546)
Q Consensus       371 A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e-~r~~i~~~-g~i~~Lv~lL~~~~~~  446 (546)
                      ++.+|+||...-.|+..+..+|++..++.++..  +.++-+-++.|..+-...+ ...++..+ ..+..|++--++.  +
T Consensus       381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~--D  458 (604)
T KOG4500|consen  381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSP--D  458 (604)
T ss_pred             HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCC--c
Confidence            999999999999999999999999999999875  4477777777776654333 22223322 2444555444442  1


Q ss_pred             CHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          447 SESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      -..+.-...+.|..+-.++  .++...+-+.|+++.++.++....-..+..|.-+|..+..
T Consensus       459 ~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  459 FAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             cchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            1223334455555555543  2333445567889999999888877777777777776654

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.79  E-value=3.9e-09  Score=73.65  Aligned_cols=39  Identities=28%  Similarity=0.536  Sum_probs=35.4

Q ss_pred             CcccccccCCCe-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 009036           48 CPVSGSLMADPV-VVSSGHTFERACAHVCKT-LGFTPTLVD   86 (546)
Q Consensus        48 CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~-~~~~~cp~~   86 (546)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 556689875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=6.4e-07  Score=97.48  Aligned_cols=258  Identities=17%  Similarity=0.147  Sum_probs=194.7

Q ss_pred             hhHHHHHHhcCCC-CHHHHHHHHHHHHHHh-ccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-Cch
Q 009036          227 EQEDYFVQKLKSP-QVHEVEEALISLRKLT-RSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La-~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..+..|+..|... ++-.|.+|+..|.++. ..+++.-..+--.-++|.|+.+|... +.+++-.|+++|.+|+.. +..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4678889988655 8889999999999754 34443333333456899999999864 789999999999999985 788


Q ss_pred             HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          303 KMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      ...+++.++||.|+.-|..- -.++-+.++.+|..++....  ..|.+.|+|...+..|.--+..+++.|+.+-.|.|..
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888999999999977654 67889999999999987543  3466789999999998877788999999999999972


Q ss_pred             --chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCC-CCHHHHH
Q 009036          382 --KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTE-LSESTQE  452 (546)
Q Consensus       382 --~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~-~s~~~~e  452 (546)
                        .+.-.-+++  ++|.|..+|...+  ..|.++-++..++.    .++--+++..+|.|..+.++|....+ -+.....
T Consensus       325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence              222223333  6999999998644  66777777776664    44556677789999999999876421 1334556


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036          453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG  488 (546)
Q Consensus       453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~  488 (546)
                      -.+..|..+|.+.+-........++...|..++..-
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            677778888888665566666677788888877654

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.77  E-value=3e-09  Score=79.27  Aligned_cols=43  Identities=28%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CceeCcccccccCCCeec-CCCccccHHHHHHHHhc-CCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTL-GFTPTLVD   86 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~-~~~~cp~~   86 (546)
                      ..|.||||+..|+|||+. .|||+|+|++|.+|+.. +...||..
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~   54 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA   54 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence            468999999999999995 99999999999999954 34478874

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.76  E-value=3.5e-07  Score=93.69  Aligned_cols=222  Identities=18%  Similarity=0.150  Sum_probs=161.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc------CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT------PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~------~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      -.+++.+ +.+.+...-.+..|..+..+++.....+.+      .....+++.++.++|..++..|+.+|..|......+
T Consensus        61 l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~  139 (312)
T PF03224_consen   61 LNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR  139 (312)
T ss_dssp             -HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred             HHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence            3555555 567888888999999998888766666654      125777888999999999999999999988754333


Q ss_pred             HHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc-----c--CCHHHHHHHH
Q 009036          304 MLIVRSGLVPPIVDVLMA----GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-----S--DSERTQHDSA  372 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~-----~--~~~~~~~~A~  372 (546)
                      ..-...+.++.++..|.+    .+.+.+..++.+|.+|...+++|..+.+.++++.|+.+|.     +  .+.+..-.++
T Consensus       140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l  219 (312)
T PF03224_consen  140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQAL  219 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence            322224567888888775    3456778999999999999999999999999999999992     2  2556777899


Q ss_pred             HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcc--cHHHHHhCCcHHHHHHHHccCCCCC
Q 009036          373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSD--GRVAVLDSGGVECLVGMLRKGTELS  447 (546)
Q Consensus       373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e--~r~~i~~~g~i~~Lv~lL~~~~~~s  447 (546)
                      .++|-|+.+++....+...+.|+.|++++...   .+..-++++|.||.....  ....++..|+++.+-.+..+. ..+
T Consensus       220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk-~~D  298 (312)
T PF03224_consen  220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK-WSD  298 (312)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS---SS
T ss_pred             HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC-CCC
Confidence            99999999999999999999999999999763   277889999999998776  778888877776665555542 345


Q ss_pred             HHHHHH
Q 009036          448 ESTQES  453 (546)
Q Consensus       448 ~~~~e~  453 (546)
                      ++..+-
T Consensus       299 edl~ed  304 (312)
T PF03224_consen  299 EDLTED  304 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.76  E-value=1.9e-09  Score=80.31  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             CceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTI  105 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i  105 (546)
                      +-++|++|.++|++||.+ .|.|.||+.||.+.+..   -||+|..+-...++.-|..|.++|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            346899999999999975 99999999999775442   499999998888999999998886

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.71  E-value=6.1e-09  Score=101.65  Aligned_cols=69  Identities=14%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCH  110 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~  110 (546)
                      .+..-++|-||.++|+-||++|||||||.-||.+++. ....||.|..+..+..|+-|+.|..+|+.+-.
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            4557789999999999999999999999999999886 44568889888899999999999999998843

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.67  E-value=3.4e-06  Score=98.20  Aligned_cols=227  Identities=17%  Similarity=0.088  Sum_probs=150.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-----
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-----  300 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-----  300 (546)
                      ...++.|+..|++.++.++..|+..|..+....          ...+.|..+|.++++.++..|+.+|..+....     
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~  720 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA  720 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence            456788999999999999999999998774321          11245556666666667666666665442110     


Q ss_pred             ------c--hHHH----HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHH
Q 009036          301 ------I--NKML----IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ  368 (546)
Q Consensus       301 ------~--nk~~----i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~  368 (546)
                            +  .|..    +.+.+..+.|...|.+.++++|..++.+|..+...        ....++.|..+++++++.++
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR  792 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVR  792 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHH
Confidence                  0  0000    00011223344445555555555555555544221        12247889999999999999


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC
Q 009036          369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL  446 (546)
Q Consensus       369 ~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~  446 (546)
                      ..|+.+|.++....         .++..|+..|.+.+  ++..|+.+|..+..          ...++.|+.+|.+   .
T Consensus       793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D---~  850 (897)
T PRK13800        793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTD---P  850 (897)
T ss_pred             HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcC---C
Confidence            99999998874321         12356778887765  88889999876542          3466899999988   5


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036          447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL  502 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~  502 (546)
                      +..++..|+.+|..+- .++         ...+.|...+.+.++.+|..|...|..
T Consensus       851 ~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        851 HLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            6899999999998762 111         145678889999999999999998863

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.61  E-value=4.2e-06  Score=85.28  Aligned_cols=270  Identities=13%  Similarity=0.061  Sum_probs=200.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCC----hHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036          229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPR----LLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g----~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      ....++.|...++-.+..+.+.|..++..+...    .+.+    ....|..++.+ .+.+....|+.+|-.+...++.|
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR  191 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR  191 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence            467788888888877877888888877654311    1111    23344555655 56677777888999999999999


Q ss_pred             HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 009036          304 MLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL  380 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~  380 (546)
                      ..++...++..++.+|.++  +..++-+.+-.++-|+.++...+.+...+.|+.|.+++++. ..++.+..+.++.|++.
T Consensus       192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~  271 (442)
T KOG2759|consen  192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD  271 (442)
T ss_pred             heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998433  78999999999999999988888887789999999999875 66788899999999988


Q ss_pred             Cc-------hhHHHHHhcCcHHHHHHHHhC----ch-------HHHHHHHHHHHhhCC----------------------
Q 009036          381 VK-------SNRTKLVKLGSVNALLGMVNS----GH-------MTGRVLLILGNLASC----------------------  420 (546)
Q Consensus       381 ~~-------~n~~~iv~~Gav~~Lv~lL~~----~~-------~~e~al~~L~nLa~~----------------------  420 (546)
                      ..       ..+..|+..++.+.+-.+...    .+       +++.--.-...|++.                      
T Consensus       272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~  351 (442)
T KOG2759|consen  272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK  351 (442)
T ss_pred             cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence            65       344566776766666555543    22       222222222233331                      


Q ss_pred             --cccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHH
Q 009036          421 --SDGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA  496 (546)
Q Consensus       421 --~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A  496 (546)
                        .+|...+-+.+  .+..|+++|...  .++..-.-|+.=+....+..++.+.++.+-|+-+.++.++.+.++++|-+|
T Consensus       352 FW~eNa~rlnennyellkiL~~lLe~s--~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A  429 (442)
T KOG2759|consen  352 FWRENADRLNENNYELLKILIKLLETS--NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA  429 (442)
T ss_pred             hHHHhHHHHhhccHHHHHHHHHHHhcC--CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence              23455565544  788999999885  345555666666677777777889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 009036          497 KRMLELMK  504 (546)
Q Consensus       497 ~~lL~~L~  504 (546)
                      ..+++.|-
T Consensus       430 LlavQ~lm  437 (442)
T KOG2759|consen  430 LLAVQKLM  437 (442)
T ss_pred             HHHHHHHH
Confidence            99998764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.2e-06  Score=84.97  Aligned_cols=182  Identities=19%  Similarity=0.177  Sum_probs=148.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHH
Q 009036          237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPI  315 (546)
Q Consensus       237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~L  315 (546)
                      .+.+.+.++.|+..|..+... -.|-..+...|++..|+..+.+.+.++++.|+++|...+.+ +..+..+.+.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            456789999999999999874 56778889999999999999999999999999999998885 8899999999999999


Q ss_pred             HHHHccC-CHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhcC-chhHHHHHh
Q 009036          316 VDVLMAG-SAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKS--DSERTQHDSALALYHLSLV-KSNRTKLVK  390 (546)
Q Consensus       316 v~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~--~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~  390 (546)
                      +.+|.+. +..++..|..++.+|..+.. ....+...++...|..+|.+  .+...+..++..|..|... ...+..+-.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999866 66788999999999988764 46666667789999999998  5788889999999998763 344554445


Q ss_pred             cCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          391 LGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       391 ~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      .|....+..+....+  ..+.++..+..+..
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            577777777776543  67777766655543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.8e-08  Score=101.14  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=61.5

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      ...+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+.++++.....+...
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~   80 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR   80 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence            4568899999999999999999999999999999887 5568999986 333 7889999999999988766543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=9.5e-06  Score=81.66  Aligned_cols=181  Identities=21%  Similarity=0.261  Sum_probs=148.4

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHH
Q 009036          280 SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLH  358 (546)
Q Consensus       280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~  358 (546)
                      +.+.+-++.|+.-|..+..+-+|...+...|++.+++..|.+.+.++|..|+++|...+.++ ..+..+.+.|+++.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            45778888899989988888899999999999999999999999999999999999988765 56888889999999999


Q ss_pred             hhccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHh-CC
Q 009036          359 LLKSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLD-SG  431 (546)
Q Consensus       359 lL~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~-~g  431 (546)
                      +|.++ +..++..|+.|+++|-.+ ......+...++...|...+.+++    ++.+++..+..|.........++. .+
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            99875 566779999999999884 456788888888999999998843    788899999999865444333554 56


Q ss_pred             cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          432 GVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      .-..++.+...   .+.+..+.++.++..+..
T Consensus       254 f~~~~~~l~~~---l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  254 FQRVLENLISS---LDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhHHHHHHhhc---cchhhhHHHHHHHHHHHH
Confidence            66666666666   457888999888877654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=1.5e-05  Score=78.21  Aligned_cols=272  Identities=19%  Similarity=0.174  Sum_probs=189.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ...+++..|.+.++.++..|+..+..++..  ..+.... +.-.++.|..++...++  -+.|+.+|.|++.++.-++.+
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            346789999999999999999999888875  2222222 34567888888876666  667999999999999888888


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--c----CChHHHHHh-hccC-CHH-HHHHHHHHHHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--L----GALPPLLHL-LKSD-SER-TQHDSALALYH  377 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~----g~l~~Lv~l-L~~~-~~~-~~~~A~~aL~~  377 (546)
                      ... .+..+++++.+.....-...+.+|.||+.++.....+..  .    .++..|+.. ...+ +.. -....+-.+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            877 888888988887555666788999999998865444422  1    344444444 4333 311 22455668889


Q ss_pred             hhcCchhHHHHHhcCcHH--HHHHHHhCch-H-HHHHHHHHHHhhCCcccHHHHHhC--CcHHHHHHH------------
Q 009036          378 LSLVKSNRTKLVKLGSVN--ALLGMVNSGH-M-TGRVLLILGNLASCSDGRVAVLDS--GGVECLVGM------------  439 (546)
Q Consensus       378 Ls~~~~n~~~iv~~Gav~--~Lv~lL~~~~-~-~e~al~~L~nLa~~~e~r~~i~~~--g~i~~Lv~l------------  439 (546)
                      |+.....|.-+.....++  .|..+-..++ + +...+++|.|.|-.......++..  ..++.|+-=            
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            999888888777765222  2222222122 3 345889999998877777777752  234444322            


Q ss_pred             ---------Hc--cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 009036          440 ---------LR--KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       440 ---------L~--~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~  505 (546)
                               |.  .....++.++..-+.+|..||... ..++.++.-|+.+.|.++-. ..++.+++.+-.+...|-+
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                     21  111146788889999999999754 56788888898888888844 4588899998888888876

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=3.8e-08  Score=92.41  Aligned_cols=58  Identities=28%  Similarity=0.338  Sum_probs=51.8

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHH
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTVIPNLA  100 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~~  100 (546)
                      -..|-|-||++.=+|||++.|||=||=.||-+|+..  +...||+|+...+.+.++|=+.
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            478999999999999999999999999999999974  4457899999899889999764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=5.7e-06  Score=93.50  Aligned_cols=243  Identities=14%  Similarity=0.169  Sum_probs=168.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk  303 (546)
                      ...++.+-.+|.+.+|..|..|+.+|..++..+.+.-.... ..+++.++..|.++++.||..|+.+|..++.+  ++..
T Consensus       347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            34566777888999999999999999999987654332211 45788888899999999999999999999987  4444


Q ss_pred             HHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHH-hhccCCHHHHHHHHHHHHHhh
Q 009036          304 MLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLH-LLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~-lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                      ++. ..-.++.|+..+.+. +++++.+|+.+|.+++..... ..|.  -.+.++.++. ++.++.+.++..++.+|...+
T Consensus       426 k~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  426 KKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            443 344788999999876 899999999999999775433 2222  2456663444 446678999999999999998


Q ss_pred             cCchhHHHHHhcCcHHHHHHHHhCc---h---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHH
Q 009036          380 LVKSNRTKLVKLGSVNALLGMVNSG---H---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQ  451 (546)
Q Consensus       380 ~~~~n~~~iv~~Gav~~Lv~lL~~~---~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~  451 (546)
                      ...+....-.-.-.++.|.++|...   +   ++.+++.++..++ ..-||+.|..  ...+..+..+-.+....+....
T Consensus       504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~  582 (1075)
T KOG2171|consen  504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLR  582 (1075)
T ss_pred             HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchhhccccH
Confidence            7654443333335788888888753   3   3344444443333 3557788775  3466666655422222345677


Q ss_pred             HHHHHHHHHHhc-CChhhHHHH
Q 009036          452 ESCVSVLYALSH-GGLRFKGLA  472 (546)
Q Consensus       452 e~Av~~L~~L~~-~~~~~~~~~  472 (546)
                      ++.+....++|. -.+.+....
T Consensus       583 sy~~~~warmc~ilg~~F~p~L  604 (1075)
T KOG2171|consen  583 SYMIAFWARMCRILGDDFAPFL  604 (1075)
T ss_pred             HHHHHHHHHHHHHhchhhHhHH
Confidence            888888899997 233454443

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.50  E-value=6.8e-08  Score=70.47  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             CceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      +++.|+||++-++|+++++|||. ||..|+.+|++ ....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999988 6668999987653

...

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=5.9e-06  Score=90.21  Aligned_cols=253  Identities=21%  Similarity=0.206  Sum_probs=179.3

Q ss_pred             HHHHHHcc-CCHHHHHHHHHHHHH-hhc-CCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccc-cchhhHH
Q 009036          273 ALRSLIIS-RYTNVQVNAVAALVN-LSL-EKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALD-DQNKTAI  347 (546)
Q Consensus       273 ~Lv~lL~s-~~~~v~~~A~~~L~n-Ls~-~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~-~~~k~~i  347 (546)
                      .|+.=|.. .|+..|-.|+.-|.. |+. +++.-..+.-..++|.|+.+|+.. +.++...|+++|.+|+.. +.....+
T Consensus       171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            33333333 377777777766654 333 233333343456899999999976 899999999999999876 5566667


Q ss_pred             hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCC--cc
Q 009036          348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASC--SD  422 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~--~e  422 (546)
                      .+.++||.|+.-|.. +-.++-+.++.+|-.|+..+  -..+.++|++...+.+|.-  -..+..|+.+..|.|..  ++
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd  328 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD  328 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            788999999987765 56678899999999998743  3567899999999988864  44899999999999973  44


Q ss_pred             cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHHhcC----CHHHHHH
Q 009036          423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRMERVG----SEHVKEK  495 (546)
Q Consensus       423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll~~~----s~~~k~~  495 (546)
                      .-..++  .++|.|-.+|..   .+.+..|.++..+..++.   +.+..-+.+...|.+.....|+...    +..+...
T Consensus       329 ~f~~v~--ealPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  329 EFHFVM--EALPLLTPLLSY---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cchHHH--HHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            444444  567888888877   356778888888888865   3444555566778888888886644    4455666


Q ss_pred             HHHHHHHhhcCCccccccCChHHHHhcCCcccc-ccccCCCCC
Q 009036          496 AKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS-RFRLGYGRG  537 (546)
Q Consensus       496 A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  537 (546)
                      ...+|..|+....     .-+.-+++-++...+ |..++|+-+
T Consensus       404 vIrmls~msS~~p-----l~~~tl~k~~I~~~L~~il~g~s~s  441 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSP-----LLFRTLLKLDIADTLKRILQGYSKS  441 (1051)
T ss_pred             HHHHHHHHccCCh-----HHHHHHHHhhHHHHHHHHHhccCcC
Confidence            6677777776532     234445566666665 667887543

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.48  E-value=1.1e-07  Score=91.82  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CCCceeCcccccccCCC--------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADP--------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dP--------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      ...+..||||++.+.||        |+++|||+||+.||.+|++ ...+||.|+..+.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence            45678999999987764        5679999999999999987 4558999987654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.44  E-value=1.1e-07  Score=91.16  Aligned_cols=71  Identities=14%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      .+..-++|-||.+.++-|++++||||||.-||.+++. .+.-||.|+...++..++-+..++..++.+....
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARNR   91 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence            3456689999999999999999999999999999876 3446999999988888999998999988885443

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.9e-07  Score=83.87  Aligned_cols=53  Identities=17%  Similarity=0.317  Sum_probs=43.0

Q ss_pred             CceeCcccccccCC--CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036           44 GEFLCPVSGSLMAD--PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP   97 (546)
Q Consensus        44 ~~~~CpI~~~~m~d--PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p   97 (546)
                      .-|.||||++-++.  ||.+.|||.||+.||.+.++ ...+||.|++.+....+.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhee
Confidence            44899999999876  55689999999999998877 3448999998777766554

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.38  E-value=3.2e-07  Score=64.71  Aligned_cols=43  Identities=28%  Similarity=0.454  Sum_probs=38.0

Q ss_pred             eCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036           47 LCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTT   89 (546)
Q Consensus        47 ~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~   89 (546)
                      .||||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999999886 999999999999998767789998754

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.38  E-value=1.3e-07  Score=66.94  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=33.1

Q ss_pred             eCcccccccC---CCeecCCCccccHHHHHHHHhcCCCCCCCCC
Q 009036           47 LCPVSGSLMA---DPVVVSSGHTFERACAHVCKTLGFTPTLVDG   87 (546)
Q Consensus        47 ~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~   87 (546)
                      .||||++-|.   +++.++|||.|++.||.+|++.. ..||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence            4999999994   56668999999999999999864 4898874

...

>smart00184 RING Ring finger

Probab=98.37  E-value=3.3e-07  Score=62.34  Aligned_cols=39  Identities=33%  Similarity=0.596  Sum_probs=35.1

Q ss_pred             CcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCC
Q 009036           48 CPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVD   86 (546)
Q Consensus        48 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~   86 (546)
                      ||||++..++|++++|||.||..|+.+|++.+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998555678865

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.35  E-value=3.4e-05  Score=84.69  Aligned_cols=255  Identities=15%  Similarity=0.171  Sum_probs=175.4

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ...++.+.+.|.++++.+|.+|+..+..+.+.+++.-   ... .++.|..+|.+.++.++..|+.++..+...+.....
T Consensus       113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~  188 (526)
T PF01602_consen  113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS  188 (526)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence            3456778888899999999999999999998765432   222 689999999999999999999999988111111001


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                      +. ...+..|..++...++-.+...+.+|..++........-  ...++.+..+|.+.++.+.-.++.++..+.....  
T Consensus       189 ~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--  263 (526)
T PF01602_consen  189 LI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--  263 (526)
T ss_dssp             HH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred             hH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence            11 124555556667789999999999999887654332200  3467788888888888888899999998876554  


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                         .-..+++.|+.++.+.+  ++..++..|..|+...   ...+.  .....+..+...  .+..++..++.+|..++.
T Consensus       264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~--~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYD--DDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCS--SSHHHHHHHHHHHHHH--
T ss_pred             ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCC--CChhHHHHHHHHHhhccc
Confidence               33457888999998654  7888999999988754   22233  223334455532  458889999999998885


Q ss_pred             CChhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhhcC
Q 009036          464 GGLRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       464 ~~~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .. ....      +++.|...+ ...++..++.+...+..++..
T Consensus       334 ~~-n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~  370 (526)
T PF01602_consen  334 ES-NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEK  370 (526)
T ss_dssp             HH-HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             cc-chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence            32 1222      456667776 444777888888877777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.35  E-value=3.6e-05  Score=79.15  Aligned_cols=262  Identities=16%  Similarity=0.163  Sum_probs=185.1

Q ss_pred             CchhHHHHHHhcCCCCHHH--HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC-C
Q 009036          225 SNEQEDYFVQKLKSPQVHE--VEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-K  300 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~  300 (546)
                      .++.++.|++++.+++.+.  +.+|.+.|..+.-  .+|+..++..| +..++.+-+ ...++.+...+.+|.+|.++ +
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            4677889999999888765  8889999988764  46788888766 445555444 34678888899999999997 5


Q ss_pred             chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      +....+++.|+++.++-..+..++.+..+++.+|.|.+.+.  +.+..|.+..+-+=|+.+-.+.+.-.+-.|+.+.+-|
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            67888899999999999999999999999999999988764  5677777777777777776666777888999999999


Q ss_pred             hcCchhHHHHHhcCcHH---HHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          379 SLVKSNRTKLVKLGSVN---ALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       379 s~~~~n~~~iv~~Gav~---~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      +.+.+.-..+-+.|.+.   .|+..+.-+.....+-.       ...|+    ..+-++.|+.+|.+.     .....++
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd-------~aQG~----~~d~LqRLvPlLdS~-----R~EAq~i  398 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHD-------YAQGR----GPDDLQRLVPLLDSN-----RLEAQCI  398 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhh-------hhccC----ChHHHHHhhhhhhcc-----hhhhhhh
Confidence            88777655555555443   34433333332221110       01111    123678888888862     2233344


Q ss_pred             HHHHHHhcC----C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          456 SVLYALSHG----G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       456 ~~L~~L~~~----~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ++.+ +|..    + .....++.+-|++..|-++..+.+.-...-|.++|+.+-+.
T Consensus       399 ~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  399 GAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             HHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            4433 2321    1 12344677789999999999988888888899999988653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.33  E-value=3.5e-05  Score=84.54  Aligned_cols=251  Identities=15%  Similarity=0.148  Sum_probs=177.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i  306 (546)
                      .+..+.+.|.++++..+.-|++.|.++..  ++...     -+++.+..++.++++.++..|+.++..+... ++.-   
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---  149 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---  149 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence            45677778899999999999999998883  22221     3578888999999999999999999988764 3321   


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhc-ccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSL-ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                      ... .++.+..+|.+.++.++..|+.++..+ ...+.....  ....+..|.+++...++-.+..++.+|..++......
T Consensus       150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~--~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL--IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH--HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh--HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence            122 588899999999999999999999998 111111111  1234555556666778889889999999887744332


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ..-  ...++.+..++.+..  +.-.|+.++..+.....     .-..+++.|+++|.+   .++..+..++..|..++.
T Consensus       227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s---~~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS---SDPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHCC
T ss_pred             hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc---ccchhehhHHHHHHHhhc
Confidence            210  446777777777543  77788888888877655     334577899999986   468899999999999987


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcCC
Q 009036          464 GGLRFKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       464 ~~~~~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ..   ...+.  . ....+..+. +.+..+|..+..+|..++...
T Consensus       297 ~~---~~~v~--~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  297 SN---PPAVF--N-QSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             HC---HHHHG--T-HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             cc---chhhh--h-hhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence            54   12221  1 223333444 888999999999999998643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.31  E-value=5.1e-06  Score=71.98  Aligned_cols=154  Identities=14%  Similarity=0.116  Sum_probs=127.8

Q ss_pred             hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH
Q 009036          348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR  424 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r  424 (546)
                      ...+.+..||.-.+. .+.+.++....-|.|.+.++.|=..+.+..++...++.|...+  +.+-+++.|+|||-.+.+.
T Consensus        13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence            344567777777665 5889999988889999999999999999999999999998766  8899999999999999999


Q ss_pred             HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          425 VAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       425 ~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ..|+++++++.++..+.+   ........|+.+|..||.++...+.++...-++..+.+.-.+.+.+.+--|...|....
T Consensus        93 ~~I~ea~g~plii~~lss---p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSS---PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HHHHHhcCCceEEeecCC---ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            999999999999998887   45778889999999999987777888877777777777766666666666666665543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.26  E-value=7.4e-05  Score=80.11  Aligned_cols=141  Identities=18%  Similarity=0.160  Sum_probs=108.8

Q ss_pred             CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHH
Q 009036          363 DSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVG  438 (546)
Q Consensus       363 ~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~  438 (546)
                      .+...+..|+.++.+++.. ..-+..+-+..++..|+.++.+++  +...++++|+||.. ...-+..++..|+|..|..
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            4667777777777777653 223334445578999999998876  78889999999985 5667999999999999999


Q ss_pred             HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCC-cHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          439 MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG-MAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       439 lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g-~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ++.+   .+...+..++++|..+..+..+..+...-.. ....|..+..+.+..+++.+..+||+|.-.
T Consensus       469 ~~~~---~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  469 MLTD---PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcC---CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            9998   4577889999999999876544333222222 245778889999999999999999999754

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.25  E-value=0.00044  Score=72.90  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=164.7

Q ss_pred             ChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHH-HHHhc-----CChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036          269 RLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKM-LIVRS-----GLVPPIVDVLMAGSAEAQEHACGAIFSLALDD  341 (546)
Q Consensus       269 g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~-~i~~~-----g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~  341 (546)
                      ..+..++.+|.. .+.++....+..+..|..+...+. .+.+.     ....+++.+|...+.-+...|+.+|..|....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            467777787764 467777777777777776544433 33332     46778888998888899999999998886543


Q ss_pred             chh-hHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHHH
Q 009036          342 QNK-TAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLILG  415 (546)
Q Consensus       342 ~~k-~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L~  415 (546)
                      ... ......-.+.-|...|+.. +...+..|+.+|..|...++.|..+.+.++++.|+.+|...    .+..+++-+++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            211 1000011223344455543 46677788899999999999999999999999999999752    37889999999


Q ss_pred             HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC------hhhHHHHHHCCcHHHHHHHHhcC-
Q 009036          416 NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG------LRFKGLAAAAGMAEVLMRMERVG-  488 (546)
Q Consensus       416 nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~------~~~~~~~~~~g~v~~L~~ll~~~-  488 (546)
                      .|+-.+++...+.+.+.|+.|+++++..  .-+++..-++.+|.||...+      ......+.+.|+++.+-.|.... 
T Consensus       213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         213 LLTFNPHAAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHhccHHHHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            9999888777777789999999999986  34678888999999998732      12344667777776665554443 


Q ss_pred             -CHHHHHHHHHHHHHh
Q 009036          489 -SEHVKEKAKRMLELM  503 (546)
Q Consensus       489 -s~~~k~~A~~lL~~L  503 (546)
                       ++++.+--..+-..|
T Consensus       291 ~DedL~edl~~L~e~L  306 (429)
T cd00256         291 DDEDLTDDLKFLTEEL  306 (429)
T ss_pred             CcHHHHHHHHHHHHHH
Confidence             566655544444444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.24  E-value=9.4e-06  Score=70.36  Aligned_cols=130  Identities=24%  Similarity=0.269  Sum_probs=110.8

Q ss_pred             HHHHHHHH-ccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036          271 LLALRSLI-ISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV  349 (546)
Q Consensus       271 i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  349 (546)
                      +..|+.-. ...+.+.++....-|.|++.++.|-..+.+..+++..++.|...+..+++.+.+.|+|++.+..++..|.+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e   97 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE   97 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence            34444433 34688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHH
Q 009036          350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGM  400 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~l  400 (546)
                      .++++.++..+.+....+...|+.+|..|+... ..+..+....++..+.+.
T Consensus        98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            999999999999988888899999999999854 456676665555554444

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00062  Score=70.03  Aligned_cols=272  Identities=17%  Similarity=0.147  Sum_probs=191.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh---------hhhHHhhcCChHHHHHHHHccC------CHHHHHHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE---------ETRVSLCTPRLLLALRSLIISR------YTNVQVNAV  290 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~---------~~r~~l~~~g~i~~Lv~lL~s~------~~~v~~~A~  290 (546)
                      -++++.++..|.+.+.++....+..|+.|+..+.         .....+++.++++.|+.-+..=      +.....+++
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            4678899999999999999999999999987532         2345677788999998876532      233456677


Q ss_pred             HHHHHhhc-CCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc----
Q 009036          291 AALVNLSL-EKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS----  362 (546)
Q Consensus       291 ~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~----  362 (546)
                      .++.|+.. .+.....+++.|.+.-|+.-+...  -...+.+|..+|.-+..+. +++...+...++..|++-+.-    
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            88888876 466677777777666655544332  3456789999998877765 578888888888888876632    


Q ss_pred             C-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhhCCccc---HHHHHhCCcH
Q 009036          363 D-----SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLASCSDG---RVAVLDSGGV  433 (546)
Q Consensus       363 ~-----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa~~~e~---r~~i~~~g~i  433 (546)
                      +     ..+...+...+|+.+...+.|+..++...++..+.-++..+. .+..++++|..+...+++   +..+++..++
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGL  363 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGL  363 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhH
Confidence            1     345667777888888889999999999988888877777655 677799999999887764   6667888888


Q ss_pred             HHHHHHHccCCC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          434 ECLVGMLRKGTE-------LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       434 ~~Lv~lL~~~~~-------~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ..+..+......       .-.+..|+.+.+|+.+-.......       -...|.++..+..+++.+--.--|+...
T Consensus       364 rtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~-------r~R~l~KF~End~EKvdRl~el~lky~~  434 (536)
T KOG2734|consen  364 RTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVH-------RQRLLRKFVENDFEKVDRLMELYLKYLI  434 (536)
T ss_pred             HHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccH-------HHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            888877652110       124567889999998865321111       1234555566666666554444444443

>TIGR02270 conserved hypothetical protein

Probab=98.23  E-value=0.00019  Score=75.70  Aligned_cols=211  Identities=15%  Similarity=0.024  Sum_probs=146.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      .++.++..|.+.+..++..+++.|..+           ...+..+.|+.+|.+.++.++..++.++...           
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------  144 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------  144 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------
Confidence            377888888877777888887777543           2346788888888888888888777666641           


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK  387 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~  387 (546)
                      .....+.+..+|++.++.++..|+.+|..+          .....++.|...+.+.++.++..|+.+|..+-.       
T Consensus       145 ~~~~~~~L~~~L~d~d~~Vra~A~raLG~l----------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------  207 (410)
T TIGR02270       145 RHDPGPALEAALTHEDALVRAAALRALGEL----------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------  207 (410)
T ss_pred             ccChHHHHHHHhcCCCHHHHHHHHHHHHhh----------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------
Confidence            123467888888888999999999999887          334567778888888899999999888865522       


Q ss_pred             HHhcCcHHHHHHHHhC-chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036          388 LVKLGSVNALLGMVNS-GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL  466 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~  466 (546)
                         ..++..++.+... +..+...+.++..+...         ..++..|..++..     +.++..++.+|..+-.   
T Consensus       208 ---~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~---------~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~---  267 (410)
T TIGR02270       208 ---RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG---------PDAQAWLRELLQA-----AATRREALRAVGLVGD---  267 (410)
T ss_pred             ---HhHHHHHHHHHhccCccHHHHHHHHHHhCCc---------hhHHHHHHHHhcC-----hhhHHHHHHHHHHcCC---
Confidence               1345566654433 33333333333333311         1466777788877     3478888888876643   


Q ss_pred             hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       467 ~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                              ...++.|+..+.+.  .+++.|.+.++.+++-+
T Consensus       268 --------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       268 --------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             --------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence                    23678888887654  39999999999998743

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.21  E-value=0.00014  Score=78.04  Aligned_cols=161  Identities=18%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             cCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHH
Q 009036          280 SRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLL  357 (546)
Q Consensus       280 s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv  357 (546)
                      ..|......|+..+.+++.. ..-+..+....+..+|+.+|..++..++..+.++|.||... .+.|..+.+.|+|..|.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            45777777777777777653 22222244567899999999999999999999999999886 46799999999999999


Q ss_pred             HhhccCCHHHHHHHHHHHHHhhcCchhHHH--HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhh-CCcccHHHHHhC--
Q 009036          358 HLLKSDSERTQHDSALALYHLSLVKSNRTK--LVKLGSVNALLGMVNSGH--MTGRVLLILGNLA-SCSDGRVAVLDS--  430 (546)
Q Consensus       358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~--iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa-~~~e~r~~i~~~--  430 (546)
                      .++.+.+..++..++|+|+++....++..+  ..+.=....++.++.+++  ++|.|+.+|.||. .+.+..+.+++.  
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~  547 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK  547 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence            999999999999999999999986554333  233333445666777766  9999999999996 455666666652  


Q ss_pred             CcHHHHHHHH
Q 009036          431 GGVECLVGML  440 (546)
Q Consensus       431 g~i~~Lv~lL  440 (546)
                      ..+..+...+
T Consensus       548 ~~ld~i~l~l  557 (678)
T KOG1293|consen  548 DVLDKIDLQL  557 (678)
T ss_pred             HHHHHHHHHH
Confidence            2444444444

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.2e-06  Score=84.96  Aligned_cols=54  Identities=17%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV   95 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l   95 (546)
                      ..+..+.|-||++-++||--+||||-||=+||..|..... -||.|+....+..+
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcce
Confidence            4457799999999999999999999999999999987433 49999988776554

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.19  E-value=2.2e-06  Score=85.20  Aligned_cols=53  Identities=19%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             CceeCcccccc-cCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 009036           44 GEFLCPVSGSL-MADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI   96 (546)
Q Consensus        44 ~~~~CpI~~~~-m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~   96 (546)
                      ++..||+|+.- +..|=    +.+|||+||++||.+.|..+..+||.|+.++....+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            45689999983 34452    2379999999999998777778999999888766643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02926 zinc finger-like protein; Provisional

Probab=98.11  E-value=1.8e-06  Score=80.66  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=42.9

Q ss_pred             CCCCceeCcccccccCC---------CeecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCccc
Q 009036           41 EPPGEFLCPVSGSLMAD---------PVVVSSGHTFERACAHVCKTLG-----FTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~d---------PV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn   98 (546)
                      ....+..|+||++...+         +|+.+|+|+||..||.+|.+..     ...||.|+..+.  .++|+
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS  235 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS  235 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence            34567889999998754         4777999999999999998742     236999988653  44554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00015  Score=78.95  Aligned_cols=213  Identities=15%  Similarity=0.167  Sum_probs=164.7

Q ss_pred             HHHHHHHHc-cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccc-----
Q 009036          271 LLALRSLII-SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ-----  342 (546)
Q Consensus       271 i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~-----  342 (546)
                      |+.|+.-+. +.-.+-+..|+..|..++..  .|.. +...++++|+.+|+..  ++++..+++.++.++...++     
T Consensus        24 I~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~  100 (970)
T KOG0946|consen   24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM  100 (970)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence            344444333 23455677888888877642  3333 3356899999999976  89999999999999876552     


Q ss_pred             --hh----------h-HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhc-CcHHHHHHHHhCch-
Q 009036          343 --NK----------T-AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNRTKLVKL-GSVNALLGMVNSGH-  405 (546)
Q Consensus       343 --~k----------~-~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~-Gav~~Lv~lL~~~~-  405 (546)
                        .+          + .|...+.|..|+..+...+-.+|..++..|.+|-..  .+.+..+... -+|..|+.+|.+.. 
T Consensus       101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE  180 (970)
T KOG0946|consen  101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE  180 (970)
T ss_pred             ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence              12          1 222367888999999988999999999999998764  4566666666 89999999998754 


Q ss_pred             -HHHHHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHH
Q 009036          406 -MTGRVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLM  482 (546)
Q Consensus       406 -~~e~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~  482 (546)
                       ++..++-.|..|.........++. .++...|+.++.... .+.--+.+-|+..|.+|-..+...+..+++.+-++.|.
T Consensus       181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~  260 (970)
T KOG0946|consen  181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL  260 (970)
T ss_pred             hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH
Confidence             888999999999998888888887 789999999998743 22335789999999999998888999999999999998


Q ss_pred             HHHh
Q 009036          483 RMER  486 (546)
Q Consensus       483 ~ll~  486 (546)
                      .++.
T Consensus       261 klL~  264 (970)
T KOG0946|consen  261 KLLS  264 (970)
T ss_pred             hhcC
Confidence            6644

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=7.5e-07  Score=88.23  Aligned_cols=68  Identities=13%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD-FSTVIPNLALKSTILNW  108 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~-~~~l~pn~~l~~~i~~~  108 (546)
                      .+..+|.||||+.+++--.++ .|+|.||+.||-+-+..++..||.|++.+. ...|.++-..-.+|.+.
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            456789999999999999988 899999999999989999999999998764 45677666666666554

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=3.9e-06  Score=94.07  Aligned_cols=72  Identities=29%  Similarity=0.392  Sum_probs=63.6

Q ss_pred             CCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      .++|++|..||...+|+|||++| +|+|.||+-|++++-. .++-|.|+.++....+.||..|+.-|+.|...+
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            36999999999999999999998 9999999999998652 335567899999999999999999999996654

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.07  E-value=2.9e-06  Score=59.99  Aligned_cols=41  Identities=20%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             eCccccccc---CCCeecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036           47 LCPVSGSLM---ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGT   88 (546)
Q Consensus        47 ~CpI~~~~m---~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~   88 (546)
                      .||||.+.+   +.|++++|||+||..||.++. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            399999999   468889999999999999987 44558999864

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.06  E-value=0.00061  Score=71.10  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=179.8

Q ss_pred             HHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHH
Q 009036          249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEA  326 (546)
Q Consensus       249 ~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~  326 (546)
                      ..|..+.+..+..|..+.-.-..+.+..++-+++.+++..+..++..+..++..-..+.+.+.--.++.-|...  ...-
T Consensus         5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E   84 (371)
T PF14664_consen    5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE   84 (371)
T ss_pred             HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence            34455555556555555544556666656656669999999999999999998888888888777777877754  5677


Q ss_pred             HHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-
Q 009036          327 QEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-  405 (546)
Q Consensus       327 ~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-  405 (546)
                      |++|...+..+......... .-.|.+..|+.+..+.+...+..|+.+|+.|+..+  -..++..|++..|++.+.++. 
T Consensus        85 R~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   85 REQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence            88999999888665433222 23578889999998888999999999999998753  234567799999999998754 


Q ss_pred             -HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC----CCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHC-Cc
Q 009036          406 -MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG----TELSE--STQESCVSVLYALSHGGLRFKGLAAAA-GM  477 (546)
Q Consensus       406 -~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~----~~~s~--~~~e~Av~~L~~L~~~~~~~~~~~~~~-g~  477 (546)
                       ..+.++.++..+-..+..|..+...--+..++.-+.+.    ...+.  +.-..+..++..+-+.=.+.-...... .+
T Consensus       162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~  241 (371)
T PF14664_consen  162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG  241 (371)
T ss_pred             hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence             77889999999999999998887544445554444332    11122  122334444444433211222222222 46


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          478 AEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       478 v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ++.|+..+..+++++|+....+|-.+-+-.
T Consensus       242 lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            888999999999999999999998887654

>PTZ00429 beta-adaptin; Provisional

Probab=98.05  E-value=0.00094  Score=75.48  Aligned_cols=252  Identities=12%  Similarity=0.078  Sum_probs=171.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      .+.+|-+.|.+.+...+.++++.|-.+...+...      ..+.+-+++++.++|.+++.-....|.+.+........+ 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-  105 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-  105 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence            4567888888888888888888776544333222      124666777888999999998888888877632221111 


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK  387 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~  387 (546)
                         .+..|..=+.+.++.+|..|+++|.++-...     +. .-.+..+.+.|.+.++.+|+.|+.++..|-....  ..
T Consensus       106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el  174 (746)
T PTZ00429        106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL  174 (746)
T ss_pred             ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence               3566777778889999999999999874311     11 1245667778888899999999999999865332  23


Q ss_pred             HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036          388 LVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG  465 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~  465 (546)
                      +.+.|.++.|.++|.+.+  +...|+.+|..++.....+- -...+.+..|+..|..   .++..+-..+.+|......+
T Consensus       175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e---~~EW~Qi~IL~lL~~y~P~~  250 (746)
T PTZ00429        175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE---CNEWGQLYILELLAAQRPSD  250 (746)
T ss_pred             ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc---CChHHHHHHHHHHHhcCCCC
Confidence            345688999999998765  89999999999986433221 1234556677777766   34777777777764433222


Q ss_pred             hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       466 ~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .   ..+.  .++..+...+++.|+.+.-.|..++-.+...
T Consensus       251 ~---~e~~--~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        251 K---ESAE--TLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             c---HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            1   1111  2556677777788888877777777666543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=3.1e-06  Score=87.65  Aligned_cols=73  Identities=22%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-----CCCcccHHHHHHHHHHHHHc
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-----STVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-----~~l~pn~~l~~~i~~~~~~~  112 (546)
                      +..++.+|.|-||..++.+||+++|||+||..||.+.++ ...+||.|+..+..     ....+|+.+.++|..|+..-
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~  155 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS  155 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            345689999999999999999999999999999999666 56689999877653     12346778889998887654

>PF05536 Neurochondrin: Neurochondrin

Probab=97.98  E-value=0.00033  Score=76.81  Aligned_cols=211  Identities=18%  Similarity=0.117  Sum_probs=148.7

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccc----hhhHHhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhh
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ----NKTAIGVLGALPPLLHLLKSD-------SERTQHDSALALYHLS  379 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~~Ls  379 (546)
                      .++..+.+|+..+++-|-.++..+..+...++    .+..|.+.=+.+-|-++|+.+       ....+..|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            35667788888887777777777788876543    244566655578888898872       3456677888999999


Q ss_pred             cCchhH--HHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036          380 LVKSNR--TKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESC  454 (546)
Q Consensus       380 ~~~~n~--~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~A  454 (546)
                      ..++..  .+|+.  -||.|++++...   .+...|+.+|..++..++|+.++++.|+++.|+.++.+.    ....+.|
T Consensus        86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~A  159 (543)
T PF05536_consen   86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIA  159 (543)
T ss_pred             CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHH
Confidence            976653  55554  599999999764   378999999999999999999999999999999999883    5678999


Q ss_pred             HHHHHHHhcCCh-----hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc---c-cccCChHHHHhcCCc
Q 009036          455 VSVLYALSHGGL-----RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE---E-EEGVDWDELLDSGLV  525 (546)
Q Consensus       455 v~~L~~L~~~~~-----~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~---~-~~~~~~~~~~~~~~~  525 (546)
                      +.+|.+++....     +....+.  .++..|-..........|-.+..+|..+-...+.   . -....|-.=+-.|+-
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~  237 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence            999999987432     1111111  2445555555555555566666666666554431   1 145578666655655


Q ss_pred             cccc
Q 009036          526 SRSR  529 (546)
Q Consensus       526 ~~~~  529 (546)
                      .-.+
T Consensus       238 ~iL~  241 (543)
T PF05536_consen  238 DILQ  241 (543)
T ss_pred             HHHh
Confidence            5444

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0002  Score=76.74  Aligned_cols=284  Identities=14%  Similarity=0.113  Sum_probs=181.8

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-c---CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-T---PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~---~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      ...++.|...|.+.+...++-|..+|..++.++.+.-..=+ .   .-.||.++.+.+++++.++..|+.++-.......
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            36688999999999989999999999999987653222111 1   2368889999999999999999988876544322


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       302 nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      -.-...-..+++.|..+-...++++|.+.+++|..|......|-.-.-.+.++-++..-++.+.++--+|+.....++..
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            11111123466667776667799999999999999876654443323356778888888888888989999999999887


Q ss_pred             chhHHHHHhc--CcHHHHHHHHhCch--------------------------HHHH--HH-------------------H
Q 009036          382 KSNRTKLVKL--GSVNALLGMVNSGH--------------------------MTGR--VL-------------------L  412 (546)
Q Consensus       382 ~~n~~~iv~~--Gav~~Lv~lL~~~~--------------------------~~e~--al-------------------~  412 (546)
                      +-.+..+...  ..||.|+.-+.-.+                          .+.+  ..                   .
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~  366 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF  366 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence            7444444333  67777765221000                          0000  00                   0


Q ss_pred             HHHHhhCCcccHHH----HHhCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHCCcHHHHHHHHh
Q 009036          413 ILGNLASCSDGRVA----VLDSGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGGL-RFKGLAAAAGMAEVLMRMER  486 (546)
Q Consensus       413 ~L~nLa~~~e~r~~----i~~~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~~-~~~~~~~~~g~v~~L~~ll~  486 (546)
                      .=+||=.|....-.    +.....++.++-+|+..- ...=.++|.++-+|..++.+.- ..-...-  ..++.|+.++.
T Consensus       367 ~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~  444 (885)
T KOG2023|consen  367 SDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLD  444 (885)
T ss_pred             ccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhc
Confidence            00222222211111    223345566666655421 1234588999999998886421 1111111  26789999999


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          487 VGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       487 ~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      +..+-+|....+.|...+..--.+.
T Consensus       445 DKkplVRsITCWTLsRys~wv~~~~  469 (885)
T KOG2023|consen  445 DKKPLVRSITCWTLSRYSKWVVQDS  469 (885)
T ss_pred             cCccceeeeeeeeHhhhhhhHhcCC
Confidence            9999999999998888876544444

>PF05536 Neurochondrin: Neurochondrin

Probab=97.92  E-value=0.00068  Score=74.36  Aligned_cols=231  Identities=17%  Similarity=0.145  Sum_probs=159.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh---hhHHhhcCChHHHHHHHHcc-------CCHHHHHHHHHHHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE---TRVSLCTPRLLLALRSLIIS-------RYTNVQVNAVAALVN  295 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~l~~~g~i~~Lv~lL~s-------~~~~v~~~A~~~L~n  295 (546)
                      ...+++.++.|++.+.+.+-.++-.+.++.+.++.   .++.+.++=+..+|-.+|.+       +....+.-|+.+|..
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            46788999999999977888899999999987763   34567777778999999986       335667888999999


Q ss_pred             hhcCCchH--HHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHH
Q 009036          296 LSLEKINK--MLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSA  372 (546)
Q Consensus       296 Ls~~~~nk--~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~  372 (546)
                      ++.+++..  ..++  +.||.|++++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+
T Consensus        84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            99876543  3333  469999999988866 99999999999999999999999999999999999988 456678899


Q ss_pred             HHHHHhhcCchhHHHHHhc-----CcHHHHHHHHhC--chHHHHHHHHHHHhhCCccc--HHHHHhCCc----HHHHHHH
Q 009036          373 LALYHLSLVKSNRTKLVKL-----GSVNALLGMVNS--GHMTGRVLLILGNLASCSDG--RVAVLDSGG----VECLVGM  439 (546)
Q Consensus       373 ~aL~~Ls~~~~n~~~iv~~-----Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~--r~~i~~~g~----i~~Lv~l  439 (546)
                      .+|.+++...... .+-+.     ..+..|...+..  +..+-..+..|.++-...+.  .........    ...|..+
T Consensus       161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            9999987643311 11011     233444444432  22455567777776544321  111122233    3344455


Q ss_pred             HccCCCCCHHHHHHHHHHHHHHh
Q 009036          440 LRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       440 L~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                      |.+.  ..+..+..|+.....|.
T Consensus       240 L~sr--~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  240 LQSR--LTPSQRDPALNLAASLL  260 (543)
T ss_pred             HhcC--CCHHHHHHHHHHHHHHH
Confidence            5553  34566666655555553

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0005  Score=67.83  Aligned_cols=234  Identities=16%  Similarity=0.124  Sum_probs=154.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036          271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV  349 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  349 (546)
                      +.-|+.+|.+.++.++..|+..+..+... ..+.... +...++.|.+++....+  -+.|+.+|.|++.....+..+.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~   81 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ   81 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence            44578899999999999999999888766 3332222 23467888888887655  66889999999999888777766


Q ss_pred             cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc------CcHHHHHHHHhCch-----HHHHHHHHHHHhh
Q 009036          350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL------GSVNALLGMVNSGH-----MTGRVLLILGNLA  418 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~------Gav~~Lv~lL~~~~-----~~e~al~~L~nLa  418 (546)
                      . .++.++.++.+.....-..++.+|.||+..+.....+...      ..+..|+..+.+++     --.+..-++.||+
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            6 8888888888764445577888999999876543333221      23344444444332     3456788999999


Q ss_pred             CCcccHHHHHhCCcH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-HCCcHHHHHHHHh---------
Q 009036          419 SCSDGRVAVLDSGGV--ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAA-AAGMAEVLMRMER---------  486 (546)
Q Consensus       419 ~~~e~r~~i~~~g~i--~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~-~~g~v~~L~~ll~---------  486 (546)
                      ..+.||..+.+...+  +.++.+ ..  .++..-+...+++|.|.|.+..-...++. +...++.|+.-+.         
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~f-t~--~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPF-TS--EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED  237 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcc-cc--cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence            999999999876522  222221 22  13455667888999998886543333332 1223333322111         


Q ss_pred             -----------------cCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          487 -----------------VGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       487 -----------------~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                                       ..++.++.+-.++|-+|+....+.+
T Consensus       238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe  279 (353)
T KOG2973|consen  238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE  279 (353)
T ss_pred             HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence                             1267888888888888877665544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00013  Score=76.47  Aligned_cols=261  Identities=15%  Similarity=0.162  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch-HHHHHhcCChHHHHHHHccC
Q 009036          244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN-KMLIVRSGLVPPIVDVLMAG  322 (546)
Q Consensus       244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n-k~~i~~~g~l~~Lv~lL~~~  322 (546)
                      -..++..|..+++.-...|.-+..+.+.++|+.+|..++..+...+...+.|+.....| +..+.+.|++..|+.++.+.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            33456667778887777888999999999999999988887777888889988876544 77778999999999999999


Q ss_pred             CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cchh---HHHHHhcC----
Q 009036          323 SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSN---RTKLVKLG----  392 (546)
Q Consensus       323 ~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n---~~~iv~~G----  392 (546)
                      +..+|.+..++|..+......  |-.....-++..++.+..++.-.++...+..|.|+.- ...|   +.-.+..-    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999887644  4344556688999999998888899999999999854 2222   11111111    


Q ss_pred             cHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCC---------C--------------
Q 009036          393 SVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGT---------E--------------  445 (546)
Q Consensus       393 av~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~---------~--------------  445 (546)
                      ..+.|++.+...+  ..+..+.+|.+++.+.++...++.  ...+..+..+|....         .              
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            3344455544433  455568888888888887777663  455555555543210         0              


Q ss_pred             ---------------------------CCHHHHHHHHHHHHHHhc---CC------hhhHHHHHHCCcHHHHHHHHhcCC
Q 009036          446 ---------------------------LSESTQESCVSVLYALSH---GG------LRFKGLAAAAGMAEVLMRMERVGS  489 (546)
Q Consensus       446 ---------------------------~s~~~~e~Av~~L~~L~~---~~------~~~~~~~~~~g~v~~L~~ll~~~s  489 (546)
                                                 .+.+.....+++..++.-   +.      .++.++....|.-+.|..+....+
T Consensus       646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S  725 (743)
T COG5369         646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS  725 (743)
T ss_pred             ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence                                       011121222222222211   11      145556667787788888888889


Q ss_pred             HHHHHHHHHHHHHhh
Q 009036          490 EHVKEKAKRMLELMK  504 (546)
Q Consensus       490 ~~~k~~A~~lL~~L~  504 (546)
                      +.+|+++..+|.+|.
T Consensus       726 l~vrek~~taL~~l~  740 (743)
T COG5369         726 LIVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999998875

>PTZ00429 beta-adaptin; Provisional

Probab=97.89  E-value=0.0032  Score=71.26  Aligned_cols=183  Identities=14%  Similarity=0.033  Sum_probs=121.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..+..+.+.|.+.++-+|..|+-.+.++.+.+++   .+.+.|+++.|..+|.+.|+.++.+|+.+|..+......... 
T Consensus       140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-  215 (746)
T PTZ00429        140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-  215 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-
Confidence            4456677788899999999999999998876552   344678999999999999999999999999998764322222 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc--hh
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK--SN  384 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--~n  384 (546)
                      ...+.+..|+..|...++-.+...+.+|....-.+ ...   ....+..+...|++.++.+.-.|+.++.++....  +.
T Consensus       216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~  291 (746)
T PTZ00429        216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL  291 (746)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence            22345667777777767667766666664422111 111   1246777888888889999999999999887642  11


Q ss_pred             HHHHHhcCcHHHHHHHHhC-chHHHHHHHHHHHhh
Q 009036          385 RTKLVKLGSVNALLGMVNS-GHMTGRVLLILGNLA  418 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa  418 (546)
                      ...+. ......|+.++.. .+++.-++..|..|.
T Consensus       292 ~~~~~-~rl~~pLv~L~ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        292 IERCT-VRVNTALLTLSRRDAETQYIVCKNIHALL  325 (746)
T ss_pred             HHHHH-HHHHHHHHHhhCCCccHHHHHHHHHHHHH
Confidence            11111 1123455555543 235555555554443

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=7.1e-06  Score=85.47  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             CceeCcccccccCCCeecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCCCCcccH
Q 009036           44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDFSTVIPNL   99 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~~l~pn~   99 (546)
                      .+..||||++-..=|+.+.|||.||=.||.++|..    +.+.||.|+..+...+|.|-+
T Consensus       185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            37899999999999999999999999999996653    455899999888877777754

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0018  Score=73.88  Aligned_cols=259  Identities=17%  Similarity=0.123  Sum_probs=162.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhhHHhhc--CChHHHHHHHHcc--CC--------------HHHHHHHHHHHHHhhcC
Q 009036          238 SPQVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLIIS--RY--------------TNVQVNAVAALVNLSLE  299 (546)
Q Consensus       238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~--~g~i~~Lv~lL~s--~~--------------~~v~~~A~~~L~nLs~~  299 (546)
                      .-+...|..|+..|..+++.-+..++....  .-+++.++.++..  .|              ......|..+|-.++.+
T Consensus       260 ~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~  339 (1075)
T KOG2171|consen  260 ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALH  339 (1075)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhc
Confidence            335677888999998888775444443333  2245555555432  11              01234466667666665


Q ss_pred             CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      =..+..+  .-.++.+-.+|++.+..-|..|+.+|..++.... +..++. ...++.++..|.+.++++|-.|+.+|..+
T Consensus       340 L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~  416 (1075)
T KOG2171|consen  340 LGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQM  416 (1075)
T ss_pred             CChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            3322211  1245666677889999999888888888765421 222233 45777888889999999999999999999


Q ss_pred             hcC-chhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHH
Q 009036          379 SLV-KSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       379 s~~-~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      +.+ ...-.+-...-+++.|+..+.+..   ++..|+.+|.|+...-.+ ..+..  .+.+..++..|...  ..+.++|
T Consensus       417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~--~~~~v~e  493 (1075)
T KOG2171|consen  417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQS--SKPYVQE  493 (1075)
T ss_pred             hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcC--CchhHHH
Confidence            873 333344444457888999988743   778888888887753221 11211  34445455555553  4689999


Q ss_pred             HHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCC----HHHHHHHHHHHHHhh
Q 009036          453 SCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGS----EHVKEKAKRMLELMK  504 (546)
Q Consensus       453 ~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s----~~~k~~A~~lL~~L~  504 (546)
                      .++.+|..++.. ...+......  .++.|..++++.+    ...|.+..+.+..+.
T Consensus       494 ~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  494 QAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            999999999863 2244444433  6788888888775    223444444444443

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.76  E-value=1.6e-05  Score=83.38  Aligned_cols=67  Identities=24%  Similarity=0.377  Sum_probs=55.2

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP-NLALKSTILNW  108 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p-n~~l~~~i~~~  108 (546)
                      .+.+++.||||..+++||+.+ .|||.||+.||..|... +..||.|+.........| -..+++.+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            367889999999999999995 99999999999999987 667888877766555555 45577887777

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2.4e-05  Score=74.98  Aligned_cols=50  Identities=12%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHH-HHhcCCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHV-CKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~-~~~~~~~~cp~~~~~~~~   92 (546)
                      -.+|.|+||++.+.+|+-++|||.||-.||-. |-.+...-||.|+....+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            47999999999999999999999999999988 877666679999876544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.70  E-value=5e-05  Score=73.46  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             eeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHHc
Q 009036           46 FLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTT-PDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~-~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      +.||+|..|++.|+-+ +|||+||..||+.-+-....-||.|... +--..|.|+.-.+.-|+.+...+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence            8999999999999999 8899999999998665444568777542 22347899999888888887644

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.68  E-value=7.4e-05  Score=51.86  Aligned_cols=40  Identities=28%  Similarity=0.223  Sum_probs=37.8

Q ss_pred             ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009036          258 REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLS  297 (546)
Q Consensus       258 ~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs  297 (546)
                      +++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.67  E-value=0.018  Score=60.23  Aligned_cols=269  Identities=16%  Similarity=0.099  Sum_probs=178.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .+.+...+-+.+.+++..+.+.+|.+... ...-..+.+.++--.++..|..+  +..-++.|+..+..+.....+... 
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence            34455444455588899999999888775 45556666666655666666543  455677898888776654333222 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      .-.|++..|+.+..+.++..+..+..+|..++..+.  +.+...|++..|++.+.++..+.....+.++.++...+..|.
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence            234788999999999999999999999999987543  345678999999999988766777778889999988888887


Q ss_pred             HHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCCcccHHHHHhC--CcHHHHHHHHccCCCCCHHHHHH
Q 009036          387 KLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASCSDGRVAVLDS--GGVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~~e~r~~i~~~--g~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      .+...--+..++.-+.+.           +.-..+..++..+-+.=.|--.+...  .++..|+..|..   .++++++.
T Consensus       183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~---p~~~ir~~  259 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL---PNPEIRKA  259 (371)
T ss_pred             hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC---CCHHHHHH
Confidence            666544455555554432           11122333443333333343333322  366777777766   34566666


Q ss_pred             HHHHHHHHhcC-----------------Chh-----------------------------------hHHHHHHCCcHHHH
Q 009036          454 CVSVLYALSHG-----------------GLR-----------------------------------FKGLAAAAGMAEVL  481 (546)
Q Consensus       454 Av~~L~~L~~~-----------------~~~-----------------------------------~~~~~~~~g~v~~L  481 (546)
                      .+.+|..+-.-                 ...                                   .-.++.+.|.++.|
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L  339 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEAL  339 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHH
Confidence            66666655210                 000                                   01235688999999


Q ss_pred             HHHHhcC-CHHHHHHHHHHHHHhh
Q 009036          482 MRMERVG-SEHVKEKAKRMLELMK  504 (546)
Q Consensus       482 ~~ll~~~-s~~~k~~A~~lL~~L~  504 (546)
                      +++..+. ++.+..+|.-+|..+-
T Consensus       340 ~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  340 VELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHH
Confidence            9998877 8899999999887664

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.63  E-value=0.003  Score=67.83  Aligned_cols=259  Identities=17%  Similarity=0.139  Sum_probs=167.8

Q ss_pred             HHHHHHHhccChhhhHHhhcCChHHHHHHHH----------ccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHH
Q 009036          248 LISLRKLTRSREETRVSLCTPRLLLALRSLI----------ISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIV  316 (546)
Q Consensus       248 l~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL----------~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv  316 (546)
                      +..|+.++++ ..+-..+....++..|..+-          ...+..+..+|+.+|.|+... +..|..+++.|+.+.++
T Consensus         2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            4556666664 34555555555666666654          245788999999999998775 77888888999999999


Q ss_pred             HHHccC-----CHHHHHHHHHHHhhccccc-chhhHHh-hcCChHHHHHhhcc-----------------CCHHHHHHHH
Q 009036          317 DVLMAG-----SAEAQEHACGAIFSLALDD-QNKTAIG-VLGALPPLLHLLKS-----------------DSERTQHDSA  372 (546)
Q Consensus       317 ~lL~~~-----~~~~~~~Aa~~L~~Ls~~~-~~k~~i~-~~g~l~~Lv~lL~~-----------------~~~~~~~~A~  372 (546)
                      ..|+..     +.++.....++|+-++... +.+..+. +.+++..|+..|..                 .+..+..+++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999976     7899999999999888654 4554444 45777777766542                 0234567888


Q ss_pred             HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCC-ccc-------HHHH----Hh
Q 009036          373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASC-SDG-------RVAV----LD  429 (546)
Q Consensus       373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~-~e~-------r~~i----~~  429 (546)
                      ++|+|+.........--..+.++.|+.+|..-           .....++.+|.|+-.. .+.       ...+    ..
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            99999976433222112224555555554321           1556677777776321 111       1111    11


Q ss_pred             CCcHHHHHHHHccCCC--C---CHHHHHHHHHHHHHHhcCChhhHHHHHH----------------CCcHHHHHHHHhcC
Q 009036          430 SGGVECLVGMLRKGTE--L---SESTQESCVSVLYALSHGGLRFKGLAAA----------------AGMAEVLMRMERVG  488 (546)
Q Consensus       430 ~g~i~~Lv~lL~~~~~--~---s~~~~e~Av~~L~~L~~~~~~~~~~~~~----------------~g~v~~L~~ll~~~  488 (546)
                      ...+..|+++|...-.  .   -.+.-.-.+.+|..++..+...+..++.                ...-..|++++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2367778887765210  1   1133444566667777765555555443                23557899999988


Q ss_pred             CHHHHHHHHHHHHHhhcCC
Q 009036          489 SEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       489 s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+.+|+.+.++|..||+.+
T Consensus       321 ~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CchHHHHHHHHHHHHHhhh
Confidence            8999999999999998654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.63  E-value=0.00064  Score=70.25  Aligned_cols=112  Identities=18%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHHHHhcCChHHHHH
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKMLIVRSGLVPPIVD  317 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~Lv~  317 (546)
                      .++.+...+..|.++.+++++.+..+++.|++..++--+...++.+..+++.+|.|++.+  ...+.+|++..+-+-|.-
T Consensus       235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~  314 (832)
T KOG3678|consen  235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP  314 (832)
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence            567778888999999999999999999999999999988889999999999999999986  577888888776666666


Q ss_pred             HHccCCHHHHHHHHHHHhhcccccchhhHHhhcC
Q 009036          318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG  351 (546)
Q Consensus       318 lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g  351 (546)
                      +-.+.+.-++.+|+-++..|+.+.+....+...|
T Consensus       315 LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~  348 (832)
T KOG3678|consen  315 LAFSKDELLRLHACLAVAVLATNKEVEREVRKSG  348 (832)
T ss_pred             hhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhcc
Confidence            6666788889999999998887766555444443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.63  E-value=0.0069  Score=62.54  Aligned_cols=182  Identities=24%  Similarity=0.267  Sum_probs=127.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.+++.|.+.++.++..|...+..+...           -+++.|..+|.+.+..++..|+.+|..+-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            4678899999888888999988886554432           46899999999999999999999888653         


Q ss_pred             HhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHH------------HHHHHHH
Q 009036          307 VRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSER------------TQHDSAL  373 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~------------~~~~A~~  373 (546)
                       ....++.|+..|. +.+..+|..++.+|..+          ....++..|+..+.+....            ++..++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             2357899999999 58999999999999988          3345588888888876532            2333333


Q ss_pred             HHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036          374 ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ  451 (546)
Q Consensus       374 aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~  451 (546)
                      +|..+          ...-+++.|..++.+..  ++..+...|..+....        ..+...+...+..   .+..++
T Consensus       172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~~~~vr  230 (335)
T COG1413         172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---ESLEVR  230 (335)
T ss_pred             HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---CCHHHH
Confidence            33332          23347788888888765  7888888888776643        2233444555544   234555


Q ss_pred             HHHHHHHHH
Q 009036          452 ESCVSVLYA  460 (546)
Q Consensus       452 e~Av~~L~~  460 (546)
                      ..++..|..
T Consensus       231 ~~~~~~l~~  239 (335)
T COG1413         231 KAALLALGE  239 (335)
T ss_pred             HHHHHHhcc
Confidence            555444433

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.62  E-value=5.6e-05  Score=59.72  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             CcccccccCCC-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 009036           48 CPVSGSLMADP-------------VVVSSGHTFERACAHVCKTLGFTPTLVDG   87 (546)
Q Consensus        48 CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~   87 (546)
                      |+||++-|.||             +..+|||.|-..||.+|++... +||.|+
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            99999999555             3448999999999999997554 899885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.62  E-value=3.1e-05  Score=76.62  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=53.4

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFS----TVIPNLALKSTILNW  108 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~  108 (546)
                      ++-....|++|..+|.|+-|+ .|=|||||+||-+++.. ...||.|...+..+    .+.++++|+.++...
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            455778899999999999886 89999999999999886 55777777654433    577778888887554

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=7.7e-05  Score=79.08  Aligned_cols=73  Identities=23%  Similarity=0.317  Sum_probs=60.4

Q ss_pred             CCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQS  113 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~  113 (546)
                      .++|++|+.|+...+|+|||+++ +|.|.||+.|..++-.+. +.|-.+.|+...+++||-.||+.|..|....+
T Consensus       849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDG-TDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCC-CCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence            47999999999999999999995 589999999988764332 34446678888899999999999999955443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.56  E-value=0.00036  Score=67.87  Aligned_cols=178  Identities=21%  Similarity=0.149  Sum_probs=109.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhccC--hhhhHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCC
Q 009036          237 KSPQVHEVEEALISLRKLTRSR--EETRVSLCT--PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGL  311 (546)
Q Consensus       237 ~s~~~~~~~~Al~~L~~La~~~--~~~r~~l~~--~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~  311 (546)
                      .+.+|+.|.+|+..|+.+.+.+  ......+.+  ..++..+...+.+....+...|+.++..|+..- ..-..+. ...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            6789999999999999999877  233333332  145566777777777788899999998888742 2222222 347


Q ss_pred             hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch-hHHHHHh
Q 009036          312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS-NRTKLVK  390 (546)
Q Consensus       312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~  390 (546)
                      ++.|+..+.++...++..|..+|..+...-.....+    .++.+...+.+.++.++..++..|..+..... ....+-.
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            899999999999999999999999887654311111    14556666778899999999998888765322 1111111


Q ss_pred             ----cCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          391 ----LGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       391 ----~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                          ...++.+..++.+++  +++.|-.++..+..
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence                246777888888765  88888888887754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3.3e-05  Score=84.50  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP   97 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p   97 (546)
                      -.-+.||.|..=.+|-|++.|||-||-.||+.-++.....||.|...+..-++.|
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            3557899999999999999999999999999988888889999999887767665

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.49  E-value=0.00014  Score=50.49  Aligned_cols=40  Identities=43%  Similarity=0.578  Sum_probs=36.9

Q ss_pred             cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          341 DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       341 ~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      ++++..+.+.|+++.|+++|++.+.++++.|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            4678888999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.47  E-value=0.03  Score=57.79  Aligned_cols=218  Identities=12%  Similarity=0.082  Sum_probs=153.7

Q ss_pred             ChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHHHh-------cCChHHHHHHHccCCHHHHHHHHHHHhhcccc
Q 009036          269 RLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLIVR-------SGLVPPIVDVLMAGSAEAQEHACGAIFSLALD  340 (546)
Q Consensus       269 g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i~~-------~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~  340 (546)
                      ..+..++.++... ..+...-++..+..+-..+..+..+..       .-.-...+.+|...+.-+...+.++|..++..
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            3566677777653 344445555555555444443333321       23467788899999888888888999888765


Q ss_pred             cchhhHHhhcCC-hHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHH
Q 009036          341 DQNKTAIGVLGA-LPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLIL  414 (546)
Q Consensus       341 ~~~k~~i~~~g~-l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L  414 (546)
                      ...+....+... ...|-..+.+ .+.+....|+.+|-.+...++.|..++.+.++..|+..+.+.    .++...+-++
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            433222212111 2233344444 567777889999999999999999999999999999999432    2888999999


Q ss_pred             HHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHHCCcHHHHHHHHhcC
Q 009036          415 GNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL------RFKGLAAAAGMAEVLMRMERVG  488 (546)
Q Consensus       415 ~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~------~~~~~~~~~g~v~~L~~ll~~~  488 (546)
                      +.|.-++...+.+...+.|+.|+++++..  .-+++..-+++++.|++..++      .....+...++.+.+..|.+..
T Consensus       225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  225 WLLTFNPHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHhhcCHHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            99999888887776788999999999985  346777888899999988552      3334567778778777776655

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.45  E-value=0.0008  Score=54.71  Aligned_cols=86  Identities=27%  Similarity=0.353  Sum_probs=70.3

Q ss_pred             HHHHHHHH-ccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036          271 LLALRSLI-ISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV  349 (546)
Q Consensus       271 i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  349 (546)
                      |+.|+..| .++++.++..++.+|.++.          ....++.|+.++++.++.+|..|+.+|..+          +.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence            67899988 7889999999999999542          124689999999999999999999999988          34


Q ss_pred             cCChHHHHHhhccC-CHHHHHHHHHHHH
Q 009036          350 LGALPPLLHLLKSD-SERTQHDSALALY  376 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL~  376 (546)
                      ..+++.|.+++.++ +..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            56899999999875 5556788887763

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.39  E-value=0.011  Score=61.08  Aligned_cols=191  Identities=23%  Similarity=0.240  Sum_probs=133.1

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      ..++.++.++.+.+..++..|...+..+.          ....++.|..+|.+.++.+|..|+.+|..+          +
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence            56888899999999999998888866542          235789999999999999999999977766          4


Q ss_pred             hcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHH-
Q 009036          349 VLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVA-  426 (546)
Q Consensus       349 ~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~-  426 (546)
                      ....++.|+.+|. +.+..++..|+.+|..+-..          .++..|+.++.+..... +...+...  ....|.. 
T Consensus       103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~-a~~~~~~~--~~~~r~~a  169 (335)
T COG1413         103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS-AAAALDAA--LLDVRAAA  169 (335)
T ss_pred             ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh-hhhhccch--HHHHHHHH
Confidence            4668899999998 58899999999999987432          24777888887654211 11111000  0011111 


Q ss_pred             ------HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009036          427 ------VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML  500 (546)
Q Consensus       427 ------i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL  500 (546)
                            +.....++.+...+..   ....++..|+.+|..+....         ..+...+..++.+.+..++..+...|
T Consensus       170 ~~~l~~~~~~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l  237 (335)
T COG1413         170 AEALGELGDPEAIPLLIELLED---EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL  237 (335)
T ss_pred             HHHHHHcCChhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence                  1123477888888888   34688999999988877553         22446677777777777777776666


Q ss_pred             HHhh
Q 009036          501 ELMK  504 (546)
Q Consensus       501 ~~L~  504 (546)
                      ..+-
T Consensus       238 ~~~~  241 (335)
T COG1413         238 GEIG  241 (335)
T ss_pred             cccC
Confidence            5554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.35  E-value=0.0076  Score=64.87  Aligned_cols=219  Identities=17%  Similarity=0.183  Sum_probs=146.4

Q ss_pred             hcCChHHHHHHHHcc---CCHHHHHHHHHHHHHhhcC---CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc
Q 009036          266 CTPRLLLALRSLIIS---RYTNVQVNAVAALVNLSLE---KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL  339 (546)
Q Consensus       266 ~~~g~i~~Lv~lL~s---~~~~v~~~A~~~L~nLs~~---~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~  339 (546)
                      .++.+++.+..+|.+   ....+++.|..+...+-..   ...+      -.++.++.-+.......+..++.+|..|+.
T Consensus       210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            456777777777653   4566776665554433221   1111      245555555544467788899999998877


Q ss_pred             ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhh
Q 009036          340 DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLA  418 (546)
Q Consensus       340 ~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa  418 (546)
                      ....+-......++|.|.+.|-+..+++++.+..+|..++..-+|.. |..  .+|.|++.+.++. ....++..|.   
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~dp~~~~~e~~~~L~---  357 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALADPSCYTPECLDSLG---  357 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcCcccchHHHHHhhc---
Confidence            76666666678899999999999999999999999999998766655 222  5888999998876 5555555543   


Q ss_pred             CCcccHHHHH---hCCcHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhcCC--h-hhHHHHHHCCcHHHHHHHHhcCCHH
Q 009036          419 SCSDGRVAVL---DSGGVECLVGMLRKGT-ELSESTQESCVSVLYALSHGG--L-RFKGLAAAAGMAEVLMRMERVGSEH  491 (546)
Q Consensus       419 ~~~e~r~~i~---~~g~i~~Lv~lL~~~~-~~s~~~~e~Av~~L~~L~~~~--~-~~~~~~~~~g~v~~L~~ll~~~s~~  491 (546)
                           +..++   +.-.+..++.+|.++. ..+...+..++.+.+|+|.--  + .....+-.  .++-|-..+.+.-|+
T Consensus       358 -----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PE  430 (569)
T KOG1242|consen  358 -----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPE  430 (569)
T ss_pred             -----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChh
Confidence                 22232   3345556666665531 134567788999999999832  2 22222222  556677777777899


Q ss_pred             HHHHHHHHHHHh
Q 009036          492 VKEKAKRMLELM  503 (546)
Q Consensus       492 ~k~~A~~lL~~L  503 (546)
                      +|.-|..+|..+
T Consensus       431 vR~vaarAL~~l  442 (569)
T KOG1242|consen  431 VRAVAARALGAL  442 (569)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.021  Score=57.04  Aligned_cols=236  Identities=14%  Similarity=0.116  Sum_probs=166.3

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc-h----HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKI-N----KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK  344 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-n----k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k  344 (546)
                      ..+.|-.-|..++..++.-++..++.+..+.+ |    -..+++.+.++.++..+...+.++-..|...|..++..+..-
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal  162 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL  162 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence            34444444556788888888888887776532 2    223357899999999999999999999999999999888877


Q ss_pred             hHHhhcCChHHH--HHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhC-ch--HHHHHHHHHHHhh
Q 009036          345 TAIGVLGALPPL--LHLLKSDSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNS-GH--MTGRVLLILGNLA  418 (546)
Q Consensus       345 ~~i~~~g~l~~L--v~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~-~~--~~e~al~~L~nLa  418 (546)
                      +.|.....+..+  ..+-..-+.-++...+..+..+.+ .++.....-..|.+..|..-+.. .+  +...++.....|+
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            777766555433  222223344555666677777765 55555666667999888887776 33  7788999999999


Q ss_pred             CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC------C-hhhH-HHHHHCCcHHHHHHHHhcCCH
Q 009036          419 SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG------G-LRFK-GLAAAAGMAEVLMRMERVGSE  490 (546)
Q Consensus       419 ~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~------~-~~~~-~~~~~~g~v~~L~~ll~~~s~  490 (546)
                      ....+|+.+.+.|.|..+..++.... .++-.+-.++.....+...      . +..+ ..+.   .++..++++...++
T Consensus       243 eteHgreflaQeglIdlicnIIsGad-sdPfekfralmgfgkffgkeaimdvseeaicealii---aidgsfEmiEmnDp  318 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGAD-SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII---AIDGSFEMIEMNDP  318 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH---HHHhhHHhhhcCCc
Confidence            99999999999999999999997753 3454555455444443321      1 1111 1221   45667888899999


Q ss_pred             HHHHHHHHHHHHhhcCCcc
Q 009036          491 HVKEKAKRMLELMKGRAEE  509 (546)
Q Consensus       491 ~~k~~A~~lL~~L~~~~~~  509 (546)
                      ...+.|...|-.|-...++
T Consensus       319 daieaAiDalGilGSnteG  337 (524)
T KOG4413|consen  319 DAIEAAIDALGILGSNTEG  337 (524)
T ss_pred             hHHHHHHHHHHhccCCcch
Confidence            9999999999999776543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.04  Score=55.07  Aligned_cols=244  Identities=13%  Similarity=0.077  Sum_probs=164.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhh----hHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREET----RVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~----r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      .+.|-..|..++..++.-++..+..+..+++.|    ...++.+|.++.++..+-..|.++-..|...|..++..+....
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale  163 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE  163 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence            345566677777777788888888877776633    2344578999999999999999999999999999999888888


Q ss_pred             HHHhcCChHHHHH--HHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhc
Q 009036          305 LIVRSGLVPPIVD--VLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSL  380 (546)
Q Consensus       305 ~i~~~g~l~~Lv~--lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~  380 (546)
                      .|.+...++.+-.  +-...+.-+|.....++..+... ++........|.+..|..-|+. ++.-++.+++.....|..
T Consensus       164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae  243 (524)
T KOG4413|consen  164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE  243 (524)
T ss_pred             HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence            8887766554432  22233445555566666555443 3445555567888888877776 566677888889999988


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhh----CCcccHHHHHhC--CcHHHHHHHHccCCCCCHHH
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLA----SCSDGRVAVLDS--GGVECLVGMLRKGTELSEST  450 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa----~~~e~r~~i~~~--g~i~~Lv~lL~~~~~~s~~~  450 (546)
                      .+-.++-+-..|+|..+..++...+    -+-.++.....+-    ...-.-+++.+.  -+|...+.++..   .++..
T Consensus       244 teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm---nDpda  320 (524)
T KOG4413|consen  244 TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM---NDPDA  320 (524)
T ss_pred             HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---CCchH
Confidence            7777877788899999999997533    2333454444333    222222333332  234444555555   46889


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHCC
Q 009036          451 QESCVSVLYALSHGGLRFKGLAAAAG  476 (546)
Q Consensus       451 ~e~Av~~L~~L~~~~~~~~~~~~~~g  476 (546)
                      ++.|+.+|..|.... +..+++...|
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTg  345 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTG  345 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccC
Confidence            999999999887665 3444444444

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.053  Score=56.27  Aligned_cols=255  Identities=17%  Similarity=0.117  Sum_probs=169.5

Q ss_pred             HHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC------ch----HHHHHhcCChHHHH
Q 009036          247 ALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK------IN----KMLIVRSGLVPPIV  316 (546)
Q Consensus       247 Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~------~n----k~~i~~~g~l~~Lv  316 (546)
                      .+..+..+|. -+.....+++..+++.|+.+|.+.+.++....+..|..|...+      +.    -..+++.++++.|+
T Consensus       104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            3444555554 3677788999999999999999999999988888888887532      22    23445678899998


Q ss_pred             HHHccCCHH------HHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCc-hhHH
Q 009036          317 DVLMAGSAE------AQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD--SERTQHDSALALYHLSLVK-SNRT  386 (546)
Q Consensus       317 ~lL~~~~~~------~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~-~n~~  386 (546)
                      .-+..-+..      -..++..++.|+.... +....+.+.|.+.-|+.-+...  -..-+..|..+|.-+..+. +|+.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            877644333      3445667777876654 5566666677777766655432  2234567777777776644 4888


Q ss_pred             HHHhcCcHHHHHHHHhC-----c------hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          387 KLVKLGSVNALLGMVNS-----G------HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~-----~------~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      ......+|..|++-+.-     +      ..-++...+|+.+...+++|..++...+++-..-+++..    ...+..++
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K----k~sr~Sal  338 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK----KVSRGSAL  338 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH----HHhhhhHH
Confidence            88888999999887742     1      145556666776777899999999877776555555541    45678888


Q ss_pred             HHHHHHhcCCh--hhHHHHHHCCcHHHHHHH-HhcCC---------HHHHHHHHHHHHHhhcC
Q 009036          456 SVLYALSHGGL--RFKGLAAAAGMAEVLMRM-ERVGS---------EHVKEKAKRMLELMKGR  506 (546)
Q Consensus       456 ~~L~~L~~~~~--~~~~~~~~~g~v~~L~~l-l~~~s---------~~~k~~A~~lL~~L~~~  506 (546)
                      .+|-....+.+  ..+.-..+.+++..++-+ ++.+.         ...-+....+|+.|...
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            99977766543  444455555666666555 43332         23345555666555543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.018  Score=61.22  Aligned_cols=257  Identities=14%  Similarity=0.081  Sum_probs=169.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhh----cCCchHHHHHhcCC
Q 009036          238 SPQVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLS----LEKINKMLIVRSGL  311 (546)
Q Consensus       238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs----~~~~nk~~i~~~g~  311 (546)
                      .-++..|.--+..|..|-...+  . .++  -..+++-|..+|..++.+++..+-.+|.++-    ..+...   --...
T Consensus       178 ~~n~~tR~flv~Wl~~Lds~P~--~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~  251 (675)
T KOG0212|consen  178 VINPMTRQFLVSWLYVLDSVPD--L-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDM  251 (675)
T ss_pred             cCCchHHHHHHHHHHHHhcCCc--H-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---Ccccc
Confidence            3355566666666665543322  1 111  2346777788888888998876666555443    333332   11356


Q ss_pred             hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCH-HHHHHHHH---HHHHhhcCchhHHH
Q 009036          312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE-RTQHDSAL---ALYHLSLVKSNRTK  387 (546)
Q Consensus       312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~-~~~~~A~~---aL~~Ls~~~~n~~~  387 (546)
                      ++.++.-+++..++++..|..-|..+...........-.|.+..++..+.+... ..+..+..   .|..++........
T Consensus       252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~  331 (675)
T KOG0212|consen  252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE  331 (675)
T ss_pred             hhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc
Confidence            788888899999999999988888776665555555557888888888876543 23333332   35555554444433


Q ss_pred             HHhc-CcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          388 LVKL-GSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       388 iv~~-Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                       ++. ..+..|...+.+..  ++-.++.-+..|-....|.-........+.|++-|.+   .++++...++..|.++|.+
T Consensus       332 -id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  332 -IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICSS  407 (675)
T ss_pred             -cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhcC
Confidence             444 46777888887654  6666777777666655555544556788999999988   5689999999999999986


Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          465 GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       465 ~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      .... ...   ..+..|+++....+.-.+..+.-+++.||-.-+
T Consensus       408 ~~~~-~~~---~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~  447 (675)
T KOG0212|consen  408 SNSP-NLR---KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN  447 (675)
T ss_pred             cccc-cHH---HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence            5332 111   145567777778778888999999999986543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.29  E-value=0.0015  Score=53.16  Aligned_cols=86  Identities=23%  Similarity=0.261  Sum_probs=69.7

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          229 EDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       229 i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      ++.|++.| ++.++.+|..++..|..+..           ..+++.|+.++.++++.++..|+.+|..+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            46788988 88899999999999884322           256999999999999999999999999873          


Q ss_pred             hcCChHHHHHHHccC-CHHHHHHHHHHHh
Q 009036          308 RSGLVPPIVDVLMAG-SAEAQEHACGAIF  335 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~  335 (546)
                      ....++.|.+++.+. +..++..|+.+|.
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            345899999999876 5667888887763

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.011  Score=63.80  Aligned_cols=172  Identities=16%  Similarity=0.124  Sum_probs=126.3

Q ss_pred             CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH--HHh---cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc
Q 009036          268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML--IVR---SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ  342 (546)
Q Consensus       268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~--i~~---~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~  342 (546)
                      +.++|.|..+|.+++...++.|..+|..++.+....-.  ...   .-.+|.++.++++.++.+|..|...+........
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            45899999999999999999999999999875321110  001   1368999999999999999999999987655443


Q ss_pred             hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036          343 NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC  420 (546)
Q Consensus       343 ~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~  420 (546)
                      ..-...-...++.|+.+-.+++++++++.+.+|..|......+-.-.-.++|+.++....+.+  +.-.|+.-...+|..
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            322223356788888888888999999999999999776544332223367777777776644  777888888889988


Q ss_pred             cccHHHHHh--CCcHHHHHHH
Q 009036          421 SDGRVAVLD--SGGVECLVGM  439 (546)
Q Consensus       421 ~e~r~~i~~--~g~i~~Lv~l  439 (546)
                      +-.+..+..  ...||.|+.-
T Consensus       287 pi~~~~L~p~l~kliPvLl~~  307 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSG  307 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHcc
Confidence            866666654  3567777654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.033  Score=60.09  Aligned_cols=221  Identities=14%  Similarity=0.135  Sum_probs=143.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.++..+.+....+|..|....+.+...-+....    .-++|.++.-+..........++..|..++.....+...
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~  291 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL  291 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence            4455566666666777888877777665542111110    123444444444446677788889999888876666666


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      .-..++|.|.++|.+..+++|..+..+|..+...-+|...   ...++.|++.+.+.+..+ ..++..|..-.....   
T Consensus       292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~---  364 (569)
T KOG1242|consen  292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYT-PECLDSLGATTFVAE---  364 (569)
T ss_pred             HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccch-HHHHHhhcceeeeee---
Confidence            6678999999999999999999999999999877666552   236777888887654333 444444443322221   


Q ss_pred             HHHhcCcHHHHHHHHhC------chHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          387 KLVKLGSVNALLGMVNS------GHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~------~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                        |+.-.+..++.+|..      ..+...++.++.|+|..-+....+..  ...+|.|-..+..   ..+++++-+..+|
T Consensus       365 --V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d---~~PEvR~vaarAL  439 (569)
T KOG1242|consen  365 --VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD---AVPEVRAVAARAL  439 (569)
T ss_pred             --ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC---CChhHHHHHHHHH
Confidence              333455556666643      23788899999999986655555543  2234444444444   3588999999999


Q ss_pred             HHHhc
Q 009036          459 YALSH  463 (546)
Q Consensus       459 ~~L~~  463 (546)
                      ..+-.
T Consensus       440 ~~l~e  444 (569)
T KOG1242|consen  440 GALLE  444 (569)
T ss_pred             HHHHH
Confidence            77654

>TIGR02270 conserved hypothetical protein

Probab=97.25  E-value=0.022  Score=60.34  Aligned_cols=181  Identities=14%  Similarity=0.043  Sum_probs=123.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ......|+..|++.++.++..++..+...-            ....+.|..+|.+.++.++..|+.+|..+-        
T Consensus       116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~--------  175 (410)
T TIGR02270       116 RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELP--------  175 (410)
T ss_pred             hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc--------
Confidence            456778889998889988888776554411            234678999999999999999999999764        


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                        ....++.|...+.+.++.+|..|+..|..+          +...++..+..+.......... ++.++..+...+   
T Consensus       176 --~~~a~~~L~~al~d~~~~VR~aA~~al~~l----------G~~~A~~~l~~~~~~~g~~~~~-~l~~~lal~~~~---  239 (410)
T TIGR02270       176 --RRLSESTLRLYLRDSDPEVRFAALEAGLLA----------GSRLAWGVCRRFQVLEGGPHRQ-RLLVLLAVAGGP---  239 (410)
T ss_pred             --cccchHHHHHHHcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHhccCccHHH-HHHHHHHhCCch---
Confidence              345778888889999999999999999666          2233455555544333222222 222222222111   


Q ss_pred             HHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                            .++..|..++.++.++..++.+|..+-          ....++.|+..+..     +.....|..++..|+-
T Consensus       240 ------~a~~~L~~ll~d~~vr~~a~~AlG~lg----------~p~av~~L~~~l~d-----~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       240 ------DAQAWLRELLQAAATRREALRAVGLVG----------DVEAAPWCLEAMRE-----PPWARLAGEAFSLITG  296 (410)
T ss_pred             ------hHHHHHHHHhcChhhHHHHHHHHHHcC----------CcchHHHHHHHhcC-----cHHHHHHHHHHHHhhC
Confidence                  467778888887777777777776533          23577788887766     3466777777766654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0097  Score=63.19  Aligned_cols=278  Identities=15%  Similarity=0.079  Sum_probs=176.7

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH-HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV-SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .+-..+.++..++......+++.|-.+-++-..-+. .+--.++||.|-.-+...++..+...+..|..|-..+.-.-.=
T Consensus       125 ~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~  204 (675)
T KOG0212|consen  125 EIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMIS  204 (675)
T ss_pred             HHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHh
Confidence            333444455444444444555555555543222222 3333567788877777788999988888887765544332111


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                      .-...++.|..+|.+.+.+++..+-.+|.++...=.++....+ ...++.|+.-+.+.++..+..|+.-|..+..-....
T Consensus       205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~  284 (675)
T KOG0212|consen  205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD  284 (675)
T ss_pred             cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence            1234677888888899999998777777655332122222222 457888899999999999988888887776655444


Q ss_pred             HHHHhcCcHHHHHHHHhCch---HHHHHH---HHHHHhhCCcccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          386 TKLVKLGSVNALLGMVNSGH---MTGRVL---LILGNLASCSDGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~---~~e~al---~~L~nLa~~~e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      .-..-.|.+..++.++.+.+   .++.+.   ..|..+++.+..... ++- ..+..+.+.+..   +..+.+-.++..+
T Consensus       285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~---~~~~tri~~L~Wi  360 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD---DREETRIAVLNWI  360 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc---chHHHHHHHHHHH
Confidence            44444577777777776643   333322   235556665555544 443 467777788877   4577888888887


Q ss_pred             HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccc
Q 009036          459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEE  510 (546)
Q Consensus       459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~  510 (546)
                      ..|-...+ .+-..-.......|+.-+.+.++.+-..+..+|..++....+.
T Consensus       361 ~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~  411 (675)
T KOG0212|consen  361 ILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP  411 (675)
T ss_pred             HHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc
Confidence            77755321 2222223346789999999999999999999999999877653

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00016  Score=70.50  Aligned_cols=57  Identities=21%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHH
Q 009036           46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKST  104 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~  104 (546)
                      |.|-||.+.|.+||++.|||+||..|-.+.+. ...+|.+|.+... ....+...|...
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~-g~~~~akeL~~~  298 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH-GSFNVAKELLVS  298 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccc-cCCcceecccccc-cccchHHHHHHH
Confidence            78999999999999999999999999876554 3458999987643 244454444443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0061  Score=64.33  Aligned_cols=194  Identities=14%  Similarity=0.109  Sum_probs=138.5

Q ss_pred             HHHHHHHhhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHH
Q 009036          289 AVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSER  366 (546)
Q Consensus       289 A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~  366 (546)
                      ++..|..++.. ..-|.-+.+..+.++|+++|..++..+..-+...++++..- ...++.+.+.|.|..|+.++.+.+..
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            34445555554 34466667778899999999997777777788888887665 34578888899999999999988889


Q ss_pred             HHHHHHHHHHHhhcCc--hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC----cccHHHHHhCC----cHH
Q 009036          367 TQHDSALALYHLSLVK--SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC----SDGRVAVLDSG----GVE  434 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~--~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~----~e~r~~i~~~g----~i~  434 (546)
                      .+++..|.|++|-.+.  +.+.+.+..-++..++++..++.  +++.++.+|.|+.-.    ++.++.++...    ...
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            9999999999998743  34667788888999999998877  899999999999642    23344444322    345


Q ss_pred             HHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHH-HHHCCcHHHHHHHH
Q 009036          435 CLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL-AAAAGMAEVLMRME  485 (546)
Q Consensus       435 ~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~-~~~~g~v~~L~~ll  485 (546)
                      .|++.++..   ++-..+..+.+|.+++..++..+.. ..+...+..+.+++
T Consensus       569 ~l~~k~e~~---np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         569 RLIDKYEEN---NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHhc---CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            666667663   3455556678888887655455553 44445555554443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.14  Score=58.27  Aligned_cols=252  Identities=15%  Similarity=0.120  Sum_probs=157.1

Q ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036          231 YFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS  309 (546)
Q Consensus       231 ~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~  309 (546)
                      -++..|. ..+.++|.-|+..+..+.. +...-..+++.|.+-.|+.+|.+ -+..++.++.+|..|+...+....-.+.
T Consensus      1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~h 1852 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEH 1852 (2235)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence            3444442 3456778888887766554 45667778888888888888864 5667888999999999987766666778


Q ss_pred             CChHHHHHHHccC-CHHHHHHHHHHHhhccccc--chhhHHhh------------cCChHHHHHhhcc--CCHHH-----
Q 009036          310 GLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD--QNKTAIGV------------LGALPPLLHLLKS--DSERT-----  367 (546)
Q Consensus       310 g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~------------~g~l~~Lv~lL~~--~~~~~-----  367 (546)
                      |++.-+..+|-.. ++..|..|+.+|..|..+.  ..|..|--            ...-++.|+++..  +++++     
T Consensus      1853 g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~ 1932 (2235)
T KOG1789|consen 1853 GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEV 1932 (2235)
T ss_pred             CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHh
Confidence            8888888888754 7899999999999886654  11222211            1112444444433  12211     


Q ss_pred             -HHHHHHHHHH---------------------------------------------------------------------
Q 009036          368 -QHDSALALYH---------------------------------------------------------------------  377 (546)
Q Consensus       368 -~~~A~~aL~~---------------------------------------------------------------------  377 (546)
                       +...-..+..                                                                     
T Consensus      1933 ~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm 2012 (2235)
T KOG1789|consen 1933 TRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELM 2012 (2235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHh
Confidence             0000001111                                                                     


Q ss_pred             -------------------hhcC-chhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHH
Q 009036          378 -------------------LSLV-KSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVEC  435 (546)
Q Consensus       378 -------------------Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~  435 (546)
                                         |... +.-...+-..|-+|.++..+...  .+-..|+++|..|+.+.-..+++....++..
T Consensus      2013 ~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~ 2092 (2235)
T KOG1789|consen 2013 SRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDG 2092 (2235)
T ss_pred             cCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchh
Confidence                               1110 11111222223333333332211  1345688899999988888888988888888


Q ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcC
Q 009036          436 LVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVG  488 (546)
Q Consensus       436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~  488 (546)
                      +++.|+..    ....-.|+.+|-.+... ..+....+...|.++.|+.++...
T Consensus      2093 ~m~~mkK~----~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2093 IMKSMKKQ----PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             hHHHHHhc----chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            99888774    33445788888877663 335555677889999999998754

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.02  E-value=0.011  Score=57.46  Aligned_cols=183  Identities=13%  Similarity=0.054  Sum_probs=109.7

Q ss_pred             ccCCHHHHHHHHHHHhhccccc---chhhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 009036          320 MAGSAEAQEHACGAIFSLALDD---QNKTAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSV  394 (546)
Q Consensus       320 ~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav  394 (546)
                      .+.+-+.|..|+.-|..+....   .....+..  ...+..+...+.+....+.+.|+.+|..|+..-.....-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4457888888888888876554   22233322  245667777777767778899999999988743333332333578


Q ss_pred             HHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCc-HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh----h
Q 009036          395 NALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGG-VECLVGMLRKGTELSESTQESCVSVLYALSHGGL----R  467 (546)
Q Consensus       395 ~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~-i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~----~  467 (546)
                      +.|++.+.++.  +++.|..+|..++..-..-.     .. +..+...+.+   .++..+..++..|..+.....    .
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKS---KNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88888888754  78888899888886443111     11 2333334444   678999999999988866322    2


Q ss_pred             hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccc
Q 009036          468 FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEE  510 (546)
Q Consensus       468 ~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~  510 (546)
                      ......-..+++.+..++.+.++.+|+.|..++..|....++.
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            2221111236789999999999999999999999997654443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.02  E-value=0.08  Score=56.94  Aligned_cols=238  Identities=16%  Similarity=0.167  Sum_probs=154.8

Q ss_pred             CchhHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-----CHHHHHHH
Q 009036          225 SNEQEDYFVQKL----------KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-----YTNVQVNA  289 (546)
Q Consensus       225 ~~~~i~~lv~~L----------~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-----~~~v~~~A  289 (546)
                      +.+.+..|++.=          ...++++..+|++.|.|+...++..|..+++.|..+.++..|+..     +.++.--.
T Consensus        20 ~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~   99 (446)
T PF10165_consen   20 TEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLD   99 (446)
T ss_pred             cHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHH
Confidence            455565555532          345788999999999999999999999999999999999999865     67777778


Q ss_pred             HHHHHHhhc-CCchHHHHHhc-CChHHHHHHHcc-----------------CCHHHHHHHHHHHhhcccccchhhHHhhc
Q 009036          290 VAALVNLSL-EKINKMLIVRS-GLVPPIVDVLMA-----------------GSAEAQEHACGAIFSLALDDQNKTAIGVL  350 (546)
Q Consensus       290 ~~~L~nLs~-~~~nk~~i~~~-g~l~~Lv~lL~~-----------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~  350 (546)
                      .++|.-++. ..+.+..+++. +++..|+..|..                 ...+....++.+|+|+.........-...
T Consensus       100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~  179 (446)
T PF10165_consen  100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFS  179 (446)
T ss_pred             HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhh
Confidence            888776665 45667666644 788888776631                 03345667888999987664332211123


Q ss_pred             CChHHHHHhhcc---------CCHHHHHHHHHHHHHhhcCc-hh-------H----HHHHhcCcHHHHHHHHhCc-----
Q 009036          351 GALPPLLHLLKS---------DSERTQHDSALALYHLSLVK-SN-------R----TKLVKLGSVNALLGMVNSG-----  404 (546)
Q Consensus       351 g~l~~Lv~lL~~---------~~~~~~~~A~~aL~~Ls~~~-~n-------~----~~iv~~Gav~~Lv~lL~~~-----  404 (546)
                      ..++.|+.+|..         ........++.+|.|+-... ..       .    .......++..|+++|...     
T Consensus       180 ~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~  259 (446)
T PF10165_consen  180 PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE  259 (446)
T ss_pred             HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence            455555555431         13456677778888772110 00       0    0112225677777777531     


Q ss_pred             --h---HHHHHHHHHHHhhCCcc-cHHHHHh---------------C-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          405 --H---MTGRVLLILGNLASCSD-GRVAVLD---------------S-GGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       405 --~---~~e~al~~L~nLa~~~e-~r~~i~~---------------~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                        .   ...-.+.+|.+++...+ .|..+..               . ..-..|++++.+.   ....+..+...|+.||
T Consensus       260 ~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~---~~~~k~~vaellf~Lc  336 (446)
T PF10165_consen  260 ALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP---DPQLKDAVAELLFVLC  336 (446)
T ss_pred             cccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC---CchHHHHHHHHHHHHH
Confidence              1   23346677777776533 3333222               2 2457788888773   3789999999999999


Q ss_pred             cCC
Q 009036          463 HGG  465 (546)
Q Consensus       463 ~~~  465 (546)
                      ..+
T Consensus       337 ~~d  339 (446)
T PF10165_consen  337 KED  339 (446)
T ss_pred             hhh
Confidence            764

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.95  E-value=0.00032  Score=64.09  Aligned_cols=43  Identities=30%  Similarity=0.392  Sum_probs=35.8

Q ss_pred             eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTT   89 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~   89 (546)
                      |.|-||.+-++.||++.|||.||-.|..+-.+. ...|-+|+..
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKA  239 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchh
Confidence            999999999999999999999999998775543 3467677654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.90  E-value=0.00032  Score=71.28  Aligned_cols=32  Identities=34%  Similarity=0.788  Sum_probs=29.3

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHH
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHV   74 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~   74 (546)
                      .+++.||||...|+||+|++|||+.||.|-..
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~   33 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARN   33 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHh
Confidence            46889999999999999999999999999753

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.027  Score=63.65  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=112.5

Q ss_pred             HHHHHHHHhhcccc-cchhhHHhh----cCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHH
Q 009036          327 QEHACGAIFSLALD-DQNKTAIGV----LGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGM  400 (546)
Q Consensus       327 ~~~Aa~~L~~Ls~~-~~~k~~i~~----~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~l  400 (546)
                      ...++.+|.|+... ++....++.    .|.++.++..|+. +++++.+.|+.++.-+..+.+.-..|++.|.+..|+.+
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence            45677888887654 444444432    4788888888875 57889999999999999999999999999999999999


Q ss_pred             HhC-chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          401 VNS-GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       401 L~~-~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      |.+ ++.++.++.+|..|++.++-..+.+++|++..+..++...  .++..+..|+..|..|..+
T Consensus      1822 LHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1822 LHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhhc
Confidence            987 5699999999999999999888888999999999999875  4578888899999998763

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.87  E-value=0.039  Score=54.99  Aligned_cols=232  Identities=15%  Similarity=0.125  Sum_probs=158.5

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH-hcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHh
Q 009036          272 LALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV-RSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       272 ~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~-~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      ..|-++++.-+.-.+--|+.+|.++...++.|..+- +...-..+++++++.  ..+++-+..-+++.|+...+..+.|-
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~  231 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDID  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence            334445555566677778899999988877766654 555678889999864  78999999999999999887776664


Q ss_pred             h-cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHhCc-----h-------HHHH---
Q 009036          349 V-LGALPPLLHLLKSD-SERTQHDSALALYHLSLV--KSNRTKLVKLGSVNALLGMVNSG-----H-------MTGR---  409 (546)
Q Consensus       349 ~-~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~~~-----~-------~~e~---  409 (546)
                      . ...+..|+.+++.. ..++-+.++..+.|++.-  ......+.-.|-+..-++.|..+     +       +++.   
T Consensus       232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~  311 (432)
T COG5231         232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ  311 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence            4 46788888888764 556778888999999872  24555666666555555555432     1       1111   


Q ss_pred             ---HHHHHHH----h-----hCC---------cccHHHHHhCC--cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036          410 ---VLLILGN----L-----ASC---------SDGRVAVLDSG--GVECLVGMLRKGTELSESTQESCVSVLYALSHGGL  466 (546)
Q Consensus       410 ---al~~L~n----L-----a~~---------~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~  466 (546)
                         -+.+..+    |     +-.         ..+...+.+.+  .+..|.++|....+ + ..-.-|+.-+..+....+
T Consensus       312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~-n-t~i~vAc~Di~~~Vr~~P  389 (432)
T COG5231         312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNP-N-TWICVACSDIFQLVRASP  389 (432)
T ss_pred             hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCC-C-ceEeeeHhhHHHHHHhCc
Confidence               1112211    1     111         23455565543  67888888887532 2 122345555666666667


Q ss_pred             hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       467 ~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      +...++..-|+-..++.++.+.++++|-.|..+++.+-.
T Consensus       390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            888888888999999999999999999999999987753

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.15  Score=55.92  Aligned_cols=139  Identities=13%  Similarity=0.194  Sum_probs=73.5

Q ss_pred             ChHHHHHHHccCC-HHHHHHHHHHHh--hcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          311 LVPPIVDVLMAGS-AEAQEHACGAIF--SLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       311 ~l~~Lv~lL~~~~-~~~~~~Aa~~L~--~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      .+++|..++.+.. ..+.-....++.  +++.. ++.-+.+.  =+++.|-.++.+.++.++-.++.++..+...+.   
T Consensus       257 Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp---  331 (877)
T KOG1059|consen  257 LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP---  331 (877)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH---
Confidence            5667777776652 222223333322  22222 12222221  156677777888889998888888888876432   


Q ss_pred             HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ..|.+ --..++.+|.+.+  ++-+|+..|.-+..- +|-.+     ++..|+..+...+  ....+...+.-+..+|.
T Consensus       332 ~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e-----IVk~LM~~~~~ae--~t~yrdell~~II~iCS  401 (877)
T KOG1059|consen  332 KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSK-KNLME-----IVKTLMKHVEKAE--GTNYRDELLTRIISICS  401 (877)
T ss_pred             HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH-----HHHHHHHHHHhcc--chhHHHHHHHHHHHHhh
Confidence            22322 2334567777654  888899888776642 22222     2345555544422  12333344444445555

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.82  E-value=0.19  Score=57.27  Aligned_cols=236  Identities=22%  Similarity=0.165  Sum_probs=149.5

Q ss_pred             HhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc----cCC----HHHHHHH
Q 009036          264 SLCTPRLLLALRSLIIS-----RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM----AGS----AEAQEHA  330 (546)
Q Consensus       264 ~l~~~g~i~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~----~~~----~~~~~~A  330 (546)
                      .+.+.|++..|+.++.+     .+.......+.+|...++-..||..+.+.++++.|++.|.    ...    .++-+..
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            44567999999999875     2334555566666666777899999999999999999885    323    5666777


Q ss_pred             HHHHhhcccccchhhH---Hh--h--------cCChHHHHHhhccC----CHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 009036          331 CGAIFSLALDDQNKTA---IG--V--------LGALPPLLHLLKSD----SERTQHDSALALYHLSLVKSNRTKLVKLGS  393 (546)
Q Consensus       331 a~~L~~Ls~~~~~k~~---i~--~--------~g~l~~Lv~lL~~~----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Ga  393 (546)
                      ..++..|.........   ..  .        ..-+..|++.+.+.    ++.+....+++|-+|+......        
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------  263 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------  263 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------
Confidence            7777666443221100   00  1        11255555555543    6778888888999988755443        


Q ss_pred             HHHHHHHHhC---------c--hHHHHHHHHHHHhhC----Cc---ccHHHHHhCCcHHHHHHHHccCCC-----CCHHH
Q 009036          394 VNALLGMVNS---------G--HMTGRVLLILGNLAS----CS---DGRVAVLDSGGVECLVGMLRKGTE-----LSEST  450 (546)
Q Consensus       394 v~~Lv~lL~~---------~--~~~e~al~~L~nLa~----~~---e~r~~i~~~g~i~~Lv~lL~~~~~-----~s~~~  450 (546)
                      +..|++.+..         .  .--...+..++.++.    +.   .-|+.+++.|++...+++|....+     .+++-
T Consensus       264 m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW  343 (802)
T PF13764_consen  264 MDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW  343 (802)
T ss_pred             HHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence            2233333321         0  011223555555543    22   237889999999988888866432     22332


Q ss_pred             --------HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhcCCc
Q 009036          451 --------QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       451 --------~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~  508 (546)
                              ...++..|.-||.+....+.+ ...++++.|..|-+.. +..+-..|-.+|..|+....
T Consensus       344 k~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  344 KEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence                    346888999999876555544 4456788888885544 56677778888888877443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00072  Score=64.02  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             CCCceeCcccccccCCCeecCCCccccHHHHHHHH
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCK   76 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~   76 (546)
                      +-+.=+|.+|++.++|||+++.||-|||+||.+++
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i   74 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI   74 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence            44455899999999999999999999999998876

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0008  Score=65.82  Aligned_cols=47  Identities=17%  Similarity=0.042  Sum_probs=40.8

Q ss_pred             eCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 009036           47 LCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS   93 (546)
Q Consensus        47 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~   93 (546)
                      .|+||..-|--||.+.|+|.||.-||+--...+...|++|+.+++++
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999775445566899999998763

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.77  E-value=0.0029  Score=43.34  Aligned_cols=38  Identities=34%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009036          260 ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLS  297 (546)
Q Consensus       260 ~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs  297 (546)
                      .++..+.+.|+++.|+.+|.+++.+++..++++|.||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            47888999999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=0.061  Score=61.10  Aligned_cols=177  Identities=13%  Similarity=0.030  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhhcCCchHHHHHhcCChHHHHHHHcc
Q 009036          243 EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV-NLSLEKINKMLIVRSGLVPPIVDVLMA  321 (546)
Q Consensus       243 ~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~nk~~i~~~g~l~~Lv~lL~~  321 (546)
                      -|..|+..|..+..-.+-....-..-|..|.+++||+++-.+++.--+-+=. -|+.++..+..+++.++-.-.+.+|..
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            3666777777777666666666668899999999999998888765544433 356688888889988777777788876


Q ss_pred             C---CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHH
Q 009036          322 G---SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL-VKSNRTKLVKLGSVN  395 (546)
Q Consensus       322 ~---~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~  395 (546)
                      +   ++|-|..|+-+|..+...- -.+....+.+.+..=+..|.++ .+-.+.-++.+|..|-. +.++|-.=++.++..
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence            3   6788999999999887764 3455556667777666777775 46677777778888865 566777777889999


Q ss_pred             HHHHHHhCc--hHHHHHHHHHHHhhC
Q 009036          396 ALLGMVNSG--HMTGRVLLILGNLAS  419 (546)
Q Consensus       396 ~Lv~lL~~~--~~~e~al~~L~nLa~  419 (546)
                      .|+.+|.+.  +++..|+-+|..+-.
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            999999975  488888888888776

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.019  Score=62.05  Aligned_cols=252  Identities=16%  Similarity=0.144  Sum_probs=157.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH---Hhhc---C-C
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV---NLSL---E-K  300 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~---nLs~---~-~  300 (546)
                      +...++....+.+..++..|++.|..|.....-.      +-.....++++...+..++..|+.++.   |...   . +
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            3444777778888888999999888777532111      123556778888889999998876654   4431   1 1


Q ss_pred             chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      .+..++. ..++..+++.+.+.+..+|..|+.+|..+-...+  +.|.+ -.=+.+..-|+..  +........|+.=-.
T Consensus       273 ~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe--e~i~Q-TLdKKlms~lRRk--r~ahkrpk~l~s~Ge  346 (823)
T KOG2259|consen  273 SEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE--EIIQQ-TLDKKLMSRLRRK--RTAHKRPKALYSSGE  346 (823)
T ss_pred             hhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH--HHHHH-HHHHHHhhhhhhh--hhcccchHHHHhcCC
Confidence            2233333 3478899999999999999999999987743221  11111 1111222211110  111112222222110


Q ss_pred             ---------------CchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC
Q 009036          381 ---------------VKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG  443 (546)
Q Consensus       381 ---------------~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~  443 (546)
                                     .++.-..++..|+--.++.-|.+.  +++..|+..|+.|+....+-.    ..++..|++++.+ 
T Consensus       347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfND-  421 (823)
T KOG2259|consen  347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFND-  421 (823)
T ss_pred             cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhcc-
Confidence                           122345577888888899888774  489999999999986433211    1356788999887 


Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          444 TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       444 ~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                        ....++..|+.+|..++..      +..++.-++.++.-+.+-++++|+....+|+...
T Consensus       422 --E~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  422 --EIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR  474 (823)
T ss_pred             --HHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence              4578999999999888754      2222234567777777777888877777776654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.12  Score=57.25  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh-cCCc
Q 009036          434 ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK-GRAE  508 (546)
Q Consensus       434 ~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~-~~~~  508 (546)
                      ..+++.|++   .+..++..|+..+..|...+ .++.      .++-|++++...++..|...+.-+-.+. ++.+
T Consensus       353 ~tIleCL~D---pD~SIkrralELs~~lvn~~-Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP  418 (866)
T KOG1062|consen  353 STILECLKD---PDVSIKRRALELSYALVNES-NVRV------MVKELLEFLESSDEDFKADIASKIAELAEKFAP  418 (866)
T ss_pred             HHHHHHhcC---CcHHHHHHHHHHHHHHhccc-cHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            356666777   46788888888888887654 3333      3456777777777777755554444443 3444

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.69  E-value=0.00078  Score=70.20  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=43.2

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDFS   93 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~   93 (546)
                      -.+..|-+|.+.-.||+..+|.|+|||-||..+...    .+-+||.|..+++-.
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            366789999999999999999999999999888753    234999998877653

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.67  E-value=0.0038  Score=42.70  Aligned_cols=39  Identities=41%  Similarity=0.547  Sum_probs=35.3

Q ss_pred             chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          342 QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       342 ~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      +++..+.+.|+++.|+++|.+++.++++.|+++|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467778889999999999999899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0019  Score=62.39  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=37.9

Q ss_pred             CceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~   91 (546)
                      .+-.||+|++-=.-|-++ +|||.||.-||..-+... .-+||.|+....
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            445699999999999887 599999999998755433 448999987543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.22  Score=55.09  Aligned_cols=272  Identities=14%  Similarity=0.051  Sum_probs=170.2

Q ss_pred             hHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcC-Cc
Q 009036          228 QEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLII--SRYTNVQVNAVAALVNLSLE-KI  301 (546)
Q Consensus       228 ~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~-~~  301 (546)
                      .+..+++...... ...+..++..|..++.+-+..  .+.  .+.++-.++.-..  .++..++-.|+.+|.|--.. ..
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~  207 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA  207 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3444555543333 347788899999988763322  222  2445555555443  35778999999999874321 11


Q ss_pred             hHHHHHhcC-ChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036          302 NKMLIVRSG-LVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       302 nk~~i~~~g-~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                      |-..=.+.. ++...++.-++.+.+++..|...|..+.... +.-........+..-+.-++++++++...++..=.++|
T Consensus       208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic  287 (859)
T KOG1241|consen  208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC  287 (859)
T ss_pred             hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            111111222 4566777778889999999999998775542 33222222334555556677889999888887777676


Q ss_pred             cCch-----------------hHHHHHhc--CcHHHHHHHHhCc------h---HHHHHHHHHHHhhCCcccHHHHHhCC
Q 009036          380 LVKS-----------------NRTKLVKL--GSVNALLGMVNSG------H---MTGRVLLILGNLASCSDGRVAVLDSG  431 (546)
Q Consensus       380 ~~~~-----------------n~~~iv~~--Gav~~Lv~lL~~~------~---~~e~al~~L~nLa~~~e~r~~i~~~g  431 (546)
                      ...-                 +..-+..+  +++|.|+++|...      +   ....|-.+|..++.+       +...
T Consensus       288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~  360 (859)
T KOG1241|consen  288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDD  360 (859)
T ss_pred             HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hccc
Confidence            4210                 11111111  6778888888641      1   445555555555432       2234


Q ss_pred             cHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          432 GVECLVGMLRKG-TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       432 ~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      +++.++..+... ...+-+-++.|+.++..+-.+.+..+..-...++++.++.++.+.+--+|+-+.+.|-.+++.-.
T Consensus       361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            555665555531 22456778999999998888766555555556789999999999999999999999998887665

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.0011  Score=73.06  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=40.5

Q ss_pred             CCCceeCcccccccCC-----CeecCCCccccHHHHHHHHhcCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMAD-----PVVVSSGHTFERACAHVCKTLGFTPTLVDGT   88 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~d-----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~   88 (546)
                      ...+-.|+||.|.|..     |=.++|||.|+..|+..|++. ..+||.|+.
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~  338 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRT  338 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchh
Confidence            3457789999999999     788999999999999999996 558998876

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.50  E-value=0.0027  Score=50.94  Aligned_cols=49  Identities=18%  Similarity=0.141  Sum_probs=37.0

Q ss_pred             CCceeCcccccccCC-Ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMAD-PVVV-SSGHTFERACAHVCKTLG--FTPTLVDGTTPD   91 (546)
Q Consensus        43 p~~~~CpI~~~~m~d-PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~   91 (546)
                      +-+-.||.|...=.| |+++ .|||.|-..||.+|++..  ...||.|+++..
T Consensus        30 ~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   30 PFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            334456666666555 7666 999999999999999863  458999988643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.41  E-value=0.0027  Score=65.06  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=45.3

Q ss_pred             eeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           46 FLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      +.|.|++++=++||+- .+||.|+|+-|++++.. +..||+++++++..+|+|-
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I   53 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI   53 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence            5799999999999997 78999999999999874 4468889999988888874

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.35  E-value=0.13  Score=57.77  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=94.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHH
Q 009036          236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPI  315 (546)
Q Consensus       236 L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~L  315 (546)
                      |.+++...+..|++.+-.....++..-      -..+-+++...+.|.+++.-.--=|.+.+........+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            444555566666665543222222211      12444555555667776665544455555432222111    34555


Q ss_pred             HHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHH
Q 009036          316 VDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVN  395 (546)
Q Consensus       316 v~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~  395 (546)
                      ..=|++.++.+|..|+++|..|-.    ++.+  ...++++.+++.++++.+|+.|+.++.++=.  -.+....+.|.+.
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~  169 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRV----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLID  169 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcCh----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHH
Confidence            666667777787777777776621    1111  2356677777777777787777777777633  2344455567777


Q ss_pred             HHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          396 ALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       396 ~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      .+..++.+.+  +...|+.+|..+..
T Consensus       170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         170 ILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHhch
Confidence            7777776543  66677777776654

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.34  E-value=0.26  Score=54.30  Aligned_cols=260  Identities=13%  Similarity=0.108  Sum_probs=154.6

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      ....+..++..|++.++.++.+|+..+..++.--..  --+.+...|.  .|.+-|...++++.-..+.+|..+...- .
T Consensus       797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-g  873 (1172)
T KOG0213|consen  797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-G  873 (1172)
T ss_pred             hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-c
Confidence            346677888899999999999999999988863110  1112333333  3566777888888765555554433211 0


Q ss_pred             HHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036          303 KMLIV--RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       303 k~~i~--~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                      ..++.  -.+.+|.|.-+|++...+++++...++..++..........+ ...--.|+++|+..+.+.+++|..++..++
T Consensus       874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            00111  237899999999999999999999999998875422211111 234457888999888899999998887765


Q ss_pred             cCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH-h-CC---cHHHHHHHHccCCCCCHHHHHHH
Q 009036          380 LVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL-D-SG---GVECLVGMLRKGTELSESTQESC  454 (546)
Q Consensus       380 ~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~-~-~g---~i~~Lv~lL~~~~~~s~~~~e~A  454 (546)
                      ..         -|--..|.-+|.+-.+++.=..+=.      .-..+|+ + .|   ++|.|+.--+.   ....+|.-.
T Consensus       954 ka---------IGPqdVLatLlnnLkvqeRq~RvcT------tvaIaIVaE~c~pFtVLPalmneYrt---Pe~nVQnGV 1015 (1172)
T KOG0213|consen  954 KA---------IGPQDVLATLLNNLKVQERQNRVCT------TVAIAIVAETCGPFTVLPALMNEYRT---PEANVQNGV 1015 (1172)
T ss_pred             Hh---------cCHHHHHHHHHhcchHHHHHhchhh------hhhhhhhhhhcCchhhhHHHHhhccC---chhHHHHhH
Confidence            42         1333445555544333332111100      0011222 2 22   44555444444   334556555


Q ss_pred             HHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          455 VSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       455 v~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +.+|.-+... .+..+..+-.  +.+.|...+.+.+.--|.-|..+++.|+=..
T Consensus      1016 Lkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            5555444431 1122222222  4567777788888888999999999987443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.33  E-value=0.081  Score=48.06  Aligned_cols=124  Identities=12%  Similarity=0.200  Sum_probs=96.1

Q ss_pred             HHHHHhcCcHHHHHHHHhCch--------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                      ..+++..|++..|++++.++.        ....+|.++..|-...---=..++...|..++.++.... .+..+.+.|++
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~-~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSA-MDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccc-ccchHHHHHHH
Confidence            456788899999999998743        445577777777664321223445567888888887643 36788999999


Q ss_pred             HHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036          457 VLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE  509 (546)
Q Consensus       457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~  509 (546)
                      +|-+++..+...-..+.++=-++.|+..++..++.++.+|..++-.|-...++
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999998877677777777789999999999999999999999888866643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.32  E-value=0.2  Score=56.62  Aligned_cols=265  Identities=16%  Similarity=0.133  Sum_probs=137.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhc
Q 009036          231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRS  309 (546)
Q Consensus       231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~  309 (546)
                      .|++++.+++.+.|-=|...|..-...+..+-..=-+..++..|+.+|...+.++|..|+.+|+-|+.. .+.+..    
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----
Confidence            677788888888887777666543322211111111356899999999999999999999999988743 222211    


Q ss_pred             CChHHHHHHHccCCHHHHHHH-HHHHhhcccccchhhHHhhcCChHHHHHhhcc------CCHHHHHHHHHHHHHhhc-C
Q 009036          310 GLVPPIVDVLMAGSAEAQEHA-CGAIFSLALDDQNKTAIGVLGALPPLLHLLKS------DSERTQHDSALALYHLSL-V  381 (546)
Q Consensus       310 g~l~~Lv~lL~~~~~~~~~~A-a~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~------~~~~~~~~A~~aL~~Ls~-~  381 (546)
                      ..++.|+.-+-++....+-.+ ..+....+..+..........+.+.+...|..      +...++-.++..|..+-+ .
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            133444444344444444322 22222233222211111223344444444433      222355555555444322 1


Q ss_pred             chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 009036          382 KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY  459 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~  459 (546)
                      ...-.. ...+....++.-+....  ++.+++.+|..|+..- ++..+.  +.+..|++-|...  .......--+..|.
T Consensus       165 g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~--~li~~Ll~~L~~~--~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  165 GTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV--ELIEHLLKGLSNR--TQMSATRTYIQCLA  238 (1233)
T ss_pred             cccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHhccCCC--CchHHHHHHHHHHH
Confidence            111111 12234444554454443  8899999999998632 222222  3445555555443  23344444456666


Q ss_pred             HHhcCCh-hhHHHHHHCCcHHHHHHHH---hcCCHHHHHHHHHHHHHhhcCC
Q 009036          460 ALSHGGL-RFKGLAAAAGMAEVLMRME---RVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       460 ~L~~~~~-~~~~~~~~~g~v~~L~~ll---~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+|.... +...-.  ...++.+....   +...++.|+...+.|..+-...
T Consensus       239 ~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc  288 (1233)
T KOG1824|consen  239 AICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC  288 (1233)
T ss_pred             HHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence            6665321 111111  12566777776   6667788888877776665433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.29  E-value=0.023  Score=47.63  Aligned_cols=67  Identities=13%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036          407 TGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA  474 (546)
Q Consensus       407 ~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~  474 (546)
                      +...+.+|.||| .++..++.+.+.|+|+.++..-.-. ..+|-.+|+|+.++.+||.++++.+..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            556889999999 4778889999999999999886443 257999999999999999999888886654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0033  Score=63.90  Aligned_cols=46  Identities=15%  Similarity=0.070  Sum_probs=39.4

Q ss_pred             eeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        46 ~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      +.|-||+|-|++=   ++|||+|.|=..||..|+-+.++.||+|++...
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            7999999998753   457999999999999999888778999987543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.028  Score=60.91  Aligned_cols=239  Identities=17%  Similarity=0.087  Sum_probs=151.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc------chh
Q 009036          271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD------QNK  344 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~------~~k  344 (546)
                      +.-|..+..+.|..++..|+..|+.|+....--     .-.....++.|++....+|..|..+++......      ++-
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            333666677788889999999988876522111     123567788889888999999988877553321      111


Q ss_pred             hHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhCchHH-HHHHHHHHHh-----
Q 009036          345 TAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGMVNSGHMT-GRVLLILGNL-----  417 (546)
Q Consensus       345 ~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~~~~~-e~al~~L~nL-----  417 (546)
                      ..=....++..+.+.+.+.+..++..|+.+|..+-... +.-.+..+.    .++.-+...... +..-....+.     
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhhhcccchHHHHhcCCcccC
Confidence            11112347778888888888888888888888765422 222222221    222212111111 1111222222     


Q ss_pred             ----h-----CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036          418 ----A-----SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG  488 (546)
Q Consensus       418 ----a-----~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~  488 (546)
                          +     ..+++-..|+.+|+-.++|.=|.+   .--+++..|+..|+.|+..++.+...     .+..|+.|+.+.
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE  422 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE  422 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence                0     023345667888888888888877   33689999999999999876655543     468999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCCcccccc-CChHHHHhcCCcc
Q 009036          489 SEHVKEKAKRMLELMKGRAEEEEEG-VDWDELLDSGLVS  526 (546)
Q Consensus       489 s~~~k~~A~~lL~~L~~~~~~~~~~-~~~~~~~~~~~~~  526 (546)
                      -..+|.+|...|+.++..-...++. ..+-+.+++..+.
T Consensus       423 ~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~d  461 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVD  461 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHH
Confidence            9999999999999999876655532 2334444444443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.18  E-value=0.056  Score=51.07  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhc----------------CcHHHHHHHHhCc--------hHHHHHHHHHHHhhCCc
Q 009036          366 RTQHDSALALYHLSLVKSNRTKLVKL----------------GSVNALLGMVNSG--------HMTGRVLLILGNLASCS  421 (546)
Q Consensus       366 ~~~~~A~~aL~~Ls~~~~n~~~iv~~----------------Gav~~Lv~lL~~~--------~~~e~al~~L~nLa~~~  421 (546)
                      .....++.+|.||+...+.+..++..                ..+..|++++..+        +.......+|.||+..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            34467788999999888777766544                2677788887652        15677999999999999


Q ss_pred             ccHHHHHhC--Cc--HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--CCcHHHHHHHHh
Q 009036          422 DGRVAVLDS--GG--VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA--AGMAEVLMRMER  486 (546)
Q Consensus       422 e~r~~i~~~--g~--i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~--~g~v~~L~~ll~  486 (546)
                      +||..+++.  +.  +..|+..+..   .+..-+.-++++|.|+|.+......++..  .++++.|+.-+.
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~---~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEH---KSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhcc---CcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999999963  34  5666666665   46788899999999999877656555543  356666666655

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.16  E-value=0.0048  Score=59.34  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             CceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDG   87 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~   87 (546)
                      -.++|||+......||+- .|||.|+|..|...+... ..-||+-+
T Consensus       175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g  220 (262)
T KOG2979|consen  175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG  220 (262)
T ss_pred             hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence            457899999999999996 999999999999887642 33677643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.15  E-value=0.0099  Score=43.84  Aligned_cols=55  Identities=25%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          324 AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       324 ~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      +.+|..|+.+|.+++........-....+++.|+.+|++++..++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999876654433334567899999999999999999999999865

...

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=1.5  Score=48.57  Aligned_cols=213  Identities=16%  Similarity=0.167  Sum_probs=137.8

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM  304 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~  304 (546)
                      ...+.++.+|.+..+-++.+|+-.|..+.-.-+ ..|.      .+|.|++=|..+|+.++..|+.++..|+. ++.|-.
T Consensus       144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            445788999999999999999999887654433 3443      47899999999999999999999999998 577763


Q ss_pred             HHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHH--Hhhc
Q 009036          305 LIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALY--HLSL  380 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~--~Ls~  380 (546)
                      .     .-|.+.++|... +-=+......+..+|+-..   ..++ ...+++|..++.+.. ..+.-+++.++.  +++.
T Consensus       218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence            3     457777777644 2222233344444454322   1122 247888888887732 122223333222  3333


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      ...+....+.. ++..|-.++.+.  +++...+-++..+... +..   +..+.  ..+++.|.+   .++.++-.|+..
T Consensus       289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vqa~k--dlIlrcL~D---kD~SIRlrALdL  359 (877)
T KOG1059|consen  289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQAHK--DLILRCLDD---KDESIRLRALDL  359 (877)
T ss_pred             CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HHHhH--HHHHHHhcc---CCchhHHHHHHH
Confidence            33344444444 677777777664  4888888888777753 222   11222  456777777   567899999999


Q ss_pred             HHHHhc
Q 009036          458 LYALSH  463 (546)
Q Consensus       458 L~~L~~  463 (546)
                      |..+..
T Consensus       360 l~gmVs  365 (877)
T KOG1059|consen  360 LYGMVS  365 (877)
T ss_pred             HHHHhh
Confidence            988875

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.03  E-value=0.18  Score=45.87  Aligned_cols=116  Identities=16%  Similarity=0.133  Sum_probs=90.7

Q ss_pred             HHhhcCChHHHHHhhccCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHH
Q 009036          346 AIGVLGALPPLLHLLKSDS------ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILG  415 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~~~------~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~  415 (546)
                      .+...+++..|++++.++.      .+....++.++.+|-...-.--..++...|...+.++..    .++...|+.+|.
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            3456789999999999875      366677888888887665545556666677777777764    348889999999


Q ss_pred             HhhCCcccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          416 NLASCSDGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       416 nLa~~~e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      ++..+.......++. =.++.|+..|..   .+++.+.+|+..+-.|...
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~---~~~~iq~naiaLinAL~~k  132 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQV---SNQEIQTNAIALINALFLK  132 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHc---CCHHHHHHHHHHHHHHHhc
Confidence            999888776666654 478999999998   4689999999999888763

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.99  E-value=0.74  Score=49.56  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036          229 EDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       229 i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~  299 (546)
                      .++|-..|++.-..++.++++.+..++.++-  -..++ ...+..|-.+|.+.....|-.|+++|-.|+..
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~  333 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK  333 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence            3455556666668899999999999887651  11111 13577788888999999999999999988864

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.99  E-value=0.006  Score=60.68  Aligned_cols=54  Identities=22%  Similarity=0.389  Sum_probs=42.4

Q ss_pred             CCCceeCcccccccCC--Ce-ec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036           42 PPGEFLCPVSGSLMAD--PV-VV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP   97 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~d--PV-~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p   97 (546)
                      -...|.|||++..|..  +. .+ +|||.|+..+|.+- . ....||.|+.++...+++|
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEEE
Confidence            4578999999999954  33 34 99999999999775 2 2446999999998777654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.93  E-value=0.62  Score=50.50  Aligned_cols=263  Identities=11%  Similarity=0.087  Sum_probs=150.7

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC---
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE---  299 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~---  299 (546)
                      ....+..+++.|++..++++..|+.....|++--..  --..+...|.  .|.+-|...++++.-..+.++..+...   
T Consensus       602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~  679 (975)
T COG5181         602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRF  679 (975)
T ss_pred             hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence            356778899999999999999999988887753110  0112222222  345566677888876666666554332   


Q ss_pred             CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      ...+..  -.|.+|.|.-+|++...++..+...++..++..........+ ...--.|+++|++-+.+.+++|...+..+
T Consensus       680 ~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         680 RSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             cccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            111111  247999999999999999999999999988876533222222 23445788999999999999999888776


Q ss_pred             hcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHH-h-CCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          379 SLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVL-D-SGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       379 s~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~-~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                      +..-         |--..|.-+|.+-.+++.-..+=..+      ...++ + .|-...|-.+|..-......+|.-.+.
T Consensus       758 s~ai---------GPqdvL~~LlnnLkvqeRq~Rvctsv------aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         758 SRAI---------GPQDVLDILLNNLKVQERQQRVCTSV------AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             Hhhc---------CHHHHHHHHHhcchHHHHHhhhhhhh------hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHH
Confidence            5421         33333444444333333211111000      01122 2 232222222333322233445554444


Q ss_pred             HHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          457 VLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       457 ~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      +++-+... ....+..+-.  ..+.|-..+.+.++--|.-|..+++.|.=.+.
T Consensus       823 am~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         823 AMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            44433321 1112222221  34566666777788888889999988874443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=0.1  Score=57.70  Aligned_cols=71  Identities=23%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~  299 (546)
                      +..+..+.+.+++.++.+|..|+-.+.++-..   ........|+++.|..++.+.++.+..+|+.+|..+...
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            45678899999999999999998888777654   456667899999999999999999999999999988764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.54  Score=52.41  Aligned_cols=257  Identities=14%  Similarity=0.155  Sum_probs=133.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch------
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN------  302 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n------  302 (546)
                      ..+.+-|++++.-++.-|+..|.+++..  +..     ..+.|-+.++|.+.++.++..|+.+...+-.. ++-      
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~--Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~  182 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSP--EMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI  182 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCH--HHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH
Confidence            3455567888888888999999888753  222     24567788899999999999998887765543 332      


Q ss_pred             --HHHHHhc--C----ChHHHHHHHccCCH------HHHHHHHHHHhhcccccch----hhHHhhc---CChHHHHHhhc
Q 009036          303 --KMLIVRS--G----LVPPIVDVLMAGSA------EAQEHACGAIFSLALDDQN----KTAIGVL---GALPPLLHLLK  361 (546)
Q Consensus       303 --k~~i~~~--g----~l~~Lv~lL~~~~~------~~~~~Aa~~L~~Ls~~~~~----k~~i~~~---g~l~~Lv~lL~  361 (546)
                        +..+.+.  |    ++..+.+++..+..      .+...-..+|.++....-.    -.-|-++   =-+-.|+++|.
T Consensus       183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence              2223221  2    23444444443211      1223334445444332110    0000000   01113344455


Q ss_pred             cCCHHHHHHHHHHHHHhhcC---chhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHH
Q 009036          362 SDSERTQHDSALALYHLSLV---KSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVG  438 (546)
Q Consensus       362 ~~~~~~~~~A~~aL~~Ls~~---~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~  438 (546)
                      .++++....--.+|..++..   ..|....+-...|..+..+..+..+++.|+.+|...-.+.++-...+   ++..|.+
T Consensus       263 q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYv---aLn~L~r  339 (866)
T KOG1062|consen  263 QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYV---ALNMLLR  339 (866)
T ss_pred             CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeee---ehhhHHh
Confidence            55555555555566666552   23444444445666666666666677777777766655443222111   3445555


Q ss_pred             HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          439 MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       439 lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .+..   +...++.+=..++..|-.-+...+.-     +++.+..++..  ..++....++|..|...
T Consensus       340 ~V~~---d~~avqrHr~tIleCL~DpD~SIkrr-----alELs~~lvn~--~Nv~~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  340 VVQQ---DPTAVQRHRSTILECLKDPDVSIKRR-----ALELSYALVNE--SNVRVMVKELLEFLESS  397 (866)
T ss_pred             hhcC---CcHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence            5544   23455555555555443222222222     23444444433  44556666777776665

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=1  Score=49.69  Aligned_cols=244  Identities=15%  Similarity=0.143  Sum_probs=143.1

Q ss_pred             HHHHhcCCCC--HHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-C-chHHH
Q 009036          231 YFVQKLKSPQ--VHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-K-INKML  305 (546)
Q Consensus       231 ~lv~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~-~nk~~  305 (546)
                      .+-+.|-+++  .-++.+|+-.|..|.+.+++    ++. .+-...++.+|...+-.+.-.+...+..|++. + +.+..
T Consensus       150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~  225 (938)
T KOG1077|consen  150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTC  225 (938)
T ss_pred             hhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhh
Confidence            3445554443  23455555555556655443    222 24577888899888877777777777777764 2 23322


Q ss_pred             HHhcCChHHHHHHHcc-------------CCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhcc----CCH-
Q 009036          306 IVRSGLVPPIVDVLMA-------------GSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKS----DSE-  365 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~-------------~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~----~~~-  365 (546)
                      +-.  .+..|..+...             ..|=++...+++|.++-..++.  +..+.  ..++.++...++    .+. 
T Consensus       226 ~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq  301 (938)
T KOG1077|consen  226 LPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQ  301 (938)
T ss_pred             HHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchH
Confidence            211  12222222111             2455777888888887443333  33332  345555555542    111 


Q ss_pred             --HHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHH
Q 009036          366 --RTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGML  440 (546)
Q Consensus       366 --~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL  440 (546)
                        .++...+.-..+|.. .++....+++  ++..|-.+|.+.+  ++..++..++.||++....+++..+  ...++..|
T Consensus       302 ~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sL  377 (938)
T KOG1077|consen  302 HSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSL  377 (938)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHh
Confidence              122222222333433 3344444554  5888999998754  8999999999999998777777766  67788888


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHH
Q 009036          441 RKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEK  495 (546)
Q Consensus       441 ~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~  495 (546)
                      +..  .+-.++..|+..|+.+|..+ ..+.      ++.-|+..+.+-+..+|+.
T Consensus       378 kte--rDvSirrravDLLY~mcD~~-Nak~------IV~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  378 KTE--RDVSIRRRAVDLLYAMCDVS-NAKQ------IVAELLQYLETADYSIREE  423 (938)
T ss_pred             ccc--cchHHHHHHHHHHHHHhchh-hHHH------HHHHHHHHHhhcchHHHHH
Confidence            854  45678999999999999643 2333      2345556666666655543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.31  Score=56.41  Aligned_cols=217  Identities=16%  Similarity=0.126  Sum_probs=129.0

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCchHHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhhcCChHH
Q 009036          280 SRYTNVQVNAVAALVNLSLEKINKMLIVRS--GLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPP  355 (546)
Q Consensus       280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~--g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~  355 (546)
                      +.+..+|..+..+|..++..+.......+.  .+...|...+++.....+..++.+|..|-...  +....+  ...|+.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence            457889999999999988775444333221  23344555555556666777777776654332  333333  235555


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcC------cHHHHHHHHhCc---h-HHHHHHHHHHHhhCCcccHH
Q 009036          356 LLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLG------SVNALLGMVNSG---H-MTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       356 Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~G------av~~Lv~lL~~~---~-~~e~al~~L~nLa~~~e~r~  425 (546)
                      ++-.++..+...++.|..+|..|+.    .....+.|      .|...+.+|..+   + ....+.. |..+...-..-.
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~  817 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFK  817 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHh
Confidence            5555677788999999999999873    11222222      455555555443   2 2222221 222211111112


Q ss_pred             HHHhCCcHHHH----HHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009036          426 AVLDSGGVECL----VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE  501 (546)
Q Consensus       426 ~i~~~g~i~~L----v~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~  501 (546)
                      .+++.+.+..+    ...|.+   .++++...|++.+..++..-+...-.--.+-+++.++.+.++.+-.+|.+...+|.
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            23333333444    334444   46899999999999888754333222222236789999999999999999999998


Q ss_pred             HhhcC
Q 009036          502 LMKGR  506 (546)
Q Consensus       502 ~L~~~  506 (546)
                      .|.+.
T Consensus       895 kLirk  899 (1176)
T KOG1248|consen  895 KLIRK  899 (1176)
T ss_pred             HHHHH
Confidence            88653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.81  E-value=0.36  Score=55.20  Aligned_cols=194  Identities=14%  Similarity=0.121  Sum_probs=137.8

Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhh-cccccchhhHHhhcCChHHHHHhhcc-C--CHHHHHHHHHHHHHhhc-Cc
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFS-LALDDQNKTAIGVLGALPPLLHLLKS-D--SERTQHDSALALYHLSL-VK  382 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~--~~~~~~~A~~aL~~Ls~-~~  382 (546)
                      .-|++|-++++|++...|+|..-+-+=.. |+.++..+..+...++-.-++..|.. .  +++-+..|+-+|..++. +.
T Consensus       510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~  589 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK  589 (1387)
T ss_pred             ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence            45899999999999999988655544443 55666667777777777777888876 2  56778888889999887 45


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      -.++...+.+.+..-++.|.++.   ++.=++-+|..|=. .+++|-.-++.++...|..+|.+   ..++++..|+.+|
T Consensus       590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD---~vpEVRaAAVFAL  666 (1387)
T KOG1517|consen  590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD---PVPEVRAAAVFAL  666 (1387)
T ss_pred             hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC---ccHHHHHHHHHHH
Confidence            56777788899998889998752   44445555665543 45555555678899999999988   4589999999999


Q ss_pred             HHHhcC----ChhhHHHH-----------HHCCcHH----HHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          459 YALSHG----GLRFKGLA-----------AAAGMAE----VLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       459 ~~L~~~----~~~~~~~~-----------~~~g~v~----~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ..+-..    .++....+           .-+..+.    .|+.+++.+++-++......|..+.
T Consensus       667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            888663    11111111           1122232    6677788999999887777776664

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.80  E-value=0.043  Score=46.08  Aligned_cols=61  Identities=11%  Similarity=0.095  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHH--HhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          451 QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       451 ~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~l--l~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      +...+.+|.+||..+...+..+++.|+++.++..  ....+|-+|+.|..++++|+...++.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ   65 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ   65 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence            5668899999999999999999999999999997  445589999999999999999887666

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0065  Score=59.46  Aligned_cols=47  Identities=19%  Similarity=0.136  Sum_probs=38.1

Q ss_pred             eeCcccccccC--CCe-ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMA--DPV-VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        46 ~~CpI~~~~m~--dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ..|-||+.=|.  |-+ ++||.|.|-+.||++|+..-...||+|+..+++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            56999987653  444 579999999999999998666689999877654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.69  E-value=0.54  Score=45.49  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHHH
Q 009036          243 EVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-----SRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPPI  315 (546)
Q Consensus       243 ~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-----s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~L  315 (546)
                      -...|+..|+-++.+ ++.|..+..+.+=-.|-.+|.     .+....+-.++.+|..|.+.+  +.-..+...++||..
T Consensus        95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            355677777777765 578888887776555666665     246678889999999998853  344555678999999


Q ss_pred             HHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--------cCChHHHH-HhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          316 VDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--------LGALPPLL-HLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       316 v~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~l~~Lv-~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      +.++..|+...+..|..++..+..++..-..|.+        .-.+..++ ++.+.++.++.++++++..+|+.++..|.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999988887754443322        12333333 33445789999999999999998887665


Q ss_pred             HHHh
Q 009036          387 KLVK  390 (546)
Q Consensus       387 ~iv~  390 (546)
                      .+..
T Consensus       254 aL~~  257 (293)
T KOG3036|consen  254 ALRS  257 (293)
T ss_pred             HHHh
Confidence            5543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.64  E-value=0.02  Score=42.12  Aligned_cols=55  Identities=20%  Similarity=0.145  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036          283 TNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL  337 (546)
Q Consensus       283 ~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L  337 (546)
                      +.++..|+.+|.+++........-....+++.|+.+|++.++.+|..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4678999999999887644443334456899999999999999999999999875

...

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.01  Score=58.88  Aligned_cols=50  Identities=26%  Similarity=0.435  Sum_probs=41.5

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      ..|+.-.||+|++--.+|-++ -+|..||..||-.+.. ....||+|+.+..
T Consensus       296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS  346 (357)
T ss_pred             CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence            456788899999998888777 4599999999999887 5668999877654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.61  E-value=0.062  Score=50.76  Aligned_cols=110  Identities=12%  Similarity=0.051  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCchHHHHHhc----------------CChHHHHHHHccC------CHHHHHHHHHHHhhccc
Q 009036          282 YTNVQVNAVAALVNLSLEKINKMLIVRS----------------GLVPPIVDVLMAG------SAEAQEHACGAIFSLAL  339 (546)
Q Consensus       282 ~~~v~~~A~~~L~nLs~~~~nk~~i~~~----------------g~l~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~  339 (546)
                      +......++++|.||+..+.....+.+.                ..+..|+..+..|      ...-..+.+.+|.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            3344566788888888877766654322                2577788877662      33456788999999999


Q ss_pred             ccchhhHHhh--cCC--hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 009036          340 DDQNKTAIGV--LGA--LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL  391 (546)
Q Consensus       340 ~~~~k~~i~~--~g~--l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~  391 (546)
                      ..+.|..+.+  .+.  +..|+.++.+.+..-+.-++.+|.|.|...+....+...
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            9999999976  345  788888888887777778889999999988888888774

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=1.4  Score=49.12  Aligned_cols=206  Identities=14%  Similarity=0.130  Sum_probs=132.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS  309 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~  309 (546)
                      ..|..+|.+.....+.+|.+.|..+...+...      ....|.+++-..+.+.+++.-.---|+.-+.+..+-..    
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----
Confidence            67888999998888999998887655444332      23578889999999999987766666655543332211    


Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh-HHHH
Q 009036          310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN-RTKL  388 (546)
Q Consensus       310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n-~~~i  388 (546)
                      =-|..+-+-|++.++.+|..|+++|..+=      ..+...=++-++-+...+.++.+|+.|+.||-.|=+-+.+ +.++
T Consensus       108 LSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL  181 (968)
T KOG1060|consen  108 LSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL  181 (968)
T ss_pred             eeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence            13566777889999999999999998762      2222222223333445566899999999999888654433 3332


Q ss_pred             HhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          389 VKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       389 v~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                           +..+=.+|.+.+  +.-.|+.+...+|-  +. -.++ ++--..|.++|..   .++..|-..+..|..-|+
T Consensus       182 -----~e~I~~LLaD~splVvgsAv~AF~evCP--er-ldLI-HknyrklC~ll~d---vdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  182 -----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ER-LDLI-HKNYRKLCRLLPD---VDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             -----HHHHHHHhcCCCCcchhHHHHHHHHhch--hH-HHHh-hHHHHHHHhhccc---hhhhhHHHHHHHHHHHHH
Confidence                 334445566654  66677777776653  22 2222 2334566666666   345667777777766665

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.49  E-value=1  Score=45.94  Aligned_cols=190  Identities=16%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcC---chhHHHH
Q 009036          314 PIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLV---KSNRTKL  388 (546)
Q Consensus       314 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~---~~n~~~i  388 (546)
                      ..+..|...+.+.|+.++..|..+.........+..  ...+..+.+.++.+..+-+..|+.++.-|+..   ......+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            334445555677777777777766544333333322  34677888888887766666677766666553   3455555


Q ss_pred             HhcCcHHHHHHHHhCch----HHHHHHHHHHHhh---CCc-ccHHHHHhCCcHHHHH--HHHccCC-------CCCHHHH
Q 009036          389 VKLGSVNALLGMVNSGH----MTGRVLLILGNLA---SCS-DGRVAVLDSGGVECLV--GMLRKGT-------ELSESTQ  451 (546)
Q Consensus       389 v~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa---~~~-e~r~~i~~~g~i~~Lv--~lL~~~~-------~~s~~~~  451 (546)
                      .+. +.+.|..++.++.    .+..|+.+|..++   ... +.....+  ..+..+.  .++....       ..++.+.
T Consensus       127 ~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  127 FEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            554 7888888888754    3344444444443   221 1122111  1222111  1122211       1124566


Q ss_pred             HHHHHHHHHHhcC-Ch-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          452 ESCVSVLYALSHG-GL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       452 e~Av~~L~~L~~~-~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      -.|+....-|... +. .....+..  .++.|..++.+.+..+|..|-+.|-.|-+...
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            6666665555432 21 23333333  68999999999999999999999999876544

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=0.92  Score=50.39  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=101.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++++-..+++++|..+..|+.....+....+..+..=...+++|.++.++..+..-++..+.+.|..++..-.  ..+
T Consensus       364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~  441 (859)
T KOG1241|consen  364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAI  441 (859)
T ss_pred             hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhc
Confidence            345566668999999999999999999888766666655567889999999998888888999999998887522  222


Q ss_pred             HhcCChHHHHHHHccC---CHHHHHHHHHHHhhccccc-----ch-hhHHhhcCChHHHHHhhc----c--C-CHHHHHH
Q 009036          307 VRSGLVPPIVDVLMAG---SAEAQEHACGAIFSLALDD-----QN-KTAIGVLGALPPLLHLLK----S--D-SERTQHD  370 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~-----~~-k~~i~~~g~l~~Lv~lL~----~--~-~~~~~~~  370 (546)
                      .....++.++..|-.+   .|.+-.++++++.+|+..-     .+ ...... ...+.++.-|-    .  + ...+|..
T Consensus       442 ~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  442 INQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             ccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence            2222344444444333   6888899999999997431     11 111111 23334443332    1  1 3357778


Q ss_pred             HHHHHHHhhcC
Q 009036          371 SALALYHLSLV  381 (546)
Q Consensus       371 A~~aL~~Ls~~  381 (546)
                      |-.+|..|-.+
T Consensus       521 AYeALmElIk~  531 (859)
T KOG1241|consen  521 AYEALMELIKN  531 (859)
T ss_pred             HHHHHHHHHHc
Confidence            88899888663

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.17  E-value=0.85  Score=50.81  Aligned_cols=260  Identities=15%  Similarity=0.140  Sum_probs=148.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc---
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KI---  301 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~---  301 (546)
                      ....+++-..|++....+..+|++.+..+...+.   +.+..  ++..|-.+|.++...+|-.|.++|..++.. +.   
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~  318 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT  318 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence            3556777788888899999999999998886543   22222  788888899999999999999999988763 21   


Q ss_pred             --hH--HHHH-hc---CChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHh-------------hcCChHHHHH
Q 009036          302 --NK--MLIV-RS---GLVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIG-------------VLGALPPLLH  358 (546)
Q Consensus       302 --nk--~~i~-~~---g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~-------------~~g~l~~Lv~  358 (546)
                        |+  +.++ ..   =....+..+|+.|+.+....-..-+.++..+  +++|..+.             ..+.+..|..
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~  398 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN  398 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence              11  1111 11   1234555666766544443333333333221  22222111             1223334444


Q ss_pred             hhcc-CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHH
Q 009036          359 LLKS-DSERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECL  436 (546)
Q Consensus       359 lL~~-~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~L  436 (546)
                      +|+. +.-+-++....++..+.. .++.|..     +...|.+.+.+......+..+|..|-.  ||-........|..+
T Consensus       399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~Pskyir~i  471 (865)
T KOG1078|consen  399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNPSKYIRFI  471 (865)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCcchhhHHH
Confidence            4443 233444555555444433 2222222     344556666665555566666655542  111111112234444


Q ss_pred             HHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          437 VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       437 v~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      .+.+.-   .+..++..|+.+|.++..+.+..+.     .+.-.|.+.+.+.++.+|+.|...|+.+.+
T Consensus       472 yNRviL---En~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  472 YNRVIL---ENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhhhh---hhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            443322   2356788888888888744332222     234466667888899999999999999984

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.16  E-value=1.1  Score=50.05  Aligned_cols=235  Identities=14%  Similarity=0.124  Sum_probs=141.4

Q ss_pred             ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhhcCCchHHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHh
Q 009036          258 REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALV-NLSLEKINKMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIF  335 (546)
Q Consensus       258 ~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~-nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~  335 (546)
                      ....|...++.|+...|+.+...........+..+|. .+.. +..+.    ...++++...+++... --.-.++.+|.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            3455667778999999999988777777777777776 2221 11221    2356666666655421 12246677888


Q ss_pred             hcccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-HHHHhc-CcHHHHHHHHhCch--HHHHH
Q 009036          336 SLALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR-TKLVKL-GSVNALLGMVNSGH--MTGRV  410 (546)
Q Consensus       336 ~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~-Gav~~Lv~lL~~~~--~~e~a  410 (546)
                      ||+..++ .|..|...-+++.+-.++-.+++..+..++..+.||...+..- ..+++. ...+.....+....  ..-.+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            8887764 4666776666666666677788999999999999998866543 334443 34444444444322  33344


Q ss_pred             HHHHHHhhCCcccHHH-HHh-CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC
Q 009036          411 LLILGNLASCSDGRVA-VLD-SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG  488 (546)
Q Consensus       411 l~~L~nLa~~~e~r~~-i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~  488 (546)
                      .+++..+....++.-. +.+ ......++.++.+   .+..+|...+.+..++.....+....+.+...+..+..+....
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~  724 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN  724 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            4555544443333222 333 4566777788877   4578888888888887665545555444444555555554333


Q ss_pred             CHHHHHHHHHHH
Q 009036          489 SEHVKEKAKRML  500 (546)
Q Consensus       489 s~~~k~~A~~lL  500 (546)
                      -...++.|...|
T Consensus       725 ~a~~~~~~~~~l  736 (748)
T KOG4151|consen  725 RAPKREDAAPCL  736 (748)
T ss_pred             hhhhhhhhhhHH
Confidence            333344444433

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.12  E-value=0.38  Score=51.46  Aligned_cols=158  Identities=15%  Similarity=0.209  Sum_probs=112.0

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch------HHHHHHHHHHHhhCCcccHHH
Q 009036          353 LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH------MTGRVLLILGNLASCSDGRVA  426 (546)
Q Consensus       353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~------~~e~al~~L~nLa~~~e~r~~  426 (546)
                      ...+.+++.+++...+..|+.-|..|+........++....+..|..++.++.      +...++.++..|-...--.=.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            34566778888888888999999999999999999999999999999998865      233344444443322110000


Q ss_pred             HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       427 i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .+...+|...+.+..-. ..+..+-..|+.+|-++..++....+.+.++--+..|+..++..+.++..+|..++..|...
T Consensus       165 ~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             ecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            11222344444443211 01234568899999888887777778888888899999999999999999999999988776


Q ss_pred             Ccccc
Q 009036          507 AEEEE  511 (546)
Q Consensus       507 ~~~~~  511 (546)
                      .+++.
T Consensus       244 a~~~~  248 (713)
T KOG2999|consen  244 APDDK  248 (713)
T ss_pred             CChHH
Confidence            65543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.09  E-value=0.014  Score=60.23  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=35.8

Q ss_pred             eeCcccccccCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        46 ~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      -.||+|++=|-+-|    ++.|-|+|--.|+.+|   +..+||+|+....
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w---~~~scpvcR~~q~  222 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW---WDSSCPVCRYCQS  222 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhc---ccCcChhhhhhcC
Confidence            37999999998887    4699999999999999   4557888876543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.06  E-value=0.26  Score=55.47  Aligned_cols=141  Identities=14%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.+++...+.+.+.++-.-..|...++..++- ..+    +++.+.+=+.++++.+|..|++.+..|-..     .+
T Consensus        55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~-----el  124 (757)
T COG5096          55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-ALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVK-----EL  124 (757)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChH-----HH
Confidence            34566677666667776666666666677665521 111    367777788899999999999988865321     11


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      . ..+++++.+.+.++++.+|..|+-++..+-..  .+..+.+.|.+..+..++.+.++.++.+|+.+|..+..
T Consensus       125 ~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         125 L-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             H-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            1 23688899999999999999999999988533  24445667888888899999999999999999998854

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.02  Score=54.52  Aligned_cols=53  Identities=17%  Similarity=0.327  Sum_probs=44.1

Q ss_pred             CceeCcccccccCCCe----ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036           44 GEFLCPVSGSLMADPV----VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP   97 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p   97 (546)
                      ..|.||+|.+.+.+-+    .-+|||.|+..|.++.+. +..-||+|..++...++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence            5689999999988753    349999999999999876 3347888999999888877

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.86  E-value=0.069  Score=46.05  Aligned_cols=71  Identities=17%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             chhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009036          226 NEQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNL  296 (546)
Q Consensus       226 ~~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nL  296 (546)
                      -..+..|++.| ++.++....-|+..|..+.+..+..|..+.+.|+-..++.++.++|++++.+|+.++..|
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            45678888888 555777788899999999999999999998999999999999999999999999988765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=0.016  Score=59.18  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             eeCcccccccCCC-----eecCCCccccHHHHHHHHhcCC-CCCCCCCCCCCCCCCcccHHHHHHH---HHHHHHc
Q 009036           46 FLCPVSGSLMADP-----VVVSSGHTFERACAHVCKTLGF-TPTLVDGTTPDFSTVIPNLALKSTI---LNWCHKQ  112 (546)
Q Consensus        46 ~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn~~l~~~i---~~~~~~~  112 (546)
                      -.||||++-..-|     |++.|||-|-..||++|+-+.. .-||.|.-.-....++|-+++|...   +.||...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rle   80 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRLE   80 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4699999988877     5679999999999999995322 2688887666667888888877654   4555443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.77  E-value=1  Score=45.67  Aligned_cols=188  Identities=20%  Similarity=0.134  Sum_probs=118.2

Q ss_pred             ChHHHHH-HHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hh
Q 009036          269 RLLLALR-SLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KT  345 (546)
Q Consensus       269 g~i~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~  345 (546)
                      +.+.-|+ ..+.+.++.+++.|+.+|+-.+.-+..   ++ ...++.+...+..++.+++..|+.+|+-+......  -.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            4444444 677889999999999999988774431   11 13577888888888999999999999987554321  11


Q ss_pred             -------HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-----HHHHHHHH
Q 009036          346 -------AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-----MTGRVLLI  413 (546)
Q Consensus       346 -------~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-----~~e~al~~  413 (546)
                             .......+..+.+.|.+.+++++..|+..++.|-..+....   ...++..|+-+--++.     --.+++..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                   11224567788888888899999999999999876543322   1234445554444432     22334433


Q ss_pred             -HHHhhCCcccHHHHHhCCcHHHHHHHHccCCCC-CHH---HHHHHHHHHHHHhc
Q 009036          414 -LGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL-SES---TQESCVSVLYALSH  463 (546)
Q Consensus       414 -L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~-s~~---~~e~Av~~L~~L~~  463 (546)
                       +-..|......+..+....++.+-.+....... ++.   .-.+.+..+..++.
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~  233 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD  233 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence             445566555556666677777777766653210 111   12355566666654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.77  E-value=0.2  Score=54.16  Aligned_cols=227  Identities=11%  Similarity=0.106  Sum_probs=126.4

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhc---CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhH
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSL---EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTA  346 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~  346 (546)
                      .+..++.+|++..+.+++.|+.....|+.   ....-+.+...|.|  |-+-|....+++.-..+.+++.+......+..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            45556668888999999999877766654   22222233333322  44455566788877777777766544332211


Q ss_pred             H-hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc
Q 009036          347 I-GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNS--GHMTGRVLLILGNLASCSD  422 (546)
Q Consensus       347 i-~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e  422 (546)
                      - -..|.+|.|..+|++..+++..+.+..+..+|.......-.-+. ..--.|+++|.+  ++++..|...+..++.-- 
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai-  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI-  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc-
Confidence            1 12589999999999999999999988888888754432111121 233446666665  348888888887776421 


Q ss_pred             cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC---------hhhHHHHHHCCcHHHHHHHHhcCCHHHH
Q 009036          423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG---------LRFKGLAAAAGMAEVLMRMERVGSEHVK  493 (546)
Q Consensus       423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~---------~~~~~~~~~~g~v~~L~~ll~~~s~~~k  493 (546)
                           .-.+++..|++-|+..+.........|+++....|.--         -..-....+.|+++.+..+.+.-....+
T Consensus       762 -----GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~  836 (975)
T COG5181         762 -----GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL  836 (975)
T ss_pred             -----CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence                 11223334444343311001112234455555544311         1112234456666666666555444445


Q ss_pred             HHHHHHHHHhh
Q 009036          494 EKAKRMLELMK  504 (546)
Q Consensus       494 ~~A~~lL~~L~  504 (546)
                      ...-.++-+|.
T Consensus       837 dYvy~itPlle  847 (975)
T COG5181         837 DYVYSITPLLE  847 (975)
T ss_pred             HHHHHhhHHHH
Confidence            55555444444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.77  E-value=0.26  Score=54.27  Aligned_cols=145  Identities=14%  Similarity=0.213  Sum_probs=99.4

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH---HHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcccHHHH
Q 009036          353 LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT---KLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAV  427 (546)
Q Consensus       353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~---~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~r~~i  427 (546)
                      +..++..|++.++.++..|+.++..|+..-.+|.   .|...|.|  |.+.|..  +++.-..+++|..++..-. -..+
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvig-m~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIG-MTKM  877 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcc-cccc
Confidence            4456677888899999999999998876544442   33333544  6677754  3355555555555553211 1111


Q ss_pred             H--hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036          428 L--DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR---FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL  502 (546)
Q Consensus       428 ~--~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~---~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~  502 (546)
                      .  -.+.+|.|.-+|++   ...+++++++..+..+|..+++   .++-++   +---|++++...+..+|+.|...+-.
T Consensus       878 ~pPi~dllPrltPILkn---rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKN---RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGY  951 (1172)
T ss_pred             CCChhhhcccchHhhhh---hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            1  14688999999999   4589999999999999985432   333332   23467888999999999999999988


Q ss_pred             hhcC
Q 009036          503 MKGR  506 (546)
Q Consensus       503 L~~~  506 (546)
                      +++.
T Consensus       952 Iaka  955 (1172)
T KOG0213|consen  952 IAKA  955 (1172)
T ss_pred             HHHh
Confidence            8863

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.74  E-value=2.1  Score=41.58  Aligned_cols=143  Identities=15%  Similarity=0.131  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHh
Q 009036          287 VNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHL  359 (546)
Q Consensus       287 ~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~l  359 (546)
                      -+|+..|--++.+++.|..+.++.+---|-.+|..+     ..-+|..+.+++..|...++.  -..+...+.++..++.
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            467777778889999999999886544444455432     356889999999999877654  3333568999999999


Q ss_pred             hccCCHHHHHHHHHHHHHhhcCchh----HHHHHhcCcH----HHHHHHH-hCch--HHHHHHHHHHHhhCCcccHHHHH
Q 009036          360 LKSDSERTQHDSALALYHLSLVKSN----RTKLVKLGSV----NALLGMV-NSGH--MTGRVLLILGNLASCSDGRVAVL  428 (546)
Q Consensus       360 L~~~~~~~~~~A~~aL~~Ls~~~~n----~~~iv~~Gav----~~Lv~lL-~~~~--~~e~al~~L~nLa~~~e~r~~i~  428 (546)
                      +..++...+..|..++-.+-.++..    |+..-+.-+|    ..++.-+ ..++  +...++.+..+|+.++..|.++.
T Consensus       177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~  256 (293)
T KOG3036|consen  177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR  256 (293)
T ss_pred             HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999998888888777766554432    2222121222    2222222 2233  77889999999999998888876


Q ss_pred             h
Q 009036          429 D  429 (546)
Q Consensus       429 ~  429 (546)
                      .
T Consensus       257 ~  257 (293)
T KOG3036|consen  257 S  257 (293)
T ss_pred             h
Confidence            4

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.61  E-value=2  Score=43.29  Aligned_cols=218  Identities=14%  Similarity=0.127  Sum_probs=137.8

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCchHHHHHhc-CChHHHH
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIV  316 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-g~l~~Lv  316 (546)
                      +.-.+.-|+..|.++....+.......+...-..++..++.  ++.++|-+.+-++..|..++.....|-+. ..+..|+
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            44567778888888877543333333456566667777765  46788999999988888876665444332 4677777


Q ss_pred             HHHccC-CHHHHHHHHHHHhhcccccchhhHHhh---cCChHHHHHhhccC---CHHHHHHHHH----------------
Q 009036          317 DVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGV---LGALPPLLHLLKSD---SERTQHDSAL----------------  373 (546)
Q Consensus       317 ~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~---~g~l~~Lv~lL~~~---~~~~~~~A~~----------------  373 (546)
                      .+.+.. ...+-.-.++++.++.. ...|..|..   .|-+.+-+++|...   +.+.+...-.                
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            777765 56677778888888865 223344433   34444555555432   3333221110                


Q ss_pred             -HHHHh-----h---------cCchhHHHHHhc--CcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036          374 -ALYHL-----S---------LVKSNRTKLVKL--GSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGG  432 (546)
Q Consensus       374 -aL~~L-----s---------~~~~n~~~iv~~--Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~  432 (546)
                       -+..|     +         .+..|..++.+.  ..++.|.+++....    ++-.+-.+...+-..||++..+...|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence             11111     1         123466666665  67888899887632    233333333333457899999999999


Q ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 009036          433 VECLVGMLRKGTELSESTQESCVSVLYAL  461 (546)
Q Consensus       433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L  461 (546)
                      -..+++++.+   ++++++-.|+.++..+
T Consensus       401 k~~im~L~nh---~d~~VkfeAl~a~q~~  426 (432)
T COG5231         401 KEIIMNLINH---DDDDVKFEALQALQTC  426 (432)
T ss_pred             HHHHHHHhcC---CCchhhHHHHHHHHHH
Confidence            9999999998   5688999999887654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.57  E-value=1.6  Score=42.78  Aligned_cols=232  Identities=19%  Similarity=0.205  Sum_probs=121.4

Q ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          230 DYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       230 ~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      +.+.+.|  ++.....+-+|+..|+++...           +.+..+.+...+++.....+.+-.|..+          .
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~----------~   64 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQM----------Q   64 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhh----------c
Confidence            3444444  333455666777777766543           2244444444333333333333333332          2


Q ss_pred             hcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch--
Q 009036          308 RSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS--  383 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~--  383 (546)
                      ....++.|+.+|...  .+-+|..|+.+|..+. +         ...++.|-+..++....++..+..||..+-..+.  
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            345677788777654  4566777777777663 2         2233333333333334444444444444421100  


Q ss_pred             ----------hHHHH-HhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCC------------cc--cHHH----HH--
Q 009036          384 ----------NRTKL-VKLGSVNALLGMVNSGH----MTGRVLLILGNLASC------------SD--GRVA----VL--  428 (546)
Q Consensus       384 ----------n~~~i-v~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~------------~e--~r~~----i~--  428 (546)
                                +-.+. ...+-|..|-..|.+..    -+..|+-.|.|+-..            +.  -|..    +.  
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl  214 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQL  214 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhc
Confidence                      00000 11122444444444322    233455555544210            00  0111    11  


Q ss_pred             -hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          429 -DSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       429 -~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                       ..-.|+.|.+.|.... ..+-++..|+.+|..++...           +++.|.+.+.+..+-+++.+.-.|..+-
T Consensus       215 ~s~~ai~~L~k~L~d~~-E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  215 QSPAAIPSLIKVLLDET-EHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             cchhhhHHHHHHHHhhh-cchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence             1236888888887753 46788889999998776432           6788889999988888888888887664

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.47  E-value=4.5  Score=46.49  Aligned_cols=214  Identities=14%  Similarity=0.088  Sum_probs=124.2

Q ss_pred             chhHHHHHHhcCCC-----CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc----cCC----HHHHHHHHHH
Q 009036          226 NEQEDYFVQKLKSP-----QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII----SRY----TNVQVNAVAA  292 (546)
Q Consensus       226 ~~~i~~lv~~L~s~-----~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~----s~~----~~v~~~A~~~  292 (546)
                      .++++.++..|.+.     ..+.-...++.|+..++- ..||+.+.+.|+++.|+..|.    .+.    ..+-+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            46677777777432     222233345555555554 789999999999999998774    333    5666666666


Q ss_pred             HHHhhcCCchHHH-H----Hhc--------CChHHHHHHHccC----CHHHHHHHHHHHhhcccccchhhHHhhcCChHH
Q 009036          293 LVNLSLEKINKML-I----VRS--------GLVPPIVDVLMAG----SAEAQEHACGAIFSLALDDQNKTAIGVLGALPP  355 (546)
Q Consensus       293 L~nLs~~~~nk~~-i----~~~--------g~l~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~  355 (546)
                      +..|..+...... .    ...        .-+..|+..+.+.    ++.+....+++|-+|+..++.+...... -+.+
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F~p  273 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HFKP  273 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HHHH
Confidence            6554432111000 0    011        1256666666543    6888899999999998876443222110 1122


Q ss_pred             HHHhhccC---CHHHHHHHHHHHHHhhcC-------chhHHHHHhcCcHHHHHHHHhCc----------h--------HH
Q 009036          356 LLHLLKSD---SERTQHDSALALYHLSLV-------KSNRTKLVKLGSVNALLGMVNSG----------H--------MT  407 (546)
Q Consensus       356 Lv~lL~~~---~~~~~~~A~~aL~~Ls~~-------~~n~~~iv~~Gav~~Lv~lL~~~----------~--------~~  407 (546)
                      .+++=+-+   ..+- ...+..++.++..       ..-|..+++.|++...+++|...          +        ..
T Consensus       274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            11211111   1111 2224455555431       23488999999999999988641          1        23


Q ss_pred             HHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC
Q 009036          408 GRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG  443 (546)
Q Consensus       408 e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~  443 (546)
                      ..++.+|.-||.....-+.++..++| .++..|...
T Consensus       353 p~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqv  387 (802)
T PF13764_consen  353 PYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQV  387 (802)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcC
Confidence            45888888888877666666666666 666666654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.37  E-value=0.15  Score=42.56  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=51.4

Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      ..+++++..+.+.+..+|.+|+.+|.+++........-.-...+..|.+++.+.++.+ +.++..|-+|
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~l   94 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRL   94 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHH
Confidence            4789999999999999999999999999865433222222567888888888888887 4555666655

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=94.36  E-value=0.14  Score=49.45  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhhCCcccHHHHHhCC-------cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhh-HHHHHHCCc
Q 009036          406 MTGRVLLILGNLASCSDGRVAVLDSG-------GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRF-KGLAAAAGM  477 (546)
Q Consensus       406 ~~e~al~~L~nLa~~~e~r~~i~~~g-------~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~-~~~~~~~g~  477 (546)
                      .+..|+.+|+.||..+.|.+.++.++       .+..|+++|...  .+...+|.|+.+|.+||.++... +.++.+.+.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~--e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR--EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            68889999999999888888888765       334444445443  56889999999999999976654 467889999


Q ss_pred             HHHHHHHHhcCCHHHHH
Q 009036          478 AEVLMRMERVGSEHVKE  494 (546)
Q Consensus       478 v~~L~~ll~~~s~~~k~  494 (546)
                      +..|+.++......+..
T Consensus       218 i~~Li~FiE~a~~~~~~  234 (257)
T PF12031_consen  218 ISHLIAFIEDAEQNAHQ  234 (257)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999877555443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.36  E-value=0.037  Score=55.73  Aligned_cols=47  Identities=13%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             CCceeCcccccccCCC-------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADP-------------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        43 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      -.|-.|-||++-|-.|             =-++|||.+--.|+..|.+. ..+||.|+.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            3677899999885444             57999999999999999984 45899999874

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.93  Score=51.89  Aligned_cols=263  Identities=16%  Similarity=0.170  Sum_probs=159.3

Q ss_pred             HHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-----
Q 009036          248 LISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-----  322 (546)
Q Consensus       248 l~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-----  322 (546)
                      -..|..+.+.+.+|...+.++.++..++.++-+  .+-+...+.++..|...+..+   +....+-.++..|++|     
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence            356777888899999999998888887777733  333444455555544432211   1122355677777764     


Q ss_pred             ---CH----HHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhcc----------CCHHHHHHHHHHHHH-----hh
Q 009036          323 ---SA----EAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKS----------DSERTQHDSALALYH-----LS  379 (546)
Q Consensus       323 ---~~----~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~----------~~~~~~~~A~~aL~~-----Ls  379 (546)
                         ..    .+....+.+|+.....+ ..+..+++.+++..|...|..          ++.-+-..-...|+.     +|
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence               11    23334456666655443 345666778888887766642          122222222333332     24


Q ss_pred             cCchhHHHHHhcCcHHHHHHHHhCc--------------------------hHH--HHHHHHHHHhhC------Cc----
Q 009036          380 LVKSNRTKLVKLGSVNALLGMVNSG--------------------------HMT--GRVLLILGNLAS------CS----  421 (546)
Q Consensus       380 ~~~~n~~~iv~~Gav~~Lv~lL~~~--------------------------~~~--e~al~~L~nLa~------~~----  421 (546)
                      .+..|+.++...=....+..+|...                          .+.  ..|+..+..+-.      .+    
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence            4566666554433333333333221                          111  112223333222      11    


Q ss_pred             -ccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHH---hcCCHHHHHHHH
Q 009036          422 -DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRME---RVGSEHVKEKAK  497 (546)
Q Consensus       422 -e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll---~~~s~~~k~~A~  497 (546)
                       ..++.|...|++..|++.+...   .++.+-.-+..|-.+++.++.........|+++.|++++   .+|+...-..|.
T Consensus       898 npdk~~iynagavRvlirslLln---ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshal  974 (2799)
T KOG1788|consen  898 NPDKQKIYNAGAVRVLIRSLLLN---YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL  974 (2799)
T ss_pred             CchHhhhcccchhHHHHHHHHhh---ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence             1267788899999999987763   478888888888888888877888889999999999874   477778888899


Q ss_pred             HHHHHhhcCCcccc-ccCChHH
Q 009036          498 RMLELMKGRAEEEE-EGVDWDE  518 (546)
Q Consensus       498 ~lL~~L~~~~~~~~-~~~~~~~  518 (546)
                      .++..|+-..-... ...-|.-
T Consensus       975 kIvemLgayrlspselsMlwry  996 (2799)
T KOG1788|consen  975 KIVEMLGAYRLSPSELSMLWRY  996 (2799)
T ss_pred             HHHHHHhhccCCcHHHHHHHHH
Confidence            99999987776653 4445643

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.24  E-value=1.2  Score=47.74  Aligned_cols=149  Identities=21%  Similarity=0.166  Sum_probs=106.4

Q ss_pred             hHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCH----HHHHHHHHHHHHhhcCchhHHH
Q 009036          312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE----RTQHDSALALYHLSLVKSNRTK  387 (546)
Q Consensus       312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~----~~~~~A~~aL~~Ls~~~~n~~~  387 (546)
                      ...+.+++.+++...+..|..-|.+|+.+......+....++..|..++.++..    +.....+.++..|-...-.--.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            456778899999999988999999999998888888888899999999998643    4555555665555332211112


Q ss_pred             HHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          388 LVKLGSVNALLGMVNS----GHMTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                      .+....|...+.+...    .++-..|+.+|.++..+.. -+..+.+.--+..|+..|..   .+...+..|++.|-.+.
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~---~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV---SNQRIQTCAIALLNALF  241 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence            2222334444444422    2377889999999998776 45555677789999999988   45777778888887775


Q ss_pred             c
Q 009036          463 H  463 (546)
Q Consensus       463 ~  463 (546)
                      .
T Consensus       242 ~  242 (713)
T KOG2999|consen  242 R  242 (713)
T ss_pred             h
Confidence            5

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.026  Score=60.61  Aligned_cols=65  Identities=23%  Similarity=0.276  Sum_probs=45.3

Q ss_pred             CCCceeCccccccc----CCCeecCCCccccHHHHHHHHhcCCCCCCCCCCC--CCCCCCcccHHHHHHHHH
Q 009036           42 PPGEFLCPVSGSLM----ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTT--PDFSTVIPNLALKSTILN  107 (546)
Q Consensus        42 ~p~~~~CpI~~~~m----~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~--~~~~~l~pn~~l~~~i~~  107 (546)
                      .-+-++|+||...|    ..||.+-||||.|+.|.+.-.+ ..|||+...-.  ....+..-|++|-+.+..
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-~scp~~~De~~~~~~~~e~p~n~alL~~~~d   78 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-ASCPTKRDEDSSLMQLKEEPRNYALLRREHD   78 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-ccCCCCccccchhcChhhcchhHHHHHhhcc
Confidence            34567899997776    5899999999999999988544 45566543221  234456677877666543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.22  E-value=6  Score=43.92  Aligned_cols=222  Identities=13%  Similarity=0.114  Sum_probs=123.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036          271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV  349 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  349 (546)
                      +..|-.+|.+....++--|+..+..|+........+...  .+.++..|+ ..+..+|..|+.+|..++...+.|..+  
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV--  406 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV--  406 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH--
Confidence            555555666666666666666666666654444444333  777888888 558999999999999998765555433  


Q ss_pred             cCChHHHHHhhccCCHHHHHHHHHHHHHhhc-C-------c-------hhHHHHHhcCcHHHHHHHHhC-chHHHHHHHH
Q 009036          350 LGALPPLLHLLKSDSERTQHDSALALYHLSL-V-------K-------SNRTKLVKLGSVNALLGMVNS-GHMTGRVLLI  413 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~-------~-------~n~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~  413 (546)
                          ..|++.|...+...+++.+.=..-|+. +       -       ......++.+++..++++..+ ++++..|+..
T Consensus       407 ----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~  482 (938)
T KOG1077|consen  407 ----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKR  482 (938)
T ss_pred             ----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHH
Confidence                345666665555554443322222211 0       0       012244566777888887765 4578877777


Q ss_pred             HHHhhCCcccHHHHHhCC--cHHHHHHHHccCCC----------------CCHHHHHHHHHHHHHHhcCChhhHHHHHHC
Q 009036          414 LGNLASCSDGRVAVLDSG--GVECLVGMLRKGTE----------------LSESTQESCVSVLYALSHGGLRFKGLAAAA  475 (546)
Q Consensus       414 L~nLa~~~e~r~~i~~~g--~i~~Lv~lL~~~~~----------------~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~  475 (546)
                      +...-..+...+.++..|  .+...-.++.....                .++..+-.-+.++..++...++.+.-+   
T Consensus       483 ~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v---  559 (938)
T KOG1077|consen  483 LFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNV---  559 (938)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHH---
Confidence            666555555666666543  12222333322110                233344444444455554333333321   


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          476 GMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       476 g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                        ...+..-...-+.+++..|.+-|....-
T Consensus       560 --~~vFq~~~n~~D~ElQqRa~EYLql~k~  587 (938)
T KOG1077|consen  560 --QKVFQLYSNLIDVELQQRAVEYLQLSKL  587 (938)
T ss_pred             --HHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence              2233333334578888888887776543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.13  E-value=2.6  Score=41.50  Aligned_cols=190  Identities=16%  Similarity=0.130  Sum_probs=120.2

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHH-------ccCC--H---HHHHHHHHHHHHhhcCCchHHHH
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLI-------ISRY--T---NVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL-------~s~~--~---~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      +++.++.|+..|..--...+..-..+. ..|.+..|+.=+       ..+.  .   .-.-+|+..|--++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            567788887777654443333333344 478777776522       2221  2   12234566667788899999999


Q ss_pred             HhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036          307 VRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                      .++...--|.-+|+..     -..+|....+++..|...++.  -..+...+.+|..++.+..++.-.|..|...+..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9988765666666543     245788899999999875533  334456789999999999998888888887777765


Q ss_pred             cCchh-------HHHHHhc-CcHHHHHHHH-hCc--hHHHHHHHHHHHhhCCcccHHHHHh
Q 009036          380 LVKSN-------RTKLVKL-GSVNALLGMV-NSG--HMTGRVLLILGNLASCSDGRVAVLD  429 (546)
Q Consensus       380 ~~~~n-------~~~iv~~-Gav~~Lv~lL-~~~--~~~e~al~~L~nLa~~~e~r~~i~~  429 (546)
                      .++..       .+++... .++..++.-+ .++  .+-+..+.+-..|+.++.+|.++.+
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            54432       1222211 1333334333 233  3778899999999999999888774

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.12  E-value=1.9  Score=49.13  Aligned_cols=224  Identities=14%  Similarity=0.099  Sum_probs=122.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHH-HH---HHHHhhcCCch
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA-VA---ALVNLSLEKIN  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A-~~---~L~nLs~~~~n  302 (546)
                      ..+..+++.|...+.++|-.|++.|.-++..-.+.+-.    -.++.|..-+-++....+.-+ +.   .+.|+.-   .
T Consensus        47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P---~  119 (1233)
T KOG1824|consen   47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP---S  119 (1233)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC---c
Confidence            56788999999999999999999999888543332211    123333333223333333222 22   2334432   1


Q ss_pred             HHHHHhcCChHHHHHHHccC------CHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHH
Q 009036          303 KMLIVRSGLVPPIVDVLMAG------SAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALAL  375 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL  375 (546)
                      ........+++.+...|...      ...++-.++.+|..+-.. ...-.- ...+.+..++.-|.+....+++.|+.+|
T Consensus       120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l  198 (1233)
T KOG1824|consen  120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL  198 (1233)
T ss_pred             cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence            11111223444444444322      334666666666543221 111000 2345566666667777778999999999


Q ss_pred             HHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHH
Q 009036          376 YHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSEST  450 (546)
Q Consensus       376 ~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~  450 (546)
                      .+|+..-.   ...-.+++..|++=|....   ...--+.+|..+|.....  .+..  ...++.+.++....+..+++.
T Consensus       199 ~~la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~--r~~~h~~~ivp~v~~y~~~~e~~dDEL  273 (1233)
T KOG1824|consen  199 GHLASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH--RFGSHLDKIVPLVADYCNKIEEDDDEL  273 (1233)
T ss_pred             HHHHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc--hhhcccchhhHHHHHHhcccccCcHHH
Confidence            99987432   1122345666666665432   222233444444433222  2332  347788888884433357899


Q ss_pred             HHHHHHHHHHHhc
Q 009036          451 QESCVSVLYALSH  463 (546)
Q Consensus       451 ~e~Av~~L~~L~~  463 (546)
                      +|.++.+|-.+..
T Consensus       274 rE~~lQale~fl~  286 (1233)
T KOG1824|consen  274 REYCLQALESFLR  286 (1233)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.94  E-value=3  Score=38.83  Aligned_cols=93  Identities=22%  Similarity=0.188  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHH
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL  319 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL  319 (546)
                      ++.+|..++..+..|+...+.    +++ ..++.+...|.++++.++..|+.+|..|...+--|.+   ...+..++..|
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            356777888888888875432    221 3478888999999999999999999998876443321   22447788888


Q ss_pred             ccCCHHHHHHHHHHHhhcccc
Q 009036          320 MAGSAEAQEHACGAIFSLALD  340 (546)
Q Consensus       320 ~~~~~~~~~~Aa~~L~~Ls~~  340 (546)
                      .+.+++++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999988665

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.86  E-value=3.2  Score=43.44  Aligned_cols=240  Identities=16%  Similarity=0.168  Sum_probs=132.4

Q ss_pred             chhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHH-HHHHHHHHHhhcCCch
Q 009036          226 NEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQ-VNAVAALVNLSLEKIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~-~~A~~~L~nLs~~~~n  302 (546)
                      ...++.++..|. +.+...|+.++-.|..-+. ++..|..+...|.+..+.+.+.. ++..+- -.++.++.-++.+..+
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~   98 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN   98 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence            356788888886 3355678888888777666 46899999999999999999843 333233 3344445556666555


Q ss_pred             HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhc---------cCCHHHHHH
Q 009036          303 KMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLK---------SDSERTQHD  370 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~---------~~~~~~~~~  370 (546)
                      ...+.....+..++.+|... .........         ...+..+..  ...+..+...+.         .....-+..
T Consensus        99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l  169 (361)
T PF07814_consen   99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTL  169 (361)
T ss_pred             hhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccH
Confidence            55555556667767777611 000000000         000000000  001111111110         011223334


Q ss_pred             HHHHHHHhh--------------cC-chhHHHHHhcCcHHHHHHHHhC----c------------h--HHHHHHHHHHHh
Q 009036          371 SALALYHLS--------------LV-KSNRTKLVKLGSVNALLGMVNS----G------------H--MTGRVLLILGNL  417 (546)
Q Consensus       371 A~~aL~~Ls--------------~~-~~n~~~iv~~Gav~~Lv~lL~~----~------------~--~~e~al~~L~nL  417 (546)
                      |+.+|-.++              .. +.-++++...|++..+++++.+    .            +  ..+.++.+|.+.
T Consensus       170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~  249 (361)
T PF07814_consen  170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV  249 (361)
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence            444554443              01 1236777788999999999862    1            0  456799999998


Q ss_pred             hC-CcccHHHHHh--CCcHHHHHH-HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC
Q 009036          418 AS-CSDGRVAVLD--SGGVECLVG-MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA  475 (546)
Q Consensus       418 a~-~~e~r~~i~~--~g~i~~Lv~-lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~  475 (546)
                      +. ..++...+..  .+.+..+.. ++.............++.+|.|++.+++..+..+...
T Consensus       250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~  311 (361)
T PF07814_consen  250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP  311 (361)
T ss_pred             HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence            74 4556666664  233333333 3333110123345788999999999875555544433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.83  E-value=2.3  Score=43.93  Aligned_cols=194  Identities=12%  Similarity=0.085  Sum_probs=137.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH-----Hhh-c-CChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV-----SLC-T-PRLLLALRSLIISRYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~l~-~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~  298 (546)
                      .+.+..|+..|..-+.+.+..+......+.+.....+.     .+. . ..++..|+.--..  +++--.+-..|.....
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~--~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN--PDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS--TTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC--ccccchHHHHHHHHHh
Confidence            45667888889889999999999988888877554432     333 2 4556666665553  4444556677788777


Q ss_pred             CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-ch-hhHHhh--cCChHHHHHhhccCCHHHHHHHHHH
Q 009036          299 EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QN-KTAIGV--LGALPPLLHLLKSDSERTQHDSALA  374 (546)
Q Consensus       299 ~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~-k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~a  374 (546)
                      ++.-...|.....+..+......++-++...|..++..|-..+ .. .+.+..  ...+.....+|.+++--+++.++..
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            7776777777778888999999999999999999998865443 22 222322  3456677788999999999999999


Q ss_pred             HHHhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036          375 LYHLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS  421 (546)
Q Consensus       375 L~~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~  421 (546)
                      |..|-..+.|-.-|...    .-+..++.+|.+.+  ++-.|.-++.-...+|
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            99999988886655433    56777888888754  8888888887665544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.79  E-value=1.7  Score=42.81  Aligned_cols=148  Identities=19%  Similarity=0.147  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHHHHhhc-CchhHHHHHhc-CcHHHHHHHHhC-------ch-------HHHHHHHHHHHhhCCcccHHHH
Q 009036          364 SERTQHDSALALYHLSL-VKSNRTKLVKL-GSVNALLGMVNS-------GH-------MTGRVLLILGNLASCSDGRVAV  427 (546)
Q Consensus       364 ~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~-Gav~~Lv~lL~~-------~~-------~~e~al~~L~nLa~~~e~r~~i  427 (546)
                      +++.++.|+.-|..--. .++-...+-.. |.+..|++=+-+       +.       -...|+++|-.+|++++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            45566655554443322 22233334344 888887754432       11       3346889999999999999999


Q ss_pred             HhCCcHHHHHHHHccCCCC--CHHHHHHHHHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          428 LDSGGVECLVGMLRKGTEL--SESTQESCVSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       428 ~~~g~i~~Lv~lL~~~~~~--s~~~~e~Av~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      +++...-.|...|......  -+-.+-..++++..|.+ ++.+......+..+++..++.++.|++-.|..|..++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999777777777664211  13466778888888887 45567777888899999999999999999999999998887


Q ss_pred             cCCcccc
Q 009036          505 GRAEEEE  511 (546)
Q Consensus       505 ~~~~~~~  511 (546)
                      .++.+-+
T Consensus       168 ~dd~GL~  174 (262)
T PF04078_consen  168 LDDVGLN  174 (262)
T ss_dssp             HSHHHHH
T ss_pred             cchhHHH
Confidence            6554433

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.75  E-value=0.013  Score=65.42  Aligned_cols=46  Identities=13%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             eeCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDF   92 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~   92 (546)
                      +.|+||.+ -.+||++.|||.||++|+.+.++. ...|||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            89999999 899999999999999999886653 44599999765543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.62  E-value=0.32  Score=38.22  Aligned_cols=64  Identities=16%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCC
Q 009036          368 QHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSG  431 (546)
Q Consensus       368 ~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g  431 (546)
                      .+.|++++.++++.+....-+-+.++|+.++++....+   ++--|..+|..++...+|.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            47899999999998777777777799999999998654   78889999999999999999887766

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.62  E-value=0.67  Score=45.68  Aligned_cols=94  Identities=16%  Similarity=0.120  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHcc
Q 009036          244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMA  321 (546)
Q Consensus       244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~  321 (546)
                      ...|+..|.-++--++..|..+.+...+..|+.+|. ...+.++..++.+|..+.. ++.|...+.+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            455778888888888899999999999999999995 4678999999988876555 58999999999999999999997


Q ss_pred             C--CHHHHHHHHHHHhhc
Q 009036          322 G--SAEAQEHACGAIFSL  337 (546)
Q Consensus       322 ~--~~~~~~~Aa~~L~~L  337 (546)
                      .  +.+++......|.-.
T Consensus       188 ~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             ccccHHHhHHHHHHHHHH
Confidence            6  678888888877543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.57  E-value=2.3  Score=49.70  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=140.6

Q ss_pred             CHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc---C--CchHHHHHhcCChH
Q 009036          240 QVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL---E--KINKMLIVRSGLVP  313 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~--~~nk~~i~~~g~l~  313 (546)
                      ..+.+.+|+..|+.++..- ++.+-    ..++|.++.++..+...+|..|+.+|..+..   +  +.+...+.+. .+|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP  510 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFP  510 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhh
Confidence            3456889999999998753 23332    3579999999999999999999888765432   2  2333333333 778


Q ss_pred             HHHHHHccC-CHHHHHHHHHHHhhcccc------------------c-chhhHHhh--c-------CChH-HHHHhhccC
Q 009036          314 PIVDVLMAG-SAEAQEHACGAIFSLALD------------------D-QNKTAIGV--L-------GALP-PLLHLLKSD  363 (546)
Q Consensus       314 ~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~------------------~-~~k~~i~~--~-------g~l~-~Lv~lL~~~  363 (546)
                      .|-.++.+. ...+|..-|..|..|+..                  + ++......  .       ..++ ..+.+|.+.
T Consensus       511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~  590 (1431)
T KOG1240|consen  511 HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS  590 (1431)
T ss_pred             hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence            888888773 333333333333322211                  1 11000000  0       1122 222334444


Q ss_pred             CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhh---CCcccHHHHHhCCcHHHHHHHH
Q 009036          364 SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLA---SCSDGRVAVLDSGGVECLVGML  440 (546)
Q Consensus       364 ~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa---~~~e~r~~i~~~g~i~~Lv~lL  440 (546)
                      .+-+++.-+..|.-||..-. |.+ -..=.++.|+.+|.+++..-++ +.+..+.   ..-.-|  -++...+|.|.+-|
T Consensus       591 ~~~Vkr~Lle~i~~LC~FFG-k~k-sND~iLshLiTfLNDkDw~LR~-aFfdsI~gvsi~VG~r--s~seyllPLl~Q~l  665 (1431)
T KOG1240|consen  591 PPIVKRALLESIIPLCVFFG-KEK-SNDVILSHLITFLNDKDWRLRG-AFFDSIVGVSIFVGWR--SVSEYLLPLLQQGL  665 (1431)
T ss_pred             chHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHhcCccHHHHH-HHHhhccceEEEEeee--eHHHHHHHHHHHhc
Confidence            44566666667777765210 000 0112456677777776522221 2223333   211111  12334556666666


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          441 RKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       441 ~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .++   .+-+...|++.|..||..+--.+..+.+  .++...-++-+.|.=+|+.+..++-...+.-
T Consensus       666 tD~---EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  666 TDG---EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             cCc---chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence            663   3678889999999998854323333333  4556666788889999999998887776543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=1.5  Score=48.93  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=99.5

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      ++.+-+++.....|.+.+.-.-.-|.|-+.......    .+++..++.=..+.++.+|.-|.+.+..+-...-.     
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~-----  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT-----  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH-----
Confidence            456777777777887777665555666555322111    23455555555667899998888888777432111     


Q ss_pred             hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036          349 VLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS  421 (546)
Q Consensus       349 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~  421 (546)
                       .-...+|...++++++.+++.|+....++  +..+.......|.++.|-.++.+.+  +...|+.+|..+....
T Consensus       120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             -HHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence             12567888999999999999988877776  4455666677799999999998654  8899999999988644

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.40  E-value=6.8  Score=41.63  Aligned_cols=207  Identities=18%  Similarity=0.179  Sum_probs=128.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHhhccccc----chhhHHhhcCChHHHHHhhccC-------CHHHHHHHHHHHHHhhcCch
Q 009036          315 IVDVLMAGSAEAQEHACGAIFSLALDD----QNKTAIGVLGALPPLLHLLKSD-------SERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~----~~k~~i~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      +..++...+.+-|..|.-....+...+    .+|..+.+.=+++.+-++|..+       +.-.+..++..|...|+.++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            444455556666666655556666554    3577777776778888888753       33456667788888999876


Q ss_pred             h--HHHHHhcCcHHHHHHHHhCc---h------HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036          384 N--RTKLVKLGSVNALLGMVNSG---H------MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       384 n--~~~iv~~Gav~~Lv~lL~~~---~------~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      .  .+.|++  .||.|.+++..+   +      +.+.+-.+|..++..+.|...++..|+++.+.++-.-.. .+. -.+
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~-~~~-d~a  171 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD-GSH-DMA  171 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC-Cch-hHH
Confidence            4  566666  599999999742   2      678889999999999999999999999999998765421 112 234


Q ss_pred             HHHHHHHHHhcC----ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcc-----ccccCChHHHHhcC
Q 009036          453 SCVSVLYALSHG----GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE-----EEEGVDWDELLDSG  523 (546)
Q Consensus       453 ~Av~~L~~L~~~----~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~-----~~~~~~~~~~~~~~  523 (546)
                      .|+.+|.-+...    ++.......   ++..+.+=++......|-.+..+|..+-.....     ...+..|-+-+..|
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence            555555444331    111111110   123333333344555566666666633322221     12566888888777


Q ss_pred             Ccccc
Q 009036          524 LVSRS  528 (546)
Q Consensus       524 ~~~~~  528 (546)
                      .+.-+
T Consensus       249 ~~~IL  253 (698)
T KOG2611|consen  249 VVAIL  253 (698)
T ss_pred             HHHHH
Confidence            76544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=93.39  E-value=8.9  Score=41.68  Aligned_cols=268  Identities=11%  Similarity=0.045  Sum_probs=153.9

Q ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCC--hHHHHHHHHcc-CCHHHHHHHHHHHHHhhc-CCchH
Q 009036          229 EDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPR--LLLALRSLIIS-RYTNVQVNAVAALVNLSL-EKINK  303 (546)
Q Consensus       229 i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g--~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~-~~~nk  303 (546)
                      .+.+++..-.. ....+++++..+...+....- ...+...+  ++......++. .+..++-.|+.+|.+-.. -..|-
T Consensus       135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf  213 (858)
T COG5215         135 MEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNF  213 (858)
T ss_pred             HHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444333 345677888888877654221 22222222  23333334443 577888888888876221 11111


Q ss_pred             HHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          304 MLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       304 ~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      ..-.+ .=++...++.-+..+.+++..|...|..+.... ..-..+.+.-......+.+++.+.++...|+..-..+|..
T Consensus       214 ~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE  293 (858)
T COG5215         214 CYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE  293 (858)
T ss_pred             cchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            10011 114566677777889999999999988765432 3323444444445556778888999888888655455531


Q ss_pred             c---------------hhHH--HHHhcCcHHHHHHHHhCc------h---HHHH---HHHHHHHhhCCcccHHHHHhCCc
Q 009036          382 K---------------SNRT--KLVKLGSVNALLGMVNSG------H---MTGR---VLLILGNLASCSDGRVAVLDSGG  432 (546)
Q Consensus       382 ~---------------~n~~--~iv~~Gav~~Lv~lL~~~------~---~~e~---al~~L~nLa~~~e~r~~i~~~g~  432 (546)
                      .               .|..  ...-..++|.|+.+|...      +   +...   |+.....++..     .     .
T Consensus       294 eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-----~-----i  363 (858)
T COG5215         294 EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-----K-----I  363 (858)
T ss_pred             HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----H-----h
Confidence            1               0111  111225789999999751      1   3333   44444444331     2     2


Q ss_pred             HHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          433 VECLVGMLRKG-TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       433 i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +.+++..+... ...+-.-+|.|+-++..+-.+....+..-.-+.+++.+..++.+..--+|+.+++++-.++.+-
T Consensus       364 ~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v  439 (858)
T COG5215         364 MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV  439 (858)
T ss_pred             HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence            33344443331 1134567899999999988765444333233447888888888888889999999998887643

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.31  E-value=7.5  Score=40.13  Aligned_cols=200  Identities=12%  Similarity=0.082  Sum_probs=135.9

Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhh--HH-hhcCC-hHHHHHhhcc-CCHHHHHHHHHHHHHhh
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKT--AI-GVLGA-LPPLLHLLKS-DSERTQHDSALALYHLS  379 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~--~i-~~~g~-l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls  379 (546)
                      +...+.+..|+..|..-+.+.|..++.+..++.... +.+.  .+ .-..- -+.|..++.. ++++.--.+...|...+
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~  151 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI  151 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            345688999999999999999999999998886653 2221  11 11122 2222223322 35666667777888888


Q ss_pred             cCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHh-hCCcccHHHHHhCC---cHHHHHHHHccCCCCCHHHHHH
Q 009036          380 LVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNL-ASCSDGRVAVLDSG---GVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       380 ~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nL-a~~~e~r~~i~~~g---~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      .++.....+.....+..+.+.+..+.  +...|..++..| ..+..-...++...   .....-++|.+   .+-.++.+
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s---~NYvtkrq  228 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES---SNYVTKRQ  228 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT----SSHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC---CCeEeehh
Confidence            88877888888888888999888765  788888888875 45666666666543   55666777777   46889999


Q ss_pred             HHHHHHHHhcCChhhH---HHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          454 CVSVLYALSHGGLRFK---GLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       454 Av~~L~~L~~~~~~~~---~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ++..|..|-.+.....   ..+.+..-+..++.++++.+..++-.|-.+++.+...+.
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence            9999999987543322   334444567888889999999999888888888766543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=93.24  E-value=1.9  Score=46.62  Aligned_cols=166  Identities=17%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcc-cccch-hhHHhh--cC--
Q 009036          280 SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLA-LDDQN-KTAIGV--LG--  351 (546)
Q Consensus       280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls-~~~~~-k~~i~~--~g--  351 (546)
                      ++|+.++..|-.-|.+++..+-.+       ++..++++|-+.  .+++|..|.-+|.|-. ..++. +.....  .|  
T Consensus        16 spD~n~rl~aE~ql~~l~~~dF~q-------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~   88 (858)
T COG5215          16 SPDPNARLRAEAQLLELQSGDFEQ-------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR   88 (858)
T ss_pred             CCCCCccccHHHHHHHhccccHHH-------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence            567777777777788776543322       456677777543  6888988888887743 33322 222211  11  


Q ss_pred             -----ChH-HHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHh----Cc---hHHHHHHHHHHHhh
Q 009036          352 -----ALP-PLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN----SG---HMTGRVLLILGNLA  418 (546)
Q Consensus       352 -----~l~-~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~----~~---~~~e~al~~L~nLa  418 (546)
                           -++ ..++.|++..++....|+.+|..++..+      +-.|..|-|++.+.    ++   ..+..++.++.+.|
T Consensus        89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c  162 (858)
T COG5215          89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC  162 (858)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence                 111 1234455556666677777777665532      22255555555543    22   27888999999999


Q ss_pred             CCcccHHHHHhCC-cHHHHHH-HHccCCCCCHHHHHHHHHHHHH
Q 009036          419 SCSDGRVAVLDSG-GVECLVG-MLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       419 ~~~e~r~~i~~~g-~i~~Lv~-lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      ....-...+...+ ++-.++. .++.+  .+..++-.|+.+|..
T Consensus       163 es~~Pe~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~d  204 (858)
T COG5215         163 ESEAPEDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMD  204 (858)
T ss_pred             hccCHHHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHH
Confidence            8765533333344 4444444 45554  457788889998887

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.21  E-value=4.5  Score=41.03  Aligned_cols=167  Identities=17%  Similarity=0.106  Sum_probs=106.6

Q ss_pred             HHHHH-HhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHH
Q 009036          229 EDYFV-QKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKML  305 (546)
Q Consensus       229 i~~lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~  305 (546)
                      ++.+| ..+++.+..+|+.|++.|...+--+.+.    . ...++.+...+..++..++..|+.+|..+...  ......
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            44444 5678999999999999999877644321    1 12367777777778999999999999877642  111111


Q ss_pred             -------HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc----CCHHHHHHHHHH
Q 009036          306 -------IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS----DSERTQHDSALA  374 (546)
Q Consensus       306 -------i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~----~~~~~~~~A~~a  374 (546)
                             ......+..+...|.+.+++++..|+..+..|........   ....+..|+-+.-+    ++++.+..-...
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence                   1123567788888888899999999999988765543211   12344444433322    355665444445


Q ss_pred             HHHhhcCchhHHHHHhcCcHHHHHHHHhC
Q 009036          375 LYHLSLVKSNRTKLVKLGSVNALLGMVNS  403 (546)
Q Consensus       375 L~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~  403 (546)
                      +-..+......+..+....++.+..+...
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            65666655544555555577776666654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.98  E-value=5.9  Score=42.10  Aligned_cols=143  Identities=13%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             HHHccCCHHHHHHHHHHHHHhhcC----CchHHHHHhcCChHHHHHHHccC-------CHHHHHHHHHHHhhcccccchh
Q 009036          276 SLIISRYTNVQVNAVAALVNLSLE----KINKMLIVRSGLVPPIVDVLMAG-------SAEAQEHACGAIFSLALDDQNK  344 (546)
Q Consensus       276 ~lL~s~~~~v~~~A~~~L~nLs~~----~~nk~~i~~~g~l~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~~k  344 (546)
                      .++...+.+-+-.|+-....+.++    ..||+.+.++=+.+.+=++|.++       +.-.+..+..+|.-++.+++..
T Consensus        18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA   97 (698)
T KOG2611|consen   18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA   97 (698)
T ss_pred             HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence            344444444455555555666664    25788888888888888888754       2345677788888888887643


Q ss_pred             hHHhhcCChHHHHHhhccC-CH------HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHH
Q 009036          345 TAIGVLGALPPLLHLLKSD-SE------RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLIL  414 (546)
Q Consensus       345 ~~i~~~g~l~~Lv~lL~~~-~~------~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L  414 (546)
                      ..-.....||.|..++..+ ++      -...++-.+|+.++..+.....++..|+++.+.++-..++   -.+.++.++
T Consensus        98 sh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vl  177 (698)
T KOG2611|consen   98 SHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVL  177 (698)
T ss_pred             cCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHH
Confidence            2222235789999998652 22      3667888899999999999999999999999998765433   344455555


Q ss_pred             HHhh
Q 009036          415 GNLA  418 (546)
Q Consensus       415 ~nLa  418 (546)
                      ..+.
T Consensus       178 ll~~  181 (698)
T KOG2611|consen  178 LLLV  181 (698)
T ss_pred             HHHH
Confidence            5444

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.88  E-value=0.82  Score=45.53  Aligned_cols=160  Identities=18%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC--ChHHHHHHHcc----CCHHHHHHHHHHHhhcccccchh
Q 009036          271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG--LVPPIVDVLMA----GSAEAQEHACGAIFSLALDDQNK  344 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g--~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k  344 (546)
                      +..+...+.....+-+--++..++-+..++..-..+...+  ....+..++..    ..+..+..+++++.|+-.....+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            4555556666655556667777877777776666665443  34555555543    36788899999999998888777


Q ss_pred             hHHhh-cC-ChHHHHHhhccC----CHHHHHHHHHHHHHhhcCc-hhH-HHHHhcCcHHHHHHHHh----CchHHHHHHH
Q 009036          345 TAIGV-LG-ALPPLLHLLKSD----SERTQHDSALALYHLSLVK-SNR-TKLVKLGSVNALLGMVN----SGHMTGRVLL  412 (546)
Q Consensus       345 ~~i~~-~g-~l~~Lv~lL~~~----~~~~~~~A~~aL~~Ls~~~-~n~-~~iv~~Gav~~Lv~lL~----~~~~~e~al~  412 (546)
                      ..+.. .+ .+...+..+...    +..++..++.+++|++..- .++ ..-.....+..+++.+.    +.+...+++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            77765 33 444444444443    6778888899999997632 111 11111123445555332    3458889999


Q ss_pred             HHHHhhCCcccHHHHHhC
Q 009036          413 ILGNLASCSDGRVAVLDS  430 (546)
Q Consensus       413 ~L~nLa~~~e~r~~i~~~  430 (546)
                      +|.+|...+.........
T Consensus       225 AlGtL~~~~~~~~~~~~~  242 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAKS  242 (268)
T ss_dssp             HHHHHHCCSHHHHHHCCC
T ss_pred             HHHHHhccChhHHHHHHH
Confidence            999999777666666653

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=92.85  E-value=6.5  Score=38.68  Aligned_cols=193  Identities=20%  Similarity=0.191  Sum_probs=115.4

Q ss_pred             chhHHHHHHhcC--CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC---
Q 009036          226 NEQEDYFVQKLK--SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK---  300 (546)
Q Consensus       226 ~~~i~~lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~---  300 (546)
                      ..+++.++..|.  +..+.+|.+|...|..+..           ...++.|-+..+.+...+.+.+..+|..+--..   
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            467788888884  4567788899999887663           255677777776666666665555554432100   


Q ss_pred             --chHHHH--------HhcCChHHHHHHHccC-CHHHHH-HHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHH
Q 009036          301 --INKMLI--------VRSGLVPPIVDVLMAG-SAEAQE-HACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQ  368 (546)
Q Consensus       301 --~nk~~i--------~~~g~l~~Lv~lL~~~-~~~~~~-~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~  368 (546)
                        .+....        ...+-+..|-..|... .+.... .|.-.|.++          +...+|..|++-|..++.-.+
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFR  204 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHH
Confidence              000000        0112233343333332 232222 222233332          223466677777777777788


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC
Q 009036          369 HDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT  444 (546)
Q Consensus       369 ~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~  444 (546)
                      ..++.++..|-+          .-+|+.|.+.|.+..    ++-.|+.+|..++.          ..++..|.+.+..  
T Consensus       205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D--  262 (289)
T KOG0567|consen  205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGD--  262 (289)
T ss_pred             HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCC--
Confidence            888888877633          247888888887633    77788888877664          3467777777777  


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 009036          445 ELSESTQESCVSVLYALS  462 (546)
Q Consensus       445 ~~s~~~~e~Av~~L~~L~  462 (546)
                       .++.+++.|..+|-.+-
T Consensus       263 -~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  263 -EERVVRESCEVALDMLE  279 (289)
T ss_pred             -cHHHHHHHHHHHHHHHH
Confidence             45677788777775543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.79  E-value=0.62  Score=43.47  Aligned_cols=93  Identities=20%  Similarity=0.167  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc
Q 009036          282 YTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK  361 (546)
Q Consensus       282 ~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~  361 (546)
                      |+.++.+++.++..|+....+-   + ...++.+...|++.++.+|..|+.+|..|...+-.|.   ....+..++.++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~---v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNL---V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHH---H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHHc
Confidence            5678889999999887643332   2 2368899999999999999999999999976543322   1223477888888


Q ss_pred             cCCHHHHHHHHHHHHHhhcC
Q 009036          362 SDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       362 ~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      +++++++..|..++..+...
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999988764

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.73  E-value=0.095  Score=50.24  Aligned_cols=51  Identities=24%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             CCceeCcccccccCCC----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc
Q 009036           43 PGEFLCPVSGSLMADP----VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI   96 (546)
Q Consensus        43 p~~~~CpI~~~~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~   96 (546)
                      -..|+|||++-.|.+=    ++-+|||.|.-.++.+.   +...|++|+..+..++.+
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence            4679999999999886    34599999999998664   456899999998877644

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.61  E-value=11  Score=39.70  Aligned_cols=98  Identities=17%  Similarity=0.279  Sum_probs=77.6

Q ss_pred             hhc-CChHHHHHHHHccC---CHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHc-cC---CHHHHHHHHHHHh
Q 009036          265 LCT-PRLLLALRSLIISR---YTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLM-AG---SAEAQEHACGAIF  335 (546)
Q Consensus       265 l~~-~g~i~~Lv~lL~s~---~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~-~~---~~~~~~~Aa~~L~  335 (546)
                      +.+ ..++..|...+.+.   .+.+-..|+.++..+.. +|..-..|.+.|.++.+++.+. .+   +.++...--.+|.
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            444 44555666666654   35677778888887766 4778888889999999999888 54   6778777888899


Q ss_pred             hcccccchhhHHhhcCChHHHHHhhcc
Q 009036          336 SLALDDQNKTAIGVLGALPPLLHLLKS  362 (546)
Q Consensus       336 ~Ls~~~~~k~~i~~~g~l~~Lv~lL~~  362 (546)
                      .|+.+....+.+.+.+.++.+++++.+
T Consensus       181 AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  181 AICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            999999999999989999999999876

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.54  E-value=0.97  Score=42.17  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHh
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS---------RYTNVQVNAVAALVNL  296 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s---------~~~~v~~~A~~~L~nL  296 (546)
                      ...+.++..|++.....  +.+..|+...+.++ .--..|++.||+..|+.+|..         .+...+..++.+|..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45677888887665543  55666665555544 345677788999999998862         4567888899999988


Q ss_pred             hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcc
Q 009036          297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLA  338 (546)
Q Consensus       297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls  338 (546)
                      .....+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            887777777765 588999999999999999999999998765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.20  E-value=7.4  Score=43.80  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=88.2

Q ss_pred             HhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch-HHHHHHHHHHHhhCCccc-------------
Q 009036          358 HLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-MTGRVLLILGNLASCSDG-------------  423 (546)
Q Consensus       358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~-~~e~al~~L~nLa~~~e~-------------  423 (546)
                      .+|.+.++.+...++.+.++|+...++.      +.++.|+.+|.+.. ++.-.|..+..++.-..+             
T Consensus       294 pLl~S~n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~s  367 (968)
T KOG1060|consen  294 PLLQSRNPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRS  367 (968)
T ss_pred             HHHhcCCcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeec
Confidence            3455567888888999999997744221      34778888887643 555555555554431110             


Q ss_pred             ---------HHH----HHhCCcHHHHHH----HHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh
Q 009036          424 ---------RVA----VLDSGGVECLVG----MLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER  486 (546)
Q Consensus       424 ---------r~~----i~~~g~i~~Lv~----lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~  486 (546)
                               +-.    ++++.-|..+++    ++.+   .+......|+.+|...+.....     ...-++.-|+.++.
T Consensus       368 sDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s---~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Lls  439 (968)
T KOG1060|consen  368 SDPTQVKILKLEILSNLANESNISEILRELQTYIKS---SDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLS  439 (968)
T ss_pred             CCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHh
Confidence                     111    222232333332    3333   1223444445554443322111     22336788999999


Q ss_pred             cCCHHHHHHHHHHHHHhhcCCccccc--cCChHHHHhcCCccccc
Q 009036          487 VGSEHVKEKAKRMLELMKGRAEEEEE--GVDWDELLDSGLVSRSR  529 (546)
Q Consensus       487 ~~s~~~k~~A~~lL~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~  529 (546)
                      +.+..+-..|...++.|-...+-+..  -....+.++...|.+-|
T Consensus       440 shde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~AR  484 (968)
T KOG1060|consen  440 SHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAAR  484 (968)
T ss_pred             cccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhh
Confidence            99999999999999988876654441  11234455555555544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.18  E-value=1.2  Score=37.26  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ...+++++..+.+   .+.+++..|+.+|.+++... ...-..+  ..++..|.+++.+.++.+|..|..+-+.|.
T Consensus        26 ~~Il~pVL~~~~D---~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   26 DEILPPVLKCFDD---QDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            3467888888877   56899999999999998742 1222222  337789999999999999988866666553

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.12  E-value=7.3  Score=39.77  Aligned_cols=180  Identities=17%  Similarity=0.206  Sum_probs=98.4

Q ss_pred             cCCHHHHHHHHHHHHHhhcCCchHHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHhhcccc---cchhhHHhhcCChH
Q 009036          280 SRYTNVQVNAVAALVNLSLEKINKMLIV--RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD---DQNKTAIGVLGALP  354 (546)
Q Consensus       280 s~~~~v~~~A~~~L~nLs~~~~nk~~i~--~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~l~  354 (546)
                      ......++.++..|.++.....-...+.  ....+..+...++.|..+-+..|+.++.-|+..   ......+.+ ...+
T Consensus        54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~  132 (309)
T PF05004_consen   54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKP  132 (309)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHH
Confidence            3345566677777666554322222222  124678888889988777777888888777655   122333333 3667


Q ss_pred             HHHHhhccC--CHHHHHHHHHHHHHhhcCch-hHHHHHhc-CcHHHHH--HHHh-C-----------chHHHHHHHHHHH
Q 009036          355 PLLHLLKSD--SERTQHDSALALYHLSLVKS-NRTKLVKL-GSVNALL--GMVN-S-----------GHMTGRVLLILGN  416 (546)
Q Consensus       355 ~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~-Gav~~Lv--~lL~-~-----------~~~~e~al~~L~n  416 (546)
                      .|...+.++  ...++..++.+|.-++.... .-..+.+. ..+..+.  ..+. +           +.+...|+..-..
T Consensus       133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l  212 (309)
T PF05004_consen  133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL  212 (309)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence            788888765  44565666666665544211 11111100 1222111  1111 1           1255566666555


Q ss_pred             hhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          417 LASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       417 La~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      |... +...-.-.-...++.|+.+|.+   .+..++..|-.+|+-|..
T Consensus       213 Llt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  213 LLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence            5543 3322221124568999999998   467888888777766643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.93  E-value=0.36  Score=41.72  Aligned_cols=71  Identities=13%  Similarity=0.073  Sum_probs=56.1

Q ss_pred             cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      .+..|+++|...  .++....-|+.=|..++..-+..+.++.+.|+-..+++|+.+.++++|..|..+++.|-
T Consensus        44 llk~L~~lL~~s--~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKS--DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SH--HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccC--CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            678899999653  24555666667777778766788999999999999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.83  E-value=2.2  Score=47.87  Aligned_cols=198  Identities=13%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHh-hcccccchhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHHH
Q 009036          300 KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIF-SLALDDQNKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALYH  377 (546)
Q Consensus       300 ~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~~  377 (546)
                      ..-+...++.|+...|+.+......+.+..+..+|. .+....+-     ....++.+...+..+. .--.-+++.+|.|
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            344455567899999999999888899988888888 22221110     1234445555544321 1233478889999


Q ss_pred             hhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHH-Hh-CCcHHHHHHHHccCCCCCHHHHH
Q 009036          378 LSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAV-LD-SGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       378 Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i-~~-~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      |++ +...|.+++..-+++.+-.++.+.+  .+..++..+.||.-++.--+.. ++ ....+.....+..   ..+...-
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~---~~E~~~l  645 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV---ADEKFEL  645 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh---hhhHHhh
Confidence            987 4456888888866666555555444  7888999999999877654443 44 4466666655555   2345555


Q ss_pred             HHHHHHHHHhcCChhhHH-HHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          453 SCVSVLYALSHGGLRFKG-LAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       453 ~Av~~L~~L~~~~~~~~~-~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      .+++++..+....+.++. ...-......++.++.++++.++..-..+..++..
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE  699 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence            556666655554333333 33333467888999999999998777666655543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.43  E-value=8.2  Score=45.31  Aligned_cols=122  Identities=17%  Similarity=0.136  Sum_probs=90.0

Q ss_pred             hHHHHHHHHc----cCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccch
Q 009036          270 LLLALRSLII----SRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQN  343 (546)
Q Consensus       270 ~i~~Lv~lL~----s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~  343 (546)
                      +.|.+++.++    ..++++|..|.-+|..+.. ..+..     ...++.|+.++. ++++.+|.++..++.-|+.--.+
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            5777888884    4689999999888887543 22211     236889999998 66899999999999888654333


Q ss_pred             hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCch
Q 009036          344 KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSGH  405 (546)
Q Consensus       344 k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~~  405 (546)
                      -    -...-+.|...|.+.++.+++.|+.+|.+|-..+     |++. |-+..+..+|.+++
T Consensus       995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen  995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPN 1048 (1251)
T ss_pred             c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCc
Confidence            1    1224566778888899999999999999997754     3444 88888888888865

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.32  E-value=0.56  Score=43.83  Aligned_cols=75  Identities=24%  Similarity=0.291  Sum_probs=61.2

Q ss_pred             HHHHHhcCcHHHHHHHHhCc-----------hHHHHHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccCCCCCHHHHH
Q 009036          385 RTKLVKLGSVNALLGMVNSG-----------HMTGRVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~-----------~~~e~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      ...+++.|++..|+++|..-           .....++.+|..|.....|+..+++ .+++..|+..|.+   .+..++.
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s---~~~~~r~  176 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS---PNIKTRK  176 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T---TSHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC---CCHHHHH
Confidence            56777888999999888631           2567799999999999999999997 6799999999987   5689999


Q ss_pred             HHHHHHHHHh
Q 009036          453 SCVSVLYALS  462 (546)
Q Consensus       453 ~Av~~L~~L~  462 (546)
                      .|+.+|..+|
T Consensus       177 ~~leiL~~lc  186 (187)
T PF06371_consen  177 LALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999988

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.30  E-value=0.18  Score=36.48  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=25.2

Q ss_pred             eeCcccccccCCCeec-CCCcc--ccHHHHHHHHh-cCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPVVV-SSGHT--FERACAHVCKT-LGFTPTLVDGT   88 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~-~~~~~cp~~~~   88 (546)
                      +.|||+...|+-||-- .|-|.  ||-...-+... .+.-.||.|.+
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence            6899999999999985 78775  88766544333 33448999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=91.23  E-value=0.22  Score=35.92  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             eCccccc--ccCCCeecCCC-----ccccHHHHHHHHhcC-CCCCCCCC
Q 009036           47 LCPVSGS--LMADPVVVSSG-----HTFERACAHVCKTLG-FTPTLVDG   87 (546)
Q Consensus        47 ~CpI~~~--~m~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~   87 (546)
                      .|-||++  --.+|.+.||.     |-|=+.|+.+|+... ...||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3788885  45778888985     679999999999754 55888873

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=91.07  E-value=18  Score=39.49  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036          272 LALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD  341 (546)
Q Consensus       272 ~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~  341 (546)
                      |+|-.-|.+.-..++-+++.++..++...-.- .+.+ ..+..|-.+|++.....|-.|+++|..|+...
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~-~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~  334 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS-QFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY  334 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH-HHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence            33333344445667777888887776543111 1111 25666777778888999999999999998764

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.95  E-value=0.15  Score=51.90  Aligned_cols=50  Identities=12%  Similarity=0.031  Sum_probs=34.9

Q ss_pred             CCceeCcccccccCC---Ceec-CCCccccHHHHHHHHhcC--CCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMAD---PVVV-SSGHTFERACAHVCKTLG--FTPTLVDGTTPDF   92 (546)
Q Consensus        43 p~~~~CpI~~~~m~d---PV~~-~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~   92 (546)
                      |--..|-||-+.+-.   =--+ .|||+|.-.|+.+||+..  +..||.|+..+..
T Consensus         2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            344579999665421   1123 599999999999999864  3589999844444

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=0.16  Score=49.83  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=35.7

Q ss_pred             eCccccc-ccCCCee----cCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           47 LCPVSGS-LMADPVV----VSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        47 ~CpI~~~-~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      .||+|.. .+..|-+    -+|||+.|-+|.-+-|..|..+||.|+..+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            3888863 3444422    28999999999999999999999999877653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=90.67  E-value=12  Score=39.42  Aligned_cols=97  Identities=12%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             cCChHHHHHHHccC---CHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhc-cC---CHHHHHHHHHHHHHhhc
Q 009036          309 SGLVPPIVDVLMAG---SAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLK-SD---SERTQHDSALALYHLSL  380 (546)
Q Consensus       309 ~g~l~~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~-~~---~~~~~~~A~~aL~~Ls~  380 (546)
                      ...+..|-.+|++.   .+.+-..|+.++..+..++.. -..|.+.|.++.+++.+. .+   +.++....-.+|..||.
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            44566777778765   577888999999988877654 666677999999999998 53   66776777788999999


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH  405 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~  405 (546)
                      +....+++.+.++++.+++++.+++
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCCHH
Confidence            9999999999999999999998754

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=90.53  E-value=3.3  Score=40.88  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhh-CCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHH
Q 009036          407 TGRVLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRME  485 (546)
Q Consensus       407 ~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll  485 (546)
                      ...|+.+|.-+| -++..|..+.+...+..++++|...  .++.++-.++.+|..+..+++.....+++.+++..+..++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            445777887777 4777888888899999999999553  3478889999999888888888888999999999999998


Q ss_pred             hcC--CHHHHHHHHHHHHHhhc
Q 009036          486 RVG--SEHVKEKAKRMLELMKG  505 (546)
Q Consensus       486 ~~~--s~~~k~~A~~lL~~L~~  505 (546)
                      ++.  +.++|-|..+.|..+..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            866  67888899998877754

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.17  Score=51.81  Aligned_cols=48  Identities=10%  Similarity=0.142  Sum_probs=39.5

Q ss_pred             CCceeCcccccccCCCe-----e---cCCCccccHHHHHHHHhcC------CCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPV-----V---VSSGHTFERACAHVCKTLG------FTPTLVDGTTP   90 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV-----~---~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~   90 (546)
                      -.+..|-||++.-.+++     .   .+|-|+||-.||.+|-...      ...||.|+...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            47899999999999998     3   4699999999999997432      35799998654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.33  E-value=1.5  Score=43.91  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=96.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      +..+...+..|.+.+|+....++..|+.|+....+....+. .-+|-.+++-+++....+-..|+.++..+...-.+...
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999876554333222 23566777777888888889999998887764333322


Q ss_pred             HHhcCChHHHHH-HHccC---CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036          306 IVRSGLVPPIVD-VLMAG---SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH  377 (546)
Q Consensus       306 i~~~g~l~~Lv~-lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~  377 (546)
                      -    .+..++. +|..+   +..+++.|-.+|..+...-..      .-+++.|+..+++.++.++..++....+
T Consensus       166 ~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  166 Q----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             H----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence            1    2333443 34333   567889999999887554222      1256677777888888887776655443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=90.09  E-value=0.55  Score=30.07  Aligned_cols=29  Identities=24%  Similarity=0.200  Sum_probs=25.4

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~  298 (546)
                      ++|.+++++.+++++++..|+.+|..++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=89.96  E-value=0.14  Score=52.19  Aligned_cols=45  Identities=13%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             eCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036           47 LCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPD   91 (546)
Q Consensus        47 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~   91 (546)
                      +|-||-+-=+|=-|-+|||-.|-.|+..|..+ +...||.|+..+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            49999999999888899999999999999865 4668998886543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.91  E-value=0.25  Score=50.71  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=35.5

Q ss_pred             CceeCcccccccCC---CeecCCCccccHHHHHHHHhcCC--CCCCCC
Q 009036           44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGF--TPTLVD   86 (546)
Q Consensus        44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~--~~cp~~   86 (546)
                      .-|.|||..+--.|   |+.+.|||..++.+|.+-.+.|.  --||=|
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence            44799999998777   99999999999999999877665  256555

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=89.85  E-value=13  Score=42.55  Aligned_cols=264  Identities=12%  Similarity=0.040  Sum_probs=134.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR  308 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~  308 (546)
                      ......++...++.+.+++.....++.. +...+..+...-.+|.+..+..+.+..++...+..+.+++.--. +..-+ 
T Consensus       358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-  435 (759)
T KOG0211|consen  358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI-  435 (759)
T ss_pred             hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-
Confidence            4444555555555555555555555443 22233444445557777777777777777766666665543211 11111 


Q ss_pred             cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036          309 SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK  387 (546)
Q Consensus       309 ~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~  387 (546)
                      .-.++.++..++...+.++.+-...+..+-...+ .-........++.++.+-....-+++.+.+..+..++....  ..
T Consensus       436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~  513 (759)
T KOG0211|consen  436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VE  513 (759)
T ss_pred             cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hH
Confidence            2356777777888888888887766655433322 22233344566777776666567777777777777665322  12


Q ss_pred             HHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC
Q 009036          388 LVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG  465 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~  465 (546)
                      +......+.+..-+.+.  .+++.|...|..++..-. ... .....++.++.+............-.++..|..++...
T Consensus       514 ~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e  591 (759)
T KOG0211|consen  514 FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE  591 (759)
T ss_pred             HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence            22222222222222222  366777777666664211 111 11223344444443321111222233333333333211


Q ss_pred             hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       466 ~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                            +.....++.+..+..+..+.+|-+++..|..+-.
T Consensus       592 ------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  592 ------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             ------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence                  1111245667777777777777777666655543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=89.63  E-value=0.09  Score=57.84  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=21.5

Q ss_pred             CCCCceeCcccccccCCCee----cC---CCccccHHHHHHHHh
Q 009036           41 EPPGEFLCPVSGSLMADPVV----VS---SGHTFERACAHVCKT   77 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~----~~---~G~ty~r~~i~~~~~   77 (546)
                      ..++.-.|++|..-+.+||-    .+   |+|.||..||..|.+
T Consensus        92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~D  135 (1134)
T KOG0825|consen   92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCND  135 (1134)
T ss_pred             ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHH
Confidence            44455566666666666442    23   566666666666654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.51  E-value=5.2  Score=46.85  Aligned_cols=178  Identities=16%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-----CCchHHHHHh
Q 009036          235 KLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-----EKINKMLIVR  308 (546)
Q Consensus       235 ~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-----~~~nk~~i~~  308 (546)
                      -+++.+.-.|...+..|..+.+..+ ++...+. . .|+-++-.++..|...+..|..+|..|..     ++.+-.   .
T Consensus       705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~  779 (1176)
T KOG1248|consen  705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---A  779 (1176)
T ss_pred             HHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---h
Confidence            3345555667777777777766554 2322222 2 23333333366788888999888887762     221111   1


Q ss_pred             cCChHHHHHHHccC--CHHHHHHHHH--HHhhcccccchhhHHhh---cCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036          309 SGLVPPIVDVLMAG--SAEAQEHACG--AIFSLALDDQNKTAIGV---LGALPPLLHLLKSDSERTQHDSALALYHLSL-  380 (546)
Q Consensus       309 ~g~l~~Lv~lL~~~--~~~~~~~Aa~--~L~~Ls~~~~~k~~i~~---~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-  380 (546)
                      ...|...+.++..+  ..+.+..+..  ++..+..  +.+..+..   .+.+..+...|.+.++++++.|+..+.-++. 
T Consensus       780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~  857 (1176)
T KOG1248|consen  780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK  857 (1176)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence            12455556666555  3333333332  2222221  22222221   3455555566777899999999999888876 


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      .++.+..-...-+++.+..++.+..  ++.++-.+|..|+.
T Consensus       858 ~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  858 FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4444444444446777777776643  55566666666653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.45  E-value=19  Score=40.47  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      ..|..+..+|.+.++.+.-+|+..|.+|+.++..-+.     +...+++++-.. +-.++.-...-|..+..  .++. |
T Consensus       243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~-i  314 (948)
T KOG1058|consen  243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEK-I  314 (948)
T ss_pred             HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHH-H
Confidence            3567777788777777777777777777766543322     122333333221 22222222222222221  1111 1


Q ss_pred             hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      . .|.+-.++++|...+.++++.++.....|...
T Consensus       315 l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  315 L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            1 23455556677777777888777777776553

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.30  E-value=8.3  Score=42.91  Aligned_cols=115  Identities=17%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      |.+..|+....+++..++...+.+|..+.........-+-.+....|..-|.+..+.+|..|..+|..+-.++..    -
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence            556666666778899999999999988876322222222234566666667777899999999999998654322    1


Q ss_pred             hcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 009036          349 VLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVK  390 (546)
Q Consensus       349 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~  390 (546)
                      +..+...++.+++. .++++++.|+   .+++.++.....+++
T Consensus       161 e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Ive  200 (892)
T KOG2025|consen  161 ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIVE  200 (892)
T ss_pred             cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHHH
Confidence            12355667777776 4888888654   455555554444443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.06  E-value=1.3  Score=40.37  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHc--cCCHHHHHHHHHHHHHhhcCCchHHHHHhcC
Q 009036          234 QKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLII--SRYTNVQVNAVAALVNLSLEKINKMLIVRSG  310 (546)
Q Consensus       234 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g  310 (546)
                      ..+..++.+....++..|..+....++....+. ..|+++.++.+..  +.+..++..++.+|..-+.+...|..|.+. 
T Consensus        50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-  128 (157)
T PF11701_consen   50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-  128 (157)
T ss_dssp             HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-
T ss_pred             HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-
Confidence            344555556778888888888877776555555 6899999999998  778888888888887766676667666655 


Q ss_pred             ChHHHHHHHccC-CHH-HHHHHHHHHhhc
Q 009036          311 LVPPIVDVLMAG-SAE-AQEHACGAIFSL  337 (546)
Q Consensus       311 ~l~~Lv~lL~~~-~~~-~~~~Aa~~L~~L  337 (546)
                      +++.|-++++.. +.. +|..|+-.|..|
T Consensus       129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  129 YVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            799999999654 555 788888877643

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.95  E-value=16  Score=40.43  Aligned_cols=162  Identities=15%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHh----cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhc
Q 009036          275 RSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR----SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL  350 (546)
Q Consensus       275 v~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~----~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~  350 (546)
                      +..+.....+.+--|+.+|.-+..+...-..+..    ..++..++..+. +++..+..++++|.|+-.++.++..+...
T Consensus       550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~  628 (745)
T KOG0301|consen  550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR  628 (745)
T ss_pred             HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3444456777788888888877776543333332    124555555555 67888889999999998887666666542


Q ss_pred             CChHHHHHhh---cc-CCHHHHHHHHHHHHHhhc--CchhHHHHHhcCcHHHHHHHHhC-----c--hHHHHHHHHHHHh
Q 009036          351 GALPPLLHLL---KS-DSERTQHDSALALYHLSL--VKSNRTKLVKLGSVNALLGMVNS-----G--HMTGRVLLILGNL  417 (546)
Q Consensus       351 g~l~~Lv~lL---~~-~~~~~~~~A~~aL~~Ls~--~~~n~~~iv~~Gav~~Lv~lL~~-----~--~~~e~al~~L~nL  417 (546)
                        +..+...+   +. .+..+....+....|++.  ...+-+    .|..+.|..++..     .  +...+.+.+|.+|
T Consensus       629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL  702 (745)
T KOG0301|consen  629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL  702 (745)
T ss_pred             --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence              22222222   22 344554544445555443  222211    4555655555543     1  2456788999999


Q ss_pred             hCCcccHHHHHhCCcHHHHHHHHccC
Q 009036          418 ASCSDGRVAVLDSGGVECLVGMLRKG  443 (546)
Q Consensus       418 a~~~e~r~~i~~~g~i~~Lv~lL~~~  443 (546)
                      +..+.+..++.+.--+..+++.++..
T Consensus       703 ~t~~~~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  703 MTVDASVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             ccccHHHHHHHHhcCHHHHHHHHHHh
Confidence            99888888888877888888888774

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=88.79  E-value=0.77  Score=29.39  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          353 LPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       353 l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      +|.+++++.++++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.32  E-value=0.34  Score=48.66  Aligned_cols=38  Identities=18%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCCC--CceeCcccccccCCCeecCCCccccHHHHHHHHh
Q 009036           40 AEPP--GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKT   77 (546)
Q Consensus        40 ~~~p--~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~   77 (546)
                      .++|  ++=.||||..-=-..|..||||.-|..||.+++-
T Consensus       415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm  454 (489)
T KOG4692|consen  415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM  454 (489)
T ss_pred             CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHh
Confidence            3455  7889999998888889999999999999999764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=88.17  E-value=0.44  Score=34.02  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=21.6

Q ss_pred             Cccccccc--CCCeec--CCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           48 CPVSGSLM--ADPVVV--SSGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        48 CpI~~~~m--~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      ||+|.+-|  +|=-..  +||+..||-|..+-.+.+...||-|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78898887  332233  78999999998777665667899998754

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.81  E-value=39  Score=39.28  Aligned_cols=133  Identities=16%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             CChHHHHHHHHc------c--CCHHHHHHHHHHHHHhhc---CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhh
Q 009036          268 PRLLLALRSLII------S--RYTNVQVNAVAALVNLSL---EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS  336 (546)
Q Consensus       268 ~g~i~~Lv~lL~------s--~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~  336 (546)
                      ++.++.++..|.      .  .++.-.+.|+.++.+|+.   ...--+-.++.=.+..+.-.+++...-+|..||+++..
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            367888888776      2  355666778888888763   12221222333344555556678888899999999999


Q ss_pred             ccccc-chhhHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhH-HHHHhc--CcHHHHHHHHh
Q 009036          337 LALDD-QNKTAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNR-TKLVKL--GSVNALLGMVN  402 (546)
Q Consensus       337 Ls~~~-~~k~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~--Gav~~Lv~lL~  402 (546)
                      ++..+ .....  -..+++.....|. +.+..++..|+.||..+-.+.+.. .++-..  +.++.|+.+..
T Consensus       489 ~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n  557 (1010)
T KOG1991|consen  489 FSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN  557 (1010)
T ss_pred             HHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence            88443 22221  1345666677777 567789999999999987765433 333332  34444444443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=87.80  E-value=11  Score=43.50  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=107.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc---CChHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT---PRLLLALRSLI-ISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~---~g~i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      +.+-..+.+.+|..+.+|++.+.....+..    ...+   .|.+..++... ...+..+...|+..|..|+.. ...-.
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            344455678899999999999998876532    2222   23444444433 345667777788888877764 22222


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cc-
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VK-  382 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~-  382 (546)
                      .+ ..+.++.|++-+......++..+..++.......      .....++.+..+++++++..+......+-.... .. 
T Consensus       332 ~~-~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  332 KY-AKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HH-HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            22 2357888999998887777777766665543311      123466777888899999998887665554433 22 


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHh
Q 009036          383 SNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNL  417 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nL  417 (546)
                      .+...-.-.++++.++....+.  +++..++.++.-+
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v  441 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV  441 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence            2222212224666666666553  3666655555444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=87.66  E-value=7.3  Score=42.77  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=67.7

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      ...+..++..-+ ++.++..-|...|..+.+.-+....     .+|..++.|+...|..++..|+..|-.++.+ ++...
T Consensus        22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~   95 (556)
T PF05918_consen   22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS   95 (556)
T ss_dssp             HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred             HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence            356677777765 5677888888999988887665543     3688999999999999999999999999986 45554


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL  337 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L  337 (546)
                      +     ++..|+.+|.+.++.....+-.+|..|
T Consensus        96 k-----vaDvL~QlL~tdd~~E~~~v~~sL~~l  123 (556)
T PF05918_consen   96 K-----VADVLVQLLQTDDPVELDAVKNSLMSL  123 (556)
T ss_dssp             H-----HHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4     356788889887655544444444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=87.48  E-value=11  Score=42.99  Aligned_cols=220  Identities=11%  Similarity=0.067  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHH-hhcCChHHHH
Q 009036          281 RYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAI-GVLGALPPLL  357 (546)
Q Consensus       281 ~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i-~~~g~l~~Lv  357 (546)
                      ..+...-.+..++...+.. ..+...+ . ..+...+..+. +..+-++..|+++++.-+...   ... ..++.+..|.
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~  536 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLL  536 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHHHH
Confidence            3444444566666544432 2222211 1 12333444444 335667778888887766211   111 1256778888


Q ss_pred             HhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCCcccHHHHHhCCcH
Q 009036          358 HLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLASCSDGRVAVLDSGGV  433 (546)
Q Consensus       358 ~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~~e~r~~i~~~g~i  433 (546)
                      ++....+.++......+|+..+..+.-.....+....|.++.++..    +-+...+-.++..|+...++- .=+..-.|
T Consensus       537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~i  615 (1005)
T KOG2274|consen  537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLI  615 (1005)
T ss_pred             HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHH
Confidence            8887777888778888999999877666666677788887777643    337777777777777522211 11223578


Q ss_pred             HHHHHHHccCCC-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHH-HhcCCHHHHHHHHHHHHHhhcCC
Q 009036          434 ECLVGMLRKGTE-LSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRM-ERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       434 ~~Lv~lL~~~~~-~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      |.++..|..... .......-|+.+|..+.+.. +...+.+.. -+++.+.+. +++++..+-..+.++|+.+-...
T Consensus       616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            999999987421 12445566777777666642 233333222 156666665 78888999999999999987653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.37  E-value=13  Score=42.22  Aligned_cols=218  Identities=16%  Similarity=0.079  Sum_probs=125.1

Q ss_pred             HHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHH
Q 009036          277 LIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPL  356 (546)
Q Consensus       277 lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~L  356 (546)
                      .+.++-+.++..++..|..+....+....+...+++......|++.++-+--+|...+..|+..       .....++.|
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL  807 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL  807 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence            3444556677788888888887666666677788999999999999888888888877777653       223455555


Q ss_pred             HHhhccC---C-HHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh
Q 009036          357 LHLLKSD---S-ERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD  429 (546)
Q Consensus       357 v~lL~~~---~-~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~  429 (546)
                      .+.-.+.   . .+.+.....++.++.. -.+...+..+ -.+...+..+.+++  .+..+++.|.+||.-...+-.=.=
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            5532221   1 2333333356665544 2222222221 23344444445544  688899999999863321111011


Q ss_pred             CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC---CcHHHHHHHHhcC-CHHHHHHHHHHHHHhh
Q 009036          430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA---GMAEVLMRMERVG-SEHVKEKAKRMLELMK  504 (546)
Q Consensus       430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~---g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~  504 (546)
                      +.+...++.+...+  ++...+..|+..+..+-.+...-.-.+.++   .....+...+... .+.+|-+|...|..+-
T Consensus       887 ~ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  887 HEVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             HHHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            23455566666554  567889999999888776532111111111   1334444444433 4556666666665553

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.35  E-value=3.9  Score=40.62  Aligned_cols=186  Identities=19%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhc--CChHHHHHhhcc----CCHHHHHHHHHHHHHhhcCchhHH
Q 009036          313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL--GALPPLLHLLKS----DSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~l~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      ..+..++.....+.+--+..+++-+..+......+...  +....+..++..    ..+..+..++++|+|+-.+...+.
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~  145 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ  145 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence            33444444444444555556666555555443333322  124444444433    367788889999999998888888


Q ss_pred             HHHhc-C-cHHHHHHHHhC------chHHHHHHHHHHHhhCCc-ccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          387 KLVKL-G-SVNALLGMVNS------GHMTGRVLLILGNLASCS-DGR-VAVLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       387 ~iv~~-G-av~~Lv~lL~~------~~~~e~al~~L~nLa~~~-e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                      .+.+. + .+...+..+..      ..++-.+..++.|++..- ..+ ..=.....+..+++.+.... .++++...++.
T Consensus       146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~-~d~Ea~~R~Lv  224 (268)
T PF08324_consen  146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE-SDEEALYRLLV  224 (268)
T ss_dssp             HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH-TSHHHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc-CCHHHHHHHHH
Confidence            88776 3 34433333322      237777888899987521 011 00000113445555333321 46888999999


Q ss_pred             HHHHHhcCChhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHH
Q 009036          457 VLYALSHGGLRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRM  499 (546)
Q Consensus       457 ~L~~L~~~~~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~l  499 (546)
                      +|.+|+..+......+...|+...+.... ....+++++.+.++
T Consensus       225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            99999977766666666666666666664 45578899888764

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.33  E-value=0.18  Score=48.91  Aligned_cols=49  Identities=18%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             CceeCcccccccCCCe----------ecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPV----------VVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDF   92 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV----------~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~   92 (546)
                      ++=.|-+|++=+-+-|          .++|+|.|---||.-|--- ...+||-|.+..+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            6668999999888777          6899999999999999654 45589988776543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.09  E-value=12  Score=41.92  Aligned_cols=96  Identities=19%  Similarity=0.212  Sum_probs=56.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcC
Q 009036          231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSG  310 (546)
Q Consensus       231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g  310 (546)
                      .+-+.|++++.-+|-..++-|..|-.      ..++ ..++|.+...|.+.+..++.+|.-++..+-...   ..+. ..
T Consensus       103 a~RkDLQHPNEyiRG~TLRFLckLkE------~ELl-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pD  171 (948)
T KOG1058|consen  103 AYRKDLQHPNEYIRGSTLRFLCKLKE------PELL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PD  171 (948)
T ss_pred             HHhhhccCchHhhcchhhhhhhhcCc------HHHh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CC
Confidence            44455667776666666665554322      1111 135677777788999999999998888765431   1111 12


Q ss_pred             ChHHHHHHHc-cCCHHHHHHHHHHHhhc
Q 009036          311 LVPPIVDVLM-AGSAEAQEHACGAIFSL  337 (546)
Q Consensus       311 ~l~~Lv~lL~-~~~~~~~~~Aa~~L~~L  337 (546)
                      +-+.+-+.|. ..++..+.+|--.|...
T Consensus       172 apeLi~~fL~~e~DpsCkRNAFi~L~~~  199 (948)
T KOG1058|consen  172 APELIESFLLTEQDPSCKRNAFLMLFTT  199 (948)
T ss_pred             hHHHHHHHHHhccCchhHHHHHHHHHhc
Confidence            3344444554 34777777776555543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=87.09  E-value=46  Score=39.04  Aligned_cols=245  Identities=15%  Similarity=0.082  Sum_probs=135.3

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ..++.|+..|++.+..++..|++-+..++...+   ..++ ..+|...++++.- ++...-..|+.+|..|+..---...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            455677777888999999999999999998876   2222 2356666664443 3455566888889888753211111


Q ss_pred             HHhcCChHHHHHHHcc--------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHH-----HhhccCCHHHHHHHH
Q 009036          306 IVRSGLVPPIVDVLMA--------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLL-----HLLKSDSERTQHDSA  372 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~--------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv-----~lL~~~~~~~~~~A~  372 (546)
                      ..+ .++|.++.-|.-        ....+|..|+-+++.++...+....   .+.+..|.     ..+-+.....++.|.
T Consensus       417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            111 245555555531        1356888899999988765433210   11222222     223334566777777


Q ss_pred             HHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcc-cHHHHHh-CCcHHHHHHHHccC--CCCCH
Q 009036          373 LALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSD-GRVAVLD-SGGVECLVGMLRKG--TELSE  448 (546)
Q Consensus       373 ~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e-~r~~i~~-~g~i~~Lv~lL~~~--~~~s~  448 (546)
                      .|+...-.         +.|-+|.=++++..-+.  -++   .+.+.|-. -...+.+ .|....+++-|...  ..-+.
T Consensus       493 AAlqE~VG---------R~~n~p~Gi~Lis~~dy--~sV---~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~  558 (1133)
T KOG1943|consen  493 AALQENVG---------RQGNFPHGISLISTIDY--FSV---TNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV  558 (1133)
T ss_pred             HHHHHHhc---------cCCCCCCchhhhhhcch--hhh---hhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH
Confidence            77765432         22333333333332220  011   11111111 1122333 45555555544332  12468


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHH
Q 009036          449 STQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAK  497 (546)
Q Consensus       449 ~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~  497 (546)
                      ..+|.+..+|..|....+    .....+.++.|+......+...+..+.
T Consensus       559 ~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~  603 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMRHGVF  603 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHhhhhH
Confidence            999999999999875332    222335677888877777777665443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.88  E-value=0.19  Score=36.43  Aligned_cols=44  Identities=18%  Similarity=0.156  Sum_probs=36.1

Q ss_pred             eCcccccccCCCeecCCCc-cccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           47 LCPVSGSLMADPVVVSSGH-TFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        47 ~CpI~~~~m~dPV~~~~G~-ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      .|-||.+-=-|-|+--||| -.|..|=.+.+...+..||.|+.++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            4999999999999999999 6788887775555777999997653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=86.78  E-value=1.7  Score=39.62  Aligned_cols=141  Identities=19%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             HHHHHHHHc--cCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-ch-hhH
Q 009036          271 LLALRSLII--SRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QN-KTA  346 (546)
Q Consensus       271 i~~Lv~lL~--s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~-k~~  346 (546)
                      +..++..|.  ....+++..+.-++..+-  +..+....+. +-+.+-..+..++.+....+..+|..|--.. +. ...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            344555444  345667777777776652  2223222211 2233333444443445556666666654332 33 444


Q ss_pred             HhhcCChHHHHHhhc--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHH
Q 009036          347 IGVLGALPPLLHLLK--SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILG  415 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~--~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~  415 (546)
                      +...|.++.++.++.  .++......++.+|..-|.....|..+. ..+++.|-+++....    ++..|+-+|.
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            456889999999998  6788888888888888777655555544 457899999985432    4566655554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=86.66  E-value=9.3  Score=40.74  Aligned_cols=110  Identities=19%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cc--------h-----HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHh
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSLE-KI--------N-----KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIF  335 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~--------n-----k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~  335 (546)
                      .+..|+.+|.+  +++...|+..+.-|..+ ++        +     |.++.. ..+|.|++-.+..+.+.+.+-..+|.
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            45666666655  55566677776666554 21        1     222222 35778888888777778888888888


Q ss_pred             hcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          336 SLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       336 ~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      ++..+-.....+.+ ...+|.|++-|..++.+++..++.+|..+....
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            87664443333333 468888999998889999999999999887654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.46  E-value=2.8  Score=34.55  Aligned_cols=71  Identities=24%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~  299 (546)
                      .+++..+..|.++.+-+|-.++..|+.+.....  .......+++..+...|.++|+-+--+|+..|..|+..
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            467788889999999999999999999988765  22222356788888889999999999999999888753

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.19  E-value=3.7  Score=36.82  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~  299 (546)
                      .+++..|.++|+++++.+|..|+..|..+.+.+ ......+.+.+++..|+.++. ..+..++..++..+...+..
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999999984 457778888999999999987 46889999999998877653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=86.01  E-value=49  Score=34.79  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-----CHHHHHHHHHHHHHhhc-CCchHHHH-HhcCCh
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-----YTNVQVNAVAALVNLSL-EKINKMLI-VRSGLV  312 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-----~~~v~~~A~~~L~nLs~-~~~nk~~i-~~~g~l  312 (546)
                      +..+..+|++.|.++...+...|....++.....+...+...     -..++..=+..|.-|.. +...|.++ ++.+++
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL  189 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            457788999999999999999999999888777777765421     11222222333333332 34555555 477999


Q ss_pred             HHHHHHHccC---------C---HH---HHHHHHHHHhhccccc
Q 009036          313 PPIVDVLMAG---------S---AE---AQEHACGAIFSLALDD  341 (546)
Q Consensus       313 ~~Lv~lL~~~---------~---~~---~~~~Aa~~L~~Ls~~~  341 (546)
                      +.+..+|.+.         .   ++   .-..++.+++|+..+.
T Consensus       190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            9999998642         1   12   2345566677776654

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=85.73  E-value=0.55  Score=44.68  Aligned_cols=56  Identities=9%  Similarity=-0.017  Sum_probs=41.2

Q ss_pred             ceeCcccccccCCCeec-CCCccccHHHHHHHHhc-CCCCCCC--CCCCCCCCCCcccHH
Q 009036           45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTL-GFTPTLV--DGTTPDFSTVIPNLA  100 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~-~~~~cp~--~~~~~~~~~l~pn~~  100 (546)
                      +.+|||+++...-|++- .|.|.|++..|...++. -.+-||+  |.+......+.-.+-
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~I  248 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHI  248 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHH
Confidence            45799999999999885 99999999999998773 2345664  655555545554433

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=85.37  E-value=0.15  Score=39.74  Aligned_cols=46  Identities=24%  Similarity=0.218  Sum_probs=21.8

Q ss_pred             ceeCcccccccC-C---Ceec----CCCccccHHHHHHHHhc---CC---C----CCCCCCCCC
Q 009036           45 EFLCPVSGSLMA-D---PVVV----SSGHTFERACAHVCKTL---GF---T----PTLVDGTTP   90 (546)
Q Consensus        45 ~~~CpI~~~~m~-d---PV~~----~~G~ty~r~~i~~~~~~---~~---~----~cp~~~~~~   90 (546)
                      +..|+||...+. +   |+++    .||++|=..|+.+||..   .+   .    .||.|..++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i   65 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI   65 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence            467999998754 2   5554    68999999999999963   11   1    499987654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=85.35  E-value=38  Score=32.98  Aligned_cols=134  Identities=21%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             HHHHHH-HHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036          271 LLALRS-LIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       271 i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      ++.|+. +-+..+++.+...+..|-.++.+. .+...     ++..|..+...+..+.+..+.+.+..+...++- ..  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH--
Confidence            344444 445678899999999999998876 44433     345566666677777766677777766543321 10  


Q ss_pred             hcCChHHHHHhh--------ccC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHH-hCch--HHHHHHHHHH
Q 009036          349 VLGALPPLLHLL--------KSD--SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV-NSGH--MTGRVLLILG  415 (546)
Q Consensus       349 ~~g~l~~Lv~lL--------~~~--~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL-~~~~--~~e~al~~L~  415 (546)
                        +.++.++..+        .++  .-+.....+.++..+|...++    .-...++.+..+| .+.+  .+..++..|.
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~  147 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA  147 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence              3344444331        111  223334445678888886655    2224577788888 4432  7788899999


Q ss_pred             Hhh
Q 009036          416 NLA  418 (546)
Q Consensus       416 nLa  418 (546)
                      .||
T Consensus       148 ~Lc  150 (234)
T PF12530_consen  148 PLC  150 (234)
T ss_pred             HHH
Confidence            998

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=84.95  E-value=22  Score=42.11  Aligned_cols=222  Identities=17%  Similarity=0.127  Sum_probs=123.0

Q ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHhhcC--CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-cc---ch
Q 009036          271 LLALRSLIIS-RYTNVQVNAVAALVNLSLE--KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DD---QN  343 (546)
Q Consensus       271 i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~---~~  343 (546)
                      +..|...+++ ...+.+.+|+..|..|+..  ++++.    .-++|-++.++.+....+|..|+.+|..+.. ..   ..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4445555544 3556778899999999874  44442    2489999999999999999999999876533 22   22


Q ss_pred             hhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcC------------------chh------------HHHHHhcC
Q 009036          344 KTAIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLV------------------KSN------------RTKLVKLG  392 (546)
Q Consensus       344 k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~------------------~~n------------~~~iv~~G  392 (546)
                      -+.|.-.=.+|.|-.++.+ ....++..=+..|..|+..                  ..|            ...++. +
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-~  578 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-T  578 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-H
Confidence            2333333467777778776 3333433333334333321                  000            001110 1


Q ss_pred             cHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh---CC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc--C
Q 009036          393 SVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD---SG-GVECLVGMLRKGTELSESTQESCVSVLYALSH--G  464 (546)
Q Consensus       393 av~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~---~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~--~  464 (546)
                      +-...+.+|.+..  ++..-+..|.-||.      .+.+   .+ .+..|+..|..   .+...+-.=..-+..+|.  +
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLND---kDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLND---KDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcC---ccHHHHHHHHhhccceEEEEe
Confidence            1122233444433  34434444555553      2222   12 45666666665   223333222222222222  1


Q ss_pred             ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          465 GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       465 ~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      .     .-.+++.+|.|.+-+.++.+.+-.+|.+.|..|.+..--++
T Consensus       650 ~-----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K  691 (1431)
T KOG1240|consen  650 W-----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK  691 (1431)
T ss_pred             e-----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence            1     11234567888888999999999999999999998765444

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=84.74  E-value=0.6  Score=34.19  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=34.1

Q ss_pred             eeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS   93 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~   93 (546)
                      ..|=.|...=...++++|||-.|+.|..-   +...-||.|+.++...
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCC
Confidence            34677777778899999999999999522   2344799999887653

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=0.57  Score=47.60  Aligned_cols=47  Identities=23%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      .+.|..-.|-||.+=..+-|.+||||+.|  |+.-.  +....||.|++.+
T Consensus       300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI  346 (355)
T KOG1571|consen  300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS--KHLPQCPVCRQRI  346 (355)
T ss_pred             cccCCCCceEEecCCccceeeecCCcEEE--chHHH--hhCCCCchhHHHH
Confidence            34566667999999999999999999998  76443  2344599998754

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.49  E-value=2.8  Score=40.09  Aligned_cols=105  Identities=19%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC--CCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHH
Q 009036          407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT--ELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMR  483 (546)
Q Consensus       407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~--~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~  483 (546)
                      ...|+.+|-.+++.++.+..++++..--.|...|...+  ..-+-.+-.+++++..|..+ +..+-.......+++.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            45688889999999999999998764444444443321  12344677889999999884 5566666777789999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          484 MERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       484 ll~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      ++..|++.-|..|..++..+-.++.+-+
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLq  224 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQ  224 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence            9999999999999999998877655444

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=84.47  E-value=0.68  Score=47.29  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             ceeCcccccccCCCeecCCCccccHHHHHHHHhc-CCCCCCCCCCCCCCCCCccc
Q 009036           45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-GFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn   98 (546)
                      ...|.+++..|.|||-+..|..||-..|--|++. |..||  +++++...+|++=
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~g~nP~--tG~kl~~~dLIkL   92 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKHGTNPI--TGQKLDGKDLIKL   92 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHHcCCCCC--CCCccccccceee
Confidence            4579999999999999999999999999999985 45566  6788888787763

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.39  E-value=5.7  Score=35.09  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh-hhHHhhcCChHHHHHHHHcc---CCHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE-TRVSLCTPRLLLALRSLIIS---RYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~l~~~g~i~~Lv~lL~s---~~~~v~~~A~~~L~nLs~~  299 (546)
                      ..++..|.++|+++++.+|..|+..|-.+.+.+.. ....+....++.-|+.++..   .+..++..++..|.+.+..
T Consensus        36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999998765 66777777888889999875   4889999999999887653

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.16  E-value=5.2  Score=35.94  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~  299 (546)
                      ..++..|.++|.+.++.+|..|+..|..+.+.+. .....+.+..++..|+.++.. .+..++..++..|...+..
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999866 466678889999999999987 7899999999998887653

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.13  E-value=65  Score=34.66  Aligned_cols=160  Identities=16%  Similarity=0.022  Sum_probs=100.6

Q ss_pred             CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHH-HHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036          223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALR-SLIISRYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv-~lL~s~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      ++-.+.+..+.++.++++...+.-|++.|.+.+...+.-....... .+..++ .+.+..+.+|+-.++..|..+...-.
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~  332 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS  332 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence            3445667777778888888889999999999988755443333332 234444 45556678899888888877655433


Q ss_pred             hHHHHHhcCCh---HHHHHHHccCCHHHHHHHHHHHhhcccccc--hhhHHhh--cCChHHHHHhhccCCHHHHHHHHHH
Q 009036          302 NKMLIVRSGLV---PPIVDVLMAGSAEAQEHACGAIFSLALDDQ--NKTAIGV--LGALPPLLHLLKSDSERTQHDSALA  374 (546)
Q Consensus       302 nk~~i~~~g~l---~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~a  374 (546)
                      +...  +.+.+   -.+..++.+.++++|..|..++..|+....  .+..+.+  .+...+|+-.|.+.++.+ ..|+..
T Consensus       333 ~~~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~  409 (533)
T KOG2032|consen  333 NDDL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRS  409 (533)
T ss_pred             hcch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHH
Confidence            3322  12223   344456677899999999888888776542  2333332  344555666666677766 556666


Q ss_pred             HHHhhcCchhHH
Q 009036          375 LYHLSLVKSNRT  386 (546)
Q Consensus       375 L~~Ls~~~~n~~  386 (546)
                      ....|.-.-.++
T Consensus       410 ~~~~c~p~l~rk  421 (533)
T KOG2032|consen  410 ELRTCYPNLVRK  421 (533)
T ss_pred             HHHhcCchhHHH
Confidence            666665443343

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=83.84  E-value=4.7  Score=38.68  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhhcCC--chHHHHHhcCChHH
Q 009036          242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-----SRYTNVQVNAVAALVNLSLEK--INKMLIVRSGLVPP  314 (546)
Q Consensus       242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-----s~~~~v~~~A~~~L~nLs~~~--~nk~~i~~~g~l~~  314 (546)
                      .-...|+..|.-++.+ ++.|..+.++.+--.|..+|.     +.....+..++.++..|..++  ..-..+....++|.
T Consensus       115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            3345677777777765 678888887765444445553     234567788999999988864  33444556789999


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036          315 IVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      .++++..|+.-.+..|+.++..+..++..-..|
T Consensus       194 cLrIme~gSElSktvaifI~qkil~dDvGLqYi  226 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYI  226 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHH
Confidence            999999998888888888887776666543333

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=83.75  E-value=7.8  Score=44.32  Aligned_cols=189  Identities=15%  Similarity=0.152  Sum_probs=111.2

Q ss_pred             CCCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhH------Hhhc----CChHHHHHHHHccCCHHHHHHH
Q 009036          222 HPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRV------SLCT----PRLLLALRSLIISRYTNVQVNA  289 (546)
Q Consensus       222 ~~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~------~l~~----~g~i~~Lv~lL~s~~~~v~~~A  289 (546)
                      ++.+.+....++..|+.++..  -.+.+.+.-+..+++.  .|.      .+.+    ...+|.|+..........+.+-
T Consensus       810 ~~~s~~ia~klld~Ls~~~~g--~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~y  887 (1030)
T KOG1967|consen  810 HPESSEIAEKLLDLLSGPSTG--SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNY  887 (1030)
T ss_pred             CcccchHHHHHHHhcCCcccc--chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHH
Confidence            333456667778877653321  1233333333333221  111      1222    2468888887775555566666


Q ss_pred             HHHHHHhhcCCchHHHHH-h-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCC---
Q 009036          290 VAALVNLSLEKINKMLIV-R-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDS---  364 (546)
Q Consensus       290 ~~~L~nLs~~~~nk~~i~-~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~---  364 (546)
                      +.+|.+.-.+-.. ..+. + ...+|.|++.|.-.+..+|..+..+|.-+....+.-..-.....+|.++.+=.+.+   
T Consensus       888 l~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~  966 (1030)
T KOG1967|consen  888 LEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNM  966 (1030)
T ss_pred             HHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcch
Confidence            6666665543222 2222 1 24788899999999999998888888766443332111112345666666655533   


Q ss_pred             HHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHH
Q 009036          365 ERTQHDSALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLI  413 (546)
Q Consensus       365 ~~~~~~A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~  413 (546)
                      ..++..|+.+|..|.. .+.+.-.-.+..++..|+..|.++.  +++.|..+
T Consensus       967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            6788899999999987 4443333344467888999998865  77777654

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.47  E-value=12  Score=43.51  Aligned_cols=241  Identities=16%  Similarity=0.075  Sum_probs=145.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc---CCchHHHHHhcCCh
Q 009036          236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL---EKINKMLIVRSGLV  312 (546)
Q Consensus       236 L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~---~~~nk~~i~~~g~l  312 (546)
                      |++.+.+.|.+.+..+..+....++|.....+.--+|.++.-+..-...+|...+.+|.--..   +-..++       +
T Consensus       476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L  548 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L  548 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence            477788889999999999988889998888888889999888876666666665555432111   111121       2


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHhhc-ccccchhhHHhhcCChHHHHHhhccC---------------------CHH---
Q 009036          313 PPIVDVLMAG-SAEAQEHACGAIFSL-ALDDQNKTAIGVLGALPPLLHLLKSD---------------------SER---  366 (546)
Q Consensus       313 ~~Lv~lL~~~-~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~l~~Lv~lL~~~---------------------~~~---  366 (546)
                      -.|+-+|+.. +..++.........| +.+...|..+.+-|.++.|...|+..                     ++.   
T Consensus       549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~  628 (2799)
T KOG1788|consen  549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQ  628 (2799)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhh
Confidence            3455566655 334443333333333 44556677777888888877665430                     100   


Q ss_pred             -----------------------HHHH------HHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHH
Q 009036          367 -----------------------TQHD------SALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGN  416 (546)
Q Consensus       367 -----------------------~~~~------A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~n  416 (546)
                                             +...      ...+|..|.. +.+|+..+.++.++..++.++-+...+...+.++..
T Consensus       629 ~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLrivsc  708 (2799)
T KOG1788|consen  629 HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIVSC  708 (2799)
T ss_pred             ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHHHH
Confidence                                   0000      1123444433 456777777777777777777666667777777777


Q ss_pred             hhCCcccHHHHHhCCcHHHHHHHHccCCCC---------CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh
Q 009036          417 LASCSDGRVAVLDSGGVECLVGMLRKGTEL---------SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER  486 (546)
Q Consensus       417 La~~~e~r~~i~~~g~i~~Lv~lL~~~~~~---------s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~  486 (546)
                      |-..+..   -+.+.-+-.+|+.|.++...         ........+++||.+..-+...+..+.+++++..|...+.
T Consensus       709 Litvdpk---qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  709 LITVDPK---QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             HhccCcc---cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence            6643221   11223445667777664211         1223445567778777655567777888888877766543

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=83.09  E-value=0.77  Score=45.94  Aligned_cols=51  Identities=14%  Similarity=0.114  Sum_probs=34.2

Q ss_pred             CCceeCcccccccC--CCee--cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMA--DPVV--VSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST   94 (546)
Q Consensus        43 p~~~~CpI~~~~m~--dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~   94 (546)
                      .+++ ||+|.+-|.  |--.  -+||...||-|...--+.-+.-||-|+......+
T Consensus        13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            4455 999999874  3333  3789999999964433333457888887766544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=83.04  E-value=21  Score=38.05  Aligned_cols=187  Identities=13%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             ChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh-ccCCHHHHHHHH----HHHHHhhc-Cch
Q 009036          311 LVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSA----LALYHLSL-VKS  383 (546)
Q Consensus       311 ~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~----~aL~~Ls~-~~~  383 (546)
                      .+..++.+..+. +...+..++..|..|..--....  .-...+..+...+ .......+..++    |....|.. .+.
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            556666665444 57777777777776643210000  0012233333333 222333333333    44444433 221


Q ss_pred             hHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCC-cc--------cHHHHHh----CCcHHHHHHHHccCCCCCHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASC-SD--------GRVAVLD----SGGVECLVGMLRKGTELSEST  450 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~-~e--------~r~~i~~----~g~i~~Lv~lL~~~~~~s~~~  450 (546)
                           .....+..|+++|.++.+...+...+.-|... ++        +..-+..    ...+|.|++..+..   +...
T Consensus       268 -----~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~---~~~~  339 (415)
T PF12460_consen  268 -----LATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA---DDEI  339 (415)
T ss_pred             -----hHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc---Chhh
Confidence                 12235677888998877777788888777765 21        1111222    23566676666663   3457


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          451 QESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       451 ~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +.+.+.+|..+..+-+.-.-.-.-...+|.|++-+...++.++..+..+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            888888888888754321111111237889999999999999999999999988765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=82.80  E-value=46  Score=39.07  Aligned_cols=242  Identities=14%  Similarity=0.093  Sum_probs=131.0

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      +++..|+..|.+.|..++.-|+.-+..+.....  ..+++ .+|..+++++.-. ++..-..|+-+|..|+...-.....
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            467777777888899999999999988877533  22332 4677778866544 3566668888888886543111110


Q ss_pred             hhcCChHHHHHhhccC--------CHHHHHHHHHHHHHhhcCch-h-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHH
Q 009036          348 GVLGALPPLLHLLKSD--------SERTQHDSALALYHLSLVKS-N-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILG  415 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~~--------~~~~~~~A~~aL~~Ls~~~~-n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~  415 (546)
                      . ..+++.+++-|.-+        ...++..|+-++|.++...+ + -+.++..=+-..|+..+-+.+  .+..|.++|-
T Consensus       418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            0 12344444444221        34578888889999876322 2 122222212223334445555  5555555554


Q ss_pred             HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHH-HhcCCHHHHH
Q 009036          416 NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRM-ERVGSEHVKE  494 (546)
Q Consensus       416 nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~l-l~~~s~~~k~  494 (546)
                      ....         ..|-.|.=+.++...+--+-..+.++-..|..--...+..+.-     ++..|+.. +.+-+..+|+
T Consensus       497 E~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  497 ENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRE  562 (1133)
T ss_pred             HHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHH
Confidence            3221         1121111111221110001122344433332222222222222     22333333 6677999999


Q ss_pred             HHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          495 KAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       495 ~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      -|+..|..|+...++.-.+...-.++++....-.
T Consensus       563 laa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~  596 (1133)
T KOG1943|consen  563 LAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDA  596 (1133)
T ss_pred             HHHHHHHHHHHhhHHhhcccchhhhhhhhcCCCh
Confidence            9999999999877776666677777777776655

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.65  E-value=0.73  Score=48.46  Aligned_cols=51  Identities=12%  Similarity=0.000  Sum_probs=37.0

Q ss_pred             CCCceeCccccccc-----------------CCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLM-----------------ADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m-----------------~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +-..--|+||+.-.                 ++=.++||.|.|-|.|+++|.+.-.--||+|+.++++
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34445699997531                 1234569999999999999988444479999887754

>PRK14707 hypothetical protein; Provisional

Probab=82.62  E-value=1.2e+02  Score=38.75  Aligned_cols=243  Identities=18%  Similarity=0.067  Sum_probs=117.9

Q ss_pred             CCCchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHH-hhcCC
Q 009036          223 PNSNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVN-LSLEK  300 (546)
Q Consensus       223 ~~~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~n-Ls~~~  300 (546)
                      .++...+-.+++.+. =++......|+..|.......+..+..|-..|+-..|-.+.+-++..+...|+..|.. +..+.
T Consensus       201 ~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~  280 (2710)
T PRK14707        201 AMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDP  280 (2710)
T ss_pred             ccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH
Confidence            445566667777662 2233334455555554433334555555555555555555555677677777766653 44443


Q ss_pred             chHHHHHhcCChHHHHHHHccC-CHHHHHHHHH-HHhhcccccchhhHHhhcCChHHHHHhhcc-CCHHHHHHHHHHHH-
Q 009036          301 INKMLIVRSGLVPPIVDVLMAG-SAEAQEHACG-AIFSLALDDQNKTAIGVLGALPPLLHLLKS-DSERTQHDSALALY-  376 (546)
Q Consensus       301 ~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~-~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~-  376 (546)
                      .-+..+ ....+...+.-|+.- +..+-..|+. +-..|..+.+.+..+-.. .+..++.-|.+ .+..+...|+.+|. 
T Consensus       281 ~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~  358 (2710)
T PRK14707        281 GLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAE  358 (2710)
T ss_pred             HHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence            333332 233444455555543 4444444444 444565554444333222 33333444443 34444455555444 


Q ss_pred             HhhcCchhHHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHH-HhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036          377 HLSLVKSNRTKLVKLGSVNALLGMVNS-G--HMTGRVLLILG-NLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       377 ~Ls~~~~n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~-nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      .|+...+-++.+--. .+...++.|+. +  ..+..+...|. .|...++-+..+ +...+..+++-|.+-  .+..+..
T Consensus       359 rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKW--Pd~~~C~  434 (2710)
T PRK14707        359 RLVADPELRKDLEPQ-GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKW--PDLPICG  434 (2710)
T ss_pred             HhccCHhhhcccchh-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcC--CcchhHH
Confidence            466665555554433 34444444443 2  24444444443 344444444443 334556666666664  2344555


Q ss_pred             HHHHHHHHHhcCChhhHHH
Q 009036          453 SCVSVLYALSHGGLRFKGL  471 (546)
Q Consensus       453 ~Av~~L~~L~~~~~~~~~~  471 (546)
                      .++..|..-..++.+.++.
T Consensus       435 ~aa~~lA~~la~d~~l~~~  453 (2710)
T PRK14707        435 QAVSALAGRLAHDTELCKA  453 (2710)
T ss_pred             HHHHHHHHHHhccHHHHhh
Confidence            5555554443344344443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.46  E-value=73  Score=38.95  Aligned_cols=261  Identities=16%  Similarity=0.117  Sum_probs=131.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH---HHHHhcCChHH
Q 009036          238 SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK---MLIVRSGLVPP  314 (546)
Q Consensus       238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk---~~i~~~g~l~~  314 (546)
                      +++..+|..-......|..++..... -.-...+.-|+.-|.+....+++.++.+|..|.....+-   +.+-  .....
T Consensus      1009 DP~~~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~ 1085 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVVD-EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEA 1085 (1702)
T ss_pred             CCcHHHHHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHH
Confidence            45666666555555445543221111 111345556666677888999999999999988754332   2221  23333


Q ss_pred             HHHHHccCCHHHHH---HHHHHHhhcccc----cc---hhhHHhhcCChHHHH--HhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          315 IVDVLMAGSAEAQE---HACGAIFSLALD----DQ---NKTAIGVLGALPPLL--HLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       315 Lv~lL~~~~~~~~~---~Aa~~L~~Ls~~----~~---~k~~i~~~g~l~~Lv--~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      +.++..+-...+|+   .++.+|..|+.-    .+   .++.+  ..++|.|+  .++ +.-.++++.++.+|..|+...
T Consensus      1086 ~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1086 AFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhc
Confidence            44444333344444   445555554321    11   12221  23455554  223 456789999999999998754


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch-------------HHHHHHHHHHH-hhCCc---ccHHHHHh-------CCcHHHHHH
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH-------------MTGRVLLILGN-LASCS---DGRVAVLD-------SGGVECLVG  438 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~-------------~~e~al~~L~n-La~~~---e~r~~i~~-------~g~i~~Lv~  438 (546)
                      .-.-+-.-...|+.|++....-+             ....|+..+.. .+...   +.....++       ...+|.+.+
T Consensus      1163 g~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~e 1242 (1702)
T KOG0915|consen 1163 GKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTE 1242 (1702)
T ss_pred             hhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            43222233356777877776421             11122222221 11111   11111111       236677777


Q ss_pred             HHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          439 MLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       439 lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      +++.+  ..-..+-.++.++..|... ..+.....  ...+..++..+.+-++.+++.-+.+.-.|.+..-
T Consensus      1243 l~R~s--Vgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1243 LVRGS--VGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             HHhcc--CCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence            77775  2233344444555444431 11111111  1134555556666677777776666666665543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.15  E-value=9.2  Score=43.48  Aligned_cols=174  Identities=13%  Similarity=0.061  Sum_probs=102.9

Q ss_pred             HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 009036          318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNAL  397 (546)
Q Consensus       318 lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~L  397 (546)
                      .+.+.-+.+|.++...|..+....+.+..+...+++...++.|++++.-+--+|+..+..||..       .....++.|
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL  807 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL  807 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence            3445556788899999999988777777777789999999999999888878888877777652       222355666


Q ss_pred             HH-HHhCc-----hHHHHHHHHHHHhhCCcccHHHHHh---CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh-h
Q 009036          398 LG-MVNSG-----HMTGRVLLILGNLASCSDGRVAVLD---SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL-R  467 (546)
Q Consensus       398 v~-lL~~~-----~~~e~al~~L~nLa~~~e~r~~i~~---~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~-~  467 (546)
                      .+ .....     +.+-.+=.++.++..   .+-.++.   +-.+...+..+++   .+..-+..++++|..+|.... .
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~q---a~Gel~~~y~~~Li~tfl~gvre---pd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQ---ALGELVFKYKAVLINTFLSGVRE---PDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHH---HhccHHHHHHHHHHHHHHHhcCC---chHHHHHhHHHHHHHHHHHHhhh
Confidence            65 33221     111111122333221   0011110   1223344444443   345568888888888887321 2


Q ss_pred             hHHHHHHCCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 009036          468 FKGLAAAAGMAEVLMRMER-VGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       468 ~~~~~~~~g~v~~L~~ll~-~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ....+.+  ++..++.+.+ +|+.-+|+.|..+|..+-..
T Consensus       882 vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  882 VSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             hhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            2222222  4455555533 56788888888888777653

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=82.03  E-value=0.58  Score=51.76  Aligned_cols=65  Identities=11%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             CceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTVIPNLALKSTILNW  108 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~  108 (546)
                      .++.||||.....+|+.+.|-|.||+.|+...|..  +..-||.|..........--..-.+++++.
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES   86 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence            56779999999999999999999999999885543  334788887544333333334456666655

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.00  E-value=11  Score=31.35  Aligned_cols=94  Identities=14%  Similarity=-0.016  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHc
Q 009036          242 HEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLM  320 (546)
Q Consensus       242 ~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~  320 (546)
                      ++|..|+..|..=..++-..-..++ +..++..|+.-...+....++.++..|..+..++.....+.+-|++..|.++=.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            4566777766543333222223333 345566666655666667888999999999999999999999999988666655


Q ss_pred             cCCHHHHHHHHHHHh
Q 009036          321 AGSAEAQEHACGAIF  335 (546)
Q Consensus       321 ~~~~~~~~~Aa~~L~  335 (546)
                      .-++..+...-.++.
T Consensus        82 ~~~~~~~~~id~il~   96 (98)
T PF14726_consen   82 NVEPNLQAEIDEILD   96 (98)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            556666655555543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=81.72  E-value=60  Score=34.72  Aligned_cols=183  Identities=13%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             hhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhh-hHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036          227 EQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREET-RVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~-r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      ..+..+++.++.. ..+.+..|+..|..+..++... +.+.. .-++..+++.|.. .+...+..|+.+|..++.+...+
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            3455666677555 5678889999898887766322 11111 1345667777766 68888899999999988653322


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHH-HhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGA-IFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~-L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      -.=-..-+|..+++.-.+...++...|... +..++.....+       .|..+..++...+...-..++..+-.|+..-
T Consensus       365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l  437 (516)
T KOG2956|consen  365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL  437 (516)
T ss_pred             hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence            110001133444444445556665555543 34444433322       2233334444443333234444444444311


Q ss_pred             hhHHHHHhc--CcHHHHHHHHhCch--HHHHHHHHHHHhh
Q 009036          383 SNRTKLVKL--GSVNALLGMVNSGH--MTGRVLLILGNLA  418 (546)
Q Consensus       383 ~n~~~iv~~--Gav~~Lv~lL~~~~--~~e~al~~L~nLa  418 (546)
                       -++.+...  ...|.+++...+.+  ++..|+.+|..+.
T Consensus       438 -~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  438 -SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             -CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence             12222221  46677777766543  6777776665543

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.67  E-value=8.2  Score=34.46  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..+.++|+++++.++..|+..|-.+.+.+ ......+.+.+++.-|++++..      .+..++..++..|...+.
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999875 4567788889999999999853      478899999888877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=81.60  E-value=7.3  Score=30.62  Aligned_cols=65  Identities=20%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036          407 TGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA  474 (546)
Q Consensus       407 ~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~  474 (546)
                      .+.|+.++.++++.+.|...+.+.+.++.++++....  ....++--|..+|.-++... +..+++.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s--~v~siRGT~fy~Lglis~T~-~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENS--PVLSIRGTCFYVLGLISSTE-EGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhC--CccchHHHHHHHHHHHhCCH-HHHHHHHH
Confidence            4569999999999999999888899999999999886  34667788888888777644 33444433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=81.29  E-value=36  Score=39.03  Aligned_cols=169  Identities=17%  Similarity=0.115  Sum_probs=106.6

Q ss_pred             HHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036          231 YFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS  309 (546)
Q Consensus       231 ~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~  309 (546)
                      .+...| +...+.++..+...+.++++.-.   ......+.++.+..+...+...+++.|...+.++...-....- ...
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~  315 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVK  315 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhh
Confidence            344444 55677888888888888887533   2666778899999999888888898888887766542111101 123


Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc--CchhHHH
Q 009036          310 GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL--VKSNRTK  387 (546)
Q Consensus       310 g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~--~~~n~~~  387 (546)
                      .+.+.++.....++..++...+.....|...=..  .......+++...++++...+++..++.-...++.  +.+....
T Consensus       316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~  393 (759)
T KOG0211|consen  316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN  393 (759)
T ss_pred             hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence            4678888888888888887777776666432111  22333456677777776555555555544444443  3334445


Q ss_pred             HHhcCcHHHHHHHHhCch
Q 009036          388 LVKLGSVNALLGMVNSGH  405 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~~  405 (546)
                      +...-.++.+..+..+..
T Consensus       394 i~~~~ilp~~~~lv~d~~  411 (759)
T KOG0211|consen  394 IPDSSILPEVQVLVLDNA  411 (759)
T ss_pred             cchhhhhHHHHHHHhccc
Confidence            555555777777776654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.17  E-value=92  Score=35.49  Aligned_cols=68  Identities=19%  Similarity=0.128  Sum_probs=46.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD  341 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~  341 (546)
                      +.++|-..|.+....+.-+|+.++.+|...  +-..+.  -.+..|--+|.+...-+|-.|.++|..++...
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~  313 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH  313 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence            344455556667778888888888876532  111111  15666666778888999999999999987754

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=80.95  E-value=71  Score=33.37  Aligned_cols=230  Identities=20%  Similarity=0.175  Sum_probs=120.1

Q ss_pred             hHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhh-cccccchhhH
Q 009036          270 LLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFS-LALDDQNKTA  346 (546)
Q Consensus       270 ~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~-Ls~~~~~k~~  346 (546)
                      -|..+++-+.+ ....++..++.-|..-+.++..+..+...|.++.+++.+.. ++..+...++.++.. |+.+...-..
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            35666666653 35567777777788878889999999999999999999954 444355555555544 4444444444


Q ss_pred             HhhcCChHHHHHhhccCCH-HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC-----------chHHHHHHHHH
Q 009036          347 IGVLGALPPLLHLLKSDSE-RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS-----------GHMTGRVLLIL  414 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~-----------~~~~e~al~~L  414 (546)
                      +.....+..++.++.-+.. ......-      .....+-.++.+ +.+..+-+++..           .+.+-.++.+|
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~l  174 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLAL  174 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHH
Confidence            4445566666777771100 0000000      000011111111 112212222210           11344456666


Q ss_pred             HHhhC------------Ccc---cHHHHHhCCcHHHHHHHHcc----CC----C-----CCHHHHHHHHHHHHHHhcCCh
Q 009036          415 GNLAS------------CSD---GRVAVLDSGGVECLVGMLRK----GT----E-----LSESTQESCVSVLYALSHGGL  466 (546)
Q Consensus       415 ~nLa~------------~~e---~r~~i~~~g~i~~Lv~lL~~----~~----~-----~s~~~~e~Av~~L~~L~~~~~  466 (546)
                      ..++.            ...   =++.+.+.|++..|+.++..    ..    .     .+-..-+.++.+|-+.+..+.
T Consensus       175 e~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~  254 (361)
T PF07814_consen  175 ESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE  254 (361)
T ss_pred             HHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence            66641            111   26667778899999999862    10    0     012244678888888776544


Q ss_pred             hhHHHHH--HCCc-HHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          467 RFKGLAA--AAGM-AEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       467 ~~~~~~~--~~g~-v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ..+....  ..+. +..+..++....+.+.+.-..+|+.+-.-
T Consensus       255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNl  297 (361)
T PF07814_consen  255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNL  297 (361)
T ss_pred             cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeC
Confidence            4444222  2223 34444445555555555444555555443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=80.83  E-value=3.1  Score=44.11  Aligned_cols=176  Identities=14%  Similarity=0.062  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhhcCCchHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc--c---c---hhhHHhhcCChHH
Q 009036          285 VQVNAVAALVNLSLEKINKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD--D---Q---NKTAIGVLGALPP  355 (546)
Q Consensus       285 v~~~A~~~L~nLs~~~~nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~---~---~k~~i~~~g~l~~  355 (546)
                      ++..|..++..+..++..+... .-......+...|.+..-..|+.+++++.+++..  +   .   ....+. .-.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence            4456667777666776544332 2334566667777777778888999999887532  1   1   111111 112233


Q ss_pred             HHHhhc---cCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHHhC-c--hHHHHHHHHHHHhhCCcccHH
Q 009036          356 LLHLLK---SDSERTQHDSALALYHLSLVKS----NRTKLVKLGSVNALLGMVNS-G--HMTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       356 Lv~lL~---~~~~~~~~~A~~aL~~Ls~~~~----n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al~~L~nLa~~~e~r~  425 (546)
                      ++..-.   .++.+++.+|..+|.|+...-.    ........|.+..++....- +  .++-+++.++.||-+++.-.-
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            332221   2467888999999999876321    11111222333333322211 1  278899999999998765322


Q ss_pred             HHHh-CC-cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          426 AVLD-SG-GVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       426 ~i~~-~g-~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      +-.. ++ +.+.|..++...  .+-+++.+|+++|.....
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~--~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSC--KNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHh--ccceEeehhhhhhcCCCC
Confidence            2222 23 456777777765  467888999999876654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=80.77  E-value=21  Score=40.74  Aligned_cols=89  Identities=20%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             HHHHhhc-CchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCcHH--HHHHHHccCCCCC
Q 009036          374 ALYHLSL-VKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGGVE--CLVGMLRKGTELS  447 (546)
Q Consensus       374 aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~--~Lv~lL~~~~~~s  447 (546)
                      +|+++.. +++++..+++.|++..+.+.+..   .+....++++|.|++...+.+..+.-...+.  .+-.++...  .+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w--~~  571 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW--DS  571 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--ch
Confidence            7888877 67899999999999999999974   4588899999999998776665554322222  222234442  33


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 009036          448 ESTQESCVSVLYALSHG  464 (546)
Q Consensus       448 ~~~~e~Av~~L~~L~~~  464 (546)
                      .+...+|+++|+.+..+
T Consensus       572 ~ersY~~~siLa~ll~~  588 (699)
T KOG3665|consen  572 IERSYNAASILALLLSD  588 (699)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            46678888888888664

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=80.47  E-value=1.3  Score=44.13  Aligned_cols=43  Identities=28%  Similarity=0.484  Sum_probs=34.6

Q ss_pred             CceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCC--CCCCC
Q 009036           44 GEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFT--PTLVD   86 (546)
Q Consensus        44 ~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~--~cp~~   86 (546)
                      .-|.||+..+.-.|   ||.++|||..-+.++.+--+.|.-  .||-|
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC  382 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC  382 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence            55899999998776   999999999999999776555532  56666

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.05  E-value=1.5  Score=44.34  Aligned_cols=63  Identities=21%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             eeCcccccccC------CCeecCCCccccHHHHHHHHhcCCCCCCCCCCCC--C---CCCCcccHHHHHHHHHH
Q 009036           46 FLCPVSGSLMA------DPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTP--D---FSTVIPNLALKSTILNW  108 (546)
Q Consensus        46 ~~CpI~~~~m~------dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~--~---~~~l~pn~~l~~~i~~~  108 (546)
                      +.|-||.+-++      -|-++.||||+|..|+.+-+..+.--||.|+.+.  .   ...|..|+.+-+.|+..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            34777766654      4778889999999999876655555678888772  2   34678888888888876

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=80.03  E-value=14  Score=33.84  Aligned_cols=108  Identities=16%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccC-CHHHHHHHHHHHHHhhc----Cch
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSD-SERTQHDSALALYHLSL----VKS  383 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~----~~~  383 (546)
                      .+..+..+|++.+++.|-.++.++..++..... +.+.+  ..-+..|+.+|+.. ...+++.++.+|..|..    .++
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            456677888888899898888888877665433 33322  34678888999874 56677777777777654    334


Q ss_pred             hHHHHHhc---CcHHHHHHHHhCchHHHHHHHHHHHhhC
Q 009036          384 NRTKLVKL---GSVNALLGMVNSGHMTGRVLLILGNLAS  419 (546)
Q Consensus       384 n~~~iv~~---Gav~~Lv~lL~~~~~~e~al~~L~nLa~  419 (546)
                      ...++...   +.+..++.++.+....+.++.+|..|-.
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP  143 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            33343332   5566666666654566667777666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	546
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		1e-05

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 39  TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98
           + E P  F CP+S  LM DPV+VS+G T+ER+        G         T   + + PN
Sbjct: 2   SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 99  LALKSTILNWCHKQSL 114
             LKS I  WC    +
Sbjct: 62  YVLKSLIALWCESNGI 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	546
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-31
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-30
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-32
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-24
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-24
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-35
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-34
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-30
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-21
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-27
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-27
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-24
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-19
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-18
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	7e-27
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-26
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-11
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-25
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-25
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-13
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	6e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-15
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	5e-15
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	7e-15
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	1e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-04
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	2e-06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	4e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  157 bits (399), Expect = 3e-42
 Identities = 46/274 (16%), Positives = 105/274 (38%), Gaps = 18/274 (6%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSL----CTPRLLLALRSLIISRYTNVQV 287
             + L       V +A + + +L++        +        ++  +++   +       
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETAR 78

Query: 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTA 346
                L NLS  +   + I +SG +P +V +L +       +A   + +L L  +  K A
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGH 405
           + + G L  ++ LL   + +    +   L  L+     ++  ++  G   AL+ ++ +  
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 406 MTGR---VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462
                     +L  L+ CS  + A++++GG++ L   L      S+   ++C+  L  LS
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLS 255

Query: 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
                        G+   L+++      +V   A
Sbjct: 256 DAA---TKQEGMEGLLGTLVQLLGSDDINVVTCA 286

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  136 bits (345), Expect = 7e-35
 Identities = 53/273 (19%), Positives = 104/273 (38%), Gaps = 11/273 (4%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            V+ L SP    +  A+ +L  L   +E  ++++     L  + +L+             
Sbjct: 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 292 ALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEA-QEHACGAIFSLALDDQNKTAIGV 349
            L  L+   + +K++I+ SG    +V+++   + E         +  L++   NK AI  
Sbjct: 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGR 409
            G +  L   L   S+R   +    L +LS   +   +    G +  L+ ++ S  +   
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVV 283

Query: 410 --VLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466
                IL NL   +   ++ V   GG+E LV  + +  +  E   E  +  L  L+    
Sbjct: 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRHQ 342

Query: 467 RFKGLAAA---AGMAEVLMRMERVGSEHVKEKA 496
             +    A        V++++    S     KA
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  127 bits (322), Expect = 8e-32
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 9/230 (3%)

Query: 273 ALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIVDVLMAGS-AEAQEHA 330
            L  L+      V   A   +  LS ++ ++  I+RS  +V  IV  +   +  E     
Sbjct: 21  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 331 CGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV- 389
            G + +L+   +   AI   G +P L+ +L S  +     +   L++L L +      V 
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 140

Query: 390 KLGSVNALLGMVNSGHMTGR--VLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTEL 446
             G +  ++ ++N  ++         L  LA    + ++ +L SGG + LV ++R  T  
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 198

Query: 447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
            E    +   VL  LS      K     AG  + L       S+ + +  
Sbjct: 199 YEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  127 bits (320), Expect = 2e-31
 Identities = 50/296 (16%), Positives = 102/296 (34%), Gaps = 21/296 (7%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT----PRLLLALRSLIISRYTNVQV 287
            V  L    V  +      L+ L    +E+++ +        L+  +R+     Y  +  
Sbjct: 148 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLW 204

Query: 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347
                L  LS+   NK  IV +G +  +   L   S    ++    + +L+  D      
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 262

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHM 406
           G+ G L  L+ LL SD       +A  L +L+     N+  + ++G + AL+  V     
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 407 TGRV----LLILGNLASCSD----GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458
              +    +  L +L S        + AV    G+  +V +L   +       ++ V ++
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH--WPLIKATVGLI 380

Query: 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGV 514
             L+             G    L+++     +  + +        +       E +
Sbjct: 381 RNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  120 bits (302), Expect = 3e-29
 Identities = 56/278 (20%), Positives = 97/278 (34%), Gaps = 28/278 (10%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTN--VQVNAV 290
           VQ L S  ++ V  A   L  LT +  + ++ +C    + AL   ++       +   A+
Sbjct: 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331

Query: 291 AALVNLSL----EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS-LALDDQNKT 345
            AL +L+      ++ +  +     +P +V +L   S      A   +   LAL   N  
Sbjct: 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 391

Query: 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH 405
            +   GA+P L+ LL    + TQ  +++       V+  R + +  G   AL        
Sbjct: 392 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL-------- 443

Query: 406 MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
                      LA     R+ +     +   V +L       E+ Q     VL  L+   
Sbjct: 444 ---------HILARDVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDK 491

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503
                   A G    L  +    +E V   A  +L  M
Sbjct: 492 -EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  115 bits (289), Expect = 2e-27
 Identities = 43/218 (19%), Positives = 96/218 (44%), Gaps = 11/218 (5%)

Query: 292 ALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-L 350
           A+VNL   + +    + +  +P +  +L          A   +  L+  + ++ AI    
Sbjct: 1   AVVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 351 GALPPLLHLLKSDSE-RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGR 409
             +  ++  +++ ++  T   +A  L++LS  +     + K G + AL+ M+ S   +  
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 410 --VLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466
              +  L NL    +G ++AV  +GG++ +V +L K    +          L  L++G  
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQ 175

Query: 467 RFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELM 503
             K +  A+G  + L+ + R  + E +     R+L+++
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 99.5 bits (248), Expect = 3e-22
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 28/212 (13%)

Query: 235 KLKSPQVHEVEEALISLRKLT---RSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
                +    E A+ +LR LT   +  E  + ++     L  +  L+        + A  
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377

Query: 292 ALV-NLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQ----------------------E 328
            L+ NL+L   N   +   G +P +V +L+    + Q                      E
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437

Query: 329 HACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKL 388
              GA+  LA D  N+  I  L  +P  + LL S  E  Q  +A  L  L+  K     +
Sbjct: 438 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497

Query: 389 VKLGSVNALLGMVNSGHMTGR--VLLILGNLA 418
              G+   L  +++S +         +L  ++
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  154 bits (390), Expect = 2e-40
 Identities = 48/271 (17%), Positives = 109/271 (40%), Gaps = 12/271 (4%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAV 290
             + L       V +A + + +L++        + +P+++ A+   + +           
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

Query: 291 AALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGV 349
             L NLS  +   + I +SG +P +V +L +       +A   + +L L  +  K A+ +
Sbjct: 79  GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHMTG 408
            G L  ++ LL   + +    +   L  L+   + ++  ++  G   AL+ ++ +     
Sbjct: 139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 198

Query: 409 R---VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
                  +L  L+ CS  + A++++GG++ L   L      S+   ++C+  L  LS   
Sbjct: 199 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA 255

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
                     G+   L+++      +V   A
Sbjct: 256 ---TKQEGMEGLLGTLVQLLGSDDINVVTCA 283

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  140 bits (353), Expect = 1e-35
 Identities = 53/273 (19%), Positives = 104/273 (38%), Gaps = 11/273 (4%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            V+ L SP    +  A+ +L  L   +E  ++++     L  + +L+             
Sbjct: 103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162

Query: 292 ALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEA-QEHACGAIFSLALDDQNKTAIGV 349
            L  L+   + +K++I+ SG    +V+++   + E         +  L++   NK AI  
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGR 409
            G +  L   L   S+R   +    L +LS   +   +    G +  L+ ++ S  +   
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVV 280

Query: 410 --VLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466
                IL NL   +   ++ V   GG+E LV  + +  +  E   E  +  L  L+    
Sbjct: 281 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRHQ 339

Query: 467 RFKGLAAA---AGMAEVLMRMERVGSEHVKEKA 496
             +    A        V++++    S     KA
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  140 bits (353), Expect = 2e-35
 Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 14/289 (4%)

Query: 232 FVQKLKSPQVHEV-EEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAV 290
            V+ +++    E       +L  L+  RE   +++     + AL  ++ S   +V   A+
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119

Query: 291 AALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIG 348
             L NL L ++  KM +  +G +  +V +L   + +        +  LA  +Q +K  I 
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179

Query: 349 VLGALPPLLHLLKSDSERTQHDSAL-ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH-- 405
             G    L++++++ +      +    L  LS+  SN+  +V+ G + AL   +      
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239

Query: 406 MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
           +    L  L NL+  +  +      G +  LV +L        +       +L  L+   
Sbjct: 240 LVQNCLWTLRNLSDAATKQEG--MEGLLGTLVQLLGSD---DINVVTCAAGILSNLTCNN 294

Query: 466 LRFKGLAAAAGMAEVLMRM--ERVGSEHVKEKAKRMLELMKGRAEEEEE 512
            + K +    G  E L+R        E + E A   L  +  R +E E 
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  128 bits (322), Expect = 1e-31
 Identities = 50/296 (16%), Positives = 102/296 (34%), Gaps = 21/296 (7%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSL----CTPRLLLALRSLIISRYTNVQV 287
            V  L    V  +      L+ L    +E+++ +        L+  +R+     Y  +  
Sbjct: 145 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLW 201

Query: 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347
                L  LS+   NK  IV +G +  +   L   S    ++    + +L+  D      
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 259

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHM 406
           G+ G L  L+ LL SD       +A  L +L+     N+  + ++G + AL+  V     
Sbjct: 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319

Query: 407 TGRV----LLILGNLASCSD----GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458
              +    +  L +L S        + AV    G+  +V +L   +       ++ V ++
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH--WPLIKATVGLI 377

Query: 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGV 514
             L+             G    L+++     +  + +        +       E +
Sbjct: 378 RNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  124 bits (313), Expect = 2e-30
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 9/230 (3%)

Query: 273 ALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIVDVLMAGS-AEAQEHA 330
            L  L+      V   A   +  LS ++ ++  I+RS  +V  IV  +   +  E     
Sbjct: 18  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 77

Query: 331 CGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV- 389
            G + +L+   +   AI   G +P L+ +L S  +     +   L++L L +      V 
Sbjct: 78  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137

Query: 390 KLGSVNALLGMVNSGHMTGR--VLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTEL 446
             G +  ++ ++N  ++         L  LA    + ++ +L SGG + LV ++R  T  
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-- 195

Query: 447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
            E    +   VL  LS      K     AG  + L       S+ + +  
Sbjct: 196 YEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  122 bits (308), Expect = 1e-29
 Identities = 60/304 (19%), Positives = 110/304 (36%), Gaps = 30/304 (9%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTN--VQVNAV 290
           VQ L S  ++ V  A   L  LT +  + ++ +C    + AL   ++       +   A+
Sbjct: 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328

Query: 291 AALVNLSL----EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHA-CGAIFSLALDDQNKT 345
            AL +L+      ++ +  +     +P +V +L   S      A  G I +LAL   N  
Sbjct: 329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388

Query: 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH 405
            +   GA+P L+ LL    + TQ  +++       V+  R + +  G   AL        
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL-------- 440

Query: 406 MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
                      LA     R+ +     +   V +L       E+ Q     VL  L+   
Sbjct: 441 ---------HILARDVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDK 488

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE-LMKGRAEEEEEGVDWDELLDSGL 524
                   A G    L  +    +E V   A  +L  + + + ++ ++ +   EL  S  
Sbjct: 489 -EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS-VELTSSLF 546

Query: 525 VSRS 528
            +  
Sbjct: 547 RTEP 550

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (265), Expect = 2e-24
 Identities = 39/201 (19%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDS 364
            + +  +P +  +L          A   +  L+  + ++ AI      +  ++  +++ +
Sbjct: 10  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 365 E-RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGR--VLLILGNLASCS 421
           +  T   +A  L++LS  +     + K G + AL+ M+ S   +     +  L NL    
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 422 DG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEV 480
           +G ++AV  +GG++ +V +L K    +          L  L++G    K +  A+G  + 
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186

Query: 481 LMRMERVGS-EHVKEKAKRML 500
           L+ + R  + E +     R+L
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  101 bits (254), Expect = 6e-23
 Identities = 48/252 (19%), Positives = 84/252 (33%), Gaps = 30/252 (11%)

Query: 235 KLKSPQVHEVEEALISLRKLT---RSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
                +    E A+ +LR LT   +  E  + ++     L  +  L+        + A  
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374

Query: 292 ALV-NLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQ----------------------E 328
            L+ NL+L   N   +   G +P +V +L+    + Q                      E
Sbjct: 375 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 434

Query: 329 HACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKL 388
              GA+  LA D  N+  I  L  +P  + LL S  E  Q  +A  L  L+  K     +
Sbjct: 435 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 494

Query: 389 VKLGSVNALLGMVNSGHMTGR--VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTEL 446
              G+   L  +++S +         +L  +    D          VE    + R     
Sbjct: 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRM--SEDKPQDYKKRLSVELTSSLFRTEPMA 552

Query: 447 SESTQESCVSVL 458
              T +  + + 
Sbjct: 553 WNETADLGLDIG 564

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  135 bits (341), Expect = 2e-36
 Identities = 52/236 (22%), Positives = 109/236 (46%), Gaps = 9/236 (3%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
            Q+L S  + E   A     ++     E   ++     L AL  L+ S    +   A+ A
Sbjct: 18  TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77

Query: 293 LVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVL 350
           L N++         ++ +G +P +V +L + + +  + A  A+ ++A   ++   A+   
Sbjct: 78  LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137

Query: 351 GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNSGH--MT 407
           GALP L+ LL S +E+   ++  AL +++   + + + ++  G++ AL+ +++S +  + 
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 408 GRVLLILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462
              L  L N+AS   + + AV ++G +E L  +       +E  Q+     L  L 
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  123 bits (310), Expect = 4e-32
 Identities = 52/237 (21%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 271 LLALRSLIISRYTNVQVNAVAALVNLSLEKI-NKMLIVRSGLVPPIVDVLMAGSAEAQEH 329
           L  +   + S     Q++A      +  +       ++ +G +P +V +L + + +  + 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 330 ACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTK 387
           A  A+ ++A   ++   A+   GALP L+ LL S +E+   ++  AL +++         
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 388 LVKLGSVNALLGMVNSGHMTGR--VLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGT 444
           ++  G++ AL+ +++S +       L  L N+AS  ++   AV+D+G +  LV +L    
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP- 192

Query: 445 ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 501
             +E   +  +  L  ++ GG   K     AG  E L +++   +E ++++A+  LE
Sbjct: 193 --NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  101 bits (253), Expect = 2e-24
 Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 8/200 (4%)

Query: 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLL 360
           +         +P +   L +   + Q  A      +  D ++   A+   GALP L+ LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 361 KSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVNSGHMTGR--VLLILGNL 417
            S +E+   ++  AL +++   + + + V   G++ AL+ +++S +       L  L N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 418 ASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG 476
           AS  +    AV+D+G +  LV +L       E   +  +  L  ++ GG         AG
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVIDAG 180

Query: 477 MAEVLMRMERVGSEHVKEKA 496
               L+++    +E + ++A
Sbjct: 181 ALPALVQLLSSPNEQILQEA 200

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 99.7 bits (249), Expect = 9e-24
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 5/193 (2%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            VQ L SP    ++EAL +L  +     E   ++     L AL  L+ S    +   A+ 
Sbjct: 59  LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118

Query: 292 ALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGV 349
           AL N++         ++ +G +P +V +L + + +  + A  A+ ++A   ++   A+  
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHMTG 408
            GALP L+ LL S +E+   ++  AL +++      +  + + G++  L  + +  +   
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

Query: 409 R--VLLILGNLAS 419
           +      L  L S
Sbjct: 239 QKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 90.0 bits (224), Expect = 2e-20
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
              VQ L SP    ++EAL +L  +     E   ++     L AL  L+ S    +   A
Sbjct: 99  PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

Query: 290 VAALVNLSLEKI-NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA-LDDQNKTAI 347
           + AL N++         ++ +G +P +V +L + + +  + A  A+ ++A   ++ K A+
Sbjct: 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLS 379
              GAL  L  L   ++E+ Q ++  AL  L 
Sbjct: 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  135 bits (342), Expect = 1e-35
 Identities = 56/310 (18%), Positives = 119/310 (38%), Gaps = 33/310 (10%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT----PRLLLALRS-------LIISR 281
              + +P  H++  A+  L KL+   EE R ++        +   L+             
Sbjct: 38  KNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 96

Query: 282 YTNVQVNAVAALVNLSLEKI-NKMLIVRS-GLVPPIVDVLMAGSAEAQEHACGAIFSLAL 339
              ++  A  AL NL+   + NK  +    G +  +V  L + S + Q+     + +L+ 
Sbjct: 97  SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 156

Query: 340 --DDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLS-LVKSNRTKLVKL-GSV 394
             D  +K  +  +G++  L+    +   E T      AL++LS     N+  +  + G++
Sbjct: 157 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 216

Query: 395 NALLGMVNSGHMTGRVLLI------LGNL----ASCSDGRVAVLDSGGVECLVGMLRKGT 444
             L+G +     T  + +I      L N+    A+  D R  + ++  ++ L+  L+   
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH- 275

Query: 445 ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE-LM 503
             S +   +    L+ LS    + +      G   +L  +     + +   +   L  LM
Sbjct: 276 --SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

Query: 504 KGRAEEEEEG 513
             R  + ++ 
Sbjct: 334 ANRPAKYKDA 343

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  111 bits (280), Expect = 3e-27
 Identities = 50/248 (20%), Positives = 94/248 (37%), Gaps = 24/248 (9%)

Query: 273 ALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL-----------MA 321
             ++ + +   +    AV  L+ LS ++ ++  +   G +  I ++L             
Sbjct: 36  QDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 95

Query: 322 GSAEAQEHACGAIFSLAL-DDQNKTAI-GVLGALPPLLHLLKSDSERTQHDSALALYHLS 379
            S   + +A  A+ +L   D  NK  +  + G +  L+  LKS+SE  Q   A  L +LS
Sbjct: 96  YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155

Query: 380 LVKS--NRTKLVKLGSVNALLGMVNSGHMTG---RVLLILGNLASCSDG--RVAVLDSGG 432
                 ++  L ++GSV AL+              VL  L NL++             G 
Sbjct: 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 215

Query: 433 VECLVGML-RKGTELSESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRMERVG 488
           +  LVG L  +    + +  ES   +L  +S         + +       + L++  +  
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275

Query: 489 SEHVKEKA 496
           S  +   A
Sbjct: 276 SLTIVSNA 283

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 96.1 bits (239), Expect = 8e-22
 Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 24/237 (10%)

Query: 299 EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLH 358
           E   +        +    + + A        A   +  L+ D++++ A+  LG L  +  
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 359 LLKSDSE-----------RTQHDSALALYHLSLVKS-NRTKLVKL-GSVNALLGMVNSGH 405
           LL+ D E             +  + +AL +L+     N+  L  + G + AL+  + S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 406 MTGR--VLLILGNLASCSDG--RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL 461
              +  +  +L NL+  +D   +  + + G V+ L+    +     EST +S +S L+ L
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNL 198

Query: 462 SHGGLRFKGLAAAAG-----MAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEG 513
           S      K    A       +   L    +  +  + E    +L  +       E+ 
Sbjct: 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 234 QKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAAL 293
           Q      +      L ++  L  + E+ R  L     L  L   + S    +  NA   L
Sbjct: 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287

Query: 294 VNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK----TAIG 348
            NLS     ++  +   G V  + +++ +        +  A+ +L  +   K      + 
Sbjct: 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMS 347

Query: 349 VLGALP 354
              +LP
Sbjct: 348 PGSSLP 353

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  133 bits (336), Expect = 4e-34
 Identities = 56/302 (18%), Positives = 117/302 (38%), Gaps = 32/302 (10%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYT------ 283
           D     + +P  H++  A+  L KL+   EE R ++     L A+  L+           
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209

Query: 284 -----NVQVNAVAALVNLSLEKI-NKMLIVRS-GLVPPIVDVLMAGSAEAQEHACGAIFS 336
                 ++  A  AL NL+   + NK  +    G +  +V  L + S + Q+     + +
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269

Query: 337 LAL--DDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLS-LVKSNRTKLVKL- 391
           L+   D  +K  +  +G++  L+    +   E T      AL++LS     N+  +  + 
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329

Query: 392 GSVNALLGMVNSGHMTGRVLL------ILGNL----ASCSDGRVAVLDSGGVECLVGMLR 441
           G++  L+G +     T  + +      IL N+    A+  D R  + ++  ++ L+  L+
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 442 KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 501
                S +   +    L+ LS    + +      G   +L  +     + +   +   L 
Sbjct: 390 SH---SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446

Query: 502 LM 503
            +
Sbjct: 447 NL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 99.7 bits (248), Expect = 1e-22
 Identities = 57/347 (16%), Positives = 109/347 (31%), Gaps = 60/347 (17%)

Query: 203 SCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETR 262
               S    +S L  +     +        +  L +    ++   L+++     S    R
Sbjct: 15  VPRGSHMRLTSHLGTKVEMVYS-------LLSMLGTHDKDDMSRTLLAMSSSQDSCISMR 67

Query: 263 VSLCTPRLLLALRS--------LIISRYTNVQVNAVAALVNLSL---------------- 298
            S C P L+  L                   +  A AAL N+                  
Sbjct: 68  QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127

Query: 299 ---------EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV 349
                    E   +        +    + + A        A   +  L+ D++++ A+  
Sbjct: 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE 187

Query: 350 LGALPPLLHLLKSDSE-----------RTQHDSALALYHLSLVKSNRTKLV--KLGSVNA 396
           LG L  +  LL+ D E             +  + +AL +L+         +    G + A
Sbjct: 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247

Query: 397 LLGMVNSGHMTGR--VLLILGNLASCSDG--RVAVLDSGGVECLVGMLRKGTELSESTQE 452
           L+  + S     +  +  +L NL+  +D   +  + + G V+ L+    +     EST +
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLK 305

Query: 453 SCVSVLYALSHGGLRFKG-LAAAAGMAEVLMRMERVGSEHVKEKAKR 498
           S +S L+ LS      K  + A  G    L+      S+        
Sbjct: 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 97.3 bits (242), Expect = 7e-22
 Identities = 29/166 (17%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 233 VQKLKSPQVHEVEEALIS-LRKLTRSREETRVSLCT-----PRLLLALRSLIISRYTNVQ 286
           ++     +     ++++S L  L+    E +  +C        L+  L     +    + 
Sbjct: 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351

Query: 287 VNAVAALVNLS----LEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL-ALDD 341
            +    L N+S      + ++ ++  +  +  ++  L + S     +ACG +++L A + 
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 411

Query: 342 QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387
           +++ A+  +GA+  L +L+ S  +     SA AL +L   +  + K
Sbjct: 412 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  127 bits (321), Expect = 3e-31
 Identities = 67/351 (19%), Positives = 130/351 (37%), Gaps = 18/351 (5%)

Query: 158 PSVS--FNHAVSELTRRPAYFYASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSEL 215
           PS+S   N    ++  +  Y +    ++S  +            TR     ++    +  
Sbjct: 44  PSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLD 103

Query: 216 EPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALR 275
           E   +     +      VQ+L  P    ++ A+++L       E    ++  P L     
Sbjct: 104 EGMQIPSTQFDSAHPTNVQRLAEPS-QMLKHAVVNLINYQDDAELATRAI--PELT---- 156

Query: 276 SLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS-GLVPPIVDVLMAGS-AEAQEHACGA 333
            L+      V   A   +  LS ++ ++  I+RS  +V  IV  +   +  E      G 
Sbjct: 157 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGT 216

Query: 334 IFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV-KLG 392
           + +L+   +   AI   G +P L+++L S  +     +   L++L L +      V   G
Sbjct: 217 LHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276

Query: 393 SVNALLGMVNSGHMTGR--VLLILGNLA-SCSDGRVAVLDSGGVECLVGMLRKGTELSES 449
            +  ++ ++N  ++         L  LA    + ++ +L SGG + LV ++R  T   E 
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--EK 334

Query: 450 TQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML 500
              +   VL  LS      K     AG  + L       S+ + +     L
Sbjct: 335 LLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  123 bits (310), Expect = 7e-30
 Identities = 49/278 (17%), Positives = 99/278 (35%), Gaps = 21/278 (7%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSL----CTPRLLLALRSLIISRYTNVQV 287
            V  L    V  +      L+ L    +E+++ +        L+  +R+     Y  +  
Sbjct: 281 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLW 337

Query: 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI 347
                L  LS+   NK  IV +G +  +   L   S    ++    + +L+  D      
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQE 395

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHM 406
           G+ G L  L+ LL SD       +A  L +L+     N+  + ++G + AL+  V     
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455

Query: 407 TGRV----LLILGNLASCSDG----RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458
              +    +  L +L S        + AV    G+  +V +L   +       ++ V ++
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS--HWPLIKATVGLI 513

Query: 459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
             L+             G    L+++     +  + + 
Sbjct: 514 RNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  121 bits (304), Expect = 5e-29
 Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 30/298 (10%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTN--VQVNAV 290
           VQ L S  ++ V  A   L  LT +  + ++ +C    + AL   ++       +   A+
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464

Query: 291 AALVNLS----LEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHAC-GAIFSLALDDQNKT 345
            AL +L+      ++ +  +     +P +V +L   S      A  G I +LAL   N  
Sbjct: 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524

Query: 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH 405
            +   GA+P L+ LL    + TQ  +++       V+  R + +      AL        
Sbjct: 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL-------- 576

Query: 406 MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
                      LA     R+ +     +   V +L       E+ Q     VL  L+   
Sbjct: 577 ---------HILARDIHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDK 624

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE-LMKGRAEEEEEGVDWDELLDS 522
                   A G    L  +    +E V   A  +L  + + + ++ ++ +   EL  S
Sbjct: 625 -EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS-VELTSS 680

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  115 bits (289), Expect = 3e-27
 Identities = 56/300 (18%), Positives = 113/300 (37%), Gaps = 13/300 (4%)

Query: 206 SSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSL 265
           + S S     E   +++    E E  F Q     QV +++      R   R R       
Sbjct: 43  APSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRA-QRVRAAMFPET 101

Query: 266 CTPRLLLALRSLIISRYTNVQVNA--VAALVNLSLEKINKML--IVRSGLVPPIVDVLMA 321
               + +       +  TNVQ  A     L +  +  IN      + +  +P +  +L  
Sbjct: 102 LDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND 161

Query: 322 GSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSE-RTQHDSALALYHLS 379
                   A   +  L+  + ++ AI      +  ++  +++ ++  T   ++  L++LS
Sbjct: 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS 221

Query: 380 LVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLI--LGNLASCSDG-RVAVLDSGGVECL 436
             +     + K G + AL+ M+ S   +     I  L NL    +G ++AV  +GG++ +
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281

Query: 437 VGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
           V +L K    +          L  L++G    K +  A+G  + L+ + R  +       
Sbjct: 282 VALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 98.6 bits (245), Expect = 1e-21
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 36/236 (15%)

Query: 237 KSPQVHEVEEALISLRKLTR-------SREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
              +    E A+ +LR LT        ++   R+    P ++  L       +  +    
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP---PSHWPLIKAT 509

Query: 290 VAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHA------------------- 330
           V  + NL+L   N   +   G +P +V +L+    + Q                      
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569

Query: 331 ---CGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK 387
               GA+  LA D  N+  I  L  +P  + LL S  E  Q  +A  L  L+  K     
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 629

Query: 388 LVKLGSVNALLGMVNSGHMTGR--VLLILGNLASCSDGRVAVLDSGGVECLVGMLR 441
           +   G+   L  +++S +         +L  +    D          VE    + R
Sbjct: 630 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM--SEDKPQDYKKRLSVELTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 91.6 bits (227), Expect = 1e-19
 Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 246 EALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305
             L+ L  L R+ ++T+               +  R   +      AL  L+ +  N+++
Sbjct: 533 PRLVQL--LVRAHQDTQRRTSMGGTQQQFVEGV--RMEEIVEACTGALHILARDIHNRIV 588

Query: 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE 365
           I     +P  V +L +     Q  A G +  LA D +   AI   GA  PL  LL S +E
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 648

Query: 366 RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGR 409
                +A  L+ +S  +       K  SV     +  +  MT  
Sbjct: 649 GVATYAAAVLFRMS--EDKPQDYKKRLSVELTSSLFRTEPMTWN 690

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 3/132 (2%)

Query: 244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK 303
           VE    +L  L R     R+ +     +     L+ S   N+Q  A   L  L+ +K   
Sbjct: 569 VEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 627

Query: 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD 363
             I   G   P+ ++L + +     +A   +F ++ D        +   L     L +++
Sbjct: 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS--LFRTE 685

Query: 364 SERTQHDSALAL 375
                    L L
Sbjct: 686 PMTWNETGDLGL 697

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  112 bits (283), Expect = 8e-29
 Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 5/192 (2%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
           VQ+L SP   E++ AL  L ++     E   ++     L AL  L+ S    +   A+ A
Sbjct: 18  VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77

Query: 293 LVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVL 350
           L N++         ++ +G +P +V +L + + +  + A  A+ ++A   ++   A+   
Sbjct: 78  LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137

Query: 351 GALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MT 407
           GALP L+ LL S +E+   ++  AL +++      +  + + G++  L  + +  +  + 
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197

Query: 408 GRVLLILGNLAS 419
                 L  L S
Sbjct: 198 KEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  108 bits (271), Expect = 3e-27
 Identities = 47/207 (22%), Positives = 97/207 (46%), Gaps = 8/207 (3%)

Query: 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLL 360
           +         +P +V  L +   +  + A   +  +A   ++   A+   GALP L+ LL
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 361 KSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVNSGHMTGR--VLLILGNL 417
            S +E+   ++  AL +++   + + + V   G++ AL+ +++S +       L  L N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 418 ASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG 476
           AS   +   AV+D+G +  LV +L      +E   +  +  L  ++ GG   K     AG
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 477 MAEVLMRMERVGSEHVKEKAKRMLELM 503
             E L +++   +E ++++A+  LE +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  106 bits (268), Expect = 8e-27
 Identities = 40/196 (20%), Positives = 89/196 (45%), Gaps = 9/196 (4%)

Query: 273 ALRSLIISRYTNVQVNAVAALVNLSLEKI-NKMLIVRSGLVPPIVDVLMAGSAEAQEHAC 331
            +   + S       +A+  L  ++         ++ +G +P +V +L + + +  + A 
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 332 GAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLV 389
            A+ ++A   ++   A+   GALP L+ LL S +E+   ++  AL +++         ++
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135

Query: 390 KLGSVNALLGMVNSGHMTGR--VLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTEL 446
             G++ AL+ +++S +       L  L N+AS  ++ + AV ++G +E L  +       
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--- 192

Query: 447 SESTQESCVSVLYALS 462
           +E  Q+     L  L 
Sbjct: 193 NEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            VQ L SP    ++EAL +L  +     E   ++     L AL  L+ S    +   A+ 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 292 ALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338
           AL N++      K  +  +G +  +  +    + + Q+ A  A+  L 
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  115 bits (290), Expect = 5e-28
 Identities = 45/287 (15%), Positives = 101/287 (35%), Gaps = 11/287 (3%)

Query: 232 FVQKLKSPQVHEVE-EALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAV 290
           FV+ LK  +   ++ E+   L  +          +     +     L+ S + +VQ  AV
Sbjct: 69  FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128

Query: 291 AALVNLSLE-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIG 348
            AL N++ +  + +  ++   ++PP++ +           +A  A+ +L           
Sbjct: 129 WALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188

Query: 349 VL-GALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGHM 406
            +   L  L  LL         D+  AL +LS         ++  G    L+ ++     
Sbjct: 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY 248

Query: 407 TGR--VLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463
                 L  +GN+ +  D     +L+   ++ L+ +L       ES ++     +  ++ 
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---KESIKKEACWTISNITA 305

Query: 464 GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEE 510
           G          A +   L+ + +      +++A   +         E
Sbjct: 306 GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE 352

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  108 bits (272), Expect = 1e-25
 Identities = 51/290 (17%), Positives = 112/290 (38%), Gaps = 9/290 (3%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYT-NVQVN 288
             F++ L S      E+A+ +L  +       R  +    +L  L  L   +    +  N
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169

Query: 289 AVAALVNLSLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTA 346
           AV AL NL   K       + S  +  +  +L     +    AC A+  L+   +    A
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA 229

Query: 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVNSGH 405
           +   G    L+ LL  +  +    +  A+ ++      +T+++    ++ +LL +++S  
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK 289

Query: 406 MTGR--VLLILGNLASCSDGRV-AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462
            + +      + N+ + +  ++  V+D+     L+ +L+       + +E+  ++  A S
Sbjct: 290 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF--RTRKEAAWAITNATS 347

Query: 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEE 512
            G           G  + L  +  V    + + A   LE +    E+E +
Sbjct: 348 GGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  105 bits (264), Expect = 1e-24
 Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 19/277 (6%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLC------TPRLLLALRSLIISRYTNVQ 286
           ++ + S    +   A    RKL        +           R    +  L       +Q
Sbjct: 26  IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF---VEFLKRKENCTLQ 82

Query: 287 VNAVAALVNL-SLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNK 344
             +   L N+ S   +   +++++G VP  +++L +   + QE A  A+ ++A D    +
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 345 TAIGVLGALPPLLHLLKSDSERTQHDSAL-ALYHLSLVKSNRTKLVKL-GSVNALLGMVN 402
             +     LPPLL L    +  T   +A+ AL +L   KS   +  K+   +N L  ++ 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 403 SGHMTGR--VLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY 459
                        L  L+   +D   AV+D+G    LV +L              +  + 
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRAVG 259

Query: 460 ALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
            +  G      +       + L+ +     E +K++A
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 95.0 bits (236), Expect = 5e-21
 Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 10/214 (4%)

Query: 291 AALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN---KTAI 347
            A+     +  N  +     +   +++++ + S E Q  A      L   + N      I
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 348 GVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNSGH 405
              G +   +  LK  ++   Q +SA  L +++   S +T+ +++ G+V   + +++S  
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120

Query: 406 MTGR--VLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS 462
              +   +  LGN+A  S   R  VLD   +  L+ +  K   L  +   + V  L  L 
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL--TMTRNAVWALSNLC 178

Query: 463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
            G       A  +    VL  +  V    V   A
Sbjct: 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADA 212

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 13/254 (5%)

Query: 257 SREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN---KMLIVRSGLVP 313
           ++           +   +  +I S+    Q++A      L  ++ N     +I   G+V 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 314 PIVDVLMAGS-AEAQEHACGAIFSLALDDQNKT-AIGVLGALPPLLHLLKSDSERTQHDS 371
             V+ L        Q  +   + ++A  +  +T  +   GA+P  + LL S+ E  Q  +
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 372 ALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRV-A 426
             AL +++      R  ++    +  LL + +  +   MT   +  L NL          
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER 486
              S  +  L  +L                 L  LS G          AG+   L+ +  
Sbjct: 188 AKVSPCLNVLSWLLFVSD---TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244

Query: 487 VGSEHVKEKAKRML 500
                V   A R +
Sbjct: 245 HNDYKVVSPALRAV 258

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 86.5 bits (214), Expect = 3e-18
 Identities = 34/219 (15%), Positives = 86/219 (39%), Gaps = 7/219 (3%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
           +     L       + +A  +L  L+    +   ++    +   L  L++     V   A
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254

Query: 290 VAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAI 347
           + A+ N+   + I   +I+    +  ++ +L +     ++ AC  I ++   ++     +
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK--LVKLGSVNALLGMVNSGH 405
                 P L+ +L++   RT+ ++A A+ + +   S      LV+LG +  L  ++    
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374

Query: 406 --MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK 442
             +    L  L N+    + + A  +  G+     ++ +
Sbjct: 375 SKIVQVALNGLENILRLGE-QEAKRNGTGINPYCALIEE 412

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  102 bits (257), Expect = 7e-27
 Identities = 27/76 (35%), Positives = 36/76 (47%)

Query: 39  TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN 98
           + E P  F CP+S  LM DPV+VS+G T+ER+        G         T   + + PN
Sbjct: 2   SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61

Query: 99  LALKSTILNWCHKQSL 114
             LKS I  WC    +
Sbjct: 62  YVLKSLIALWCESNGI 77

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  110 bits (276), Expect = 6e-26
 Identities = 49/281 (17%), Positives = 106/281 (37%), Gaps = 15/281 (5%)

Query: 232 FVQKLKSPQVHEV-EEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAV 290
           FV  L       +  E+  +L  +     E   ++     + A  SL+ S + ++   AV
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 164

Query: 291 AALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL------DDQN 343
            AL N++ +    + L+++ G + P++ +L                +  L       +  
Sbjct: 165 WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 224

Query: 344 KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVN 402
                V   LP L+ LL  +      DS  A+ +L+   + R ++V K G V  L+ ++ 
Sbjct: 225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284

Query: 403 SGHMTGR--VLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY 459
           +  +      L  +GN+ + +D     V+D+G +     +L        + Q+     + 
Sbjct: 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---KTNIQKEATWTMS 341

Query: 460 ALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRML 500
            ++ G           G+   L+ +        +++A   +
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  105 bits (263), Expect = 3e-24
 Identities = 51/306 (16%), Positives = 102/306 (33%), Gaps = 27/306 (8%)

Query: 212 SSELEPQTLNHPNSNEQEDY-----FVQKLKSPQVHEVEEALISLRKLT-----RSREET 261
            ++ + + +    SN+          V+ + S  +    +A  + RKL         +  
Sbjct: 37  GTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96

Query: 262 RVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNL-SLEKINKMLIVRSGLVPPIVDVLM 320
             +   P+ +  L     +  + +Q  +  AL N+ S        +V  G +P  + +L 
Sbjct: 97  IRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153

Query: 321 AGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS 379
           +  A   E A  A+ ++A D    +  +   GA+ PLL LL      T     L     +
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213

Query: 380 LVKSNRTK------LVKLGSVNALLGMVNSGHMTGR--VLLILGNLASCSDGRV-AVLDS 430
           L    R K            +  L+ +++             +  L    + R+  V+  
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273

Query: 431 GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSE 490
           G V  LV +L              +  +  +  G          AG   V   +      
Sbjct: 274 GVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 330

Query: 491 HVKEKA 496
           +++++A
Sbjct: 331 NIQKEA 336

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 90.8 bits (225), Expect = 2e-19
 Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 18/254 (7%)

Query: 252 RKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGL 311
                 R                R  + S       +      + ++  I       +  
Sbjct: 8   SSGLVPRGSGMKET---AAAKFERQHMDSP------DLGTDDDDKAMADIGSNQGTVNWS 58

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL--GALPPLLHLL-KSDSERTQ 368
           V  IV  + + + E+Q  A  A   L   ++      ++  G +P  +  L K+D    Q
Sbjct: 59  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118

Query: 369 HDSALALYHLSLVKSNRTK-LVKLGSVNALLGMVNSGHMTGRV--LLILGNLASCSDG-R 424
            +SA AL +++   S +TK +V  G++ A + ++ S H       +  LGN+A      R
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178

Query: 425 VAVLDSGGVECLVGMLRKGTE--LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLM 482
             V+  G ++ L+ +L       L+     +    L  L         L A   +   L+
Sbjct: 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238

Query: 483 RMERVGSEHVKEKA 496
           R+       V   +
Sbjct: 239 RLLHHNDPEVLADS 252

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 87.8 bits (217), Expect = 1e-18
 Identities = 44/247 (17%), Positives = 91/247 (36%), Gaps = 14/247 (5%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
             F+  L SP  H  E+A+ +L  +       R  +     +  L +L+     +     
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

Query: 290 VAALVNLSLEKINK------MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN 343
               +  +L  + +       L     ++P +V +L     E    +C AI  L      
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265

Query: 344 KTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMV 401
           +  + V  G +P L+ LL +        +  A+ ++      +T+ V   G++     ++
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325

Query: 402 NSGHMTGR--VLLILGNLASCSDGRV-AVLDSGGVECLVGMLRKGTELSESTQESCVSVL 458
            +     +      + N+ +    ++  V++ G V  LVG+L K       TQ+     +
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA---DFKTQKEAAWAI 382

Query: 459 YALSHGG 465
              + GG
Sbjct: 383 TNYTSGG 389

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 84.3 bits (208), Expect = 2e-17
 Identities = 32/224 (14%), Positives = 86/224 (38%), Gaps = 13/224 (5%)

Query: 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAV 290
             V+ L       + ++  ++  LT    E    +    ++  L  L+ +    +   A+
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295

Query: 291 AALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIG 348
            A+ N+          ++ +G +     +L       Q+ A   + ++    Q     + 
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355

Query: 349 VLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR--TKLVKLGSVNALLGMVNSGH- 405
             G +P L+ +L     +TQ ++A A+ + +   +      LV  G +  L+ ++++   
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415

Query: 406 -MTGRVLLILGNLASCSDG-------RVAVLDSGGVECLVGMLR 441
            +   +L  + N+   ++         + + + GG++ +  + R
Sbjct: 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 10/170 (5%)

Query: 338 ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT--KLVKLGSVN 395
           A+ D       V  ++  ++  + S++  +Q  +  A   L   +       +++ G + 
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

Query: 396 AL---LGMVNSGHMTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451
                LG  +   +       L N+AS  S+   AV+D G +   + +L           
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP---HAHIS 160

Query: 452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMR-MERVGSEHVKEKAKRML 500
           E  V  L  ++  G  F+ L    G  + L+  +       +     R L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  109 bits (274), Expect = 1e-25
 Identities = 56/292 (19%), Positives = 111/292 (38%), Gaps = 12/292 (4%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
             F+Q L +  V   E+A+ +L  +     + R  +     +  +  L  S   ++   A
Sbjct: 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235

Query: 290 VAALVNLSLEKIN-KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348
              L NL   K       V S  +P +  ++ +   E    AC AI  L+   Q      
Sbjct: 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295

Query: 349 V-LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV-KLGSVNALLGMVNSGHM 406
           + +     L+ LL  +S   Q  +  A+ ++      +T++V   G + AL  +++S   
Sbjct: 296 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355

Query: 407 TGR--VLLILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463
             +      + N+ + + +   AV+D+  +  LV +L         T++     +   S 
Sbjct: 356 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA---EYKTKKEACWAISNASS 412

Query: 464 GGLRFKGLAAA---AGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEE 512
           GGL+   +       G  + L  +  +    + E     LE +    E ++E
Sbjct: 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  107 bits (268), Expect = 7e-25
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 17/275 (6%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSL-----CTPRLLLALRSLIISRYTNVQV 287
            Q+L S  + E   A +  R++        + +       PRL+  +R    ++   +Q+
Sbjct: 93  TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPEMLQL 149

Query: 288 NAVAALVNL-SLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKT 345
            A  AL N+ S       ++V +  VP  + +L  GS E +E A  A+ ++A D    + 
Sbjct: 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209

Query: 346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSG 404
            +    A+ P+L L  S+       +   L +L   K  +     +  ++  L  ++ S 
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269

Query: 405 HMTGRV--LLILGNLASCSDGRV-AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYAL 461
                V     +  L+      + AV+D    + LV +L      S   Q   +  +  +
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---STLVQTPALRAVGNI 326

Query: 462 SHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
             G      +   AG+   L  +     E++K++A
Sbjct: 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 5/177 (2%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
           V+ L          AL ++  +    +     +    +L ALR L+ S   N++  A   
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364

Query: 293 LVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL- 350
           + N++         ++ + L+PP+V +L     + ++ AC AI + +     +  I    
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 424

Query: 351 ---GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG 404
              G + PL  LL+    R    +  AL ++  +     +   L        +  +G
Sbjct: 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  100 bits (249), Expect = 4e-24
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 27/220 (12%)

Query: 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI-NKMLIVRSGLVPPIVDVLMAGSAEA 326
            R +  L +       +    A   + +   +K   +  + +   +  ++ +L   + + 
Sbjct: 11  ERAVSMLEA--DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68

Query: 327 QEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSN 384
           Q   CGA+ +L   D+ NK  +  L  +P LL +LK +    T+      L++LS     
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 385 RTKLVKLGSVNALLGMVNSGHMTGRVLL-----------------ILGNLASCSD-GRVA 426
           +  ++    +     ++                             L N++S    GR A
Sbjct: 129 KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 427 VLDSGG-VECLVGMLRKGTELSES---TQESCVSVLYALS 462
           +    G ++ LV  +R      +      E+CV +L+ LS
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 30/175 (17%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSL----CTPRLLLALRSLIISRYTNVQV 287
            +Q LK            +LR L     + ++ +      PRLL  L+    +R    + 
Sbjct: 57  LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ---TRDLETKK 113

Query: 288 NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGS---------------AEAQEHACG 332
                L NLS     K L++   L+    ++++  S                +   +  G
Sbjct: 114 QITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173

Query: 333 AIFSL-ALDDQNKTAI-GVLGALPPLLHLLKSDSERTQHDSAL------ALYHLS 379
            + ++ +     + A+    G +  L+H ++      Q D          L++LS
Sbjct: 174 CLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 353 LPPLLHLLKSDS--ERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGHMTGR 409
           L   + +L++D         +A  + H    KS  R ++ +L  +  LL ++   +   +
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 410 --VLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL 466
             V   L NL    +  ++ V +  GV  L+ +L++       T++    +L+ LS    
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDK 127

Query: 467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL 502
             K L     +  +   +    S   +    +   L
Sbjct: 128 L-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =   99 bits (248), Expect = 1e-22
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 30/221 (13%)

Query: 268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEA 326
           P+ +  L S    +    Q      + +   +    K  + + G +  +VD+L + +   
Sbjct: 5   PKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 327 QEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSLVKSN 384
           Q+ A GA+ +L      NK        +   + LL ++ +   Q      L++LS     
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 385 RTKLVKLGSVNALLGMVNSGHMTGRVLL------------------ILGNLASCSDGRVA 426
           + +L+   ++  L   V                              L NL+S   GR  
Sbjct: 121 KEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 427 VLDSGG-VECLVGMLRKGTELSES---TQESCVSVLYALSH 463
           + +  G ++ L+  ++     S     + E+C+ VL+ LS+
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 89.9 bits (222), Expect = 3e-19
 Identities = 47/289 (16%), Positives = 86/289 (29%), Gaps = 21/289 (7%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            VQ L S            ++      E  +  +     +  L  L+ S   NVQ  A  
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 292 ALVNLSLEKI-NKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV 349
           AL NL      NK+   R   +   V +L   G+AE Q+   G +++L+  D+ K  + +
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-I 125

Query: 350 LGALPPLLHLL----------------KSDSERTQHDSALALYHLSLVKSNRTKLVKL-G 392
             ALP L   +                +        ++   L +LS   + R  +    G
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 393 SVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452
            +++L+  V +     R          C    ++      V      L      +  T++
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA-YTEK 244

Query: 453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLE 501
           S        S   +                    +           ++ 
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 82.6 bits (203), Expect = 6e-17
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 19/210 (9%)

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHD 370
           +P  V  L +   + Q      I      D+  K  +  LG +  L+ LL+S ++  Q  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 371 SALALYHLSLVKS-NRTKLVKLGSVNALLG-MVNSGHMTGR--VLLILGNLASCSDGRVA 426
           +A AL +L    + N+ +  +   +   +  +  +G+   +  +  +L NL+S  + +  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 427 VLDSGGVECLVGML-------------RKGTELSESTQESCVSVLYALSHGGLRFKGLAA 473
           ++ +  +  L   +                  +      +    L  LS      + +  
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 474 AAGMAEVLMRMERVGSEHVKEKAKRMLELM 503
            +G+ + LM   +      +   K +   M
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCM 212

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 81.0 bits (199), Expect = 2e-16
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 44/313 (14%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAV 290
            V  L+SP  +  + A  +LR L       ++       +    SL+  +    +Q    
Sbjct: 49  LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108

Query: 291 AALVNLSLEKINKMLIVRSGLVPPIVDVLM----------------AGSAEAQEHACGAI 334
             L NLS     K  ++   L P + D ++                    E   +A G +
Sbjct: 109 GLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

Query: 335 FSLALDDQNKTAIGVL-GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGS 393
            +L+  D  +  +    G +  L+  +++    ++ D       + ++ +   +L     
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 394 VNALLGMVNSGH------------------MTGRVLLILGNLASCSDGRVAVLDSGGVEC 435
                   N+ +                  M       L    +   G   +  S  +  
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 436 LVGMLRKGTELSESTQESCVSVLYALSHGGLRFKG-----LAAAAGMAEVLMRMERVGSE 490
            + ++ K     ++T E+C   L  L+             +         + R+ + G+ 
Sbjct: 288 YLNLMGKSK--KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345

Query: 491 HVKEKAKRMLELM 503
            V      +L  M
Sbjct: 346 DVVRSGASLLSNM 358

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 27/240 (11%), Positives = 75/240 (31%), Gaps = 17/240 (7%)

Query: 204 CYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV 263
            Y   +   +       N  N+  ++                     L +   + + +  
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278

Query: 264 SLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL------EKINKMLIVRSGLVPPIVD 317
              +  +   L  +  S+          AL NL+         +++++ ++   +P I  
Sbjct: 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR 338

Query: 318 VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL------KSDSERTQHDS 371
           +L +G+++        + +++        +G     P +  LL       S+SE     +
Sbjct: 339 LLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSA 397

Query: 372 ALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRV-LLILGNLASCSDGRVAV 427
              + +L         +      +N ++ +  S           L+L ++ S  + +  +
Sbjct: 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 97.6 bits (242), Expect = 2e-21
 Identities = 33/271 (12%), Positives = 79/271 (29%), Gaps = 19/271 (7%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
           +   +      +   + +   L  + E+  +      L          ++    +     
Sbjct: 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELA---------KFAKQHIPEEHE 477

Query: 293 LVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGA 352
           L ++        ++   G+   +  +    S  +QE     + ++    + +  +   G 
Sbjct: 478 LDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537

Query: 353 LPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA------LLGMVNSGHM 406
           +  LL +    +E+ +  +  AL  + +  +         S++       LL    +   
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 407 TGRVLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
               L+ L NLAS ++  R  ++   GV  +   L    E       +    L  L    
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYLTRAAAQCLCNLVMSE 654

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKA 496
              K         + L  +     E      
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEETATAC 685

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.0 bits (199), Expect = 4e-16
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 12/242 (4%)

Query: 236 LKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII----SRYTNVQVNAVA 291
                      A  +L ++  +     VS    R L  +R L+              ++ 
Sbjct: 545 ALEGTEKGKRHATQALARIGIT-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLM 603

Query: 292 ALVNL-SLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGV 349
           AL NL S+ +  +  I++   V  I   LM         A   + +L + +   K   G 
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLV--KLGSVNALLGMVNSGHMT 407
              +  L  L + + E T    A AL  ++ V     + +      ++ L  ++ +    
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723

Query: 408 G--RVLLILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464
              R ++I+ N+ +   +    + ++  +E L G+ +   +     +E     L A    
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

Query: 465 GL 466
            +
Sbjct: 784 RI 785

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 78.4 bits (192), Expect = 2e-15
 Identities = 39/280 (13%), Positives = 90/280 (32%), Gaps = 20/280 (7%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA 292
           +  + +      +           S+++   +LC  + +  L+ L  S+   ++V A+  
Sbjct: 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCE-QGVDILKRLYHSKNDGIRVRALVG 353

Query: 293 LVNLSLEKIN--KMLIVRSGLVPPIVDVL------MAGSAEAQEHACGAIFSLALDDQNK 344
           L  L         +     G    + +             + +  A   +  L LD + K
Sbjct: 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK 413

Query: 345 TAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS 403
             +     ++  L+ L +  ++   +       +L      +  L ++  +         
Sbjct: 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIP 473

Query: 404 GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463
                     L ++   +     + + G    L  + +     S ++QE    VL A+  
Sbjct: 474 EEHE------LDDVDFINKRITVLANEGITTALCALAKTE---SHNSQELIARVLNAVCG 524

Query: 464 GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM 503
                +G     G  + L+RM   G+E  K  A + L  +
Sbjct: 525 LK-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 62.2 bits (150), Expect = 3e-10
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 18/234 (7%)

Query: 245 EEALISLRKL-TRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNL--SLEKI 301
             A + L ++      +   +  T ++   ++  +++     +V    A+  L      +
Sbjct: 222 TIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDV 281

Query: 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK 361
              ++ R G++  I+ +        Q  AC  + + +       A+     +  L  L  
Sbjct: 282 GNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL-CEQGVDILKRLYH 340

Query: 362 SDSERTQHDSALALYHLSLVKSNRTKLVKLGS----------VNALLGMVNSGHMTGRVL 411
           S ++  +  + + L  L         +   G              L+       +     
Sbjct: 341 SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400

Query: 412 LILGNLASCSDGRVA-VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG 464
             L  L   ++ +   + D   +  L+ + R G    +S     V+    L + 
Sbjct: 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNA 451

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 88.5 bits (218), Expect = 1e-18
 Identities = 55/272 (20%), Positives = 93/272 (34%), Gaps = 34/272 (12%)

Query: 222 HPNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTR--SREETRVSLCTPRLLLALRSLII 279
                 +E    Q   +P       +L SL  L +             P ++  L     
Sbjct: 3   PEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGF--- 59

Query: 280 SRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338
            R   V+ NA A L +L       K  + +   +P +V +L     E    ACGA+ +++
Sbjct: 60  -RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118

Query: 339 L--DDQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVN 395
              D  NK AI     +P L+ LL K+            L++LS   S + ++V      
Sbjct: 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHA 178

Query: 396 ALLGMVNSGHMTGRVLL-------------------ILGNLASCSD--GRVAVLDSGGVE 434
               ++       R                       L N++S      R      G V+
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238

Query: 435 CLVGMLRKGTELSES---TQESCVSVLYALSH 463
            L+ +++      +S     E+CV +L  LS+
Sbjct: 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 79.2 bits (194), Expect = 1e-15
 Identities = 33/230 (14%), Positives = 77/230 (33%), Gaps = 21/230 (9%)

Query: 289 AVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAI 347
              A ++   +        R   +P ++ +L       + +A   +  L   +D+ KT +
Sbjct: 27  GSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDV 86

Query: 348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS--NRTKLVKLGSVNALLGMVNSGH 405
             L  +P L+ LL    +     +  AL ++S  +   N+  +     V AL+ ++    
Sbjct: 87  RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR 146

Query: 406 ---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSEST------------ 450
              +T  +   L NL+S    ++ ++D         ++   +                  
Sbjct: 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206

Query: 451 --QESCVSVLYALSHGGL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAK 497
               +    L  +S       + L    G+ + L+ + +         +K
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 76.1 bits (186), Expect = 9e-15
 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 20/254 (7%)

Query: 231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLI-ISRYTNVQVNA 289
           Y V +         E A         S       L  P ++    SL+  S+   +   +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 290 VAALVNLSLEK-----INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK 344
             A+ NL   +       +  + +   +  I D+L        + A GA+ +LA+D +NK
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389

Query: 345 TAIGVLGALPPLLHLLKSDSERTQHDS-----ALALYHLSLVKS----NRTKLVKLGSVN 395
             IG   A+P L+  L    + +  +         L  ++ V +       KL +   + 
Sbjct: 390 ELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIE 448

Query: 396 ALLGMVNSGHMTGRVL----LILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ 451
            L+ +  SG+ + + +    L+L  +    + R  +   G  +    +       S+S+ 
Sbjct: 449 KLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSH 508

Query: 452 ESCVSVLYALSHGG 465
               S L  +    
Sbjct: 509 SYDDSTLPLIDRNQ 522

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 69.6 bits (169), Expect = 9e-13
 Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 10/201 (4%)

Query: 310 GLVPPIVDVLMAGSAEAQEHACGAIFSL--ALDDQNKTAIGVLGALPPLLHLLKSDSERT 367
            ++   V       A   +H  G++ SL                 LP ++ +L    +  
Sbjct: 5   FMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAV 64

Query: 368 QHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGHMTGR--VLLILGNLASCS--D 422
           + ++A  L HL       +T + KL  +  L+G+++             L N++     D
Sbjct: 65  KSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124

Query: 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS-HGGLRFKGLAAAAGMAEVL 481
            ++A+ +  GV  LV +LRK         E     L+ LS H  ++ + +  A       
Sbjct: 125 NKIAIKNCDGVPALVRLLRKAR--DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182

Query: 482 MRMERVGSEHVKEKAKRMLEL 502
           + +   G E    +  +   +
Sbjct: 183 VIIPHSGWEREPNEDCKPRHI 203

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score = 75.0 bits (184), Expect = 6e-16
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 35  QKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERAC--AHVCKTLGFTPTLVDGTTPDF 92
           +K +  E P      +S  LM +P +  SG T++R     H+ +   F P  V  +    
Sbjct: 96  EKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDP--VTRSPLTQ 153

Query: 93  STVIPNLALKSTILNWCHK 111
             +IPNLA+K  I  +  +
Sbjct: 154 DQLIPNLAMKEVIDAFIQE 172

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 9/235 (3%)

Query: 225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLAL-RSLIISRYT 283
           S        +  ++    E E AL  L  L  + +      C    +  L    + +   
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAA 96

Query: 284 NVQVNAVAALVNL-SLEKINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALD- 340
            ++  A   +          +  ++  G +  ++ +L        +  A  AI  L  + 
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 341 DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLG 399
           +        L     L+  ++   ++ +  SA  L +L +    ++  L  +G V  L+ 
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

Query: 400 MVNSGHMTGR--VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQE 452
           +V + H      VL  L +L +     V          L  +LR   +L +  +E
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQLLQQHEE 270

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 17/82 (20%)

Query: 39  TAEPPGEFLCPVSGSLMADPVVVSSGHTFERAC--AHVCKTLGFTPTLVDGTTP------ 90
            ++ P EF  P+  +LM DPV + SG   +R+    H+         L   T P      
Sbjct: 8   YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL---------LNSPTDPFNRQML 58

Query: 91  DFSTVIPNLALKSTILNWCHKQ 112
             S + P   LK  I  W  ++
Sbjct: 59  TESMLEPVPELKEQIQAWMREK 80

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 69.4 bits (170), Expect = 7e-15
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 17/81 (20%)

Query: 40  AEPPGEFLCPVSGSLMADPVVVSSGHTFERAC--AHVCKTLGFTPTLVDGTTP------D 91
           ++ P EF  P+  +LM DPV + SG   +R+    H+         L   T P       
Sbjct: 24  SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL---------LNSPTDPFNRQTLT 74

Query: 92  FSTVIPNLALKSTILNWCHKQ 112
            S + P   LK  I  W  ++
Sbjct: 75  ESMLEPVPELKEQIQAWMREK 95

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 25  SSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGH-TFERACAHVCKTLGFT-P 82
           SS S+   Q ++   A+   EFL P+  +LM DPVV+ S   T +R+          T P
Sbjct: 2   SSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61

Query: 83  TLVDGTTPDFSTVIPNLALKSTILNWCHKQS 113
              + +      + PN  LK  I  W  ++ 
Sbjct: 62  --FNRSPLTMDQIRPNTELKEKIQRWLAERK 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 58/412 (14%), Positives = 117/412 (28%), Gaps = 118/412 (28%)

Query: 211 SSSELEPQTLNHPNSNEQEDYFVQKLKSPQVHEVEEALIS-LRK-----LTRSREETRVS 264
           S  E++   +   ++          L S Q   V++ +   LR      ++  + E R  
Sbjct: 47  SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ- 104

Query: 265 LCTPRLLLALRSLIISRYT---NVQVNAVAALVNLSLEKINKMLIVRSGL--VPPIVDVL 319
                      S++   Y    +   N        ++ ++   L +R  L  + P  +VL
Sbjct: 105 ----------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 320 ---MAGS------AEA------QEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD- 363
              + GS       +       Q      IF L L + N     VL  L  LL+ +  + 
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNW 213

Query: 364 SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLAS---- 419
           + R+ H S + L  +  +++   +L+K                    LL+L N+ +    
Sbjct: 214 TSRSDHSSNIKL-RIHSIQAELRRLLKS-------------KPYENCLLVLLNVQNAKAW 259

Query: 420 ------C------SDGRVAVLDSGGVECLVGM--LRKGTELSESTQ--ESCVSVLY---- 459
                 C         +V    S      + +          E        +        
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 460 --ALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVK-EKAKRMLEL---------MKGR- 506
              L+    R   +A +  + + L   +    +HV  +K   ++E           +   
Sbjct: 320 REVLTTNPRRLSIIAES--IRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 507 -----------------------AEEEEEGVDWDELLDSGLVSRSRFRLGYG 535
                                    + +  V  ++L    LV +        
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 63/413 (15%), Positives = 124/413 (30%), Gaps = 129/413 (31%)

Query: 11  PKRQKWKISFYRSSSSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERA 70
            K    ++  Y     +     +L+       P + +  + G  +       SG T    
Sbjct: 127 AKYNVSRLQPYLK---LRQALLELR-------PAKNVL-IDG--VL-----GSGKT---- 164

Query: 71  C--AHVCKTLGFTPTLVDG---------TTPDFSTVIPNLALKSTI-LNWCHKQSLNPPK 118
                VC +      +             +P+ + +     L   I  NW  +   +   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 119 PLEFSSAEKLVRASMESSQSKGKAMAVSEKELI-RGVKEKPSV-SFNHAVSELTRRPAYF 176
            L   S +  +R  ++S   +   +      L+   V+   +  +FN             
Sbjct: 224 KLRIHSIQAELRRLLKSKPYE-NCL------LVLLNVQNAKAWNAFNL------------ 264

Query: 177 YASSSDESMGESSKVSTPPLQLTTRPSCYSSSSSSSSELEPQTLNHPNSNEQEDYFVQKL 236
                      S K+    L LTTR          +  L   T  H + +          
Sbjct: 265 -----------SCKI----L-LTTR------FKQVTDFLSAATTTHISLDHHSMTLTPD- 301

Query: 237 KSPQVHEVEEALISLRKLTRSREETRVSLCT--PRLLLALRSLI----------ISRYTN 284
                 EV+  L  L+ L    ++    + T  PR L    S+I             + +
Sbjct: 302 ------EVKSLL--LKYLDCRPQDLPREVLTTNPRRL----SIIAESIRDGLATWDNWKH 349

Query: 285 VQVNAVAALVNLSLEKIN--------KMLIV--RSGLVPPIVDVLMAGSAEAQEHACGAI 334
           V  + +  ++  SL  +           L V   S  +P I+  L+       +     +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVV 407

Query: 335 ------FSLALDDQNKTAIGVLGALPPLLHL---LKSDSERTQHDSALALYHL 378
                 +SL      ++ I +     P ++L   +K ++E   H S +  Y++
Sbjct: 408 VNKLHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDHYNI 455

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 18/92 (19%)

Query: 30  KAHQLQKPQTAEPPGEFLCPVSGSLMADPVVV-SSGHTFERAC--AHVCKTLGFTPTLVD 86
           KA + +  +  + P EFL P+  ++M DPV++ +S    +R+   AH+         L D
Sbjct: 876 KADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL---------LSD 926

Query: 87  GTTP------DFSTVIPNLALKSTILNWCHKQ 112
            T P          V PN  L+  IL +  ++
Sbjct: 927 STDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 35  QKPQTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACA--HVCKTLGFTPTLVDGTTPDF 92
           +K +  + P      +S  LM +P +  SG T++R     H+ +   F P      T + 
Sbjct: 198 EKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE- 256

Query: 93  STVIPNLALKSTILNWCHK 111
             +IPNLA+K  I  +  +
Sbjct: 257 -QLIPNLAMKEVIDAFISE 274

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 12/87 (13%), Positives = 31/87 (35%)

Query: 293 LVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGA 352
                +   N+  I+R+ L+  +   +   S   ++     I+++         +   GA
Sbjct: 440 AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGA 499

Query: 353 LPPLLHLLKSDSERTQHDSALALYHLS 379
           +  +L  L +  +  +    L    L+
Sbjct: 500 VKIILEYLANKQDIGEPIRILGCRALT 526

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 28/239 (11%), Positives = 76/239 (31%), Gaps = 15/239 (6%)

Query: 230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNA 289
               + L    V     + + L K     + T ++L   +L     + I  R       +
Sbjct: 299 QLLERSLNVEDVQIY--SALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVEMS 354

Query: 290 VAALVNLSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFS--LALDDQNKTA 346
           V AL  LSL+  +  M+         ++ ++ +       +    I +    L ++    
Sbjct: 355 VEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414

Query: 347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHM 406
                            +++   +         ++  N   +++   ++ L   +++   
Sbjct: 415 XXXXXXXXXXXXXXXPAADKVGAE---KAAKEDILLFNEKYILRTELISFLKREMHNLSP 471

Query: 407 TGRVLL--ILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH 463
             +  +  I+ N+    +    +   G V+ ++  L    ++ E  +        AL+ 
Sbjct: 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG---CRALTR 527

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 45  EFLCPVSGSLMADPVVVSS-GHTFERAC-------AHVCKTLGFTP-TLVDGTTPDFSTV 95
            F CP++   M  PV     GHT+E              K   + P      T    S +
Sbjct: 7   GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66

Query: 96  IPNLALKSTILNWCHKQS 113
           I + AL+  I N   K+ 
Sbjct: 67  IQDEALRRAIENHNKKRH 84

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 45 EFLCPVSGSLMADPVV-VSSGHTFERAC 71
            LC +SG +   PV+   S   FE++ 
Sbjct: 3  HMLCAISGKVPRRPVLSPKSRTIFEKSL 30

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 233 VQKLKSPQVHEVEEALISLRKLTRSR----EETRVSLCTPRLLLALRSLIISRYTNVQVN 288
              L S   +  E A  +L+K+        +   +      ++             ++ +
Sbjct: 134 CSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSH 193

Query: 289 AVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG 348
           AVA +    + +   +++     +  +  +      E +++ C A+  L     ++    
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253

Query: 349 VLGALPPLLHLLKSDSERTQHD 370
           +   +  +L   +   E    +
Sbjct: 254 MHNIVEYMLQRTQDQDENVALE 275

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 41  EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVC-KTLGFT-PTLVDGTTPDFSTVIPN 98
               ++ CP+    + + V    GH F +AC     +  G   P  VD      + + P+
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCP--VDNEILLENQLFPD 71

Query: 99  LALKSTILN 107
              K  IL+
Sbjct: 72  NFAKREILS 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	546
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.93
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.86
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.86
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.85
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.84
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.81
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.79
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.78
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.78
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.77
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.77
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.66
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.6
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.58
3grl_A	651	General vesicular transport factor P115; vesicle t	99.56
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.54
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.53
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.51
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.44
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.44
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.42
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.42
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.41
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.4
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.4
3grl_A	651	General vesicular transport factor P115; vesicle t	99.4
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.39
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.39
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.38
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.38
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.38
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.36
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.36
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.34
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.32
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.31
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.29
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.28
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.25
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.24
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.21
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.21
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.21
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.2
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.19
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.16
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.16
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.15
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.09
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.05
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.03
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.02
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.93
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.88
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.87
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.85
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.85
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.85
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.82
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.81
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.8
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.77
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.77
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.72
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.72
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.71
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.7
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.69
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.66
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.64
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.63
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.58
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.57
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.55
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.52
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.41
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.4
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.37
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.37
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.36
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.34
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.33
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.31
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.3
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.27
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.26
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.26
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.25
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.2
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.19
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.12
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.09
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.04
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.98
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.95
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.93
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.88
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.85
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.82
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.81
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.76
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.73
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.57
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.44
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.35
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.28
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.22
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.05
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.77
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.75
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.55
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.14
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.13
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.12
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.08
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.97
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	95.91
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.51
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.29
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	94.72
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.15
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.13
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.71
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	93.66
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.65
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.56
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.36
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.28
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.87
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.8
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.68
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	92.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.69
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.29
2x19_B	963	Importin-13; nuclear transport, protein transport;	88.26
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	87.9
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	87.78
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.48
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.15
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	86.04
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	85.35
3nw0_A	238	Non-structural maintenance of chromosomes element	84.67
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.39
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	82.71
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	82.7
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.33
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	82.22
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	82.01
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	81.39
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.35
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	81.11
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.42

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.9e-29  Score=260.28  Aligned_cols=266  Identities=20%  Similarity=0.211  Sum_probs=237.3

Q ss_pred             HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCC-chHHHHHhc
Q 009036          242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNLSLEK-INKMLIVRS  309 (546)
Q Consensus       242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~  309 (546)
                      ..+..|++.|.+++.+ +++|..+++.|+++.|+.+|..           .++.+|..|+++|.||+.+. .++..+...
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            3466899999999986 7899999999999999999952           24679999999999999875 478777654


Q ss_pred             -CChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-Cchh
Q 009036          310 -GLVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSN  384 (546)
Q Consensus       310 -g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n  384 (546)
                       |+|+.|+.+|+++++++++.|+++|.+|+..  +++|..|.+.|+++.|+++| ++++.++++.|+.+|+||+. .+++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence             5699999999999999999999999999985  46899999999999999975 56789999999999999998 6789


Q ss_pred             HHHHH-hcCcHHHHHHHHhCc------hHHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036          385 RTKLV-KLGSVNALLGMVNSG------HMTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       385 ~~~iv-~~Gav~~Lv~lL~~~------~~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      +..++ ..|+++.|+++|.++      .+++.|+++|.||+.    +++++..+++.|+++.|+++|.+   .+..+++.
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~  282 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSN  282 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---SCHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---CChHHHHH
Confidence            99998 679999999999863      378999999999995    88999999999999999999998   46889999


Q ss_pred             HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      |+++|++|+.++.+.+..+.+.|+++.|+.+++++++++++.|.++|++|+...+...
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999998777888889999999999999999999999999999999998755443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=3.1e-29  Score=272.35  Aligned_cols=294  Identities=19%  Similarity=0.198  Sum_probs=252.3

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--Cch
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~n  302 (546)
                      .+..++.||++|.+++.+.|..|+..|.+++..++.+|..+++.|+||.|+.+|.+++..+|+.|+++|.||+..  ++|
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999984  799


Q ss_pred             HHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc------------------cC
Q 009036          303 KMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK------------------SD  363 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~------------------~~  363 (546)
                      |..|++.|+|+.|+.+|++ .+.+++++|+.+|++|+..+++|..|.. ++++.|+++|.                  ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence            9999999999999999997 5889999999999999999999999985 57999999872                  12


Q ss_pred             CHHHHHHHHHHHHHhhcCch-hHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCCcc-----------
Q 009036          364 SERTQHDSALALYHLSLVKS-NRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASCSD-----------  422 (546)
Q Consensus       364 ~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~~e-----------  422 (546)
                      +..++++|+++|.||+...+ +|..|++. |+|+.|+.+|.+        ...++.|+.+|.||+...+           
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            57899999999999999765 59999987 888899999974        1388999999999996521           


Q ss_pred             ---------------cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC----hhhHHHHHHCCcHHHHHH
Q 009036          423 ---------------GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG----LRFKGLAAAAGMAEVLMR  483 (546)
Q Consensus       423 ---------------~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~----~~~~~~~~~~g~v~~L~~  483 (546)
                                     |.+.+.+.++++.|+.+|..+  .++.++|+|+++|++||.+.    ...+..+.+.|+++.|+.
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                           222233345677889999764  45899999999999999864    234456667789999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          484 MERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       484 ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |+.++++.+++.|.++|++|+....       .+.+++.|++.++
T Consensus       363 LL~s~~~~v~~~A~~aL~nLs~~~~-------~~~~I~~g~ip~L  400 (584)
T 3l6x_A          363 LLTNEHERVVKAASGALRNLAVDAR-------NKELIGKHAIPNL  400 (584)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCChh-------HHHHHHhCCHHHH
Confidence            9999999999999999999998642       2455577887777

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.6e-29  Score=268.95  Aligned_cols=291  Identities=19%  Similarity=0.226  Sum_probs=250.9

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i  306 (546)
                      .++.+++.|++++++.|..|+..|++++..++.++..+++.|+||.|+.+|.++++.++..|+++|.||+.+ ++++..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            478999999999999999999999999998888898999999999999999999999999999999999997 8999999


Q ss_pred             HhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc--------cC--------CHHHHH
Q 009036          307 VRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK--------SD--------SERTQH  369 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~--------~~--------~~~~~~  369 (546)
                      ++.|+++.|+.+|+ ++++++++.|+++|.+|+..+++|..|.+ |+++.|+++|.        +.        +..+.+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999889999998 99999999993        22        456777


Q ss_pred             HHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhC--------chHHHHHHHHHHHhhCC--------------------
Q 009036          370 DSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNS--------GHMTGRVLLILGNLASC--------------------  420 (546)
Q Consensus       370 ~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~--------~~~~e~al~~L~nLa~~--------------------  420 (546)
                      .|+++|+|||..++++..+++. |+++.|+.+|.+        ....+.|+.+|.||+..                    
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            9999999999998899999998 999999999974        23788999999999732                    


Q ss_pred             -------------------------------cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh--
Q 009036          421 -------------------------------SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR--  467 (546)
Q Consensus       421 -------------------------------~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~--  467 (546)
                                                     +++.+.+.+.|+++.|+.+|..+  .++..++.|+++|++||.++..  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCcCcch
Confidence                                           12333445667889999999885  4589999999999999986532  


Q ss_pred             --h-HHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          468 --F-KGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       468 --~-~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                        . +..+.+.|+++.|+.++.+++.++++.|.++|++|+...       +...++..|+++++
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-------~~~~~i~~~~i~~L  376 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-------LLHRVMGNQVFPEV  376 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-------GGHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-------HHHHHHHHhhhHHH
Confidence              2 345567899999999999999999999999999998742       23445555666655

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=3.9e-28  Score=257.94  Aligned_cols=261  Identities=20%  Similarity=0.214  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCCc-hHHHHHh-cC
Q 009036          244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNLSLEKI-NKMLIVR-SG  310 (546)
Q Consensus       244 ~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs~~~~-nk~~i~~-~g  310 (546)
                      +..|++.|.+++.. +++|..+.+.|++++|+.+|..           .++.++.+|+++|.||+.++. ++..+.. .|
T Consensus       165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            45899999999775 8999999999999999999952           346789999999999999754 6777754 45


Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccc--cchhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc-CchhHH
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALD--DQNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL-VKSNRT  386 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~-~~~n~~  386 (546)
                      +|+.|+.+|++++++++..|+++|.+|+..  +++|..|.+.|+++.|+++| .+++..+++.|+.+|+||+. .++++.
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            699999999999999999999999999984  46899999999999999975 55788999999999999999 778999


Q ss_pred             HHH-hcCcHHHHHHHHhCc------hHHHHHHHHHHHhhC----CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          387 KLV-KLGSVNALLGMVNSG------HMTGRVLLILGNLAS----CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       387 ~iv-~~Gav~~Lv~lL~~~------~~~e~al~~L~nLa~----~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      .++ ..|+++.|+++|..+      .+++.|+++|.||+.    +++++..+++.|+++.|+.+|.+   .+..+++.|+
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~  400 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNAC  400 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHH
Confidence            998 679999999999863      278999999999994    88899999999999999999998   4588999999


Q ss_pred             HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ++|++|+.++.+.+..+.+.|+++.|+.++.++++++++.|.++|++|....+
T Consensus       401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999998777888888999999999999999999999999999999997654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=2.3e-26  Score=257.71  Aligned_cols=297  Identities=18%  Similarity=0.186  Sum_probs=256.7

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-----------------------------hhh---HHhhcCChHH
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-----------------------------ETR---VSLCTPRLLL  272 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~l~~~g~i~  272 (546)
                      +.+.++.|+..|++.+...+..|++.|.+++...+                             ..+   +.+++.|++|
T Consensus       419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            35789999999999999999999999999998542                             122   6788999999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh---h
Q 009036          273 ALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG---V  349 (546)
Q Consensus       273 ~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~---~  349 (546)
                      .|+.+|.++++.+|+.|+++|.||+.+++++..+++.|++++|+.+|.++++..+..|+++|.+|+...+....+.   .
T Consensus       499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            9999999999999999999999999988899999999999999999999999999999999999987655443332   2


Q ss_pred             cCChHHHHHhhccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHH
Q 009036          350 LGALPPLLHLLKSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~  425 (546)
                      .|++++|+.+|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.+|.+.+  +++.|+.+|.||+.+++.+.
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~  658 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK  658 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence            46999999999875 445567899999999986 578999999999999999998754  99999999999999999999


Q ss_pred             HHHh-CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-CCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036          426 AVLD-SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA-AGMAEVLMRMERVGSEHVKEKAKRMLELM  503 (546)
Q Consensus       426 ~i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~-~g~v~~L~~ll~~~s~~~k~~A~~lL~~L  503 (546)
                      .+++ .|+++.|+.++..   .+..+++.|+++|++|+.+++...+.+.+ .|+++.|+.|+.+++.++++.|.++|.+|
T Consensus       659 ~~v~~~g~l~~Lv~LL~s---~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL  735 (810)
T 3now_A          659 MFEGNNDRVKFLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM  735 (810)
T ss_dssp             HHHSSSSHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHhccCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            9986 7899999999988   46899999999999999865555555555 89999999999999999999999999999


Q ss_pred             hcCCccccccCChHHHHhcCCccccc
Q 009036          504 KGRAEEEEEGVDWDELLDSGLVSRSR  529 (546)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (546)
                      .....     ..-..+.+.|++..+.
T Consensus       736 ~~~s~-----e~~~~l~e~G~i~~L~  756 (810)
T 3now_A          736 INAGE-----EIAKKLFETDIMELLS  756 (810)
T ss_dssp             HTTCH-----HHHHHHHTSTHHHHHT
T ss_pred             HhCCH-----HHHHHHHHCCCHHHHH
Confidence            87432     1236677778777664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=246.32  Aligned_cols=299  Identities=22%  Similarity=0.232  Sum_probs=249.5

Q ss_pred             chhHHHHHHhcCC------------CCHHHHHHHHHHHHHHhccChhhhHHhhcCChH----------HHHHHHHccCC-
Q 009036          226 NEQEDYFVQKLKS------------PQVHEVEEALISLRKLTRSREETRVSLCTPRLL----------LALRSLIISRY-  282 (546)
Q Consensus       226 ~~~i~~lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i----------~~Lv~lL~s~~-  282 (546)
                      .+.++.||+.|+.            ++.+.|.+|+++|.+++...++......+.|++          +.++.++.+.. 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            4678899999975            337999999999999999888777777777777          56666666542 


Q ss_pred             -HH-----HHH-------HHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-----------CCHHHHHHHHHHHhhcc
Q 009036          283 -TN-----VQV-------NAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-----------GSAEAQEHACGAIFSLA  338 (546)
Q Consensus       283 -~~-----v~~-------~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-----------~~~~~~~~Aa~~L~~Ls  338 (546)
                       .+     +++       .|+++|.|++.++++|..|.+.|++++|+.+|..           .++.++.+|+++|.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             12     433       8999999999999999999999999999999952           24778999999999999


Q ss_pred             cccc-hhhHHhh-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHhC-c--hHHHHHH
Q 009036          339 LDDQ-NKTAIGV-LGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNRTKLVKLGSVNALLGMVNS-G--HMTGRVL  411 (546)
Q Consensus       339 ~~~~-~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~~-~--~~~e~al  411 (546)
                      ..++ ++..+.. .|+|+.|+.+|++++++++..|+++|.||+..  .+++..+++.|+|+.|+++|.. +  .+++.++
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            8765 6777754 56799999999999999999999999999984  5789999999999999998643 3  4889999


Q ss_pred             HHHHHhhC-CcccHHHHH-hCCcHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhc---CChhhHHHHHHCCcHHHHHHHH
Q 009036          412 LILGNLAS-CSDGRVAVL-DSGGVECLVGMLRKGTEL-SESTQESCVSVLYALSH---GGLRFKGLAAAAGMAEVLMRME  485 (546)
Q Consensus       412 ~~L~nLa~-~~e~r~~i~-~~g~i~~Lv~lL~~~~~~-s~~~~e~Av~~L~~L~~---~~~~~~~~~~~~g~v~~L~~ll  485 (546)
                      .+|+||+. +++++..++ ..|+++.|+++|...... ...+++.|+++|.+|+.   .++..++.+.+.|+++.|+.++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            99999998 888999998 699999999999875311 11589999999999997   6778888899999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCccccc
Q 009036          486 RVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRSR  529 (546)
Q Consensus       486 ~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (546)
                      .+++..+++.|.++|.+|+...     ...-+.+.+.|++..+.
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~~~-----~~~~~~i~~~G~I~~Lv  427 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSARN-----PKDQEALWDMGAVSMLK  427 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHSSC-----HHHHHHHHHHTHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHH
Confidence            9999999999999999998542     11235577888877764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=4.4e-26  Score=243.92  Aligned_cols=280  Identities=18%  Similarity=0.151  Sum_probs=240.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      .+.++.|++.|++++.+.|..|++.|++|+..++++|..+++.|+||.|+.+|. +++.++++.|+++|.||+.++++|.
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~  122 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE  122 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence            478999999999999999999999999999988999999999999999999999 8899999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHc--------cC--------CHHHHHHHHHHHhhcccccchhhHHhhc-CChHHHHHhhcc-----
Q 009036          305 LIVRSGLVPPIVDVLM--------AG--------SAEAQEHACGAIFSLALDDQNKTAIGVL-GALPPLLHLLKS-----  362 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~--------~~--------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~l~~Lv~lL~~-----  362 (546)
                      .+++ |+++.|+.+|.        +.        +.++..+|+++|.+|+..++++..+.+. |+++.|+.+|++     
T Consensus       123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  201 (457)
T 1xm9_A          123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS  201 (457)
T ss_dssp             HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence            9999 99999999993        22        4566679999999999988888888886 999999988763     


Q ss_pred             --------------------------------------------------------------------------------
Q 009036          363 --------------------------------------------------------------------------------  362 (546)
Q Consensus       363 --------------------------------------------------------------------------------  362 (546)
                                                                                                      
T Consensus       202 ~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (457)
T 1xm9_A          202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH  281 (457)
T ss_dssp             CTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGS
T ss_pred             CCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC
Confidence                                                                                            


Q ss_pred             --------------CCHHHHHHHHHHHHHhhcCch-----hHHHHH-hcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036          363 --------------DSERTQHDSALALYHLSLVKS-----NRTKLV-KLGSVNALLGMVNSGH--MTGRVLLILGNLASC  420 (546)
Q Consensus       363 --------------~~~~~~~~A~~aL~~Ls~~~~-----n~~~iv-~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~  420 (546)
                                    +++.+++.|+++|.||+....     +.+.++ +.|+++.|+++|.+++  ++..|+++|.||+.+
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence                          124556678899999987432     213344 5799999999998865  899999999999998


Q ss_pred             cccHHHHHhCCcHHHHHHHHccCCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHH
Q 009036          421 SDGRVAVLDSGGVECLVGMLRKGTE---LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKA  496 (546)
Q Consensus       421 ~e~r~~i~~~g~i~~Lv~lL~~~~~---~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A  496 (546)
                      ++.+..+. .|+++.|+++|....+   .++++...++.+|.++..++......+.+.|+++.|+.++.++ +++++++|
T Consensus       362 ~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A  440 (457)
T 1xm9_A          362 PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA  440 (457)
T ss_dssp             GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence            88877665 4799999999998532   1246778899999999987778888888999999999999999 99999999


Q ss_pred             HHHHHHhhcCC
Q 009036          497 KRMLELMKGRA  507 (546)
Q Consensus       497 ~~lL~~L~~~~  507 (546)
                      ..+|..+..+.
T Consensus       441 ~~~L~~~~~~~  451 (457)
T 1xm9_A          441 RLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHTTSSST
T ss_pred             HHHHHHHHcch
Confidence            99999998654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.94  E-value=1.4e-25  Score=243.72  Aligned_cols=298  Identities=18%  Similarity=0.184  Sum_probs=243.7

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      .++++.||+.|++++.++|..|+..|++|+.. ++++|..+++.|+|+.|+.+|.+ .+.++++.|+.+|.||+.++++|
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k  168 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK  168 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence            47899999999999999999999999999985 68999999999999999999997 68899999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHc------------------cCCHHHHHHHHHHHhhcccccc-hhhHHhh-cCChHHHHHhhcc-
Q 009036          304 MLIVRSGLVPPIVDVLM------------------AGSAEAQEHACGAIFSLALDDQ-NKTAIGV-LGALPPLLHLLKS-  362 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~------------------~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~-~g~l~~Lv~lL~~-  362 (546)
                      ..|++ ++++.|+.+|.                  ..+.+++.+|+++|.||+..++ ++..|.+ .|+++.|+.+|++ 
T Consensus       169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~  247 (584)
T 3l6x_A          169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE  247 (584)
T ss_dssp             HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99996 57999999772                  1257999999999999998764 4777766 4555666666542 


Q ss_pred             -------------------------------------------------------------------------CCHHHHH
Q 009036          363 -------------------------------------------------------------------------DSERTQH  369 (546)
Q Consensus       363 -------------------------------------------------------------------------~~~~~~~  369 (546)
                                                                                               .++.+++
T Consensus       248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E  327 (584)
T 3l6x_A          248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE  327 (584)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence                                                                                     2344556


Q ss_pred             HHHHHHHHhhcCc-----hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036          370 DSALALYHLSLVK-----SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK  442 (546)
Q Consensus       370 ~A~~aL~~Ls~~~-----~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~  442 (546)
                      .|+++|.|||...     .++..+.+.|+++.|+++|..++  +++.|+++|.||+.+..++..| ..|+++.||.+|..
T Consensus       328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~  406 (584)
T 3l6x_A          328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG  406 (584)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence            6667777776532     22333344589999999998754  8999999999999999888766 67899999999988


Q ss_pred             CCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcCCccccccCC
Q 009036          443 GTE-----LSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMKGRAEEEEEGVD  515 (546)
Q Consensus       443 ~~~-----~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~~~~~~~~  515 (546)
                      +..     .+.++...|+.+|.+|+..+....+.+.+.|+++.|+.++.++  ++.+++.|..+|..|..+.       +
T Consensus       407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~-------e  479 (584)
T 3l6x_A          407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK-------E  479 (584)
T ss_dssp             SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH-------H
T ss_pred             CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH-------H
Confidence            521     1467889999999999998888888999999999999999987  8999999999999998765       3


Q ss_pred             hHHHHhcCCcccccccc
Q 009036          516 WDELLDSGLVSRSRFRL  532 (546)
Q Consensus       516 ~~~~~~~~~~~~~~~~~  532 (546)
                      ....++.-+.....|-.
T Consensus       480 lr~~~kk~G~~~~~f~~  496 (584)
T 3l6x_A          480 LRKPLEKEGWKKSDFQV  496 (584)
T ss_dssp             HHHHHHTTTCCGGGGCC
T ss_pred             HHHHHHHcCCCHHHhcc
Confidence            44555555666665543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=1.5e-25  Score=243.16  Aligned_cols=297  Identities=17%  Similarity=0.206  Sum_probs=254.0

Q ss_pred             CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036          225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..+.++.||+.|+ +++++.|..|++.|.+++..+++++..+++.|+||.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3578999999996 45689999999999999999999999999999999999999999999999999999999986 677


Q ss_pred             HHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          303 KMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      +..+.+.|+++.|+.+|...     ...++..++++|.+++...... ......++++.|+.+|.+++.+++..|+++|.
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88899999999999999865     3567889999999999876543 33344689999999999999999999999999


Q ss_pred             HhhcCchhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036          377 HLSLVKSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       377 ~Ls~~~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      +|+....++ ..+++.|+++.|+.+|.+.+  ++..++.+|.||+.. ++.+..+++.|+++.|+.+|.+   .+..+++
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~  334 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQK  334 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHH
Confidence            999876554 55567799999999998755  889999999999865 4567778899999999999987   4689999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      .|+++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|.++|.+|+.....+.    ...+.+.|++..+
T Consensus       335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~----~~~L~~~g~i~~L  406 (510)
T 3ul1_B          335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ----IVYLVHCGIIEPL  406 (510)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH----HHHHHHCCCHHHH
Confidence            99999999999888888889999999999999999999999999999999987543221    2334555555443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=4e-25  Score=240.79  Aligned_cols=297  Identities=17%  Similarity=0.192  Sum_probs=255.9

Q ss_pred             CchhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036          225 SNEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..+.++.||+.|+ +.+++.|..|++.|.+++..++.++..+++.|+||.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            3578999999995 55689999999999999999999999999999999999999999999999999999999986 688


Q ss_pred             HHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          303 KMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      +..+.+.|+++.|+.+|...     ...+...++++|.+++...... ......++++.|+.+|.+++++++..|+++|.
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999999999999865     3567889999999999876543 33344689999999999999999999999999


Q ss_pred             HhhcCchh-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHH
Q 009036          377 HLSLVKSN-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQE  452 (546)
Q Consensus       377 ~Ls~~~~n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e  452 (546)
                      +|+....+ ...++..|+++.|+.+|.+.+  ++..++.+|.||+.. ++.+..+++.|+++.|+.+|.+   .++.++.
T Consensus       277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~  353 (529)
T 3tpo_A          277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQK  353 (529)
T ss_dssp             HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHH
T ss_pred             HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHH
Confidence            99986655 455667799999999998765  889999999999864 5567778899999999999987   4688999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          453 SCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       453 ~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      .|+++|.+|+.++......+.+.|+++.|+.++.+++..+++.|.++|.+|+.....+    ....+.+.|++..+
T Consensus       354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~----~~~~l~~~g~i~~L  425 (529)
T 3tpo_A          354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE----QIVYLVHCGIIEPL  425 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH----HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH----HHHHHHHCcCHHHH
Confidence            9999999999988888888899999999999999999999999999999998654222    12335556655544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.93  E-value=1.6e-25  Score=230.94  Aligned_cols=238  Identities=20%  Similarity=0.176  Sum_probs=211.5

Q ss_pred             chhHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHH
Q 009036          226 NEQEDYFVQKLKS-----------PQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAAL  293 (546)
Q Consensus       226 ~~~i~~lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L  293 (546)
                      .++++.|+..|.+           .+.+.|..|++.|.+|+..++.+|..+.. .|+||.|+.+|.+++.++++.|+++|
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  151 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  151 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            5778889988842           24678999999999999988889988865 56699999999999999999999999


Q ss_pred             HHhhcC--CchHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHhhccc-ccchhhHHh-hcCChHHHHHhhccCCH---
Q 009036          294 VNLSLE--KINKMLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLAL-DDQNKTAIG-VLGALPPLLHLLKSDSE---  365 (546)
Q Consensus       294 ~nLs~~--~~nk~~i~~~g~l~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~l~~Lv~lL~~~~~---  365 (546)
                      .||+..  +++|..|++.|+|+.|+.+| ++++.++++.|+.+|++|+. .+++|..|. ..|+++.|+++|.+++.   
T Consensus       152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~  231 (354)
T 3nmw_A          152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  231 (354)
T ss_dssp             HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred             HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence            999984  57899999999999999975 56789999999999999998 557888887 68999999999987644   


Q ss_pred             -HHHHHHHHHHHHhhc----CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhh-CCcccHHHHHhCCcHHHHH
Q 009036          366 -RTQHDSALALYHLSL----VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLA-SCSDGRVAVLDSGGVECLV  437 (546)
Q Consensus       366 -~~~~~A~~aL~~Ls~----~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa-~~~e~r~~i~~~g~i~~Lv  437 (546)
                       ++++.|+++|.||+.    .++++..+++.|+++.|+++|.+++  +++.|+++|.||+ .+++++..+++.|+|+.|+
T Consensus       232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv  311 (354)
T 3nmw_A          232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK  311 (354)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence             589999999999996    7889999999999999999998765  8999999999999 5788999999999999999


Q ss_pred             HHHccCCCCCHHHHHHHHHHHHHHhcCCh
Q 009036          438 GMLRKGTELSESTQESCVSVLYALSHGGL  466 (546)
Q Consensus       438 ~lL~~~~~~s~~~~e~Av~~L~~L~~~~~  466 (546)
                      ++|.+   .+..+++.|+.+|.+|+.+.+
T Consensus       312 ~LL~s---~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          312 NLIHS---KHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             TTTTC---SSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhC---CCHHHHHHHHHHHHHHHcCCH
Confidence            99988   468999999999999998653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.93  E-value=3.8e-25  Score=239.93  Aligned_cols=294  Identities=17%  Similarity=0.193  Sum_probs=249.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC-CchH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLT-RSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      ..++.+|+.|++++.+.|.+|+..++.+. ++...-...+++.|+||.|+.+|.. +++.+|..|+++|.||+.. ++++
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            45899999999999999999999999854 4443456788999999999999975 5689999999999999875 6788


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccC-----CHHHHHHHHHHHHH
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSD-----SERTQHDSALALYH  377 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~-----~~~~~~~A~~aL~~  377 (546)
                      ..+++.|+|+.|+.+|++++.++++.|+++|.+|+.+. +.+..+.+.|+++.|+.+|...     ....++.++++|.+
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999875 5688888999999999999864     34577899999999


Q ss_pred             hhcCchhHHHHHh-cCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHH
Q 009036          378 LSLVKSNRTKLVK-LGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR-VAVLDSGGVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       378 Ls~~~~n~~~iv~-~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      ++........+.. .|+++.|+.+|.+.+  ++..++.+|.+|+.....+ ..+.+.|+++.|+.+|.+   .+..++..
T Consensus       217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~  293 (510)
T 3ul1_B          217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTP  293 (510)
T ss_dssp             HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHH
T ss_pred             HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CChhhhhH
Confidence            9987655444443 489999999998754  8899999999999876655 455689999999999998   46899999


Q ss_pred             HHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          454 CVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       454 Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|+....+     ..+.+.+.|++...
T Consensus       294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-----~~~~v~~~g~i~~L  363 (510)
T 3ul1_B          294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-----QIQQVVNHGLVPFL  363 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTHHHHH
T ss_pred             HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-----HHHHHHhcCCHHHH
Confidence            99999999998888888889999999999999999999999999999999875432     22345555555443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=4.7e-24  Score=207.76  Aligned_cols=240  Identities=26%  Similarity=0.298  Sum_probs=220.3

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTA  346 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~  346 (546)
                      |.|+.|+.+|.+++++++..|+.+|.+++... +++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67999999999999999999999999999865 5899999999999999999999999999999999999988 677888


Q ss_pred             HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh-cCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc-c
Q 009036          347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLS-LVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS-D  422 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls-~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~-e  422 (546)
                      +.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+++.|+++.|++++.+.+  ++..++.+|.||+... +
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            899999999999999999999999999999999 46788999999999999999998754  8999999999999854 4


Q ss_pred             cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036          423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL  502 (546)
Q Consensus       423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~  502 (546)
                      .+..+.+.|+++.|+.+|.+   .++.++..|+.+|.+++..++.....+.+.|+++.|+.+++++++.+++.|.++|.+
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            55778899999999999997   468999999999999999887888888899999999999999999999999999999


Q ss_pred             hhcCCcccc
Q 009036          503 MKGRAEEEE  511 (546)
Q Consensus       503 L~~~~~~~~  511 (546)
                      |........
T Consensus       239 l~~~~~~~~  247 (252)
T 4hxt_A          239 IKSGGWLEH  247 (252)
T ss_dssp             HHHTCBCCC
T ss_pred             HHcCCCccc
Confidence            998765544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=1.1e-23  Score=228.89  Aligned_cols=279  Identities=18%  Similarity=0.203  Sum_probs=250.5

Q ss_pred             chhHHHHHHhcCCCC-HHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036          226 NEQEDYFVQKLKSPQ-VHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      .+.++.|+..|++++ +++|..|++.|.+++..++.++..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ +.++
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            467899999998886 99999999999999998899999999999999999999999999999999999999986 5678


Q ss_pred             HHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          304 MLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      ..+.+.|+++.|+.+| .+.+..++..|+++|.+|+............++++.|+.+|.+.+..++..|+++|.+|+...
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            8888999999999999 566899999999999999987655444556899999999999999999999999999999866


Q ss_pred             hhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          383 SNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       383 ~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      ..+ ..+++.|+++.|+.+|.+.+  ++..|+.+|.||+. .+..+..+++.|+++.|+.+|.+.  .++.++..|+.+|
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~A~~~L  353 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN--LKKSIKKEACWTI  353 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC--CcHHHHHHHHHHH
Confidence            554 57778899999999998754  89999999999997 455677788999999999999983  2689999999999


Q ss_pred             HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .+|+.++......+...|+++.|+.++.++++.+++.|.++|..|+..
T Consensus       354 ~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          354 SNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            999988777777778889999999999999999999999999999876

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=4.2e-24  Score=208.11  Aligned_cols=236  Identities=25%  Similarity=0.301  Sum_probs=217.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKML  305 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~  305 (546)
                      +.++.|++.|+++++++|..|+..|.+++..++.++..+.+.|+++.|+.+|.+++..++..|+.+|.+|+.+ ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            4578999999999999999999999999999888999999999999999999999999999999999999997 889999


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-ccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-ch
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KS  383 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~  383 (546)
                      +.+.|+++.|+.+|++++++++..|+.+|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|.+|+.. +.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999994 567788888899999999999999999999999999999984 45


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      ++..+++.|+++.|+.++.+++  ++..|+.+|.+|+. .++.+..+.+.|+++.|++++.+   .++.+++.|+.+|.+
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHH
Confidence            5688889999999999998754  89999999999997 55667788899999999999987   468999999999999


Q ss_pred             HhcCC
Q 009036          461 LSHGG  465 (546)
Q Consensus       461 L~~~~  465 (546)
                      |+...
T Consensus       239 l~~~~  243 (252)
T 4hxt_A          239 IKSGG  243 (252)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            98743

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=1.2e-24  Score=243.92  Aligned_cols=282  Identities=13%  Similarity=0.085  Sum_probs=248.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      .++++.|+..|+++++.+|+.|++.|.+++. ++.+|..+++.|++++|+.+|.+++...++.|+++|.||+........
T Consensus       494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            4688999999999999999999999999996 467999999999999999999999999999999999999875433322


Q ss_pred             H---HhcCChHHHHHHHccC-CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          306 I---VRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       306 i---~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      +   ...|++++|+.+|.++ +...+..|+.+|.||+..+ +++..|.+.|+++.|+.+|.++++.+++.|+++|.||+.
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            2   1136999999999876 5566679999999999875 678888889999999999999999999999999999999


Q ss_pred             CchhHHHHHh-cCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHh-CCcHHHHHHHHccCCCCCHHHHHHHH
Q 009036          381 VKSNRTKLVK-LGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLD-SGGVECLVGMLRKGTELSESTQESCV  455 (546)
Q Consensus       381 ~~~n~~~iv~-~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~-~g~i~~Lv~lL~~~~~~s~~~~e~Av  455 (546)
                      .++++..++. .|+++.|+.++...+  +++.|+++|.||+. .++....+++ .|+++.|+.+|.+   .+.+.+..|+
T Consensus       653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s---~d~~vq~~A~  729 (810)
T 3now_A          653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN---PSPAVQHRGI  729 (810)
T ss_dssp             SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC---SSHHHHHHHH
T ss_pred             ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC---CCHHHHHHHH
Confidence            9999999996 699999999998754  89999999999998 6788888998 8999999999998   5699999999


Q ss_pred             HHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC---CHHHHHHHHHHHHHhhcCCcccc
Q 009036          456 SVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG---SEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       456 ~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~---s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      .+|.+++.++.+....+.+.|+++.|..+++..   +.++.+.|.++|..+-+.+..+.
T Consensus       730 ~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~  788 (810)
T 3now_A          730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence            999999987777888899999999999998654   79999999999999987655444

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=7.2e-24  Score=230.36  Aligned_cols=295  Identities=17%  Similarity=0.183  Sum_probs=255.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhhcC-Cch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRY-TNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~-~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ...++.++..|.+++++.|..|+..|+.++.... ..+..+.+.|+++.|+.+|.+++ +.++..|+++|.+++.+ +++
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            4568999999999999999999999999976544 67888899999999999999886 99999999999999996 788


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhh-ccCCHHHHHHHHHHHHHhhc
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLL-KSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      +..+++.|+++.|+.+|.+++++++..|+++|.+|+.+. ..+..+...|+++.|+.+| .+.+..++..|+++|.+|+.
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~  232 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR  232 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            889999999999999999999999999999999999774 5688888899999999999 56789999999999999998


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH-HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR-VAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      ...+....+..|+++.|+.+|.+.+  ++..++.+|.+|+...+.+ ..+++.|+++.|+.+|..   .+..+++.|+.+
T Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~  309 (528)
T 4b8j_A          233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRT  309 (528)
T ss_dssp             SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHH
Confidence            7655555666899999999998754  8999999999999876665 566789999999999988   458999999999


Q ss_pred             HHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-CHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVG-SEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |.+|+.++......+.+.|+++.|+.++.++ ++.+++.|.++|.+|+.....     ..+.+++.|++...
T Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-----~~~~~~~~~~i~~L  376 (528)
T 4b8j_A          310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-----QIQAVINAGIIGPL  376 (528)
T ss_dssp             HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-----HHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-----HHHHHHHCCCHHHH
Confidence            9999998877788888899999999999999 999999999999999874321     23344555555443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=2e-24  Score=211.37  Aligned_cols=235  Identities=22%  Similarity=0.282  Sum_probs=214.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~  304 (546)
                      ...++.++..|++++.++|..|+..|+++...++.++..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +++++.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3457899999999999999999999987666677889999999999999999999999999999999999998 578999


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh-hHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-c
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK-TAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-K  382 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~  382 (546)
                      .+.+.|+++.|+.+|++++++++..|+.+|.+|+..++.+ ..+.+.|+++.|+++|.+++..++..|+++|.+|+.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999999999998887 7888899999999999999999999999999999984 5


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLY  459 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~  459 (546)
                      +++..+++.|+++.|+++|.+++  +++.|+.+|.||+. .++.+..+.+.|+++.|++++.+   .++.+++.|+.+|.
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~~L~  247 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALE  247 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence            67778888999999999998754  89999999999995 56678888899999999999988   45799999999999


Q ss_pred             HHhc
Q 009036          460 ALSH  463 (546)
Q Consensus       460 ~L~~  463 (546)
                      +|+.
T Consensus       248 ~l~~  251 (252)
T 4db8_A          248 KLQS  251 (252)
T ss_dssp             TTC-
T ss_pred             HHhc
Confidence            9874

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.92  E-value=1.1e-23  Score=229.30  Aligned_cols=300  Identities=18%  Similarity=0.186  Sum_probs=254.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC-----HHHHHHHHHHHHHhhcCC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY-----TNVQVNAVAALVNLSLEK  300 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~~  300 (546)
                      .++++.|+..|.+++.++++.|++.|.+++.+++.+|..+.+.|+++.|+.+|...+     ..+...++++|.+++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            578999999999999999999999999999999999999999999999999997643     457788999999999875


Q ss_pred             chHHH-HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          301 INKML-IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       301 ~nk~~-i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      ..... ....++++.|+.+|.+++++++..|+++|.+|+...+. ...+...|+++.|+.+|.+.+..++..|+.+|.||
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            43332 33457899999999999999999999999999987644 56667789999999999999999999999999999


Q ss_pred             hc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHH
Q 009036          379 SL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESC  454 (546)
Q Consensus       379 s~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~A  454 (546)
                      +. .+.++..+++.|+++.|+.+|.+++  +++.|+++|.||+.. ++.+..+.+.|+++.|+.+|.+   .+.+++..|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~A  397 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKAA  397 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC---CCHHHHHHH
Confidence            87 4567788889999999999998754  899999999999974 4556777899999999999998   468999999


Q ss_pred             HHHHHHHhc-CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCCh-HHHHhcCCcccc
Q 009036          455 VSVLYALSH-GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDW-DELLDSGLVSRS  528 (546)
Q Consensus       455 v~~L~~L~~-~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~-~~~~~~~~~~~~  528 (546)
                      +++|.+++. .+.+....+.+.|+++.|+.++...++++...+..+|.++....+...+...+ ..+.+.|++...
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i  473 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI  473 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH
Confidence            999999987 45566677889999999999999999999999999999987654332222122 235567776655

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=3.1e-23  Score=224.45  Aligned_cols=300  Identities=18%  Similarity=0.216  Sum_probs=253.7

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCch
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      ..+.++.|+..|++.++.+|..|+..|.+++... .++..+. ..|+++.|+.+|.+. +.+++..|+.+|.+|+.++++
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence            3578999999999999999999999999999864 4665555 459999999999754 899999999999999999889


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-  380 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-  380 (546)
                      +..+.+.|+++.|+.+|++++++++..|+.+|.+|+..+ +.+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. 
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999874 567788889999999999999999999999999999997 


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--------------
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG--------------  443 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~--------------  443 (546)
                      +++++..+++.|+++.|+.+|.+++   ..+.++.+|.+|+.+++++..+++.|+++.|+.++.+.              
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            4688999999999999999998643   67789999999999999999999888887777666542              


Q ss_pred             ----------------------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHH
Q 009036          444 ----------------------TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRM  499 (546)
Q Consensus       444 ----------------------~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~l  499 (546)
                                            ...++.+++.|+.+|.+|+.++...+..+.+.|+++.|+.++.+.  ++.+++.|..+
T Consensus       254 l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence                                  114577888899999999887777888888999999999998763  47999999999


Q ss_pred             HHHhhcCCccccccCCh-HHHHhcCCcccc
Q 009036          500 LELMKGRAEEEEEGVDW-DELLDSGLVSRS  528 (546)
Q Consensus       500 L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~  528 (546)
                      |.+|+......+   .| ..+.+.|+++..
T Consensus       334 L~nl~~~~~~~~---~~~~~i~~~~~i~~L  360 (529)
T 1jdh_A          334 LRHLTSRHQEAE---MAQNAVRLHYGLPVV  360 (529)
T ss_dssp             HHHHTSSSTTHH---HHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCchHH---HHHHHHHHcCChhHH
Confidence            999986533211   12 346666766554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=1.1e-22  Score=221.42  Aligned_cols=279  Identities=15%  Similarity=0.137  Sum_probs=249.8

Q ss_pred             chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036          226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      .+.++.|+..|.+. ++++|..|++.|.+++..++..+..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ +.++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            46789999999887 899999999999999998888999999999999999999999999999999999999986 5788


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-  381 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-  381 (546)
                      ..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.+++..++..|+++|.+|+.. 
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            88889999999999999999999999999999999775 4444555678999999999999999999999999999975 


Q ss_pred             chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          382 KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      ++....+++.|+++.|+.+|.+.+  ++..|+.+|.+|+.. ++....+++.|+++.|+.+|.+   .+..++..|+.+|
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL  365 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTI  365 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHH
Confidence            456777888899999999998754  889999999999965 4556677789999999999988   4589999999999


Q ss_pred             HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+++.++......+.+.|+++.|+.++.++++.++..|.++|..|+...
T Consensus       366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            9999877666666778899999999999999999999999999998653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=6.8e-23  Score=222.93  Aligned_cols=295  Identities=18%  Similarity=0.193  Sum_probs=254.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-ChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-Cch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRS-REETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ...++.++..|++++++.|..|+..|+.+... ....+..+.+.|+++.|+.+|.++ ++.++..|+++|.+++.. +++
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            35689999999999999999999999998654 345667788999999999999987 899999999999999986 567


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      +..+++.|+++.|+.+|.+++++++..|+++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence            888889999999999999999999999999999999874 6788888899999999999999999999999999999986


Q ss_pred             c-hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          382 K-SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       382 ~-~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      . .........|+++.|+.+|.+.+  ++..++.+|.+|+.. ++.+..+++.|+++.|+.+|.+   .+..+++.|+.+
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~  322 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA  322 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHH
Confidence            5 55556667899999999998754  889999999999975 4567778889999999999987   468999999999


Q ss_pred             HHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |.+++.++......+.+.|+++.|+.++.++++.+++.|.++|..|+.....     ..+.+++.|+++..
T Consensus       323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-----~~~~~~~~~~l~~L  388 (530)
T 1wa5_B          323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-----QIQAVIDANLIPPL  388 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----HHHHHHHCCCHHHH
Confidence            9999998777777788889999999999999999999999999999975321     12344455555443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=1.6e-23  Score=204.84  Aligned_cols=234  Identities=22%  Similarity=0.316  Sum_probs=213.7

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccc-ccchhhH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTA  346 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~  346 (546)
                      ...+.++.+|.+++++++..|+.+|.++.. +++++..+.+.|+++.|+.+|++++++++..|+.+|.+|+. .++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            468999999999999999999999976544 67788889999999999999999999999999999999998 4678888


Q ss_pred             HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cc
Q 009036          347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SD  422 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e  422 (546)
                      +.+.|+++.|+.+|+++++.++..|+++|.+|+...+++ ..+++.|+++.|+++|.+++  +++.|+.+|.||+.. ++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            899999999999999999999999999999999998888 88899999999999998765  899999999999974 46


Q ss_pred             cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009036          423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLEL  502 (546)
Q Consensus       423 ~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~  502 (546)
                      .+..+.+.|+++.|+++|.+   .++.+++.|+.+|.+|+..++..+..+.+.|+++.|+.++.++++.+++.|..+|.+
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            67777889999999999998   468999999999999998887888888899999999999999999999999999999


Q ss_pred             hhc
Q 009036          503 MKG  505 (546)
Q Consensus       503 L~~  505 (546)
                      |+.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=225.65  Aligned_cols=282  Identities=18%  Similarity=0.239  Sum_probs=247.2

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCch
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      ..+.++.|+..|++.++.+|..|+..|.+++.... ++..+.. .|+++.|+.+|.+. +.+++..|+.+|.+|+.++++
T Consensus        12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~   90 (644)
T 2z6h_A           12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   90 (644)
T ss_dssp             CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence            35779999999999999999999999999998764 6666665 59999999999865 899999999999999999889


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-  380 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-  380 (546)
                      +..+.+.|+++.|+.+|+++++.++..|+.+|.+|+... ..+..+.+.|+++.|+.+|++++.+++..++.+|.+|+. 
T Consensus        91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999875 567777889999999999999999998889999999997 


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccC--------------
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKG--------------  443 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~--------------  443 (546)
                      ..+++..+++.|+++.|+.+|.+.+   .++.++.+|.||+.+++++..+++.|+++.|+.++...              
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            7789999999999999999998753   77889999999999999999999999888877665431              


Q ss_pred             ----------------------CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcC-C-HHHHHHHHHH
Q 009036          444 ----------------------TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVG-S-EHVKEKAKRM  499 (546)
Q Consensus       444 ----------------------~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~-s-~~~k~~A~~l  499 (546)
                                            ...+..+++.|+.+|.+|+..+...+..+.+.|+++.|+.++.+. + +.+++.|..+
T Consensus       251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence                                  013577888888888888887777788888899999999998864 3 7999999999


Q ss_pred             HHHhhcCC
Q 009036          500 LELMKGRA  507 (546)
Q Consensus       500 L~~L~~~~  507 (546)
                      |.+|+...
T Consensus       331 L~nL~~~~  338 (644)
T 2z6h_A          331 LRHLTSRH  338 (644)
T ss_dssp             HHHHTSSS
T ss_pred             HHHHhcCC
Confidence            99998643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=4.7e-22  Score=210.52  Aligned_cols=276  Identities=17%  Similarity=0.188  Sum_probs=244.8

Q ss_pred             hhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          227 EQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       227 ~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      +.++.|++.|++. ++++|..|++.|.+++..+.+++..+.+.|+++.|+.+|.++++.+++.|+.+|.+|+.+ +.++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            6789999999888 899999999999999998888888888999999999999999999999999999999987 46788


Q ss_pred             HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          305 LIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      .+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+...  ..+..+ ..++++.|+.+|.+++..++..++++|.+|+..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            88899999999999996 68999999999999999764  222222 278999999999999999999999999999985


Q ss_pred             -chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcc-cHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          382 -KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSD-GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       382 -~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e-~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                       .+++..++..|+++.|+.+|.+.+  ++..|+.+|.+|+...+ .+..+++.|+++.|+.+|.+   .+..++..|+.+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~  299 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWT  299 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHH
Confidence             466778888899999999998654  89999999999997654 45567788999999999988   468999999999


Q ss_pred             HHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      |.+++.++......+.+.|+++.|+.++.++++.+|..|.++|..|+..
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999987766777777789999999999999999999999999999864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=1.3e-21  Score=207.09  Aligned_cols=279  Identities=17%  Similarity=0.150  Sum_probs=244.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCC--ch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEK--IN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~--~n  302 (546)
                      .+.++.|+..|+++++++|..|++.|.+++..++..+..+.+.|+++.|+.++.+ .+..++..|+++|.+|+.+.  ..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            4678999999999999999999999999999988899999999999999999995 78999999999999999753  33


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      +..+. .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.+..++..|+++|.+|+..
T Consensus       186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  264 (450)
T 2jdq_A          186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG  264 (450)
T ss_dssp             CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence            33333 689999999999999999999999999999864 5566677789999999999999999999999999999986


Q ss_pred             ch-hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          382 KS-NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       382 ~~-n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      .+ .+..+++.|+++.|+.+|.+++  ++..|+.+|.||+. +++....+++.|+++.|+.+|.+   .++.++..|+.+
T Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~  341 (450)
T 2jdq_A          265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWA  341 (450)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHH
T ss_pred             ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHH
Confidence            54 4556778899999999998754  89999999999996 56677788889999999999998   468999999999


Q ss_pred             HHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          458 LYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       458 L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      |.+++.+ +......+.+.|+++.|+.++.++++++++.|..+|..|....+
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            9999974 54555556678999999999999999999999999999987544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=195.44  Aligned_cols=193  Identities=21%  Similarity=0.221  Sum_probs=175.0

Q ss_pred             hhHHHHHHhcCCCCH--HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchH
Q 009036          227 EQEDYFVQKLKSPQV--HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINK  303 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk  303 (546)
                      -+++.+|+.|.++++  +.|..|+..|++++..++.+|..+.+.|+||.|+.+|.+++.++|+.|+++|.||+. +++||
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            468999999999988  889999999999999999999999999999999999999999999999999999998 47999


Q ss_pred             HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc----------------cCCHH
Q 009036          304 MLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK----------------SDSER  366 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~----------------~~~~~  366 (546)
                      ..|++.|+|+.|+.+|+ +++.+++++|+.+|++|+..+++|..|.+. ++++|+.++.                ..+.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 479999999999999999999999999874 6999998763                12668


Q ss_pred             HHHHHHHHHHHhhcC-chhHHHHHhc-CcHHHHHHHHhCc--------hHHHHHHHHHHHhhCC
Q 009036          367 TQHDSALALYHLSLV-KSNRTKLVKL-GSVNALLGMVNSG--------HMTGRVLLILGNLASC  420 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~-~~n~~~iv~~-Gav~~Lv~lL~~~--------~~~e~al~~L~nLa~~  420 (546)
                      ++.+|..+|+||+.. .++|..|.+. |+|+.|+.++...        ..+|.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999999999984 5899999987 8899999999752        2789999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.89  E-value=1.1e-21  Score=212.21  Aligned_cols=294  Identities=18%  Similarity=0.166  Sum_probs=252.6

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      .+.++.|++.|++++++.+..|+..|.+++..++..+..+.+.|+++.|+.+|.+++.+++..++.+|.+++.. ++++.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46789999999999999999999999999998888899999999999999999999999999999999999985 78899


Q ss_pred             HHHhcCChHHHHHHHccCC-HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          305 LIVRSGLVPPIVDVLMAGS-AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      .+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++++++..++++|.+|+....
T Consensus       180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            9999999999999999874 566778899999999988999999999999999999999999999999999999998653


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      ...  ...|+++.|+++|.+.+  +++.++.+|.+|+.. ++++..+.+.|+++.|+++|.... .++.+++.|+.+|.+
T Consensus       260 ~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          260 KQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALRH  336 (529)
T ss_dssp             TCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             hhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            321  22388999999998654  899999999999985 468999999999999999998632 247899999999999


Q ss_pred             HhcCCh---hhHHHHHHCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          461 LSHGGL---RFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       461 L~~~~~---~~~~~~~~~g~v~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |+.++.   ..+..+...|+++.|+.++.+++ +.+++.|.++|.+++.....      .+.+.+.|+++..
T Consensus       337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~~i~~L  402 (529)
T 1jdh_A          337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------HAPLREQGAIPRL  402 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG------HHHHHHTTHHHHH
T ss_pred             HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh------hHHHHHcCCHHHH
Confidence            988543   25667888899999999999886 59999999999999964321      2456666666544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=195.20  Aligned_cols=194  Identities=21%  Similarity=0.261  Sum_probs=172.6

Q ss_pred             hHHHHHHHHccCCH--HHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhh
Q 009036          270 LLLALRSLIISRYT--NVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKT  345 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~--~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~  345 (546)
                      .++.|+.+|.++++  ++|..|+..|.+|+. ++.++..|++.|+||.|+.+|++++++++..|+++|.+|+.. +++|.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999887  899999999999997 578999999999999999999999999999999999999985 68999


Q ss_pred             HHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHh------------------CchH
Q 009036          346 AIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN------------------SGHM  406 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~------------------~~~~  406 (546)
                      .|.+.|+|+.|+++|++ ++.++++.|+.+|+||+..+++|..+++. +++.|++++.                  +..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            99999999999999984 78999999999999999999999999975 7999998663                  1248


Q ss_pred             HHHHHHHHHHhhC-CcccHHHHHhC-CcHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC
Q 009036          407 TGRVLLILGNLAS-CSDGRVAVLDS-GGVECLVGMLRKG---TELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       407 ~e~al~~L~nLa~-~~e~r~~i~~~-g~i~~Lv~lL~~~---~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      .++|.++|.||+. ++++|..|.+. |+|+.|+.+++.+   ...+.+.+|+|+.+|++||..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            8999999999987 56999999985 6789999999873   223568899999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=3.8e-21  Score=214.27  Aligned_cols=294  Identities=18%  Similarity=0.161  Sum_probs=253.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~  304 (546)
                      .+.++.|++.|++++.++|..|+..|.+++...+..+..+.+.|+++.|+.+|.+++..++..++.+|.+|+. +++++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  176 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  176 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4688999999999999999999999999999888888899999999999999999999999999999999997 678999


Q ss_pred             HHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          305 LIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      .+.+.|+++.|+.+|++. ...++..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.+|+....
T Consensus       177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            999999999999999987 4678889999999999988999999999999999999999999999999999999997543


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      ..  ....|+++.|+.+|.+.+  +++.++.+|.+|+.. ++++..+.+.|+++.|+.+|.... ..+.+++.|+.+|.+
T Consensus       257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~~~v~~~a~~aL~n  333 (644)
T 2z6h_A          257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALRH  333 (644)
T ss_dssp             TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-CcHHHHHHHHHHHHH
Confidence            22  122378999999998654  899999999999985 467888899999999999998731 236899999999999


Q ss_pred             HhcCCh---hhHHHHHHCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhhcCCccccccCChHHHHhcCCcccc
Q 009036          461 LSHGGL---RFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELMKGRAEEEEEGVDWDELLDSGLVSRS  528 (546)
Q Consensus       461 L~~~~~---~~~~~~~~~g~v~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~~~~~~~~~~~~~~~~~~~~~~  528 (546)
                      |+....   ..+..+...|+++.|+.++.+.+ +.+++.|.++|.+|+.....      .+.+.+.|++...
T Consensus       334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~------~~~i~~~~~i~~L  399 (644)
T 2z6h_A          334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------HAPLREQGAIPRL  399 (644)
T ss_dssp             HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG------HHHHHHTTHHHHH
T ss_pred             HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH------HHHHHHcCCHHHH
Confidence            987432   34556778899999999999875 69999999999999875321      2556677766654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=3.8e-21  Score=218.67  Aligned_cols=281  Identities=19%  Similarity=0.259  Sum_probs=243.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      .+.++.|+..|.+.+..+|..|+..|.+++... .++..+.+ .|+++.|+.+|.+. +.+++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            467899999999999999999999999999864 46666664 58999999999865 9999999999999999998899


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-C
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-V  381 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~  381 (546)
                      ..+.+.|+++.|+.+|+++++.++..|+.+|.+|+... +.+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999874 567777789999999999999999999999999999997 5


Q ss_pred             chhHHHHHhcCcHHHHHHHHhCch---HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC--------------
Q 009036          382 KSNRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT--------------  444 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~~~---~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~--------------  444 (546)
                      .+++..+++.|+++.|+.+|.+++   ..+.++.+|.+|+.+++++..+++.|+++.|+.+|.+..              
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  387 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            788999999999999999998754   667899999999999999999988887777766554310              


Q ss_pred             ----------------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CC-HHHHHHHHHHH
Q 009036          445 ----------------------ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERV-GS-EHVKEKAKRML  500 (546)
Q Consensus       445 ----------------------~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s-~~~k~~A~~lL  500 (546)
                                            ..+..+++.|+.+|.+|+.++...+..+.+.|+++.|+.++.+ ++ +.+++.|..+|
T Consensus       388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence                                  1457788888889999988777778888889999999999876 33 48999999999


Q ss_pred             HHhhcCC
Q 009036          501 ELMKGRA  507 (546)
Q Consensus       501 ~~L~~~~  507 (546)
                      .+|+...
T Consensus       468 ~nL~~~~  474 (780)
T 2z6g_A          468 RHLTSRH  474 (780)
T ss_dssp             HHTTSSS
T ss_pred             HHHHhcC
Confidence            9998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=5.3e-21  Score=217.48  Aligned_cols=276  Identities=22%  Similarity=0.224  Sum_probs=241.7

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      .+.++.|+..|.+.+.+.+..|+..|.+++.....   .....++++.|+.+|.+.+..++..|+.+|.+|+.. ++++.
T Consensus       359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~  435 (780)
T 2z6g_A          359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM  435 (780)
T ss_dssp             TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            35678889999988999999999999999976532   223457999999999999999999999999999986 47888


Q ss_pred             HHHhcCChHHHHHHHcc-C-CHHHHHHHHHHHhhccccc-c---hhhHHhhcCChHHHHHhhccCC-HHHHHHHHHHHHH
Q 009036          305 LIVRSGLVPPIVDVLMA-G-SAEAQEHACGAIFSLALDD-Q---NKTAIGVLGALPPLLHLLKSDS-ERTQHDSALALYH  377 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~-~-~~~~~~~Aa~~L~~Ls~~~-~---~k~~i~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~~  377 (546)
                      .+.+.|+++.|+.+|.+ + ..+++..|+.+|.+|+... +   .+..+...|+++.|+.+|.+++ ..+++.|+++|.|
T Consensus       436 ~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~n  515 (780)
T 2z6g_A          436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN  515 (780)
T ss_dssp             HHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            88999999999999986 3 3599999999999998754 2   2557777899999999999875 4899999999999


Q ss_pred             hhcCchhHHHHHhcCcHHHHHHHHhCch------------------------HHHHHHHHHHHhhCCcccHHHHHhCCcH
Q 009036          378 LSLVKSNRTKLVKLGSVNALLGMVNSGH------------------------MTGRVLLILGNLASCSDGRVAVLDSGGV  433 (546)
Q Consensus       378 Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~------------------------~~e~al~~L~nLa~~~e~r~~i~~~g~i  433 (546)
                      |+....++..+++.|+++.|+++|.+++                        +++.++.+|.+|+..++++..+.+.|++
T Consensus       516 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i  595 (780)
T 2z6g_A          516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI  595 (780)
T ss_dssp             HHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCH
T ss_pred             HhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcH
Confidence            9999999999999999999999996532                        5678999999999999999999999999


Q ss_pred             HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          434 ECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       434 ~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      +.|+.+|.+   .++.++..|+.+|.+|+.. ...+..+.+.|+++.|+.++.+.++.+++.|..+|..|....+
T Consensus       596 ~~Lv~lL~~---~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          596 PLFVQLLYS---PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHGGGC---SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHcC---CCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            999999998   4689999999999999854 5678888999999999999999999999999999999997654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.87  E-value=1.6e-22  Score=168.68  Aligned_cols=79  Identities=25%  Similarity=0.359  Sum_probs=72.0

Q ss_pred             CCCCCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           37 PQTAEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        37 ~~~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      .....+|++|.||||+++|+|||+++|| |||||.||++|+.. +..||.|++++...+|+||+.|+++|+.|+.+|++.
T Consensus        14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            3345789999999999999999999999 99999999999985 568999999999999999999999999999999865


Q ss_pred             C
Q 009036          116 P  116 (546)
Q Consensus       116 ~  116 (546)
                      .
T Consensus        93 ~   93 (98)
T 1wgm_A           93 S   93 (98)
T ss_dssp             S
T ss_pred             h
Confidence            4

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=1e-20  Score=179.73  Aligned_cols=195  Identities=22%  Similarity=0.286  Sum_probs=178.5

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~  304 (546)
                      .+..+.|+..|++.+++++..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.++..|+.+|.||+. ++.++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            4567889999999999999999999999999899999999999999999999999999999999999999996 568889


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-c
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-K  382 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~  382 (546)
                      .+.+.|+++.|+.+|+++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|++++.+++..|+++|.+|+.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999765 4566777899999999999999999999999999999986 7


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC  420 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~  420 (546)
                      +++..+++.|+++.|++++.+++  +++.|+.+|.+|+.+
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            78888999999999999998754  899999999999863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.8e-20  Score=206.61  Aligned_cols=284  Identities=13%  Similarity=0.121  Sum_probs=229.6

Q ss_pred             chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCh--------------------------------------hhhHHhh
Q 009036          226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSRE--------------------------------------ETRVSLC  266 (546)
Q Consensus       226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~--------------------------------------~~r~~l~  266 (546)
                      .+.++.|+..++. .+....-.++..|.+++...+                                      .++..+.
T Consensus       375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~  454 (778)
T 3opb_A          375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL  454 (778)
T ss_dssp             HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence            3456777777763 555566667777777665211                                      1677888


Q ss_pred             cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHH---HHHHHHHHHhhcccccch
Q 009036          267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAE---AQEHACGAIFSLALDDQN  343 (546)
Q Consensus       267 ~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~---~~~~Aa~~L~~Ls~~~~~  343 (546)
                      ++|+|+.|+.++.++++.+++.|+++|.||+.++++|..+++.|+++.|+.+|.++...   .+..|+.+|.+|....+.
T Consensus       455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999999999999999999999999999999999988654   899999999999877666


Q ss_pred             hhHHhh---cCChHHHHHhhcc--CCH------------HHHHHHHHHHHHhhcCc-----hhHHHHHhc-CcHHHHHHH
Q 009036          344 KTAIGV---LGALPPLLHLLKS--DSE------------RTQHDSALALYHLSLVK-----SNRTKLVKL-GSVNALLGM  400 (546)
Q Consensus       344 k~~i~~---~g~l~~Lv~lL~~--~~~------------~~~~~A~~aL~~Ls~~~-----~n~~~iv~~-Gav~~Lv~l  400 (546)
                      ...+..   .|++++|+.+|..  +..            --+.+|+.||.||+..+     +.|.++++. |+++.|.++
T Consensus       535 ~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L  614 (778)
T 3opb_A          535 GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL  614 (778)
T ss_dssp             HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred             HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence            655532   4899999999983  211            23679999999999976     348889996 999999999


Q ss_pred             HhCch--HHHHHHHHHHHhhCCcccH-HHHHhCC------cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009036          401 VNSGH--MTGRVLLILGNLASCSDGR-VAVLDSG------GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGL  471 (546)
Q Consensus       401 L~~~~--~~e~al~~L~nLa~~~e~r-~~i~~~g------~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~  471 (546)
                      |.+.+  ++..|+.+|+||+.+++++ ..+.+.+      .++.||.++..   .+.+.+..|.++|.+++...+.....
T Consensus       615 L~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~  691 (778)
T 3opb_A          615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKE  691 (778)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHH
Confidence            98754  8999999999999999886 3554322      37889999977   57999999999999998766555554


Q ss_pred             HHH-CCcHHHHHHHHhc--CCHHHHHHHHHHHHHhhcCCccccc
Q 009036          472 AAA-AGMAEVLMRMERV--GSEHVKEKAKRMLELMKGRAEEEEE  512 (546)
Q Consensus       472 ~~~-~g~v~~L~~ll~~--~s~~~k~~A~~lL~~L~~~~~~~~~  512 (546)
                      +.+ .++++.|+.++++  .++.++..+..+|.+|.....++.+
T Consensus       692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~  735 (778)
T 3opb_A          692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGT  735 (778)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTT
T ss_pred             HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence            444 4799999999999  8999999999999999986554443

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.86  E-value=3.8e-22  Score=167.03  Aligned_cols=75  Identities=25%  Similarity=0.344  Sum_probs=69.9

Q ss_pred             CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      ...+|++|.||||+++|+|||+++|||||||.||++|+. ++..||.|++++...+|+||+.|+++|+.|+.+|+.
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   97 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN   97 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence            357899999999999999999999999999999999998 456899999999999999999999999999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.86  E-value=2.8e-22  Score=162.97  Aligned_cols=73  Identities=25%  Similarity=0.349  Sum_probs=68.5

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQS  113 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~  113 (546)
                      ..+|++|.||||+++|+|||+++|||||||.||++|+.. +..||.|++++...+|+||+.|+++|+.|+.+|+
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999999984 5689999999998899999999999999998875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.85  E-value=4.6e-20  Score=175.26  Aligned_cols=195  Identities=24%  Similarity=0.344  Sum_probs=176.5

Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhH
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNR  385 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~  385 (546)
                      ..+..+.|+.+|++.+++++..|+++|.+|+.. ++.+..+.+.|+++.|+.+|.++++.++..|+++|.+|+. .++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            357899999999999999999999999999954 5678888889999999999999999999999999999996 66788


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                      ..+++.|+++.|+.+|.+++  +++.|+.+|.||+. .++.+..+++.|+++.|+++|.+   .+..+++.|+.+|.+++
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence            99999999999999998765  89999999999996 45566778899999999999998   46899999999999999


Q ss_pred             cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      ..++..+..+.+.|+++.|+.++.++++.+++.|..+|..|++
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9878888889999999999999999999999999999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.84  E-value=1.7e-21  Score=178.77  Aligned_cols=77  Identities=23%  Similarity=0.229  Sum_probs=71.7

Q ss_pred             CCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      ...+|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+|+||+.|+++|+.|+..|++.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            45789999999999999999999999999999999999865447999999999889999999999999999999975

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.81  E-value=2.1e-20  Score=149.67  Aligned_cols=76  Identities=36%  Similarity=0.578  Sum_probs=71.5

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      ..+|++|.||||+++|+|||+++|||+||+.||.+|++.+...||.|+..+...++.||+.|+++|+.|..+|+++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~   78 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999999999877789999999998889999999999999999999863

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.79  E-value=5.6e-18  Score=170.21  Aligned_cols=221  Identities=18%  Similarity=0.179  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhh
Q 009036          283 TNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLL  360 (546)
Q Consensus       283 ~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL  360 (546)
                      .+.+..|+..|.++..+.+|...+.+.|+++.|+. +|.+++++++..|+++|.+++.++ ..+..+.+.|+++.|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            45677889999999998889999999999999999 999999999999999999999865 5688888899999999999


Q ss_pred             ccC-CHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHH
Q 009036          361 KSD-SERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVEC  435 (546)
Q Consensus       361 ~~~-~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~  435 (546)
                      +++ +..+++.|+++|.||+.. +.....+++.|+++.|+.+|.+++  ++..|+++|.+|+. .++.+..+++.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            964 889999999999999985 455678888999999999998765  89999999999986 5778899999999999


Q ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHC--CcHHHH---HHHHh-cC-CHHHHHHHHHHHHHhhcC
Q 009036          436 LVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAA--GMAEVL---MRMER-VG-SEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~--g~v~~L---~~ll~-~~-s~~~k~~A~~lL~~L~~~  506 (546)
                      |+.+|..   .+..+++.|+.+|.+|+.+.......+...  .....|   .+-++ .. +.++.++|..+|..+...
T Consensus       214 Lv~LL~~---~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~  288 (296)
T 1xqr_A          214 LVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS  288 (296)
T ss_dssp             HHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHcC---CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence            9999998   457899999999999998754433333321  122222   22344 22 578899999999988854

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.6e-18  Score=188.37  Aligned_cols=275  Identities=14%  Similarity=0.170  Sum_probs=225.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCc---
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKI---  301 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~---  301 (546)
                      ...+.+++.|..++.+.+..|++.|..++.. +..|..+++ .|++..|+.++.. .+..+...++.+|.||+...+   
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            4567788888887888899999999999885 466777775 6779999999985 788899999999999987321   


Q ss_pred             ------------------------------------hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhh
Q 009036          302 ------------------------------------NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKT  345 (546)
Q Consensus       302 ------------------------------------nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~  345 (546)
                                                          ++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++|.
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~  492 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP  492 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence                                                45566788999999999999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHhhccCCHH---HHHHHHHHHHHhhcCchhHHHHH--h-cCcHHHHHHHHhC-ch-------------
Q 009036          346 AIGVLGALPPLLHLLKSDSER---TQHDSALALYHLSLVKSNRTKLV--K-LGSVNALLGMVNS-GH-------------  405 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~~~~~---~~~~A~~aL~~Ls~~~~n~~~iv--~-~Gav~~Lv~lL~~-~~-------------  405 (546)
                      .+.+.|+++.|+.+|.+++..   ++..|+.+|.+|+...+....+-  . .|+|+.|+++|.. +.             
T Consensus       493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~  572 (778)
T 3opb_A          493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK  572 (778)
T ss_dssp             HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred             HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence            999999999999999987544   88999999999986544333221  1 3999999999982 11             


Q ss_pred             --HHHHHHHHHHHhhCCc-----ccHHHHHhC-CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhh-HHHHH---
Q 009036          406 --MTGRVLLILGNLASCS-----DGRVAVLDS-GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRF-KGLAA---  473 (546)
Q Consensus       406 --~~e~al~~L~nLa~~~-----e~r~~i~~~-g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~-~~~~~---  473 (546)
                        -+..|+.+|.|||..+     +.|..++++ |+++.|..+|.+   .+..++..|+.++++|+...... ...+.   
T Consensus       573 ~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~  649 (778)
T 3opb_A          573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLEN  649 (778)
T ss_dssp             HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred             HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence              1668999999999986     347888886 999999999998   46899999999999999865432 23321   


Q ss_pred             --HCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          474 --AAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       474 --~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                        ..+.++.|+.|+..++.++|+.|.++|.+++.
T Consensus       650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence              11247899999999999999999999999964

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.78  E-value=1e-19  Score=181.68  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=72.5

Q ss_pred             CCCCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           38 QTAEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        38 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      ...++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||+.|+++|+.||..|++.
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            346789999999999999999999999999999999999876666999999999889999999999999999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2e-19  Score=149.17  Aligned_cols=76  Identities=24%  Similarity=0.248  Sum_probs=65.7

Q ss_pred             CCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLG-----FTPTLV--DGTT-PDFSTVIPNLALKSTILNWCHK  111 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-----~~~cp~--~~~~-~~~~~l~pn~~l~~~i~~~~~~  111 (546)
                      ..+++|.||||+++|+|||+++ |||+|||.||++||..+     ...||.  |+.. +...+|+||+.|+++|+.|+..
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3578999999999999999996 99999999999999753     348999  5544 7788999999999999999998


Q ss_pred             cCCCC
Q 009036          112 QSLNP  116 (546)
Q Consensus       112 ~~~~~  116 (546)
                      ++...
T Consensus        83 ~~r~~   87 (94)
T 2yu4_A           83 RHRHS   87 (94)
T ss_dssp             CCSCC
T ss_pred             hcccc
Confidence            87433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.77  E-value=3.7e-17  Score=164.22  Aligned_cols=234  Identities=19%  Similarity=0.210  Sum_probs=186.0

Q ss_pred             hhHHHHHHhcCCC------------CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHH
Q 009036          227 EQEDYFVQKLKSP------------QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAAL  293 (546)
Q Consensus       227 ~~i~~lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L  293 (546)
                      ..++..+..|.+.            +.+.+..|+..|..+... ..+...+.+.|+++.|+. +|.++++.+++.|+++|
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3456677777654            346788899999999984 458888899999999999 99999999999999999


Q ss_pred             HHhhcC-CchHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHH
Q 009036          294 VNLSLE-KINKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHD  370 (546)
Q Consensus       294 ~nLs~~-~~nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~  370 (546)
                      .+++.+ +..+..+++.|+++.|+.+|++. +..++..|+++|.+|+... .....+...|+++.|+.+|++++..+++.
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~  186 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK  186 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence            999986 67888999999999999999965 8999999999999998765 45667777899999999999999999999


Q ss_pred             HHHHHHHhhc-CchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc-ccHHHHHhC-CcHHHH----HHHHc
Q 009036          371 SALALYHLSL-VKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS-DGRVAVLDS-GGVECL----VGMLR  441 (546)
Q Consensus       371 A~~aL~~Ls~-~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~-e~r~~i~~~-g~i~~L----v~lL~  441 (546)
                      |+++|.+|+. .++.+..+++.|+++.|+.+|.+++  +++.++.+|.||+... ..+..+... ..+..+    .+.+.
T Consensus       187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq  266 (296)
T 1xqr_A          187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ  266 (296)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence            9999999987 5678999999999999999998755  9999999999999863 222222221 112222    22233


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 009036          442 KGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       442 ~~~~~s~~~~e~Av~~L~~L~  462 (546)
                      ..+ .+.+..+.|..+|-.+.
T Consensus       267 ~~e-~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          267 QHE-EYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             TCG-GGHHHHHHHHHHHHHHC
T ss_pred             chH-HHHHHHHHHHHHHHHHc
Confidence            211 13566677766666554

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=131.42  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=68.0

Q ss_pred             CCCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcCC
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTL-GFTPTLVDGTTP-DFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~-~~~~cp~~~~~~-~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      ...++++|.||||+++|.|||+++ |||+||+.||.+|+.. +...||.|+..+ ....+.||..++++|+.|...++.
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            356789999999999999999999 9999999999999975 456899999986 566899999999999999988765

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.60  E-value=1.1e-16  Score=120.96  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=49.8

Q ss_pred             ceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHH
Q 009036           45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLA  100 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~  100 (546)
                      .|.||||+++|+|||++ +|||+|||.||++|++.+ ..||.|++++...+|+||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECcc
Confidence            58999999999999999 999999999999999854 35999999999999999864

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.58  E-value=7.2e-16  Score=171.76  Aligned_cols=74  Identities=22%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             CCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      .++|++|+|||++++|+|||++++| +||||++|++|+.. +.+||.|++++...+++||++||+.|++||..+..
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999998 79999999999986 55899999999999999999999999999998874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.56  E-value=2.5e-13  Score=146.42  Aligned_cols=282  Identities=14%  Similarity=0.147  Sum_probs=221.6

Q ss_pred             chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCC-c
Q 009036          226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEK-I  301 (546)
Q Consensus       226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~-~  301 (546)
                      .++++.|..+|.+. -.++|+.|+..|+.+++..   +.. +-.++++.|+..|..  .|.++...++.+|.++.... +
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            67899999999544 5799999999999999753   333 335679999999975  48899999999998876532 1


Q ss_pred             -----------------hHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc--chhhHHhh-cCChHHHHHhh
Q 009036          302 -----------------NKMLI-VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD--QNKTAIGV-LGALPPLLHLL  360 (546)
Q Consensus       302 -----------------nk~~i-~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~l~~Lv~lL  360 (546)
                                       +.+.+ .+.+.++.|+.+|.+.+..+|.+++.+|..|+...  ..+..|.. .++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             11222 34578999999999999999999999999998765  35777774 79999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhhcCchhHHHHHhc-CcHHHHHHHHhCc------hHHHHHHHHHHHhhCCc-ccHHHHHhCCc
Q 009036          361 KSDSERTQHDSALALYHLSLVKSNRTKLVKL-GSVNALLGMVNSG------HMTGRVLLILGNLASCS-DGRVAVLDSGG  432 (546)
Q Consensus       361 ~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~-Gav~~Lv~lL~~~------~~~e~al~~L~nLa~~~-e~r~~i~~~g~  432 (546)
                      .+....+|.+|+.+|.+|+..+.+.++++.. |+++.|+.++...      .+.+.|+.+|.||.... .++..|.+.|+
T Consensus       176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~  255 (651)
T 3grl_A          176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY  255 (651)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            9999999999999999999988888888888 9999999999752      27899999999999754 58888999999


Q ss_pred             HHHHHHHHccCCC---CCHHHHHH---HHHHHHHHhcCC------hhhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHH
Q 009036          433 VECLVGMLRKGTE---LSESTQES---CVSVLYALSHGG------LRFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKR  498 (546)
Q Consensus       433 i~~Lv~lL~~~~~---~s~~~~e~---Av~~L~~L~~~~------~~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~  498 (546)
                      ++.|..+|.....   .++....+   ++.++..|+..+      ...+..+.+.|++..|++++...  ...++..|..
T Consensus       256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~  335 (651)
T 3grl_A          256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN  335 (651)
T ss_dssp             GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence            9999999875321   11223334   555555566542      24567889999999999997765  6778888888


Q ss_pred             HHHHhhcCCcccc
Q 009036          499 MLELMKGRAEEEE  511 (546)
Q Consensus       499 lL~~L~~~~~~~~  511 (546)
                      ++-.+.+.....+
T Consensus       336 tla~~irgN~~~Q  348 (651)
T 3grl_A          336 TVSEVIRGCQVNQ  348 (651)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHH
Confidence            8877766554433

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.54  E-value=4.2e-15  Score=129.69  Aligned_cols=71  Identities=11%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-STVIPNLALKSTILNWCHK  111 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~~  111 (546)
                      .++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+.. ..+.||..|+++++.|...
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            3467899999999999999999999999999999998666799999999876 6899999999999998643

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.8e-15  Score=143.71  Aligned_cols=70  Identities=11%  Similarity=0.081  Sum_probs=63.3

Q ss_pred             CCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 009036           42 PPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLV--DGTTPDFSTVIPNLALKSTILNWCHK  111 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~--~~~~~~~~~l~pn~~l~~~i~~~~~~  111 (546)
                      ...+|.||||+++|+|||++ .|||+|||.||.+||..+ ..+||+  |++.+...+|+||..|+++|+.|..+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            46889999999999999985 999999999999999764 458999  98999888999999999999999664

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.51  E-value=7.1e-15  Score=132.32  Aligned_cols=69  Identities=16%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFS-TVIPNLALKSTILNWCH  110 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-~l~pn~~l~~~i~~~~~  110 (546)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+... .+.+|..|+++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999999999999999999997666899999998877 89999999999999863

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.44  E-value=6.2e-14  Score=117.19  Aligned_cols=71  Identities=10%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      .+++++.||||++.|.|||++ +|||+||+.||.+|+.. ...||.|+..+...++.||..++++|+.|....
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            356789999999999999998 99999999999999984 458999999988778999999999999997764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=2e-14  Score=116.38  Aligned_cols=66  Identities=24%  Similarity=0.376  Sum_probs=57.7

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC-----CCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG-----FTPTLVDGTTPDFSTVIPNLALKSTI  105 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn~~l~~~i  105 (546)
                      ..+.+++.||||++.|.|||+++|||+||+.||.+|+...     ...||.|+..+...++.||+.++++|
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            4577899999999999999999999999999999999763     55899999999888899998766543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.42  E-value=7.9e-15  Score=117.23  Aligned_cols=66  Identities=24%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC------CCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG------FTPTLVDGTTPDFSTVIPNLALKSTI  105 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~~~~l~pn~~l~~~i  105 (546)
                      ..+.+++.||||++.|.|||+++|||+||+.||.+|++..      ...||.|+..+...++.||+.|++++
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            3567899999999999999999999999999999999753      45899999999888899998776543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.42  E-value=3.2e-14  Score=122.38  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=61.6

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF-------STVIPNLALKSTILNWC  109 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-------~~l~pn~~l~~~i~~~~  109 (546)
                      ...++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+..       .++.+|..|..+|+.|.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            4558899999999999999999999999999999998777789999998753       57788999999999985

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.41  E-value=9.4e-14  Score=118.04  Aligned_cols=68  Identities=12%  Similarity=0.233  Sum_probs=60.9

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFS----TVIPNLALKSTILNWC  109 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~~  109 (546)
                      .+++++.||||+++|.|||++ +|||+||+.||.+|+..+ ..||.|+..+...    .+.+|..+.++++.|.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            467899999999999999998 999999999999999854 6899999987765    6889999999999874

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.8e-13  Score=103.48  Aligned_cols=56  Identities=13%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV   95 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l   95 (546)
                      ..+++++.||||++.|+|||+++|||+||+.||.+|++.+...||.|+..+...++
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            45678999999999999999999999999999999998666789999988776543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3.6e-14  Score=114.86  Aligned_cols=66  Identities=21%  Similarity=0.389  Sum_probs=57.6

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc-----CCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL-----GFTPTLVDGTTPDFSTVIPNLALKSTI  105 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-----~~~~cp~~~~~~~~~~l~pn~~l~~~i  105 (546)
                      ..+.+++.||||++.|+|||+++|||+||+.||.+|+..     +...||.|+..+...++.||+.|+++|
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            457789999999999999999999999999999999875     355899999999888899998766543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.40  E-value=3.1e-11  Score=130.22  Aligned_cols=281  Identities=15%  Similarity=0.125  Sum_probs=220.9

Q ss_pred             chhHHHHHHhcCC--CCHHHHHHHHHHHHHHhccChh-----------------hh-HHhhcCChHHHHHHHHccCCHHH
Q 009036          226 NEQEDYFVQKLKS--PQVHEVEEALISLRKLTRSREE-----------------TR-VSLCTPRLLLALRSLIISRYTNV  285 (546)
Q Consensus       226 ~~~i~~lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~l~~~g~i~~Lv~lL~s~~~~v  285 (546)
                      ..+++.|+..|+.  .|.+....+++.|.++...++.                 +. ..+.+.+.|+.|+.+|.+.+-.+
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v  138 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV  138 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence            4568889998854  4778888899999876654332                 11 12346889999999999999999


Q ss_pred             HHHHHHHHHHhhcC-C-chHHHHHhc-CChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhc
Q 009036          286 QVNAVAALVNLSLE-K-INKMLIVRS-GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLK  361 (546)
Q Consensus       286 ~~~A~~~L~nLs~~-~-~nk~~i~~~-g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~  361 (546)
                      +..++..|..|+.. + .+++.|... ++++.|+.+|++....+|..|+.+|.+|+.++.. +..+.-.|+++.|+.+++
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999875 3 378888854 9999999999999999999999999999988755 666666899999999998


Q ss_pred             cCC----HHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhCch--------HHH---HHHHHHHHhhCC-----
Q 009036          362 SDS----ERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGMVNSGH--------MTG---RVLLILGNLASC-----  420 (546)
Q Consensus       362 ~~~----~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~~~--------~~e---~al~~L~nLa~~-----  420 (546)
                      .+.    ..+...++.+|.||...+ .|+..+.+.|.++.|..+|..+.        ...   .++.++..|+..     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            743    367899999999999854 59999999999999999997431        122   377777777763     


Q ss_pred             --cccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCC---------cHHHHHHHHhc-C
Q 009036          421 --SDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAG---------MAEVLMRMERV-G  488 (546)
Q Consensus       421 --~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g---------~v~~L~~ll~~-~  488 (546)
                        ..++.++.+.|++..|++++.... ....++..|+.++..+..++...+..+....         ++..|+.++.+ .
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~-~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATG-VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence              235778889999999999998743 3578999999999999999988888766532         33444444433 3


Q ss_pred             CHHHHHHHHHHHHHhhcCC
Q 009036          489 SEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       489 s~~~k~~A~~lL~~L~~~~  507 (546)
                      ...+|-.|..+++.+....
T Consensus       378 ~~~lR~Aa~~cl~ay~~~N  396 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFLYKN  396 (651)
T ss_dssp             CHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHhCC
Confidence            5788889999998888655

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.39  E-value=9.2e-14  Score=116.32  Aligned_cols=72  Identities=8%  Similarity=-0.044  Sum_probs=63.9

Q ss_pred             CCCCceeCcccccccCCCee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           41 EPPGEFLCPVSGSLMADPVV-VSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      .+.+++.||||+++|.|||+ ++|||+||+.||.+|+......||.|+..+...++++|..+..+++..-...
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            35588999999999999999 9999999999999999876678999999998889999999988887765543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.39  E-value=2.7e-13  Score=106.84  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=50.2

Q ss_pred             CCCCCCceeCcccccccCCCeecC-CCccccHHHHHHHHhcC-CCCCCCCCCCC-CCCCCccc
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVS-SGHTFERACAHVCKTLG-FTPTLVDGTTP-DFSTVIPN   98 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~-~~~~l~pn   98 (546)
                      ...+++++.||||+++|.|||+++ |||+||+.||.+|+... ...||.|+... ....+.+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            346789999999999999999999 99999999999999753 45899999874 34445565

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.38  E-value=1.2e-13  Score=119.16  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQ  112 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~  112 (546)
                      .+.++|.||||+++|.|||++ +|||+||+.||.+|+.   ..||.|+..+...++.||+.|+++++.|....
T Consensus        18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            356789999999999999999 9999999999999987   67999999998889999999999999986544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=109.67  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTIL  106 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~  106 (546)
                      .+...++.||||++.|.|||+++|||+||+.||.+|++. ...||.|+..+. ..+.||..+...++
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~   74 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ   74 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence            345678999999999999999999999999999999974 558999999886 57889966554443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.38  E-value=1.5e-13  Score=118.64  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW  108 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~  108 (546)
                      ..++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+....+.||..+++.|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            357789999999999999999999999999999999987666899999999888899999999998875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.36  E-value=2.1e-13  Score=125.02  Aligned_cols=70  Identities=13%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPD-FSTVIPNLALKSTILNWCH  110 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~-~~~l~pn~~l~~~i~~~~~  110 (546)
                      .+.+++.||||++.|.|||++ +|||+||+.||.+|+..+...||.|+..+. ...+.||..+.++|..|..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            455788999999999999998 999999999999999977788999999874 4569999999999999843

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=9.4e-13  Score=103.15  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             CCCCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      ...+.+++.||||++.|.|||++ +|||+||+.||.+|++. ...||.|+..+...++.+|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            34678899999999999999998 99999999999999975 4689999999888777776

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=102.52  Aligned_cols=56  Identities=21%  Similarity=0.427  Sum_probs=48.8

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVDGTTPDFSTV   95 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l   95 (546)
                      ..+.+++.||||++.|.|||+++|||+||+.||.+|++.  +...||.|+..+...++
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            467889999999999999999999999999999999974  45589999998776543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.32  E-value=4.7e-13  Score=114.36  Aligned_cols=69  Identities=12%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             CCCceeCcccccccCCCeecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTPDFSTVIPNLALKSTILNWCH  110 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~  110 (546)
                      +.+.+.||||++.|+|||+++|||+||+.||.+|+...  ...||.|+..+....+.+|..+.++++.+..
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999853  3589999999998899999888888877754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.9e-12  Score=98.54  Aligned_cols=47  Identities=23%  Similarity=0.494  Sum_probs=41.8

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVD   86 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~   86 (546)
                      ..+.+++.||||++.|.|||+++|||+||+.||.+|++.  +...||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            457789999999999999999999999999999999975  44578876

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.29  E-value=1.3e-12  Score=116.09  Aligned_cols=64  Identities=14%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWC  109 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~  109 (546)
                      .++|.||||++.|.|||+++|||+||+.||.+|+.. ...||.|+.++...  .+|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            467899999999999999999999999999999874 45799999887542  35666777777765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.28  E-value=9.3e-13  Score=113.34  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI-PNLALKSTILNW  108 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i~~~  108 (546)
                      .++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+..+...++. ++..+.+++..+
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            45678999999999999999999999999999999987667899999998876765 556666666544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=118.92  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNW  108 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~  108 (546)
                      .++++|.||||+++|.|||+++|||+||+.||.+|++.+...||.|+..+...++.||..+.+.|..+
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            57899999999999999999999999999999999987666899999999888899999999988765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.25  E-value=8.8e-13  Score=117.26  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=56.6

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC---------CCCCcccHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD---------FSTVIPNLALKSTILN  107 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~---------~~~l~pn~~l~~~i~~  107 (546)
                      .++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+..+.         ...+.|+..+++.|..
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            567899999999999999999999999999999999877668999987542         2246688888888764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.24  E-value=3.9e-12  Score=97.46  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             CceeCccccc-ccCCC----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           44 GEFLCPVSGS-LMADP----VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        44 ~~~~CpI~~~-~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      +++.||||++ +|.+|    |+++|||+||+.||.+|+..+...||.|+..+...++.|+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5788999999 99999    5789999999999999988777789999999988888776

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.21  E-value=8.9e-10  Score=108.95  Aligned_cols=226  Identities=10%  Similarity=0.005  Sum_probs=170.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ...++.|+..|.++++.++..|+..|..+..           .+.++.|+.+|.++++.++..|+.+|..+...+.....
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~   90 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN   90 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence            3468899999999999999999999988762           35789999999999999999999999988643322111


Q ss_pred             HHhcCChHHHHH-HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036          306 IVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       306 i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                           .++.|.. ++.+.++.+|..|+.+|..+......    ....+++.|+.+|.++++.++..|+.+|.++..    
T Consensus        91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----  157 (280)
T 1oyz_A           91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND----  157 (280)
T ss_dssp             -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence                 2334442 45677999999999999988632211    123467889999999999999999999987643    


Q ss_pred             HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                            .++++.|+.++.+++  ++..++.+|..+....        ..+++.|+.+|.+   .+..++..|+.+|..+.
T Consensus       158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQD---KNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTC---SCHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Confidence                  358999999998765  8888999998875321        1356788888876   46889999999998875


Q ss_pred             cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      .           ..+++.|+.++.+++  ++..|..+|..+..
T Consensus       221 ~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          221 D-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             C-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             C-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            2           236778888887654  77788887777643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.21  E-value=6e-10  Score=105.37  Aligned_cols=188  Identities=18%  Similarity=0.208  Sum_probs=155.0

Q ss_pred             cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhH
Q 009036          267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTA  346 (546)
Q Consensus       267 ~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~  346 (546)
                      ..+.++.|+.+|.+++..++..|+..|..+..          ...++.|+..|.+.++.++..|+.+|..+.        
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------   78 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence            35789999999999999999999999987642          367899999999999999999999998873        


Q ss_pred             HhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccH
Q 009036          347 IGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGR  424 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r  424 (546)
                        ..+.++.|+.+|.+.++.++..|+.+|..+..          .++++.|+.+|.+++  ++..++.+|.++..     
T Consensus        79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  141 (211)
T 3ltm_A           79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  141 (211)
T ss_dssp             --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence              34678999999999999999999999998753          357899999998765  88899999988743     


Q ss_pred             HHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          425 VAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       425 ~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                           ...++.|+.++.+   .++.++..|+.+|..+..           ..+++.|..++.+.++.+|..|...|..+.
T Consensus       142 -----~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          142 -----ERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             -----GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred             -----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                 3578899999976   468999999999998842           125788999999999999999999999987


Q ss_pred             cCCc
Q 009036          505 GRAE  508 (546)
Q Consensus       505 ~~~~  508 (546)
                      ....
T Consensus       203 ~~~~  206 (211)
T 3ltm_A          203 SFNH  206 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.21  E-value=7.2e-10  Score=104.78  Aligned_cols=185  Identities=16%  Similarity=0.145  Sum_probs=154.8

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ...++.|++.|++.++.++..|+..|..+..           ...++.|+.+|.+++..++..|+.+|..+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            5778999999999999999999999987653           3679999999999999999999999998742       


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                         .+.++.|+..|.+.++.+|..|+.+|..+.          ....++.|+.+|.++++.++..|+.+|.++..     
T Consensus        80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence               357899999999999999999999998873          34578999999999999999999999998843     


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                           ..+++.|+.++.+++  ++..++.+|..+..          ..+++.|..++.+   .++.++..|+.+|..+..
T Consensus       142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence                 247899999998765  88889999988743          3467888888887   468999999999988876


Q ss_pred             C
Q 009036          464 G  464 (546)
Q Consensus       464 ~  464 (546)
                      .
T Consensus       204 ~  204 (211)
T 3ltm_A          204 F  204 (211)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=92.10  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhc--CCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTL--GFTPTLVD   86 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~   86 (546)
                      ..+.+++.||||++.|+|||+++|||+||+.||.+|+..  ....||.|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            456788999999999999999999999999999999875  45578876

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.19  E-value=1.2e-09  Score=102.52  Aligned_cols=184  Identities=16%  Similarity=0.156  Sum_probs=155.2

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      .....+.+++.|+++++.++..|+..|..+..           ...++.|+.+|.++++.++..|+.+|..+..      
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            36778999999999999999999999987653           3679999999999999999999999987642      


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                          ...++.|+..|.+.++.+|..|+.+|..+.          ...+++.|+.+|.+.++.++..|+.+|..+..    
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence                357899999999999999999999998863          34578999999999999999999999998843    


Q ss_pred             HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                            ..+++.|+.++.+++  ++..|+.+|..+..          ..+++.|..++.+   .++.++..|+.+|..+-
T Consensus       137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence                  358899999998765  88899999988732          2367888888877   46889999999987763

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3.2e-11  Score=98.10  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             CCCCCCceeCcccccccCC----CeecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCC
Q 009036           39 TAEPPGEFLCPVSGSLMAD----PVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTPDF   92 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~   92 (546)
                      ...+.+++.||||++.|.|    |++++|||+||+.||.+|++..  ...||.|+..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3467788999999999999    9999999999999999999864  4589999987654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.16  E-value=1.5e-09  Score=101.70  Aligned_cols=184  Identities=18%  Similarity=0.218  Sum_probs=154.6

Q ss_pred             CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036          268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      .+..+.++.+|.++++.++..|+.+|..+..          ...++.|+..|.++++.+|..|+.+|..+.         
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------   73 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence            4678999999999999999999999997642          357899999999999999999999998763         


Q ss_pred             hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHH
Q 009036          348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~  425 (546)
                       ...+++.|+.+|.+.++.++..|+.+|..+..          ..+++.|+.+|.+++  ++..|+.+|..+..      
T Consensus        74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------  136 (201)
T 3ltj_A           74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------  136 (201)
T ss_dssp             -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------
T ss_pred             -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------
Confidence             34678999999999999999999999998743          247899999998765  88889999988753      


Q ss_pred             HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                          ...++.|+.++.+   .+..++..|+.+|..+..           ..+++.|..++.+.++.+|..|...|..+..
T Consensus       137 ----~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ----ERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ----GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                3578899999987   468999999999998832           1257889999999999999999999988754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.8e-11  Score=95.49  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=44.7

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ...+++.||||++.|+|||+++|||+||+.||.+|+..+ ..||.|+..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~   61 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE   61 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence            446788999999999999999999999999999998754 689999887654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.14  E-value=1.5e-11  Score=95.86  Aligned_cols=58  Identities=17%  Similarity=0.266  Sum_probs=50.9

Q ss_pred             CCCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 009036           41 EPPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNL   99 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~   99 (546)
                      ...+++.||||++.|.+|       ++++|||+||+.||.+|++.. ..||.|+..+...++.|++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence            446789999999999999       899999999999999999754 5899999998888888763

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.09  E-value=5.3e-09  Score=103.30  Aligned_cols=222  Identities=12%  Similarity=0.097  Sum_probs=168.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      ...++.|++.|++.++.++..|+..|..+........      .+++.|.. ++.++++.++..++.+|.++....... 
T Consensus        53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-  125 (280)
T 1oyz_A           53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-  125 (280)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-
Confidence            4678899999999999999999999988764321111      23455553 456789999999999999986422110 


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                         ....++.|+..|.+.++.+|..|+.+|..+..          ..+++.|+.+|.+++..++..|+++|..+....  
T Consensus       126 ---~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--  190 (280)
T 1oyz_A          126 ---SPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--  190 (280)
T ss_dssp             ---HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--
T ss_pred             ---cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--
Confidence               12357889999999999999999999998742          468999999999999999999999999885322  


Q ss_pred             HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                            ..+++.|+.++.+.+  ++..|+.+|.++.          ...+++.|+..+.+.     .++..|+.+|..+.
T Consensus       191 ------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~-----~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          191 ------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN-----TVYDDIIEAAGELG  249 (280)
T ss_dssp             ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS-----SCCHHHHHHHHHHC
T ss_pred             ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc-----cHHHHHHHHHHhcC
Confidence                  246788999998754  8889999998876          246889999999773     26778888888774


Q ss_pred             cCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 009036          463 HGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLE  501 (546)
Q Consensus       463 ~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~  501 (546)
                      .           ..+++.|..++.+ .++.+...+...|+
T Consensus       250 ~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          250 D-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             C-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             c-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            3           2468889998864 46777777777664

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=8.7e-11  Score=90.78  Aligned_cols=52  Identities=17%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             CCCCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ..+++++.||||++.|.+|       |+++|||+||+.||.+|+.. ...||.|+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            3567889999999999999       89999999999999999985 5589999887653

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.05  E-value=3.9e-11  Score=91.33  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             CceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           44 GEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        44 ~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      +++.||||++.|.+|       ++++|||+||+.||.+|++. ...||.|+..+...++.|+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            467899999999998       88999999999999999986 5589999999887777765

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=1.9e-10  Score=91.37  Aligned_cols=58  Identities=16%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             CCCCCceeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           40 AEPPGEFLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      .....++.||||++.|.+|   ++++|||+||+.||.+|++.. ..||.|+..+...++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence            3456788999999999987   446999999999999999744 689999999887777665

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.02  E-value=2.9e-10  Score=90.09  Aligned_cols=55  Identities=15%  Similarity=0.063  Sum_probs=46.2

Q ss_pred             CCCCceeCccccccc--CCCeecC--CCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036           41 EPPGEFLCPVSGSLM--ADPVVVS--SGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV   95 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m--~dPV~~~--~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l   95 (546)
                      ...+++.||||++.|  .||++++  |||+||+.||.+|++.+...||.|++++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            456889999999999  5778776  999999999999887677799999998765443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.96  E-value=6e-09  Score=119.35  Aligned_cols=271  Identities=13%  Similarity=0.089  Sum_probs=189.9

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhH--Hhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRV--SLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~--~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      .+.++.++..+.++++..+..|+..|..+++.....-.  .+.  -..+++.|+.++.+++..++..|+.+|.++.....
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence            35788999999999999999999999998876432211  000  13467778888888999999999999988775432


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036          302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       302 nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                      ....-.-...++.|+..+.++++++|..|+.+|..++.....  +..+  .+.++.++.++.+.+..++..|+.++..++
T Consensus       207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~  284 (852)
T 4fdd_A          207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLA  284 (852)
T ss_dssp             HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            211000124678888888889999999999999998765322  1111  346778888888889999999999999998


Q ss_pred             cCchhHHHHHhc---CcHHHHHHHH-----------hC-----------c--hHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036          380 LVKSNRTKLVKL---GSVNALLGMV-----------NS-----------G--HMTGRVLLILGNLASCSDGRVAVLDSGG  432 (546)
Q Consensus       380 ~~~~n~~~iv~~---Gav~~Lv~lL-----------~~-----------~--~~~e~al~~L~nLa~~~e~r~~i~~~g~  432 (546)
                      .....+. .+..   ..++.|+..+           .+           .  .++..+..+|..|+....  ..++ ...
T Consensus       285 ~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l  360 (852)
T 4fdd_A          285 EQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHI  360 (852)
T ss_dssp             TSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHH
T ss_pred             cchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHH
Confidence            7543333 2222   4566666666           22           1  156778888888775321  1111 134


Q ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          433 VECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ++.+...+.+   .+...++.|+.+|..++.+....... .-.++++.|+.++.+.++.+|..|.++|..++..
T Consensus       361 ~~~l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          361 LPLLKELLFH---HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHHTC---SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhcC---CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            5666666665   46899999999999998765321111 1134688999999999999999999999998864

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.93  E-value=8.1e-09  Score=115.43  Aligned_cols=193  Identities=19%  Similarity=0.190  Sum_probs=153.3

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHH-HhhccCCHHHHHHHHHHHHHhhcC--chhHHH
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLL-HLLKSDSERTQHDSALALYHLSLV--KSNRTK  387 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~~~  387 (546)
                      .+.+++..|++.+++.|..|+.+|.+|+.+...+..+...+++..++ .+|.+.+.+++..|+++|.||+..  .+.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            45667788999999999999999999998878888888888887765 568888999999999999999974  578899


Q ss_pred             HHhcCcHHHHHHHHhCc-----------------------hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccC
Q 009036          388 LVKLGSVNALLGMVNSG-----------------------HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKG  443 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~-----------------------~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~  443 (546)
                      +++.|+++.|..+|...                       ++.+.++.+|++||. ..+....+...++++.|+..|...
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            99999999999998531                       145678899999996 445566777889999999998654


Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcH---HHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          444 TELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA---EVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       444 ~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v---~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ......++..|+.+|+.++.++......+.+.+..   ..|+.+ ...+...+..+.++|.++.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            33457899999999999999988877777776643   333333 3444555777888888874

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=5.1e-10  Score=86.82  Aligned_cols=53  Identities=13%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST   94 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~   94 (546)
                      ..+.+++.||||++.+.+ |+++|||+||+.||.+|+. ....||.|+..+...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            356788999999999999 9999999999999999988 5668999988766443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.87  E-value=6.9e-09  Score=118.82  Aligned_cols=269  Identities=17%  Similarity=0.123  Sum_probs=186.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchH-
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK-  303 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk-  303 (546)
                      ..++.+++.|++.+.++|..|+..|..+......   .+.  -..+++.|..++.+++.+++..|+.+|..++...... 
T Consensus       174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~  250 (852)
T 4fdd_A          174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL  250 (852)
T ss_dssp             HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            4567778888888999999999999887754321   111  1357888888898999999999999999988642211 


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhc-----------c--C-----
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLK-----------S--D-----  363 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~-----------~--~-----  363 (546)
                      .... .++++.++..+++.+++++..|+.++..++.....+..+..  ...++.|+..+.           +  +     
T Consensus       251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            1111 14678888888888999999999999998865544433321  235566666652           2  1     


Q ss_pred             ----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHH
Q 009036          364 ----SERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLV  437 (546)
Q Consensus       364 ----~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv  437 (546)
                          +-.+++.|+.+|..|+.....  .++. .+++.+.+++.+.+  .++.|+.+|.+++........-.-.++++.|+
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~  406 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI  406 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence                113578888888888763221  1222 36677777777654  88999999999997543211111245778888


Q ss_pred             HHHccCCCCCHHHHHHHHHHHHHHhcCChh--hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          438 GMLRKGTELSESTQESCVSVLYALSHGGLR--FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       438 ~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~--~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ..+.+   .++.++..|+.+|..++.....  .....  ..+++.|+..+.+.++++|+.|..+|..+++..
T Consensus       407 ~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          407 QCLSD---KKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHTTC---SSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCC---CCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            88876   5689999999999998853110  11111  136788888888899999999999999998644

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=2.7e-09  Score=83.59  Aligned_cols=52  Identities=15%  Similarity=0.026  Sum_probs=44.4

Q ss_pred             CCCCCceeCcccccccCCCeec---CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVV---SSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      .+...+..||||++.|.+|+.+   +|||.||+.||.+|++... .||.|+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccc
Confidence            3567788999999999988776   9999999999999998543 89999887654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.85  E-value=7.5e-10  Score=97.05  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             CCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           43 PGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        43 p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      ++++.||||++.|.||       |+++|||+||+.||.+|++.. ..||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence            5789999999999999       999999999999999999754 489999998887777665

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.85  E-value=5.4e-10  Score=82.70  Aligned_cols=46  Identities=11%  Similarity=0.041  Sum_probs=39.7

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      .+++.||||++.|.|||+++|||+||+.||.+|    ...||.|+..+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            467889999999999999999999999999773    4579999887543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.82  E-value=1.9e-09  Score=82.94  Aligned_cols=47  Identities=11%  Similarity=0.079  Sum_probs=40.8

Q ss_pred             CceeCcccccccCCC-eecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADP-VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      .+..||||++.+.|| ++++|||+||+.||.+|+... ..||.|+..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence            456799999999998 778999999999999999744 58999988764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.81  E-value=2e-09  Score=79.13  Aligned_cols=47  Identities=19%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             CceeCcccccccCC----CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMAD----PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      .++.||||++.|.+    |++++|||.|++.||.+|+... ..||.|+..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            45779999999977    8889999999999999999866 78999987653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.81  E-value=2e-07  Score=101.12  Aligned_cols=263  Identities=8%  Similarity=0.025  Sum_probs=184.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.|...+.+.+..+|..|+..|..++...+..   ....-+++.+..+..+++..++..|+.+|..+...-...   
T Consensus        87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---  160 (588)
T 1b3u_A           87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---  160 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence            34566666667788999999999999998764421   122345777778888888999999999998887653321   


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                      .....++.+..++.+.++.+|..|+.+|..++..-....  .....++.|..++.+++..++..|+.+|..++..-..  
T Consensus       161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  236 (588)
T 1b3u_A          161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--  236 (588)
T ss_dssp             HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence            123467888888888999999999999999876533221  2346788889999999999999999999988763221  


Q ss_pred             HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      ......+++.+..++.+.+  ++..++.+|..++.....  .......++.++.++.+   .+..++..|+.+|..++..
T Consensus       237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHH
Confidence            1122347788888887755  788899999888753211  12234568888888877   4688999999999988863


Q ss_pred             C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          465 G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       465 ~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      - ...........+++.+..++.+.++.+|..|..+|..+.
T Consensus       312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2 121111111235566667777777777777666665554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.80  E-value=4.3e-08  Score=103.09  Aligned_cols=273  Identities=14%  Similarity=0.078  Sum_probs=185.1

Q ss_pred             chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC
Q 009036          226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK  300 (546)
Q Consensus       226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~  300 (546)
                      .+.++.++..+.++  ++..+..|+..|..++++. ...-.. .-..+++.++.+|.+.  +..++..|+.++.++...-
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            36788999999888  8999999999999998753 111011 1134788888888877  7999999999998865321


Q ss_pred             c-hH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          301 I-NK-MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       301 ~-nk-~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      . +. ......-.++.|...+.+.+.+++..++.+|..+......  ...+. ...++.++..+++.+..++..|+..+.
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~  284 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWS  284 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            1 10 0001111356666667777899999999999988754321  11111 156777778888889999999999988


Q ss_pred             HhhcCchhH------------------HHHHh---cCcHHHHHHHHhCc---------hHHHHHHHHHHHhhCCcccHHH
Q 009036          377 HLSLVKSNR------------------TKLVK---LGSVNALLGMVNSG---------HMTGRVLLILGNLASCSDGRVA  426 (546)
Q Consensus       377 ~Ls~~~~n~------------------~~iv~---~Gav~~Lv~lL~~~---------~~~e~al~~L~nLa~~~e~r~~  426 (546)
                      .++......                  ..+++   ..+++.|+..+.+.         .++..|..+|..|+..-.  ..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~  362 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD  362 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            887642110                  01111   23566677777431         378888888888875322  11


Q ss_pred             HHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          427 VLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       427 i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      +. ..+++.+...|.+   .+...++.|+.+|..++.+..  .....+  ..+++.|+.++.+.++.+|..|.++|..++
T Consensus       363 ~~-~~~~~~l~~~l~~---~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~  436 (462)
T 1ibr_B          363 IV-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (462)
T ss_dssp             HH-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            22 2345666666665   468899999999999987532  121222  457899999999999999999999999998


Q ss_pred             cCCc
Q 009036          505 GRAE  508 (546)
Q Consensus       505 ~~~~  508 (546)
                      ..-.
T Consensus       437 ~~~~  440 (462)
T 1ibr_B          437 ELLP  440 (462)
T ss_dssp             HHGG
T ss_pred             Hhcc
Confidence            7543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.77  E-value=2.5e-07  Score=100.35  Aligned_cols=263  Identities=11%  Similarity=0.090  Sum_probs=172.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.+...+++.++.+|..|+..|..++......   .....++|.|..++.+++..++..|+.+|..++...... . 
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~-  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-D-  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-H-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-H-
Confidence            34555666668889999999999999998653221   223467899999999999999999999998887642221 1 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc--hh
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK--SN  384 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--~n  384 (546)
                      ....+++.+..++.+.+..+|..|+.+|..++..-...  ......++.++.++.++++.++..|+.+|..++..-  +.
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            22347888888998889999999999999887532111  123457889999999999999999999999987632  22


Q ss_pred             HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                      +....-...++.+..++.+.+  ++..++.+|..++..-. .... ....++.+..++.+   .++.++..++.+|..++
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d---~~~~Vr~~a~~~l~~l~  391 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKD---ECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTC---SCHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCC---CchHHHHHHHHHHHHHH
Confidence            222233457888888887754  77778777777764211 1111 12356777777765   35677777777776665


Q ss_pred             cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ..-.. ...  ...+++.|..++.+.+.++|..+..+|..+.
T Consensus       392 ~~~~~-~~~--~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~  430 (588)
T 1b3u_A          392 EVIGI-RQL--SQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             HHSCH-HHH--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HhcCH-HHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            42100 000  0113344444444444444444444444443

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.77  E-value=8.1e-09  Score=79.68  Aligned_cols=51  Identities=16%  Similarity=0.184  Sum_probs=42.2

Q ss_pred             CCCCceeCcccccccC---CCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           41 EPPGEFLCPVSGSLMA---DPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ....+..||||++.|.   +|++++|||.||+.||.+|+... ..||.|+..+..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence            4567788999999884   56789999999999999999864 369999887654

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.72  E-value=8.3e-09  Score=88.08  Aligned_cols=51  Identities=16%  Similarity=0.036  Sum_probs=42.5

Q ss_pred             CCCceeCcccccccCCCe------------------ecCCCccccHHHHHHHHhc----CCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPV------------------VVSSGHTFERACAHVCKTL----GFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV------------------~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~   92 (546)
                      .+.+..||||++.|.+|+                  +++|||.||+.||.+|+..    ....||.|+..+..
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            445679999999999987                  7899999999999999963    34589999887643

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.72  E-value=8.5e-09  Score=84.32  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             CCCceeCcccccccCC---CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMAD---PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ..++..||||++.|.+   +++++|||.||+.||.+|+.. +..||.|+..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4567889999999998   888999999999999999974 4589999887653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.71  E-value=6.6e-09  Score=76.30  Aligned_cols=47  Identities=17%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             CCceeCcccccccCC---CeecC-CCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMAD---PVVVS-SGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        43 p~~~~CpI~~~~m~d---PV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      .++..||||++.|.+   |++++ |||.|++.||.+|++. ...||.|+..+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            456789999999999   88887 9999999999999975 55899998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.70  E-value=2.6e-08  Score=111.32  Aligned_cols=188  Identities=14%  Similarity=0.127  Sum_probs=142.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccccc--chhhHH
Q 009036          271 LLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDD--QNKTAI  347 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i  347 (546)
                      |.+++..|.++++..|..|+.+|.||+.++.++..+...++|..++. +|.+.+.+++..|+++|.+|+...  +....+
T Consensus        36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l  115 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL  115 (684)
T ss_dssp             THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence            45566779999999999999999999998899999999998887655 688889999999999999998764  557777


Q ss_pred             hhcCChHHHHHhhccC--------------C-------HHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCc-
Q 009036          348 GVLGALPPLLHLLKSD--------------S-------ERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSG-  404 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~~--------------~-------~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~-  404 (546)
                      ...|++++|..+|+..              .       ..+..+++.+|++||.. .+....+...|.++.|+.+|.+. 
T Consensus       116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~  195 (684)
T 4gmo_A          116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD  195 (684)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence            8899999999998641              1       12334677889999874 44566777889999999998542 


Q ss_pred             ----hHHHHHHHHHHHhhCCc-ccHHHHHhCCcH---HHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          405 ----HMTGRVLLILGNLASCS-DGRVAVLDSGGV---ECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       405 ----~~~e~al~~L~nLa~~~-e~r~~i~~~g~i---~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                          ++...|+.+|.+|+... +....+.+.+..   ..++.+....    ...+-.++++|+++.
T Consensus       196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~----~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          196 IAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT----DPRAVMACGVLHNVF  257 (684)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS----CTTHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC----cHHHHHHHHHHHhHh
Confidence                38889999999999754 445556665532   3333333332    234567888998874

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.69  E-value=3.3e-09  Score=83.25  Aligned_cols=46  Identities=24%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +.+++.||||++.++|||+++|||+ ||+.|+.+|     ..||.|+..+..
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            4467899999999999999999999 999999988     679999887643

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.4e-08  Score=79.72  Aligned_cols=49  Identities=14%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             CCceeCcccccccCCC---eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADP---VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        43 p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      .++..||||++.|.+|   ++++|||.||+.||.+|+... ..||.|+..+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence            4667899999999998   788999999999999999753 589999887654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.64  E-value=8.3e-09  Score=105.35  Aligned_cols=48  Identities=13%  Similarity=0.034  Sum_probs=43.5

Q ss_pred             ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ...||||.+.+.|||+++|||+||..||.+|+......||.|+..+..
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            378999999999999999999999999999998667789999987654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.63  E-value=2.4e-07  Score=101.75  Aligned_cols=265  Identities=12%  Similarity=0.037  Sum_probs=181.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc-hHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI-NKML  305 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~-nk~~  305 (546)
                      ..++.+.+.|.+.++.+|..|+..|..+.+.+++   .+.+.++++.|..+|.++++.++..|+.+|..++.+.. ....
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence            3456688899999999999999999999886554   22335789999999999999999999999999987532 2100


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc----C
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL----V  381 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~----~  381 (546)
                      -...+.+..|+..|...++-.+...+.+|..+...++..    ....++.+..+|++.+..++..|++++.++..    .
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence            001124667777777888888888888888876443211    13467788888888899999999999999874    2


Q ss_pred             chhHHHHHhcCcHHHHHHHHhC-chHHHHHHHHHHHhhCC-cc------------------c-HHH---H---HhCCcHH
Q 009036          382 KSNRTKLVKLGSVNALLGMVNS-GHMTGRVLLILGNLASC-SD------------------G-RVA---V---LDSGGVE  434 (546)
Q Consensus       382 ~~n~~~iv~~Gav~~Lv~lL~~-~~~~e~al~~L~nLa~~-~e------------------~-r~~---i---~~~g~i~  434 (546)
                      ++.... +-..+++.|+.++.. .+++..++..|..++.. ++                  - +.+   +   .+...+.
T Consensus       274 ~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~  352 (591)
T 2vgl_B          274 SDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA  352 (591)
T ss_dssp             TBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred             HHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence            222222 223456677766653 33777788877777531 10                  0 111   1   1222333


Q ss_pred             ----HHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          435 ----CLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       435 ----~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                          .|...+.+   .+.+.+..++.++..++.......     ...++.|+.++....+.++..+...|+.+....
T Consensus       353 ~iv~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~  421 (591)
T 2vgl_B          353 QVLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY  421 (591)
T ss_dssp             HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence                34444444   467888889999988887543221     126789999999888888888888887776543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.58  E-value=3.5e-07  Score=100.43  Aligned_cols=257  Identities=16%  Similarity=0.097  Sum_probs=177.3

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .....+++.+.+.+...+.-+.-.+..+++.+++...     -++..|.+.|.++++.++..|+.+|.++.. ++...  
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~--  120 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE--  120 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH--
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH--
Confidence            5577888988999999988888888888876544321     235677777889999999999999998752 22221  


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhH-
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNR-  385 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~-  385 (546)
                         ..++.+...|.+.++.+|..|+.+|..+......  .+...+.++.|..+|.+.++.++..|+.+|..++...... 
T Consensus       121 ---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~  195 (591)
T 2vgl_B          121 ---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN  195 (591)
T ss_dssp             ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             ---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence               2467788899999999999999999998764321  2223467899999999999999999999999998754311 


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ..-...+++..|+..+.+.+  .+...+.+|..++..++.-    ....++.+..+|.+   .+..+...|+.++..+..
T Consensus       196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~---~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSH---ANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCS---STTHHHHHHHHHHHHSCC
T ss_pred             chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcC---CChHHHHHHHHHHHHHhh
Confidence            00011134666666665433  6667788887777432211    12345566666665   457888999999988864


Q ss_pred             C---C-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          464 G---G-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       464 ~---~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .   + +..+..+..  +.+.|+.++ +.++.+|..|...|..+...
T Consensus       269 ~~~~~~~~~~~~~~~--~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          269 LLPKDSDYYNMLLKK--LAPPLVTLL-SGEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             SCCBTTBSHHHHHHH--THHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHH--HHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence            2   2 223333322  456666655 47788888888888877653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.57  E-value=1e-08  Score=84.33  Aligned_cols=66  Identities=11%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             CceeCcccccccCCCeec---CCCccccHHHHHHHHhc----CC---CCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVV---SSGHTFERACAHVCKTL----GF---TPTLV--DGTT--PDFSTVIPNLALKSTILNWC  109 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~----~~---~~cp~--~~~~--~~~~~l~pn~~l~~~i~~~~  109 (546)
                      +.|.||||++.+.+|+++   +|||+||+.||.+|++.    +.   -.||.  |+..  +.+. .+.++...+++++|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~-~i~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN-EIECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH-HHHHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH-HHHHHCCHHHHHHHH
Confidence            578899999999999886   79999999999997752    32   26888  8776  4432 222333355666665


Q ss_pred             H
Q 009036          110 H  110 (546)
Q Consensus       110 ~  110 (546)
                      .
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2.3e-08  Score=78.56  Aligned_cols=46  Identities=24%  Similarity=0.236  Sum_probs=39.7

Q ss_pred             CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +.+++.||||++.++|||+++|||+ ||+.|+.++     ..||.|+..+..
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            3567889999999999999999999 999999643     579999987654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.52  E-value=1.5e-08  Score=88.60  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CCCceeCcccccccCCC-------eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccH
Q 009036           42 PPGEFLCPVSGSLMADP-------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNL   99 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~   99 (546)
                      .++.+.||||++.|.+|       |+++|||+||..||.+|++.. .+||.|+..+...++.|++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence            35778899999999998       899999999999999999754 5899999998877777753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.41  E-value=2.3e-06  Score=97.35  Aligned_cols=265  Identities=10%  Similarity=0.086  Sum_probs=177.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-h-hhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch---
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-E-TRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN---  302 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~-~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n---  302 (546)
                      .++.+...|.+.++..+..|+..|..++.... . ....+  ..+++.|+..+.++++.++..++.+|..++..-..   
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence            44556666788899999999999999996532 2 22222  25788899999999999999999999988753110   


Q ss_pred             -HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc------hhhHHhhcCChHHHHHhhccC--CHHHHHHHHH
Q 009036          303 -KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ------NKTAIGVLGALPPLLHLLKSD--SERTQHDSAL  373 (546)
Q Consensus       303 -k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~------~k~~i~~~g~l~~Lv~lL~~~--~~~~~~~A~~  373 (546)
                       ...+  ...++.|+..|++. +.++..|+.+|.+++..-.      ....+  ...++.|+.++.+.  +..++..++.
T Consensus       448 ~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~  522 (861)
T 2bpt_A          448 PQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFS  522 (861)
T ss_dssp             TTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred             CHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence             1111  23577888888775 8999999999988865311      11111  34577888888753  3678889999


Q ss_pred             HHHHhhcCch-hHHHHHhcCcHHHHHHHHhCc-----------------hHHHHHHHHHHHhhCCcccHHHHHh--CCcH
Q 009036          374 ALYHLSLVKS-NRTKLVKLGSVNALLGMVNSG-----------------HMTGRVLLILGNLASCSDGRVAVLD--SGGV  433 (546)
Q Consensus       374 aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~~~-----------------~~~e~al~~L~nLa~~~e~r~~i~~--~g~i  433 (546)
                      +|..+..... .....+. ..++.+++.+...                 .++..++.+|.+++..-..  .+..  ...+
T Consensus       523 al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~  599 (861)
T 2bpt_A          523 ALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLM  599 (861)
T ss_dssp             HHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHH
T ss_pred             HHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH
Confidence            9999876332 2222222 3566676666421                 2566788888888753221  1111  2456


Q ss_pred             HHHHHHHccCCCCCH-HHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          434 ECLVGMLRKGTELSE-STQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       434 ~~Lv~lL~~~~~~s~-~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +.++..+...   +. .+++.++.++..++.. .......+..  +++.|+..+.+.++.++..|..++..+.+..
T Consensus       600 ~~l~~~l~~~---~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          600 GLFFRLLEKK---DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             HHHHHHHHST---TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHccC---CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            7777778773   23 6788888888888753 2234444433  6788888888888889999999988777544

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.40  E-value=1.7e-05  Score=87.54  Aligned_cols=250  Identities=15%  Similarity=0.133  Sum_probs=177.8

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-chHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-INKML  305 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~nk~~  305 (546)
                      ..++.+.+.|.+.++.++..|+..|..+.+.+++...     ++++.|..+|.+.|+.++..|+.+|..++... +....
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence            4467788888999999999999999999987664322     67888888999999999999999999988653 21122


Q ss_pred             HHhcCChHHHHHHHcc---------------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc------cCC
Q 009036          306 IVRSGLVPPIVDVLMA---------------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK------SDS  364 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~---------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~------~~~  364 (546)
                      +  ...++.++.+|..               .++-.+...+.+|..+...+...    ....++.|..++.      +.+
T Consensus       217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred             H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence            2  2578888888764               37888888999998887654221    1234455555543      224


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036          365 ERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK  442 (546)
Q Consensus       365 ~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~  442 (546)
                      ..+...|+.++.++...+.    +.. .++..|..+|.+.  +++..|+..|..++...   ..++. .....++..+.+
T Consensus       291 ~aV~~ea~~~i~~l~~~~~----l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d  361 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESG----LRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD  361 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHH----HHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhcCCCHH----HHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC
Confidence            5677888889888755322    121 4678888888754  48888898888887531   22222 245567777776


Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          443 GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       443 ~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                         .+..++..|+.+|..++... ....      +++.|+..+.+.+..+|+.+...|..++..
T Consensus       362 ---~d~~Ir~~alelL~~l~~~~-nv~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          362 ---LDVSIKRRAMELSFALVNGN-NIRG------MMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             ---SCHHHHHHHHHHHHHHCCSS-STHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             ---CChhHHHHHHHHHHHHcccc-cHHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence               46889999999999998753 2222      346777777788888998888888888764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.37  E-value=1.1e-05  Score=91.76  Aligned_cols=272  Identities=14%  Similarity=0.080  Sum_probs=182.4

Q ss_pred             chhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISR--YTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~  299 (546)
                      ...++.++..+.++  ++..+..++..|..++.....  ..+.  -..+++.+...+.++  +..++..|+.+|.++...
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            35788899999888  899999999999999875311  1122  145677788888776  689999999999887643


Q ss_pred             -Cch-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHH
Q 009036          300 -KIN-KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALAL  375 (546)
Q Consensus       300 -~~n-k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL  375 (546)
                       ..+ .........++.+...+.+.+.+++..++.+|..+......  ...+ ....++.++..+.+.++.++..|+.++
T Consensus       205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l  283 (876)
T 1qgr_A          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence             111 00011112566777777777899999999999988754321  2221 225678888888888899999999988


Q ss_pred             HHhhcCchh---------------------HHHHHhcCcHHHHHHHHhC---------chHHHHHHHHHHHhhCCcccHH
Q 009036          376 YHLSLVKSN---------------------RTKLVKLGSVNALLGMVNS---------GHMTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       376 ~~Ls~~~~n---------------------~~~iv~~Gav~~Lv~lL~~---------~~~~e~al~~L~nLa~~~e~r~  425 (546)
                      .+++.....                     ..+-.-...++.++..+..         ..++..|+.+|..|+..-..  
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--  361 (876)
T 1qgr_A          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--
Confidence            888753210                     0000002356677777742         12777888888887753211  


Q ss_pred             HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036          426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM  503 (546)
Q Consensus       426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L  503 (546)
                      .++ ...++.+...+.+   .+...++.|+.+|..++.+..  .....+.  .+++.|+..+.+.++.+|..|.++|..+
T Consensus       362 ~~~-~~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~  435 (876)
T 1qgr_A          362 DIV-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRI  435 (876)
T ss_dssp             GGH-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            111 1244555555554   468899999999999987542  2333332  3788999999999999999999999999


Q ss_pred             hcCCc
Q 009036          504 KGRAE  508 (546)
Q Consensus       504 ~~~~~  508 (546)
                      .....
T Consensus       436 ~~~~~  440 (876)
T 1qgr_A          436 CELLP  440 (876)
T ss_dssp             HHHCG
T ss_pred             HHhCc
Confidence            87543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.37  E-value=1.1e-06  Score=104.53  Aligned_cols=269  Identities=14%  Similarity=0.106  Sum_probs=181.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..+..++.++.+.+.+.|..|...|.+..+.+...-..-....+++.|+..|.+.+..+|..|+.+|.+++..-... . 
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~-   83 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-Q-   83 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-H-
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-H-
Confidence            56788999999999999999999998876543110000011246788888898899999999999999988643221 1 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchh------hHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNK------TAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLS  379 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls  379 (546)
                      . ..+++.|+..|.+.+..+|..|+.+|..++..-...      ..-.....++.|+..+. +++..++..|+.+|..++
T Consensus        84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            1 236777888888888889999999998876432211      01112457888999998 478899999999999987


Q ss_pred             cC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          380 LV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       380 ~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                      .. ...-.. .-...++.|+..|.+.+  +++.|+.+|..++......  + -...++.++..|....  +...+..++.
T Consensus       163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~--~~~~r~~a~~  236 (1230)
T 1u6g_C          163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKND--SMSTTRTYIQ  236 (1230)
T ss_dssp             HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC--SSCSCTTHHH
T ss_pred             HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC--chhHHHHHHH
Confidence            52 110000 01235566666666643  8999999999998754321  2 2346788888887642  1234556677


Q ss_pred             HHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          457 VLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       457 ~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      +|..++.. +......+  ..+++.++..+++.++.+|+.|..++..+...
T Consensus       237 ~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            77777652 21221111  34778888989888899999999888877654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.36  E-value=1.5e-05  Score=87.89  Aligned_cols=249  Identities=12%  Similarity=0.073  Sum_probs=181.3

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i  306 (546)
                      .+..+.+.|+++++.++..|++.|..+...  +    +. ..+++.+..+|.+.++.++..|+.++.++... ++..   
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v---  177 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS--E----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM---  177 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--H----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH--H----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence            456778888999999999999999988742  1    22 35688899999999999999999999998763 4322   


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhcc---------------CCHHHHHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLKS---------------DSERTQHD  370 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~~---------------~~~~~~~~  370 (546)
                        .+.++.+..+|.+.++.++..|+.+|..++..+.. ...+  ...++.|+.+|..               .++-.+..
T Consensus       178 --~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          178 --EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             --GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence              25778888889989999999999999998765322 1111  3678888887763               36778888


Q ss_pred             HHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC------c--hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036          371 SALALYHLSLVKSNRTKLVKLGSVNALLGMVNS------G--HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK  442 (546)
Q Consensus       371 A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~------~--~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~  442 (546)
                      .+.+|..++..+...    ....++.|..++..      .  .+...|+.++..+...+.-+    . .++..|..+|.+
T Consensus       254 il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~----~-~a~~~L~~~L~~  324 (618)
T 1w63_A          254 ILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR----V-LAINILGRFLLN  324 (618)
T ss_dssp             HHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH----H-HHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH----H-HHHHHHHHHHhC
Confidence            889999988754321    12355566666542      1  26677888888876543212    1 456788888876


Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          443 GTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       443 ~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                         .++.++..|+.+|..++...+   ..+.  .....++..+.+.+..+|..|.++|..|....
T Consensus       325 ---~d~~vr~~aL~~L~~i~~~~p---~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~  381 (618)
T 1w63_A          325 ---NDKNIRYVALTSLLKTVQTDH---NAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN  381 (618)
T ss_dssp             ---SSTTTHHHHHHHHHHHHHHHH---HHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred             ---CCCchHHHHHHHHHHHHhhCH---HHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence               357889999999998875322   2222  14567888889999999999999999998754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.34  E-value=1.2e-05  Score=91.60  Aligned_cols=270  Identities=10%  Similarity=0.038  Sum_probs=178.1

Q ss_pred             hhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhh-hHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-Cch
Q 009036          227 EQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREET-RVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~-r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..++.++..|...  +.+++..|++.|..+...-..+ ........+++.+..++.+.+.+++..++.+|..+... +..
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            4456677777766  6889999999999887532211 00111123677777788888999999999999988763 222


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-------------------hhhHHh--hcCChHHHHHhhc
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-------------------NKTAIG--VLGALPPLLHLLK  361 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------------~k~~i~--~~g~l~~Lv~lL~  361 (546)
                      -.......+++.++..+.+.++.++..|+.++..++....                   ....+.  -...++.++..|.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            2222333678888888888889999999988887764310                   000110  0234666777775


Q ss_pred             c-------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcc--cHHHHHhC
Q 009036          362 S-------DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSD--GRVAVLDS  430 (546)
Q Consensus       362 ~-------~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e--~r~~i~~~  430 (546)
                      .       ++..+++.|+.+|..|+.....  .++. .+++.+...+.+.+  +++.++.+|..++....  .....+ .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2       2446888888888888763221  1122 35566666666654  88899999999987432  111222 3


Q ss_pred             CcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          431 GGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLR---FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       431 g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~---~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ..++.|+..|.+   .+..++..|+.+|..++.....   ....+.  .+++.|+..+.+. +++++.|..+|..+...
T Consensus       408 ~~l~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          408 QAMPTLIELMKD---PSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCchhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            478888888877   4688999999999999874221   111121  2567788887774 89999999999988764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.33  E-value=3.1e-06  Score=81.64  Aligned_cols=178  Identities=18%  Similarity=0.145  Sum_probs=132.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--CchHHHHH
Q 009036          231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE--KINKMLIV  307 (546)
Q Consensus       231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~--~~nk~~i~  307 (546)
                      .+.+.+.+.+|.+|..|+..|..+....+.....- -..+++.|..++. +.+..++..|+.+|..|+..  +.... ..
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            46777889999999999999999987632211000 1246788888895 89999999999999998863  22212 12


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-Cc-h--
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VK-S--  383 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~-~--  383 (546)
                       ..+++.|+..|.+.+..+|..|..+|..+......      ...++.|...|++.++.++..++..|..+.. .. .  
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence             23789999999999999999999999988664322      2357788888998999999999999999644 32 2  


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      ....+ . ..++.|+.+|.+..  ++..|..+|..|+.
T Consensus       170 ~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            12222 2 47899999997644  88889988888875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3e-07  Score=73.22  Aligned_cols=48  Identities=15%  Similarity=0.151  Sum_probs=39.1

Q ss_pred             CceeCcccccccCC--------------Ceec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMAD--------------PVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        44 ~~~~CpI~~~~m~d--------------PV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      ++-.|+||++-|.+              ++++ +|||.|.+.||.+|+... ..||.|+..+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence            45569999999988              4555 599999999999999854 489999887643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.30  E-value=2.1e-05  Score=89.33  Aligned_cols=271  Identities=14%  Similarity=0.093  Sum_probs=180.4

Q ss_pred             chhHHHHHHhcCCC-CHHHHHHHHHHHHHHhccChhhhHHhh--cCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-
Q 009036          226 NEQEDYFVQKLKSP-QVHEVEEALISLRKLTRSREETRVSLC--TPRLLLALRSLIISR--YTNVQVNAVAALVNLSLE-  299 (546)
Q Consensus       226 ~~~i~~lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~l~--~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~-  299 (546)
                      .+.++.|+..+.++ ++..+..++..|..+++.-....+.+.  ...+++.+...+.+.  +..++..|+.+|.++... 
T Consensus       133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~  212 (861)
T 2bpt_A          133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35678899999888 899999999999998875321100011  134677777778776  899999999999886432 


Q ss_pred             CchH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          300 KINK-MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       300 ~~nk-~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      ..+- ........++.|...+.+.+.++|..++.+|..+.....  ....+. ...++.++..+.+.+.+++..|+.++.
T Consensus       213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~vr~~a~~~l~  291 (861)
T 2bpt_A          213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWS  291 (861)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            1110 000012256677777888899999999999988865422  122111 145667777788888999999999998


Q ss_pred             HhhcCchh------------------HHHHHhcCcHHHHHHHHhC---------chHHHHHHHHHHHhhCCcccHHHHHh
Q 009036          377 HLSLVKSN------------------RTKLVKLGSVNALLGMVNS---------GHMTGRVLLILGNLASCSDGRVAVLD  429 (546)
Q Consensus       377 ~Ls~~~~n------------------~~~iv~~Gav~~Lv~lL~~---------~~~~e~al~~L~nLa~~~e~r~~i~~  429 (546)
                      .++.....                  -...+ ..+++.|+..+.+         ..++..+..+|..|+..-.  ..++ 
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-  367 (861)
T 2bpt_A          292 TICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-  367 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-
T ss_pred             HHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-
Confidence            88764211                  01111 3467788888763         1377788888888875321  0111 


Q ss_pred             CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcC
Q 009036          430 SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       430 ~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ...++.+...+.+   .+...++.|+.+|..++.+.  ......+.  .+++.|+..+.+.++.+|..+.++|..++..
T Consensus       368 ~~l~~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          368 EPVLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---CChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            1233444455554   45789999999999998753  22333333  3678888888999999999999999888764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.27  E-value=3.8e-07  Score=68.93  Aligned_cols=47  Identities=17%  Similarity=0.148  Sum_probs=40.9

Q ss_pred             CceeCcccccccCCCeec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVV--SSGHT-FERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      .+..|+||++-++|||++  +|||. ||..|+.+|++.+ ..||.|++++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence            456799999999999998  99998 9999999988654 68999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.26  E-value=6.1e-06  Score=86.47  Aligned_cols=269  Identities=9%  Similarity=0.010  Sum_probs=175.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC--chHHH
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK--INKML  305 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~--~nk~~  305 (546)
                      ..++..|.+.+..+ ..+...|..+++......   .-.++++.|+..+.++  +..+++.|+.+|..++.+.  +.-..
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~  168 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence            45777787777667 778888888876531110   1267999999999988  9999999999999988632  11111


Q ss_pred             HHhcCChHHHHHHHccC--CHHHHHHHHHHHhhcccccc-h-hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          306 IVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSLALDDQ-N-KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      .. ..+++.++..|.+.  +..+|..|+.++.++...-. . .......-.++.|...+.+.+.+++..++.+|..++..
T Consensus       169 ~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  247 (462)
T 1ibr_B          169 KS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (462)
T ss_dssp             GH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            11 23678888888887  79999999999988643211 1 00001111356666677778899999999999998763


Q ss_pred             chhH-HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHH------------------HHh---CCcHHHHH
Q 009036          382 KSNR-TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVA------------------VLD---SGGVECLV  437 (546)
Q Consensus       382 ~~n~-~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~------------------i~~---~g~i~~Lv  437 (546)
                      .... ...+..++++.++..+.+.+  ++..++..+..++........                  +.+   ...++.++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~  327 (462)
T 1ibr_B          248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT  327 (462)
T ss_dssp             CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence            2211 01111156777777776543  788888888888754211110                  111   23456666


Q ss_pred             HHHccCC----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          438 GMLRKGT----ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       438 ~lL~~~~----~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +.|....    ..+...+..|+.+|..++..-.+  .++.  .+++.+..++.+.+.++|+.|..+|..+....
T Consensus       328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~  397 (462)
T 1ibr_B          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  397 (462)
T ss_dssp             HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence            6665421    12235788888888888763221  1111  25677888888999999999999999999744

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.26  E-value=4.6e-07  Score=68.66  Aligned_cols=48  Identities=19%  Similarity=0.154  Sum_probs=41.6

Q ss_pred             CCceeCcccccccCCCeec--CCCcc-ccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPVVV--SSGHT-FERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      .++..|+||++-++|+|++  +|||. ||..|+.+|++. +..||.|++++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3566899999999999988  99999 899999999874 457999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.25  E-value=1.7e-07  Score=74.26  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=39.9

Q ss_pred             CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +.++..|+||++.++|||+++|||. ||+.|+.+|.     .||.|+..+..
T Consensus        15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            4566789999999999999999999 9999998763     89999987653

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.20  E-value=2.1e-07  Score=94.46  Aligned_cols=46  Identities=17%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +.+++.||||++.+.|||+++|||+ ||+.|+.+|     ..||.|+.++..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            3467899999999999999999999 999999988     579999887653

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=1.6e-06  Score=66.43  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=39.7

Q ss_pred             CCCceeCcccccccCCCeecCCCcc-ccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           42 PPGEFLCPVSGSLMADPVVVSSGHT-FERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        42 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      -.++..|+||++-.+|||+++|||. ||..|+.+     ...||.|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            3467889999999999999999999 99999974     3589999987654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.12  E-value=1.8e-06  Score=72.31  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=38.3

Q ss_pred             ceeCcccccccCCC------------------eecCCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           45 EFLCPVSGSLMADP------------------VVVSSGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        45 ~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      +-.|+||++-|.+|                  ++++|||.|.+.||.+|+.. +..||.|+...
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~   99 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW   99 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence            45699999999987                  34799999999999999985 56899998764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.12  E-value=3.6e-05  Score=72.44  Aligned_cols=185  Identities=11%  Similarity=0.084  Sum_probs=142.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      ++.+..++..|...+..++..|+..|.++.+.-+ ..+.... ..+++.++.++.+.|..+.-.|+.+|..|-.+ +-..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            4677888999999999999999999999998733 2333333 35799999999999999999999999988775 4444


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      ..+..  .+..|..++.+++.-++.+|+..|..|......+      +.+..|+.++.+.+.+++..|+.+|.+++...+
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            43332  4678899999999999999999999994333232      355677888888999999999999999987543


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS  421 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~  421 (546)
                      ...  +-.+++.-+-++|.+.+  +.+.|+.+|..+.+.+
T Consensus       183 D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          183 DSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            211  11235555677777655  8999999999998754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.12  E-value=2.2e-05  Score=76.28  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=131.6

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-HhccChhhhHHhhc-CChHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC---CchHHH
Q 009036          232 FVQKLKSPQVHEVEEALISLRK-LTRSREETRVSLCT-PRLLLALRSLI-ISRYTNVQVNAVAALVNLSLE---KINKML  305 (546)
Q Consensus       232 lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~l~~-~g~i~~Lv~lL-~s~~~~v~~~A~~~L~nLs~~---~~nk~~  305 (546)
                      +-..|.+.+|.+|.+|+..|.. +...++.....-.+ ..++..|...+ ...+..++..|+.+|..|+..   +.....
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4566789999999999999999 87543221100111 24677888888 678999999999999998853   122201


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      ... -+++.++..+++....++..+..+|..++..-+. ....  -...++.|+..|++.++.++..++.+|..+.....
T Consensus       101 y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            221 2689999999998999999988888887653211 0011  12367788889998999999999999998876433


Q ss_pred             h---HH-HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC
Q 009036          384 N---RT-KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS  419 (546)
Q Consensus       384 n---~~-~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~  419 (546)
                      .   .. ..+....++.|.+++.+.+  +++.|..+|..++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            1   11 2222468999999998755  89988888887764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.09  E-value=3.3e-05  Score=72.71  Aligned_cols=219  Identities=16%  Similarity=0.107  Sum_probs=155.3

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-C-chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhh
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLE-K-INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKT  345 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~-~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~  345 (546)
                      +.+..|..+|...|..++.+++.+|..+-.. + .-+..+.+ ..++.++.++++.+..+...|+.+|..|..+-+ ...
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            4588899999999999999999999998875 2 33333333 489999999999999999999999998876542 222


Q ss_pred             HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCccc
Q 009036          346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDG  423 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~  423 (546)
                      .+.  ..+..|..++.++++-....|+..|..|......      -+++..+..++.+.+  ++..++.+|.+++...+.
T Consensus       112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D  183 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD  183 (265)
T ss_dssp             HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred             HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence            222  2567888888989999999999999998332211      146777888886655  888899999999874432


Q ss_pred             HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHHH
Q 009036          424 RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRML  500 (546)
Q Consensus       424 r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~lL  500 (546)
                      ..-+  .+.+.-+-.+|.+   .++..++.|+.+|..+....  +.....+.  ++....-.+. ..|.|.++.+|..+-
T Consensus       184 ~~i~--~~I~~eI~elL~~---eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          184 SGHL--TLILDEIPSLLQN---DNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             CCCG--GGTTTTHHHHHTC---SCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHH
Confidence            2211  1344455666777   57999999999999998742  12222111  1222222344 688999999998765


Q ss_pred             HHh
Q 009036          501 ELM  503 (546)
Q Consensus       501 ~~L  503 (546)
                      ..+
T Consensus       257 ~~l  259 (265)
T 3b2a_A          257 DLI  259 (265)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.05  E-value=0.0002  Score=78.85  Aligned_cols=253  Identities=12%  Similarity=0.099  Sum_probs=171.5

Q ss_pred             hhHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          227 EQEDYFVQKL--KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       227 ~~i~~lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      ..++.+.+.|  .+.++.++.+|+-.+..+.+.+++.   +...++++.|..+|.+.|+.++..|+.+|..++.+...  
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--  220 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--  220 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence            4456777888  8889999999999999999876532   22258999999999999999999999999988764321  


Q ss_pred             HHHhcCChHHHHHHHc----cC-------------CHHHHHHHHHHHhhccccc--chhhHHhhcCChHHHHHhh-----
Q 009036          305 LIVRSGLVPPIVDVLM----AG-------------SAEAQEHACGAIFSLALDD--QNKTAIGVLGALPPLLHLL-----  360 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~----~~-------------~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~l~~Lv~lL-----  360 (546)
                      .+  ...++.++..|.    .+             ++-.+.....+|..+...+  +.+..+.+  .+..++..+     
T Consensus       221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k  296 (621)
T 2vgl_A          221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK  296 (621)
T ss_dssp             HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred             HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence            11  124455554443    22             5778888999998887543  22332222  334444332     


Q ss_pred             ----ccCCH--HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036          361 ----KSDSE--RTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDSGG  432 (546)
Q Consensus       361 ----~~~~~--~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~g~  432 (546)
                          ++.+.  .+.-+|+.++.++...++...     .++..|..+|.+.  +++..++..|..++........+.  ..
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~  369 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH  369 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence                22222  677788888888864332222     3677788888643  488899999999987543223332  34


Q ss_pred             HHHHHHHHc-cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          433 VECLVGMLR-KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       433 i~~Lv~lL~-~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      ...++..|. +   .+..++..|+.+|..++..+ ....      ++..|...+...+...++.+...+..++.
T Consensus       370 ~~~i~~~L~~d---~d~~Ir~~aL~lL~~l~~~~-Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          370 IETVINALKTE---RDVSVRQRAVDLLYAMCDRS-NAQQ------IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHTTC---CCHHHHHHHHHHHHHHCCHH-HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccC---CCHhHHHHHHHHHHHHcChh-hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            567777787 5   46889999999999998532 2222      45677777777888888888877777763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.04  E-value=2.9e-05  Score=92.36  Aligned_cols=223  Identities=12%  Similarity=0.085  Sum_probs=155.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCch----
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKIN----  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~n----  302 (546)
                      ..+..+++.|.+.++++|..|+..|..++.....  ..+  ..+++.|+..|.+++..++..|+.+|..++..-..    
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            4567888889989999999999999999875432  111  24677888888888888999999999888753211    


Q ss_pred             ---HHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          303 ---KMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       303 ---k~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                         .... -...++.|+..+. +.+..++..|+.+|..++....  ...  .....++.|+..|.+.+..++..|+.+|.
T Consensus       124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~  200 (1230)
T 1u6g_C          124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALG  200 (1230)
T ss_dssp             CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence               1111 2347899999998 5789999999999998874311  111  11346777888888888999999999999


Q ss_pred             HhhcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHH
Q 009036          377 HLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQ  451 (546)
Q Consensus       377 ~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~  451 (546)
                      .++......  + -...++.|+..|.+.   ..+..++.+|..++.....  .+..  ...++.++..+..   .++.++
T Consensus       201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d---~~~~vR  272 (1230)
T 1u6g_C          201 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELR  272 (1230)
T ss_dssp             HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTH
T ss_pred             HHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC---CCHHHH
Confidence            998754322  2 224688888877543   2455567777766643211  2322  4578888888876   356788


Q ss_pred             HHHHHHHHHHhcC
Q 009036          452 ESCVSVLYALSHG  464 (546)
Q Consensus       452 e~Av~~L~~L~~~  464 (546)
                      +.++.+|..++..
T Consensus       273 ~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          273 EYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888763

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.98  E-value=0.00068  Score=74.60  Aligned_cols=257  Identities=14%  Similarity=0.122  Sum_probs=165.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .....+++.+.+.+...+.-+.-.+..+++.+++.- .+    ++..+.+-|.++++.++..|+.+|.++...     .+
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~-~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~  143 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI-RL----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EM  143 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH-HH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH-HH----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HH
Confidence            346788888899999888888888888887765332 11    356677778899999999999999998541     13


Q ss_pred             HhcCChHHHHHHH--ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036          307 VRSGLVPPIVDVL--MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       307 ~~~g~l~~Lv~lL--~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                      .+ ..++.+...|  .+.++.+|..|+.++..+...+.  ..+...+.++.|.++|.+.++.++..|+.+|..++.....
T Consensus       144 ~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          144 AE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             HH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence            33 3678888999  77899999999999998876432  1122247899999999988999999999999999874321


Q ss_pred             HHHHHhcCcHHHHHH----HHhC---------------chHHHHHHHHHHHhhCCc--ccHHH-----------------
Q 009036          385 RTKLVKLGSVNALLG----MVNS---------------GHMTGRVLLILGNLASCS--DGRVA-----------------  426 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~----lL~~---------------~~~~e~al~~L~nLa~~~--e~r~~-----------------  426 (546)
                      .  +  ...++.+++    ++..               +-.+-..+.+|..++..+  +.+..                 
T Consensus       221 ~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~k  296 (621)
T 2vgl_A          221 E--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK  296 (621)
T ss_dssp             H--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             H--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcc
Confidence            0  0  012222222    2211               113333333333333211  11110                 


Q ss_pred             --------------------HHh--------CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcH
Q 009036          427 --------------------VLD--------SGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMA  478 (546)
Q Consensus       427 --------------------i~~--------~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v  478 (546)
                                          ++.        ..++..|..+|.+   .++..+..|+..|..++...+. ...+.  ...
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~---~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~  370 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH---RETNLRYLALESMCTLASSEFS-HEAVK--THI  370 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSC---SCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTH
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHhccCc-HHHHH--HHH
Confidence                                000        0134445555543   3467777777777777764321 11222  245


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 009036          479 EVLMRMER-VGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       479 ~~L~~ll~-~~s~~~k~~A~~lL~~L~~~  506 (546)
                      ..++..+. +.+..+|..|..+|..|...
T Consensus       371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          371 ETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence            66777777 88899999999999888754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.95  E-value=6.4e-07  Score=77.97  Aligned_cols=119  Identities=9%  Similarity=0.006  Sum_probs=88.7

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.++..|++.++.+|..|+..|..+..            ..++.|+.+|.++++.++..|+.+|.++..        
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            456778888888888888887777654432            126899999999999999999999998752        


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYH  377 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~  377 (546)
                        ...++.|+..|.+.++.+|..|+.+|..+.          ...+++.|+.+|++++..++..|+.+|.+
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              235888999999999999999999998874          23468889999988889999999888764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.93  E-value=0.0013  Score=59.61  Aligned_cols=213  Identities=14%  Similarity=0.147  Sum_probs=147.8

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC-Cch
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      +.+.+++++..|...-|.+|..|+..|..+++.-++....+     +..|+.+++ +.....-.....+++.++.. ++-
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            45678899999999999999999999999998876554433     344555554 55556656677778777652 222


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      -     .+.+|.|..-++-|+++++.+...+|..++..+..    ...+.+..+..+|.+.+..-+-.|+..|..|   .
T Consensus       105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~al---G  172 (253)
T 2db0_A          105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAM---G  172 (253)
T ss_dssp             H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC---C
T ss_pred             H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---h
Confidence            2     13567777777788999999999999988754321    1134567788888888766666666555544   6


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          383 SNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      +|..+-+.- .+|.|..+|.+++  ++..|+.+|.+|+.....-.        +.+...+....+.|..++......|..
T Consensus       173 en~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR--------kii~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          173 ENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR--------KVVIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             TTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH--------HHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            666666655 7899999999877  88899999999997544322        222333333333567777777777766


Q ss_pred             Hhc
Q 009036          461 LSH  463 (546)
Q Consensus       461 L~~  463 (546)
                      +..
T Consensus       244 l~l  246 (253)
T 2db0_A          244 LLL  246 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.90  E-value=1.4e-06  Score=75.82  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHH
Q 009036          268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      ...++.|+.+|.++++.++..|+.+|.++..           ..++.|+..|++.++.+|..|+.+|..+..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            4567888899998888888888888776532           136899999999999999999999998742        


Q ss_pred             hhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHH
Q 009036          348 GVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGN  416 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~n  416 (546)
                        ..+++.|+.+|.+.++.++..|+++|.++..          ..+++.|+.++.+.+  ++..|+.+|..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              3468899999999999999999999998852          246888999997654  77778777654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.88  E-value=0.00023  Score=68.35  Aligned_cols=183  Identities=11%  Similarity=0.023  Sum_probs=131.7

Q ss_pred             hHHHHHHHccCCHHHHHHHHHHHhhcccc-cchh-hHHhhcCChHHHHHhhc-cCCHHHHHHHHHHHHHhhcCchhHHHH
Q 009036          312 VPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNK-TAIGVLGALPPLLHLLK-SDSERTQHDSALALYHLSLVKSNRTKL  388 (546)
Q Consensus       312 l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k-~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~n~~~i  388 (546)
                      .+.+.+.+.+.+...|..|+..|..+... +... ..+  ...++.|...|. +.+..++..|+.+|..|+..-.....-
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            34577888888999999999999888654 2211 001  235677788884 889999999999999998632111111


Q ss_pred             HhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-C
Q 009036          389 VKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-G  465 (546)
Q Consensus       389 v~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~  465 (546)
                      .-...++.|++.+.+..  +++.+..+|..++.... -.     ..++.|...|.+   .++.+++.++.+|..+... .
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE-----AQQESIVESLSN---KNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH-----HHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH-----HHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcC
Confidence            22237888888888754  88999999999887532 11     256777777776   4689999999999996543 2


Q ss_pred             hh--hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          466 LR--FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       466 ~~--~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ..  ....+.  .+++.|+.++.+.++++|..|..+|..|...-
T Consensus       166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            22  233333  27899999999999999999999999987544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.85  E-value=0.00044  Score=72.22  Aligned_cols=232  Identities=12%  Similarity=0.064  Sum_probs=153.1

Q ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHHHHHhcC--ChHHHHHHHcc---------------C--CHHHHHHHHH
Q 009036          273 ALRSLIIS-RYTNVQVNAVAALVNLSLEKINKMLIVRSG--LVPPIVDVLMA---------------G--SAEAQEHACG  332 (546)
Q Consensus       273 ~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g--~l~~Lv~lL~~---------------~--~~~~~~~Aa~  332 (546)
                      .++..|.. .+...+..++.+|..|...++.|..+.+.+  .++.++.+++.               +  ..+++-+++-
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            34445554 345667778888999988899998887543  46777665541               1  3567889999


Q ss_pred             HHhhcccccchhhHHhhcCCh--HHHHHhhcc-CCHHHHHHHHHHHHHhhcCc-----hhHHHH-HhcCcHHHHHHHHhC
Q 009036          333 AIFSLALDDQNKTAIGVLGAL--PPLLHLLKS-DSERTQHDSALALYHLSLVK-----SNRTKL-VKLGSVNALLGMVNS  403 (546)
Q Consensus       333 ~L~~Ls~~~~~k~~i~~~g~l--~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~-----~n~~~i-v~~Gav~~Lv~lL~~  403 (546)
                      +++.|+..++....+...+..  ..|+.+++. ...++.+.++.+|.||....     .....+ +..++ ..+++.|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999998776666655533  677777776 46889999999999998754     122323 33345 445555543


Q ss_pred             -----chHHHH-------HHHHHHHhhC---------------Cc---------ccHHHHHhC--CcHHHHHHHHccCC-
Q 009036          404 -----GHMTGR-------VLLILGNLAS---------------CS---------DGRVAVLDS--GGVECLVGMLRKGT-  444 (546)
Q Consensus       404 -----~~~~e~-------al~~L~nLa~---------------~~---------e~r~~i~~~--g~i~~Lv~lL~~~~-  444 (546)
                           +++.+.       --..+..|++               .|         ||...+.+.  ..+..|+++|.+.. 
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence                 222222       1111122221               11         122234332  27789999997410 


Q ss_pred             ------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          445 ------ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       445 ------~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                            ..++....-|+.=+..+++..+..+.++.+.|+-..+++|+.+.++++|..|..+++.+-.
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                  0235555666666777777667888899999999999999999999999999999977643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=1.8e-05  Score=62.60  Aligned_cols=50  Identities=10%  Similarity=0.091  Sum_probs=41.5

Q ss_pred             CCceeCccccccc--CCCeecCCC-----ccccHHHHHHHHhcC-CCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLM--ADPVVVSSG-----HTFERACAHVCKTLG-FTPTLVDGTTPDF   92 (546)
Q Consensus        43 p~~~~CpI~~~~m--~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~~~~~~   92 (546)
                      .++..|+||++-+  .+|++++|+     |.|-+.||.+|+... ...||.|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3556799999877  579999996     999999999999864 4689999987654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.81  E-value=0.00026  Score=70.50  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=120.2

Q ss_pred             HHHhhccCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCcHHHHHHHHhCc--hHHHHHHHHHHHhhCCcccHHHHHhC-C
Q 009036          356 LLHLLKSDSERTQHDSALALYH-LSLVKSNRTKLVKLGSVNALLGMVNSG--HMTGRVLLILGNLASCSDGRVAVLDS-G  431 (546)
Q Consensus       356 Lv~lL~~~~~~~~~~A~~aL~~-Ls~~~~n~~~iv~~Gav~~Lv~lL~~~--~~~e~al~~L~nLa~~~e~r~~i~~~-g  431 (546)
                      +++.|.+.+.+.++.++.-|.. +..+..-..+++..+++..|+.++...  +.+.++|.+|.+|-....|-..++++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            3455566778888888888888 556778899999999999999999764  49999999999999999999999864 5


Q ss_pred             cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHH--------HCC--cHHHHHHHHh---cCCHHHHHHHHH
Q 009036          432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAA--------AAG--MAEVLMRMER---VGSEHVKEKAKR  498 (546)
Q Consensus       432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~--------~~g--~v~~L~~ll~---~~s~~~k~~A~~  498 (546)
                      .|..|..++.+   ....+...|+.+|..+|..++....++.        ..|  -...|+.+++   +++..++.+|..
T Consensus       203 fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          203 TIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            88999999886   4688999999999999986543332222        222  2578999998   789999999999


Q ss_pred             HHHHhhcCCcc
Q 009036          499 MLELMKGRAEE  509 (546)
Q Consensus       499 lL~~L~~~~~~  509 (546)
                      +|-.+-...++
T Consensus       280 LIN~lL~~apd  290 (339)
T 3dad_A          280 LINKTLAALPD  290 (339)
T ss_dssp             HHHHHHHHCSS
T ss_pred             HHHHHHhcCCC
Confidence            99777655543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.76  E-value=0.00042  Score=69.02  Aligned_cols=154  Identities=14%  Similarity=0.056  Sum_probs=124.6

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      -....++.+|.+++.++...++..|..+..++...-..+++.+++..|+......+.+.+..++.+|.+|-.+......+
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv  197 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence            45678999999899999999999999965566778888899999999999999999999999999999998887777666


Q ss_pred             Hh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhh--------c--CChHHHHHhhc---cCCHHHHHHH
Q 009036          307 VR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGV--------L--GALPPLLHLLK---SDSERTQHDS  371 (546)
Q Consensus       307 ~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~--g~l~~Lv~lL~---~~~~~~~~~A  371 (546)
                      ++ ...|..|..++.+....+...|+.+|..++...+ +...+..        .  .-+..|+.+|.   ..+.+++.+|
T Consensus       198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            64 4678888888888889999999999999877654 3222221        1  24789999997   5688998888


Q ss_pred             HHHHHHhhc
Q 009036          372 ALALYHLSL  380 (546)
Q Consensus       372 ~~aL~~Ls~  380 (546)
                      ...|-.+..
T Consensus       278 mtLIN~lL~  286 (339)
T 3dad_A          278 VTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            876555543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.73  E-value=4.4e-06  Score=70.98  Aligned_cols=45  Identities=13%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             eeCcccccccCCCe-----------------e-cCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMADPV-----------------V-VSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        46 ~~CpI~~~~m~dPV-----------------~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      -.|+||++-|.+|.                 + ++|||.|++.||.+|+.. +..||.|+....
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            36999999999853                 2 489999999999999985 558999987643

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.57  E-value=0.011  Score=53.67  Aligned_cols=213  Identities=14%  Similarity=0.137  Sum_probs=148.0

Q ss_pred             CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhh
Q 009036          268 PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKT  345 (546)
Q Consensus       268 ~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~  345 (546)
                      ..++..++.+|+.+-..+|.+|+.+|.+++.. ++-...     .+..|+.+++ +....+...-+.++..++.....  
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--  103 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--  103 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--
Confidence            45788899999999999999999999999875 444433     3445666665 44667766777788777653211  


Q ss_pred             HHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHH
Q 009036          346 AIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       346 ~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~  425 (546)
                       +. .+.+|.|+.=.+-++++.+.+...+|-.+....+.    .-.+++.-+..++.+++ ...-+.+|.-+..-.++..
T Consensus       104 -~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~  176 (253)
T 2db0_A          104 -LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSF  176 (253)
T ss_dssp             -HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTH
T ss_pred             -HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCc
Confidence             11 23556666666668999999999999998874321    22245667888888876 3333444444444333332


Q ss_pred             HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                      ..+ ...+|.|..+|..   .+.-++..|+.+|.+++.-++..+.++      ...++-+.+.++-++.+..+.|..|.
T Consensus       177 ~yv-~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          177 KYV-NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHH-GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             ccc-CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            222 3578999999988   568999999999999999887777754      34455567778888888888887665

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.44  E-value=0.0041  Score=63.17  Aligned_cols=246  Identities=13%  Similarity=0.065  Sum_probs=151.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      .+..+++.+.+.+...+.-..-.+..+++..++.  .+    ++..|.+-+.++++-++-.|+.+|.++...+-..    
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~----  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ----  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence            3455678889999988888888888888874332  12    3677888888999999999999999986443211    


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHH
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTK  387 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~  387 (546)
                        ...+.+...|.+.++.+|..|+-+...|....  .+.+  .+.+..+-+++.+.++-++-+|+.+|+.++..+..   
T Consensus       139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---  209 (355)
T 3tjz_B          139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---  209 (355)
T ss_dssp             --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred             --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence              23455666778889999999999988876543  2222  36889999999999999999999999999875421   


Q ss_pred             HHhcCcHHHHHHHHhCch-----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          388 LVKLGSVNALLGMVNSGH-----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~~-----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                           ++..|+..+..+.     .+-..+.++..++..++..   .....+..|...|++   .++.+.-.|+.++..+.
T Consensus       210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~---~~~aVvyEa~k~I~~l~  278 (355)
T 3tjz_B          210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRN---KHEMVVYEAASAIVNLP  278 (355)
T ss_dssp             -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCC---SSHHHHHHHHHHHTC--
T ss_pred             -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcC---CChHHHHHHHHHHHhcc
Confidence                 3445555554431     2222333333333322000   112344555555655   56888888888887775


Q ss_pred             cCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          463 HGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       463 ~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ..+..   ..  ..++..|..++.+.++.+|=.|...|..+....+
T Consensus       279 ~~~~~---~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P  319 (355)
T 3tjz_B          279 GCSAK---EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP  319 (355)
T ss_dssp             --------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred             CCCHH---HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence            42211   11  2246778888888889999888888877765443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.44  E-value=0.01  Score=67.23  Aligned_cols=201  Identities=13%  Similarity=0.076  Sum_probs=138.0

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAI  347 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i  347 (546)
                      .+++.|..+|..++..+.+.|+.+|..+.....|..      ++..|+..+.+ .+..++..++..|..+..        
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------  537 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------  537 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------
Confidence            357888888888887777777777776654444433      34566665543 477888888888887643        


Q ss_pred             hhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCccc
Q 009036          348 GVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDG  423 (546)
Q Consensus       348 ~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~  423 (546)
                      +....++.+++.|.. .++-++..++.++.--+....|.      .+|+.|++.+.+   ..++..|+..|..++...+ 
T Consensus       538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-  610 (963)
T 4ady_A          538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-  610 (963)
T ss_dssp             TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence            344577888888875 56777666666655333322221      246666666643   2388888888888765432 


Q ss_pred             HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009036          424 RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELM  503 (546)
Q Consensus       424 r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L  503 (546)
                             ..++.++.+|...  .++.++..|+.+|..+|.++.. ..      ++..|..+..+.++.++..|...|-.+
T Consensus       611 -------e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          611 -------TTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             -------SSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence                   4577788777664  4689999999999999876532 22      467888888899999999999888877


Q ss_pred             hcC
Q 009036          504 KGR  506 (546)
Q Consensus       504 ~~~  506 (546)
                      -..
T Consensus       675 g~g  677 (963)
T 4ady_A          675 LIQ  677 (963)
T ss_dssp             STT
T ss_pred             hcC
Confidence            643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.35  E-value=0.0034  Score=71.72  Aligned_cols=264  Identities=15%  Similarity=0.096  Sum_probs=178.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC----ch
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK----IN  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~----~n  302 (546)
                      ..++.+++.+...+...+..++..|..+.......  .....+++..|.+.+......  +.|+.++..|+...    ..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence            34566778887666666778888888876643211  122247888888888765433  88999999888542    22


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhHHhhcCChHHHHHhhccC-CHHHHHHHHHHHHHhhc
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTAIGVLGALPPLLHLLKSD-SERTQHDSALALYHLSL  380 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~  380 (546)
                      ...++  +.++.++..+.+....+|..|..++..+... +....    ...++.|+..|.+. .=+.+..|+.+|..|+.
T Consensus        90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            22222  5788888888888888988887777766432 22211    34688888888765 56888999999999986


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhC--chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNS--GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      ....+....-...||.+.+.+-+  ++++..|..++..+|..-.|++-   ...||.|++.+.+.     +....++..|
T Consensus       164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p-----~~~~~~~~~l  235 (986)
T 2iw3_A          164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP-----TEVPETVHLL  235 (986)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT-----THHHHHHHHH
T ss_pred             HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh-----hhhHHHHHHh
Confidence            44322222222678888888876  34899999999999986555432   35789999999882     3355566665


Q ss_pred             HHHhcCCh-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCcccc
Q 009036          459 YALSHGGL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEEEE  511 (546)
Q Consensus       459 ~~L~~~~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~~~~  511 (546)
                      ..-+.-.+ ....+..   ++|.|.+=+...+..++++++-++.+|++--++..
T Consensus       236 ~~~tfv~~v~~~~l~~---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~  286 (986)
T 2iw3_A          236 GATTFVAEVTPATLSI---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ  286 (986)
T ss_dssp             TTCCCCSCCCHHHHHH---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             hcCeeEeeecchhHHH---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH
Confidence            54443221 1222222   45777777888899999999999999999776655

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0023  Score=61.89  Aligned_cols=189  Identities=8%  Similarity=0.036  Sum_probs=126.9

Q ss_pred             HHHHHccCCHHHHHHHHHHHhh-cccc-cchhhHHhh-cCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcCc---hhHHH
Q 009036          315 IVDVLMAGSAEAQEHACGAIFS-LALD-DQNKTAIGV-LGALPPLLHLL-KSDSERTQHDSALALYHLSLVK---SNRTK  387 (546)
Q Consensus       315 Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~---~n~~~  387 (546)
                      +...+.+.+..-|..|+..|.. +... .+....... ...+..|.+.+ ++.+..++..|+.+|..|+..-   .....
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556788899999999999988 7643 111100111 23467777888 6779999999999999998522   11101


Q ss_pred             HHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHH--hCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          388 LVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVL--DSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       388 iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~--~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      .. .-+++.+++.+.+..  +++.+..+|..++..-+. ....  =..+++.|+..|.+   .+..+++.++.+|..++.
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~---k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKH---KTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHH
Confidence            11 126888888888753  778888888877752211 0000  01255677777776   468999999999999886


Q ss_pred             CChhh-HHHH-HH-CCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          464 GGLRF-KGLA-AA-AGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       464 ~~~~~-~~~~-~~-~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      ..... ..+. .- ..+++.|..++.+.++.+|+.|.++|..+...-.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            43221 2221 12 4588999999999999999999999999876443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.22  E-value=0.0098  Score=62.12  Aligned_cols=226  Identities=13%  Similarity=0.138  Sum_probs=145.4

Q ss_pred             HHHhcCC-CCHHHHHHHHHHHHHHhccChhhhHHhhcCC--hHHHHHHHHc----c-----------C--CHHHHHHHHH
Q 009036          232 FVQKLKS-PQVHEVEEALISLRKLTRSREETRVSLCTPR--LLLALRSLII----S-----------R--YTNVQVNAVA  291 (546)
Q Consensus       232 lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g--~i~~Lv~lL~----s-----------~--~~~v~~~A~~  291 (546)
                      +++.|.. .+.+.+.-++..|..+.+. +..|..+.+.+  .++.++..+.    +           +  ..+++-.++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            4444544 2345566788888888875 67888887643  4677655433    1           1  2456788899


Q ss_pred             HHHHhhcCCchHHHHHhcCCh--HHHHHHHccC-CHHHHHHHHHHHhhccccc--chh----hHHhhcCChHHHHHhhcc
Q 009036          292 ALVNLSLEKINKMLIVRSGLV--PPIVDVLMAG-SAEAQEHACGAIFSLALDD--QNK----TAIGVLGALPPLLHLLKS  362 (546)
Q Consensus       292 ~L~nLs~~~~nk~~i~~~g~l--~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~--~~k----~~i~~~g~l~~Lv~lL~~  362 (546)
                      ++.-|+.+++....+...+..  +.|+.+++.. ..++...+..+|.||....  +.+    ..+...++ ..++..|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999988777777766543  6777778865 6889999999999998754  112    22222334 556666654


Q ss_pred             ---CCHHHHHHHHH-------HHHHhhcC------------------------chhHHHHHhc--CcHHHHHHHHhCc--
Q 009036          363 ---DSERTQHDSAL-------ALYHLSLV------------------------KSNRTKLVKL--GSVNALLGMVNSG--  404 (546)
Q Consensus       363 ---~~~~~~~~A~~-------aL~~Ls~~------------------------~~n~~~iv~~--Gav~~Lv~lL~~~--  404 (546)
                         .++++....-.       .+..|+++                        .+|..++-+.  .+++.|+++|...  
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence               35555333221       12222221                        2333344333  5778899999731  


Q ss_pred             --------h--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 009036          405 --------H--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALS  462 (546)
Q Consensus       405 --------~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~  462 (546)
                              +  +..-|+-=|..++. .|+||..+-+-|+-..++++|.+   .+++++.+|+.++-.+-
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h---~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH---SDSRVKYEALKATQAII  475 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC---SSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence                    2  33445555566664 78888877778999999999988   57999999988876553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.05  E-value=0.036  Score=56.24  Aligned_cols=208  Identities=12%  Similarity=0.051  Sum_probs=132.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV  349 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  349 (546)
                      +..-+++++.++|...+.-..-.+.+++..++...     =++..|..=++++++-+|..|.++|.++...+-.      
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~------  137 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML------  137 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH------
Confidence            34556778899999999988888888877632221     1456777778889999999999999998543311      


Q ss_pred             cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHH
Q 009036          350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAV  427 (546)
Q Consensus       350 ~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i  427 (546)
                      ....+.+.+.|.+.++.+++.|+.+.++|......   +++ +.+..+.+++.+.+  +...|+.+|..++..+  +.  
T Consensus       138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~--  209 (355)
T 3tjz_B          138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL--  209 (355)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH--
Confidence            12344566777788999999999999999764322   343 68999999998866  7889999999998643  21  


Q ss_pred             HhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          428 LDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       428 ~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                          .+..|+..+..+...++..+-.-+.++..++..+ +.     .....++.|..++++.++.+.-.|+.++-.|..
T Consensus       210 ----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          210 ----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             ----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence                3455566555532224555555555554444433 11     112245666666777777777666666666654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.024  Score=55.34  Aligned_cols=183  Identities=15%  Similarity=0.133  Sum_probs=118.5

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccChhhh--HH-hhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC---c-hH
Q 009036          232 FVQKLKSPQVHEVEEALISLRKLTRSREETR--VS-LCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLEK---I-NK  303 (546)
Q Consensus       232 lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~-l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~---~-nk  303 (546)
                      +-.+|.+.+|..|.+|+..|..+........  .. +.. ...++.+...+.+.+..++..++.+|..+...-   . .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            4578999999999999999998776433211  11 111 234566777888889999999999988776531   1 11


Q ss_pred             HHH--HhcCChHHHHHH-HccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          304 MLI--VRSGLVPPIVDV-LMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       304 ~~i--~~~g~l~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      ...  .-..+++.|++- |.+....++..|..+|..+........     ..++.++..+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            111  123467777764 777888999888888877654322211     134566777888899999999988887654


Q ss_pred             C-c-h--hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC
Q 009036          381 V-K-S--NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC  420 (546)
Q Consensus       381 ~-~-~--n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~  420 (546)
                      . . .  +-...+. .+++.+..+|.+.+  +++.|..++..|-..
T Consensus       169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            2 1 1  1111121 24556777777654  899998888777653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.86  E-value=0.071  Score=61.00  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=150.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR-YTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~-~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      .++.++..+.+....++..|...+..+.+.-+..-  +  ..++|.|+..|.+. ....+..|+.+|..|+...  ...+
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~  169 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV  169 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence            35666777777778888888888877776432221  1  35689999988755 6899999999999998643  2333


Q ss_pred             Hh--cCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchh
Q 009036          307 VR--SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSN  384 (546)
Q Consensus       307 ~~--~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n  384 (546)
                      ..  ...||.+.+.+.+..++++..|..++..++..-.|+..   ...+|.|++.+.+.+.  .-.++..|..-....+.
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v  244 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV  244 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence            22  35788888888888999999999999888775555432   3578999999987632  34444444443333332


Q ss_pred             HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          385 RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       385 ~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      -...... .+|.|..-|....  ++.+++-++.|||.--+....+..  ...+|.|-+.....  .++++++.|-.++..
T Consensus       245 ~~~~l~~-~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~--~~pe~r~~~~~a~~~  321 (986)
T 2iw3_A          245 TPATLSI-MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI--ADPEAREVTLRALKT  321 (986)
T ss_dssp             CHHHHHH-HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC--CSHHHHHHHHHHHHH
T ss_pred             cchhHHH-HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc--CCHHHHHHHHHHHHH
Confidence            2222221 4556666665433  788899999999987666555543  45666666666664  569999988888877


Q ss_pred             Hh
Q 009036          461 LS  462 (546)
Q Consensus       461 L~  462 (546)
                      |-
T Consensus       322 l~  323 (986)
T 2iw3_A          322 LR  323 (986)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.77  E-value=0.13  Score=58.30  Aligned_cols=238  Identities=11%  Similarity=0.064  Sum_probs=153.7

Q ss_pred             hhHHHHHHhcC---CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC--------HHHHHHHHHHHHH
Q 009036          227 EQEDYFVQKLK---SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY--------TNVQVNAVAALVN  295 (546)
Q Consensus       227 ~~i~~lv~~L~---s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~--------~~v~~~A~~~L~n  295 (546)
                      +.+..|-..|.   +++..++.-|+..|..+......        .++..|...|.+++        ..++..|+..|+.
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            44556666665   56777888888888877654321        25777888887655        5677777777776


Q ss_pred             hhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhc-cCCHHHHHHHHHH
Q 009036          296 LSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLK-SDSERTQHDSALA  374 (546)
Q Consensus       296 Ls~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~-~~~~~~~~~A~~a  374 (546)
                      ......+.      .+++.|..+|...+..++..|+.+|..+-....+.      .++..|+..+. ..+..+++.++.+
T Consensus       464 a~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e~~~e~vrR~aalg  531 (963)
T 4ady_A          464 AAMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQETQHGNITRGLAVG  531 (963)
T ss_dssp             HSTTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HhcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhccCcHHHHHHHHHH
Confidence            54332222      24677888888777777777777776553322222      24566666654 4577888888888


Q ss_pred             HHHhhcCchhHHHHHhcCcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHH
Q 009036          375 LYHLSLVKSNRTKLVKLGSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQ  451 (546)
Q Consensus       375 L~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~  451 (546)
                      |.-+....+        ..++.+++.|..   +.++..++.++..-+....+.      .+|+.|++.+.+.  .++.++
T Consensus       532 LGll~~g~~--------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d--~~d~VR  595 (963)
T 4ady_A          532 LALINYGRQ--------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSD--SNDDVR  595 (963)
T ss_dssp             HHHHTTTCG--------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHC--SCHHHH
T ss_pred             HHhhhCCCh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccC--CcHHHH
Confidence            887755322        357777777753   225665665555433322221      2567777777664  457889


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHCCcHHHHHH-HHhcCCHHHHHHHHHHHHHhhcCCcc
Q 009036          452 ESCVSVLYALSHGGLRFKGLAAAAGMAEVLMR-MERVGSEHVKEKAKRMLELMKGRAEE  509 (546)
Q Consensus       452 e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~-ll~~~s~~~k~~A~~lL~~L~~~~~~  509 (546)
                      ..|+..|..+..+++         ..++.++. +.+++++.+|..|..+|-.++...+.
T Consensus       596 raAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~  645 (963)
T 4ady_A          596 RAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL  645 (963)
T ss_dssp             HHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence            999999988876543         13445555 56788999999999999888755543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.75  E-value=0.0037  Score=65.88  Aligned_cols=239  Identities=14%  Similarity=0.106  Sum_probs=159.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChh--hhHHhhcCChHHHHHHHHc-------cCC---HHHHHHHHHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREE--TRVSLCTPRLLLALRSLII-------SRY---TNVQVNAVAALVN  295 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~l~~~g~i~~Lv~lL~-------s~~---~~v~~~A~~~L~n  295 (546)
                      .++.|+..|-++.|++|--|+-.|+++.+....  .|..-....+.-.|+-+|.       ..|   ..|++.|+.+|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            778999999999999999999999998876432  1211111233333333332       122   4689999999998


Q ss_pred             hhcC-CchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh-hcCChHHHHHhhccCCHHHHHHHHH
Q 009036          296 LSLE-KINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG-VLGALPPLLHLLKSDSERTQHDSAL  373 (546)
Q Consensus       296 Ls~~-~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~~~~~A~~  373 (546)
                      + .+ +..      ..++..|+..+....-+++.-++-.|.++      ++.+. -.++++.++..|.+.+.+++..|+.
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence            8 64 222      23455555555677899999999999998      11111 2457788888888889999999999


Q ss_pred             HHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHH
Q 009036          374 ALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSES  449 (546)
Q Consensus       374 aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~  449 (546)
                      +|.-++ .++....     ++..|-+.|.+.+    .....+..|..|+..+..  +-.....+|.|...|+..   -..
T Consensus       322 tLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt---ITS  390 (800)
T 3oc3_A          322 LLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP---VPE  390 (800)
T ss_dssp             HHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS---SHH
T ss_pred             Hhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC---cHH
Confidence            999888 2211111     3333444444322    567788888888876631  111246788888888884   478


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHCCcHH-HHHHHHhcCCHHHHHHHHHHHH
Q 009036          450 TQESCVSVLYALSHGGLRFKGLAAAAGMAE-VLMRMERVGSEHVKEKAKRMLE  501 (546)
Q Consensus       450 ~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~-~L~~ll~~~s~~~k~~A~~lL~  501 (546)
                      ++..++.+|..+.  .   ..      ++. .+..++-..++.+++.+..+.+
T Consensus       391 VR~AVL~TL~tfL--~---~~------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          391 VRTSILNMVKNLS--E---ES------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHTTTCC--C---HH------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--h---hh------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8999988887766  1   11      222 3344577788999999988876

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.55  E-value=0.0029  Score=48.87  Aligned_cols=47  Identities=11%  Similarity=0.035  Sum_probs=37.0

Q ss_pred             ceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036           45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD   91 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~   91 (546)
                      .-.|+||.+++..=+.- .|||.|=..||.+||+.. ...||.|+....
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            34699999998743332 799999999999999754 468999987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.14  E-value=0.0073  Score=44.57  Aligned_cols=48  Identities=15%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CceeCcccccccCCCeecCCCc-----cccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADPVVVSSGH-----TFERACAHVCKTL-GFTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~   91 (546)
                      +.-.|.||++-..+|.+.||..     -|=+.|+.+|+.. ++..||.|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4456999999888999889753     7999999999975 6678999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.13  E-value=0.0019  Score=53.19  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             CceeCccccc-ccCCCee--cCCCccccHHHHHHH
Q 009036           44 GEFLCPVSGS-LMADPVV--VSSGHTFERACAHVC   75 (546)
Q Consensus        44 ~~~~CpI~~~-~m~dPV~--~~~G~ty~r~~i~~~   75 (546)
                      +++.|+||.+ .+++||.  +.|||+||+.|++.+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4678999996 5899999  999999999999984

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.12  E-value=0.055  Score=62.38  Aligned_cols=255  Identities=10%  Similarity=0.078  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhhcCCchHHHHHhc-----C
Q 009036          242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNLSLEKINKMLIVRS-----G  310 (546)
Q Consensus       242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~-----g  310 (546)
                      ..+..|...|..++....   ..+. .-+++.+...+.      +.+...++.|+.++..++..-.....-...     .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            356677777777776532   1111 123444444554      457788899999999887531100000000     1


Q ss_pred             ChH----HHHHHHccC---CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          311 LVP----PIVDVLMAG---SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       311 ~l~----~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      ..+    .++..|.+.   .+.+|..|+++|..++..- .+..  -...++.++..|.+.+..++..|+.+|.+++....
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            112    223334555   8999999999999987642 1221  23467888888888889999999999999987321


Q ss_pred             ---------hHHHHHhc--CcHHHHHHHHhCc-----h--HHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccC
Q 009036          384 ---------NRTKLVKL--GSVNALLGMVNSG-----H--MTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKG  443 (546)
Q Consensus       384 ---------n~~~iv~~--Gav~~Lv~lL~~~-----~--~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~  443 (546)
                               .+..+...  ..+..|+.++...     .  ..+.++.+|..++....  +.+..  ...++.|+.++...
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~--~~~~p~~~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE--DSIQPLFPQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT--TTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHH
Confidence                     12223222  4666677777663     1  23456666665543111  01111  12334555544331


Q ss_pred             --CCCCHHHHHHHHHHHHHHhcC-Ch-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          444 --TELSESTQESCVSVLYALSHG-GL-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       444 --~~~s~~~~e~Av~~L~~L~~~-~~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                        ++.+......++.+|..++.. ++ .......  .+++.+..+++.......+.+..++..|....
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence              123566667778888777764 32 2222222  36788888888776777777888877776543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.08  E-value=0.096  Score=50.76  Aligned_cols=175  Identities=16%  Similarity=0.090  Sum_probs=116.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCC-hHHHHHHHHccCCHHHHHHHHHHHHHhhc----C-CchH
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPR-LLLALRSLIISRYTNVQVNAVAALVNLSL----E-KINK  303 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g-~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~----~-~~nk  303 (546)
                      +.+...|-+.++..+.+|+..|......+++  ..+...+ ++..+.--+.+.+..+...++.+|..+..    . ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            4566677778999999999999987654432  2222212 23433334457788888888877766532    1 1111


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      ..-+ .-.+|.|++-|.+....+|..+-.+|..+....      .-...++.++.-+++.|.+.+..++..|.++-....
T Consensus       127 ~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          127 QEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            1111 236899999998888999998888887764321      112356777888888999999999988888754222


Q ss_pred             hHHHHHhcCcH---HHHHHHHhCch--HHHHHHHHHHHh
Q 009036          384 NRTKLVKLGSV---NALLGMVNSGH--MTGRVLLILGNL  417 (546)
Q Consensus       384 n~~~iv~~Gav---~~Lv~lL~~~~--~~e~al~~L~nL  417 (546)
                      ..    ...++   +.+..++.+.+  +++.|+.++..+
T Consensus       200 ~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          200 IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            11    23467   99999998765  888888887644

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.97  E-value=0.16  Score=50.31  Aligned_cols=137  Identities=10%  Similarity=0.075  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHHhC--chHHHHHHHHHHHhhCCcc---cHHHHHhCCcHHH
Q 009036          363 DSERTQHDSALALYHLSLVKSNRTKLVKL--GSVNALLGMVNS--GHMTGRVLLILGNLASCSD---GRVAVLDSGGVEC  435 (546)
Q Consensus       363 ~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~--Gav~~Lv~lL~~--~~~~e~al~~L~nLa~~~e---~r~~i~~~g~i~~  435 (546)
                      ..+..+..++++++|+..+...+..+...  .+++.+...+.+  .+++-.+..++.|++....   ..+..  ..++..
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~  237 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL  237 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence            35667888999999999988888777754  233333333332  3478888899999986311   11111  114455


Q ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 009036          436 LVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLELM  503 (546)
Q Consensus       436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~~L  503 (546)
                      +..++...  .+.++...++.+|.+|...+....+++...|+...+-.+... ..+++.+.|..+|..|
T Consensus       238 l~~il~~~--~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l  304 (304)
T 3ebb_A          238 ISTILEVV--QDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL  304 (304)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred             HHHHHhcc--CCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence            55666553  468888999999999988777788888888877777666655 5788999999888654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=95.91  E-value=0.0056  Score=49.41  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=37.8

Q ss_pred             eCcccccccCCCe-ecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           47 LCPVSGSLMADPV-VVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        47 ~CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      .|++|.-.+..=. ++||+|.||..|+..|...+...||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888887666544 469999999999999998888899999876543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.51  E-value=0.29  Score=48.41  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=110.7

Q ss_pred             hHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHH----HHHcc-CCHHHHHHHHHHHhhcccccchh
Q 009036          270 LLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIV----DVLMA-GSAEAQEHACGAIFSLALDDQNK  344 (546)
Q Consensus       270 ~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv----~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k  344 (546)
                      .+..|.+++ ....+.+--++.++.-+..++.....+.+...-..++    ..+.. +.+..+..+++++.|+......+
T Consensus       104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            466777776 5555566667777777666666555555433323333    33332 35777899999999999888777


Q ss_pred             hHHhh--cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch---hHHHHHhcCcHHHHHHHHh---CchHHHHHHHHHHH
Q 009036          345 TAIGV--LGALPPLLHLLKSDSERTQHDSALALYHLSLVKS---NRTKLVKLGSVNALLGMVN---SGHMTGRVLLILGN  416 (546)
Q Consensus       345 ~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~---n~~~iv~~Gav~~Lv~lL~---~~~~~e~al~~L~n  416 (546)
                      ..+..  ...++.+...+.+.+..++..++.+++|++...-   ......  -++..+..++.   +.+...+++.+|.+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvALGt  260 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVALGT  260 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            76654  2355555555556688899999999999987321   111101  13334444443   34478889999999


Q ss_pred             hhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          417 LASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       417 La~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                      |...+.....+.+.=.+...++-+.+.+ ...++.+.|-.
T Consensus       261 L~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~~~  299 (304)
T 3ebb_A          261 LISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECCRF  299 (304)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHHHH
T ss_pred             HHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHHHH
Confidence            9987655555555333344444444432 23555555433

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.29  E-value=0.0023  Score=63.56  Aligned_cols=48  Identities=15%  Similarity=0.125  Sum_probs=37.4

Q ss_pred             CceeCcccccccCC----Cee----cCCCccccHHHHHHHHhcC----------CCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMAD----PVV----VSSGHTFERACAHVCKTLG----------FTPTLVDGTTPD   91 (546)
Q Consensus        44 ~~~~CpI~~~~m~d----PV~----~~~G~ty~r~~i~~~~~~~----------~~~cp~~~~~~~   91 (546)
                      ....|+||...+.+    |-.    ..|||.|-..||.+|++..          ...||-|+++++
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            34569999999998    544    3799999999999999741          137999987653

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.019  Score=57.82  Aligned_cols=64  Identities=14%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             CceeCcccccccCCCeec-CCCcc--ccHHHHHHHHhc-CCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHT--FERACAHVCKTL-GFTPTLVDGTTPDFSTVIPNLALKSTILN  107 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn~~l~~~i~~  107 (546)
                      -.+.|||+...|+.||-- .|-|.  ||...+...... +.-.||.|.+.....+|+.+..+.++++.
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            347899999999999995 89997  999998775544 44489999999998899999888777653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.76  Score=44.40  Aligned_cols=186  Identities=11%  Similarity=0.092  Sum_probs=114.7

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccc---hhhHHh-h-cCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc---
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ---NKTAIG-V-LGALPPLLHLLKSDSERTQHDSALALYHLSLVK---  382 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---~k~~i~-~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~---  382 (546)
                      -+| |-+-|.+.+-..|..|...|..+.....   ...... . ......+-..+.+.|..+...++.+|..++..-   
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            345 5577888899999999888876543321   111111 1 234556667788889999999999998886521   


Q ss_pred             ---hhHHHHHhcCcHHHHHHH-HhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHH
Q 009036          383 ---SNRTKLVKLGSVNALLGM-VNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVS  456 (546)
Q Consensus       383 ---~n~~~iv~~Gav~~Lv~l-L~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~  456 (546)
                         .......-...++.|++- |.+..  ++..++.+|..++........     ++..++..+..   .++.++..++.
T Consensus        90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~---Knpkv~~~~l~  161 (278)
T 4ffb_C           90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK---KLPKLIAAAAN  161 (278)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC---SCHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc---cCHHHHHHHHH
Confidence               112222333567777765 55433  777788777766532211111     12344444444   57899999999


Q ss_pred             HHHHHhc--CCh--hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          457 VLYALSH--GGL--RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       457 ~L~~L~~--~~~--~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .|..+..  +..  .....+..  +++.+..++.+.++.+|..|..++-.|-..-
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8887754  211  11222221  4567888899999999999999998776543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.13  E-value=0.76  Score=52.78  Aligned_cols=214  Identities=11%  Similarity=0.076  Sum_probs=119.2

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhhHHhhcC-----ChHHHH----HHHHccC---CHHHHHHHHHHHHHhhcCCchHHH
Q 009036          238 SPQVHEVEEALISLRKLTRSREETRVSLCTP-----RLLLAL----RSLIISR---YTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~-----g~i~~L----v~lL~s~---~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      +.+|..++.|+..+..++....... .-...     .+.+.+    +..|.++   ++.++..|+++|..++..- ....
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~-~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITN-AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBT-TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccc-CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence            5678899999999999985421111 00111     344433    3345555   8899999999999988642 2222


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc---------hhhHHhh--cCChHHHHHhhccCC---HH--HHH
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ---------NKTAIGV--LGALPPLLHLLKSDS---ER--TQH  369 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~l~~Lv~lL~~~~---~~--~~~  369 (546)
                      +  ...++.++..|.+.+..++.+|+.+|.+++...+         .+..+..  ...++.|+.++....   .+  ...
T Consensus       494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence            1  2367888888888889999999999999876421         2333321  346667777776631   11  223


Q ss_pred             HHHHHHHHhhcC--chhHHHHHhcCcHHHHHHHHh----Cc---hHHHHHHHHHHHhhCC--cccHHHHHhCCcHHHHHH
Q 009036          370 DSALALYHLSLV--KSNRTKLVKLGSVNALLGMVN----SG---HMTGRVLLILGNLASC--SDGRVAVLDSGGVECLVG  438 (546)
Q Consensus       370 ~A~~aL~~Ls~~--~~n~~~iv~~Gav~~Lv~lL~----~~---~~~e~al~~L~nLa~~--~e~r~~i~~~g~i~~Lv~  438 (546)
                      .+..+|..+...  ...... .. ..++.|+..+.    ++   .....++.+|..++..  ++... -.....++.+..
T Consensus       572 ~l~~al~~vv~~~~~~~~p~-~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~  648 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPL-FP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLT  648 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGG-HH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHH
Confidence            445555554331  111111 11 23444554443    22   2555567777766653  22222 223345677777


Q ss_pred             HHccCCCCCHHHHHHHHHHHHHH
Q 009036          439 MLRKGTELSESTQESCVSVLYAL  461 (546)
Q Consensus       439 lL~~~~~~s~~~~e~Av~~L~~L  461 (546)
                      +|...   ..+..+.+..++..+
T Consensus       649 iL~~~---~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          649 VFSED---IQEFIPYVFQIIAFV  668 (960)
T ss_dssp             HHHTT---CTTTHHHHHHHHHHH
T ss_pred             HHHhh---hHhhHHHHHHHHHHH
Confidence            77663   233455555555444

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.71  E-value=0.47  Score=45.24  Aligned_cols=147  Identities=18%  Similarity=0.183  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCC-----HHHHHHHHHHHHHhhcC--CchHHHHHhcCChHH
Q 009036          242 HEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRY-----TNVQVNAVAALVNLSLE--KINKMLIVRSGLVPP  314 (546)
Q Consensus       242 ~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~-----~~v~~~A~~~L~nLs~~--~~nk~~i~~~g~l~~  314 (546)
                      .-...|+..|+-+|. +++.|..+.++...-.|..+|...+     ..++-.++.+++.|.+.  .+.-..+.+.+++|.
T Consensus        71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl  149 (268)
T 2fv2_A           71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred             hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence            345677888888886 5789999999998888888887532     45777888899988874  344555567889999


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--------cCChHHHHHhh-ccCCHHHHHHHHHHHHHhhcCchhH
Q 009036          315 IVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--------LGALPPLLHLL-KSDSERTQHDSALALYHLSLVKSNR  385 (546)
Q Consensus       315 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--------~g~l~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~~n~  385 (546)
                      .++++..|+.-.|..|.-++..+..++..-..+..        ..++..++.-+ +..++++.++.+++-..|+.++..|
T Consensus       150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar  229 (268)
T 2fv2_A          150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR  229 (268)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999988777765444432        11222333222 3357777777777777777766655


Q ss_pred             HHHH
Q 009036          386 TKLV  389 (546)
Q Consensus       386 ~~iv  389 (546)
                      ..+-
T Consensus       230 ~aL~  233 (268)
T 2fv2_A          230 EALR  233 (268)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=93.66  E-value=0.042  Score=55.18  Aligned_cols=64  Identities=13%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             CceeCcccccccCCCeec-CCCcc--ccHHHHHHHHhcC-CCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVV-SSGHT--FERACAHVCKTLG-FTPTLVDGTTPDFSTVIPNLALKSTILN  107 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~-~~G~t--y~r~~i~~~~~~~-~~~cp~~~~~~~~~~l~pn~~l~~~i~~  107 (546)
                      =.+.|||+...|+.||-- .|-|.  ||...+....... .-.||.|.+.....+|+.+..+.+.+..
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            357899999999999995 89997  9999987765543 4489999999998899999888777664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.65  E-value=2.1  Score=42.49  Aligned_cols=194  Identities=13%  Similarity=0.110  Sum_probs=138.4

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHH----hh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVS----LC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK  300 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~  300 (546)
                      .+.+..|+..|..-+.+.+..+......+.+.....+..    +. ...++..|+.--..  +++--.+-..|.....++
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHHHHHHhH
Confidence            456678888888889999999999888888765543322    22 24455555554443  334444556677777777


Q ss_pred             chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-h-hhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-N-KTAIGV--LGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      .....|...+.+..+......++-++-..|..++..|-.... . .+.+..  ...+...-.+|.+++--.++.++..|.
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            777777777788888898899999999999999987754332 1 222222  235666778899999999999999999


Q ss_pred             HhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036          377 HLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS  421 (546)
Q Consensus       377 ~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~  421 (546)
                      .|-..+.|..-|...    .-+..++.+|.+.+  ++-.|.-++.....++
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            999988886665544    66778888888754  8888888887655443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.56  E-value=1.5  Score=41.37  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=73.3

Q ss_pred             HHHHhcCCCC-HHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc----C-------CHHHHHHHHHHHHHhh
Q 009036          231 YFVQKLKSPQ-VHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS----R-------YTNVQVNAVAALVNLS  297 (546)
Q Consensus       231 ~lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s----~-------~~~v~~~A~~~L~nLs  297 (546)
                      ..|++|++.. .+.-.+-+..|+...+.++ .-...+ ..+++..|+..|..    .       +...+..++.+|..+.
T Consensus         4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            3456665443 2222334555554444443 333444 46788888887752    1       4566778888888887


Q ss_pred             cCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhccccc
Q 009036          298 LEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD  341 (546)
Q Consensus       298 ~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~  341 (546)
                      ....+...+.. .+.+..|+..|.+.++.++..++.+|..++..+
T Consensus        83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A           83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP  127 (233)
T ss_dssp             SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred             CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence            76666666664 467889999998889999999999988877654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.36  E-value=3.3  Score=39.41  Aligned_cols=200  Identities=17%  Similarity=0.125  Sum_probs=126.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHH-------ccCC--H---HHHHHHHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLI-------ISRY--T---NVQVNAVAALV  294 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL-------~s~~--~---~v~~~A~~~L~  294 (546)
                      .+..++..|..  ++.++.|+..|..--..-+..-..+. ..|.+..|+.=+       ..+.  .   .-.-+|+..|-
T Consensus         4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            45566666653  34577777666543222222222233 477777775522       1111  1   12245666677


Q ss_pred             HhhcCCchHHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHH
Q 009036          295 NLSLEKINKMLIVRSGLVPPIVDVLMAGS-----AEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERT  367 (546)
Q Consensus       295 nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~  367 (546)
                      -++.+++.|..+.++...--|--+|+..+     .-+|..+.+++..|...++.  -..+...+.+|..++.+..++.-.
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence            78899999999999987666666676442     46788999999998876543  333346789999999999999999


Q ss_pred             HHHHHHHHHHhhcCchhHHHH-------Hhc-CcHHHHHHHHh-Cc--hHHHHHHHHHHHhhCCcccHHHHHh
Q 009036          368 QHDSALALYHLSLVKSNRTKL-------VKL-GSVNALLGMVN-SG--HMTGRVLLILGNLASCSDGRVAVLD  429 (546)
Q Consensus       368 ~~~A~~aL~~Ls~~~~n~~~i-------v~~-Gav~~Lv~lL~-~~--~~~e~al~~L~nLa~~~e~r~~i~~  429 (546)
                      |..|...+..+-.++..-..+       ... .++..++.-+. ++  .+.+..+.+-..|+.++..|+++.+
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~  234 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ  234 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888888777766554322222       111 12333333332 22  2777888888888888888887764

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.28  E-value=2.5  Score=43.08  Aligned_cols=170  Identities=18%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             HHHHHhcCCCCH-HHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009036          230 DYFVQKLKSPQV-HEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNL  296 (546)
Q Consensus       230 ~~lv~~L~s~~~-~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nL  296 (546)
                      ...+..|+++.. +...+.+..|+...+.++ .-...+. .+++..|+..|..           .+...+..++.+|..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            456777765532 323445677775555443 3334555 6788888888751           2457788888999888


Q ss_pred             hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--h-hhHH----------hhcCChHHHHHhhcc
Q 009036          297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--N-KTAI----------GVLGALPPLLHLLKS  362 (546)
Q Consensus       297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~l~~Lv~lL~~  362 (546)
                      .....+...+.. ...+..|+..|.+..+.++..|..+|..++..++  + ...+          .+..-+..++..|+.
T Consensus       148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            777666666664 4678999999999999999999999988876543  2 2222          224567888888886


Q ss_pred             -CCHHHHHHHHHHHHHhhcCch-------hHHHHHhcCcHHHHHHH
Q 009036          363 -DSERTQHDSALALYHLSLVKS-------NRTKLVKLGSVNALLGM  400 (546)
Q Consensus       363 -~~~~~~~~A~~aL~~Ls~~~~-------n~~~iv~~Gav~~Lv~l  400 (546)
                       .+.+.+..++..+-.|....+       .|.++...|..+.+-.+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l  273 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  273 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence             466775555554444544332       25566677777766653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.87  E-value=0.53  Score=45.48  Aligned_cols=135  Identities=10%  Similarity=0.023  Sum_probs=95.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhccChhhhHHhh--c-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcC
Q 009036          235 KLKSPQVHEVEEALISLRKLTRSREETRVSLC--T-PRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSG  310 (546)
Q Consensus       235 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~--~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g  310 (546)
                      .+.+.+..+...++..|..+...-...-..+.  + .-++|.|+.-+......+++.+-.+|..+..- +.+       .
T Consensus        95 r~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~  167 (266)
T 2of3_A           95 RFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K  167 (266)
T ss_dssp             HTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence            44577888888999888886532111101122  1 34789999888888888988887777666431 111       2


Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCCh---HHHHHhhccCCHHHHHHHHHHHHHhhc
Q 009036          311 LVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGAL---PPLLHLLKSDSERTQHDSALALYHLSL  380 (546)
Q Consensus       311 ~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l---~~Lv~lL~~~~~~~~~~A~~aL~~Ls~  380 (546)
                      +++.++.-+++.+..+|+..+..|..+.......    ...++   +.+..++.+.+..++..|+.++..+-.
T Consensus       168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            5667777888889999999999998875443221    23468   999999999999999999998886643

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.80  E-value=4.6  Score=46.14  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh---c--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHH
Q 009036          322 GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL---K--SDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNA  396 (546)
Q Consensus       322 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL---~--~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~  396 (546)
                      .+...++.|+.+|..++..-....    ...++.++.++   .  +.++.++..++++|..++.+-........ .+++.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~  550 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL  550 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence            455678888888888865422111    12334444433   2  24788999999999998864221111111 35666


Q ss_pred             HHHHHhCchHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          397 LLGMVNSGHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       397 Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      |+..|. +.++..|+.+|.+||.  +.+..+..  ...+..+..++.+.. .+...++.+..++..+..
T Consensus       551 l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~-~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          551 LVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGR-MKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHH
Confidence            666664 6689999999999994  34455543  346667777777642 346788888888888865

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.68  E-value=4.1  Score=46.56  Aligned_cols=210  Identities=15%  Similarity=0.064  Sum_probs=117.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHH---c--cCCHHHHHHHHHHHhhccccc-chhhHHhhcCChH
Q 009036          281 RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVL---M--AGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALP  354 (546)
Q Consensus       281 ~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL---~--~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~  354 (546)
                      .+...++.|+.+|..++.......    ...++.++.+|   .  ..++.++..++.+|..++..- .+...  -..+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence            566788889999998876522111    13344444443   2  237899999999999887531 11111  123566


Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHHhCc----hHHHHHHHHHHHhhCC--cccHHH
Q 009036          355 PLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKL--GSVNALLGMVNSG----HMTGRVLLILGNLASC--SDGRVA  426 (546)
Q Consensus       355 ~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~--Gav~~Lv~lL~~~----~~~e~al~~L~nLa~~--~e~r~~  426 (546)
                      .|+..| +  +.++..|+.+|.+|+..  .+..+.-.  ..+..|..++..+    ..+..++.++..++..  ++....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 2  67889999999999853  33334322  5666677777652    2666777777777643  233333


Q ss_pred             HHhCCcHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHhc-----CC------------hhhHHHHHHCCcHHHHHHHH
Q 009036          427 VLDSGGVECLVGML----RKGTELSESTQESCVSVLYALSH-----GG------------LRFKGLAAAAGMAEVLMRME  485 (546)
Q Consensus       427 i~~~g~i~~Lv~lL----~~~~~~s~~~~e~Av~~L~~L~~-----~~------------~~~~~~~~~~g~v~~L~~ll  485 (546)
                      ..+ ..++.++..+    .... .+++.+...+..|..|+.     ..            ......+  ..+++.+..++
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~-~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l  700 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADS-KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIA  700 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHH
Confidence            222 2334444333    2210 033344444445544432     11            0111122  23667777776


Q ss_pred             hc--CCHHHHHHHHHHHHHhhc
Q 009036          486 RV--GSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       486 ~~--~s~~~k~~A~~lL~~L~~  505 (546)
                      ..  .++.+.+.+..+++.+..
T Consensus       701 ~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          701 EMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHH
Confidence            54  367899999999988764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=92.14  E-value=10  Score=37.64  Aligned_cols=193  Identities=13%  Similarity=0.067  Sum_probs=136.7

Q ss_pred             hhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC-ch----HHHHHhcCChHHHHHHHccC--CHHHHHHHHHHHhhc
Q 009036          265 LCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK-IN----KMLIVRSGLVPPIVDVLMAG--SAEAQEHACGAIFSL  337 (546)
Q Consensus       265 l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~-~n----k~~i~~~g~l~~Lv~lL~~~--~~~~~~~Aa~~L~~L  337 (546)
                      +...+++..|+..|..=+-+.+..+..+..++.... .+    ...+..  - +-++..|-.|  ++++-..+-..|...
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            344688999999998889999999999988887642 22    222332  2 3333333333  556666666777777


Q ss_pred             ccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-chhHHHHHhc---CcHHHHHHHHhCch--HHHHHH
Q 009036          338 ALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-KSNRTKLVKL---GSVNALLGMVNSGH--MTGRVL  411 (546)
Q Consensus       338 s~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~---Gav~~Lv~lL~~~~--~~e~al  411 (546)
                      ..++.....|...+.+..+++.+..++=++-..|..++..|-.. .......+..   -.+...-.+|.+++  ++.+++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            77776666677777888999999988888888999888887553 3333344443   34555667777776  788999


Q ss_pred             HHHHHhhCCcccHHHHHh----CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          412 LILGNLASCSDGRVAVLD----SGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       412 ~~L~nLa~~~e~r~~i~~----~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ..|..|-....+...+..    ..-+..++.+|++   .+..++-.|..+.--...
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d---~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD---KSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC---chhchhhhhhhheeeeee
Confidence            999999988877666543    3467888888988   568899999887755544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.69  E-value=4.1  Score=41.51  Aligned_cols=171  Identities=17%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             HHHHHhcCCCCHHH-HHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009036          230 DYFVQKLKSPQVHE-VEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNL  296 (546)
Q Consensus       230 ~~lv~~L~s~~~~~-~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nL  296 (546)
                      +..|.+|++..... -.+.+..|+...+.++ .....+. .+++..|+..|..           .+...+..++.+|..|
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            45567776553222 2234555655444443 3333443 5788888887752           1456778888889888


Q ss_pred             hcCCchHHHHHh-cCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--h-hhHH----------hhcCChHHHHHhhcc
Q 009036          297 SLEKINKMLIVR-SGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--N-KTAI----------GVLGALPPLLHLLKS  362 (546)
Q Consensus       297 s~~~~nk~~i~~-~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~l~~Lv~lL~~  362 (546)
                      .....+...+.. ..++..|+..|.+..+.++..++.+|..++..++  + ...+          .+..-+..|+..|..
T Consensus        86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            776666665554 4678999999988899999999988888776543  2 2222          223466778888874


Q ss_pred             -CCHHHHHHHHHHHHHhhcCch-------hHHHHHhcCcHHHHHHHH
Q 009036          363 -DSERTQHDSALALYHLSLVKS-------NRTKLVKLGSVNALLGMV  401 (546)
Q Consensus       363 -~~~~~~~~A~~aL~~Ls~~~~-------n~~~iv~~Gav~~Lv~lL  401 (546)
                       .+.+.+..++..+-.|....+       .|..+...|..+.|-.+-
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr  212 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR  212 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence             466665555544444444332       366777777777765543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.29  E-value=11  Score=43.46  Aligned_cols=219  Identities=12%  Similarity=0.057  Sum_probs=134.6

Q ss_pred             CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--
Q 009036          223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE--  299 (546)
Q Consensus       223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~--  299 (546)
                      +++-+.++.++..+-+++.+.|.+|-..|..+-+..          ++...+..+|. +.++.++.-|+..|.+....  
T Consensus        12 ~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W   81 (1023)
T 4hat_C           12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKW   81 (1023)
T ss_dssp             CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCc----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            456778888898886666667888888887665543          44444555554 46889999999888876542  


Q ss_pred             ----CchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHH
Q 009036          300 ----KINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQH  369 (546)
Q Consensus       300 ----~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~  369 (546)
                          ++.+..| +...+..+...-..+     ..-++...+.+|..++..+-.    .. ...++.|+.++..+ +....
T Consensus        82 ~~L~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~~-~~~~~  155 (1023)
T 4hat_C           82 KLLPNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSSS-VNVCE  155 (1023)
T ss_dssp             GGSCHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTTC-HHHHH
T ss_pred             hcCCHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcCC-HHHHH
Confidence                2333333 333455554432221     244555566666666543211    11 46778888888653 44556


Q ss_pred             HHHHHHHHhhcC---------chh-----HHHHHhc--CcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhC
Q 009036          370 DSALALYHLSLV---------KSN-----RTKLVKL--GSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDS  430 (546)
Q Consensus       370 ~A~~aL~~Ls~~---------~~n-----~~~iv~~--Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~  430 (546)
                      ..+.+|..|+..         ...     +..|...  .++..+..+|..   ..+...++.+|......-. -..+.+.
T Consensus       156 ~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~  234 (1023)
T 4hat_C          156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYET  234 (1023)
T ss_dssp             HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred             HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcch
Confidence            666777665431         111     1222222  233344444432   3477788899888877543 3456678


Q ss_pred             CcHHHHH-HHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          431 GGVECLV-GMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       431 g~i~~Lv-~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      +.++.+. ..|..     +..++.|+.+|..+..
T Consensus       235 ~ll~~l~~~~L~~-----~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          235 NILELLSTKFMTS-----PDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             SHHHHHHTHHHHS-----HHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCC-----HHHHHHHHHHHHHHHc
Confidence            8999999 77765     7889999999999876

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=88.26  E-value=4.9  Score=45.79  Aligned_cols=153  Identities=10%  Similarity=0.072  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHH---ccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCCh
Q 009036          237 KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLI---ISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLV  312 (546)
Q Consensus       237 ~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL---~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l  312 (546)
                      .+.+|..++.++..|..++......     +...++.++..+   ..+++.++..++.+|..++.. ..+. ... ..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence            5668999999999999988754321     123455555544   235788999999999988753 2222 222 3588


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh--hcCChHHHHHhhccC--CHHHHHHHHHHHHHhhcCc--hhHH
Q 009036          313 PPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG--VLGALPPLLHLLKSD--SERTQHDSALALYHLSLVK--SNRT  386 (546)
Q Consensus       313 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~--~n~~  386 (546)
                      +.|+..|++  +.++..|+.+|..++...  +..+.  -...+..|..++...  +.+.+..+..++..+...-  +.+.
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            888888865  789999999999998532  22221  123444555666542  5677788888888876532  3333


Q ss_pred             HHHhcCcHHHHHHHH
Q 009036          387 KLVKLGSVNALLGMV  401 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL  401 (546)
                      ..++ ..++.+...+
T Consensus       608 ~~~~-~l~~~l~~~l  621 (963)
T 2x19_B          608 KNLH-SLISPYIQQL  621 (963)
T ss_dssp             HHHH-HHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHH
Confidence            3332 2455555444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=87.90  E-value=6.8  Score=40.76  Aligned_cols=99  Identities=13%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..+..++..-+ ++..++.-|+..|..+.+.-+....     .+|..++.++...|..++..|+..|-.++.+ ++-.+ 
T Consensus        29 ~~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-  100 (507)
T 3u0r_A           29 DAYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-  100 (507)
T ss_dssp             HHHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-
T ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-
Confidence            45667777654 5688888889999998888766543     3688999999999999999999999999988 55444 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhc
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSL  337 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~L  337 (546)
                          +...|+++|+..++.-....-.+|..|
T Consensus       101 ----iaDvL~QlLqtdd~~E~~~V~~sL~sl  127 (507)
T 3u0r_A          101 ----VADILTQLLQTDDSAEFNLVNNALLSI  127 (507)
T ss_dssp             ----HHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhccchHHHHHHHHHHHHH
Confidence                456788999988765555555555544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=87.78  E-value=12  Score=42.89  Aligned_cols=218  Identities=11%  Similarity=0.031  Sum_probs=124.8

Q ss_pred             CchhHHHHH-HhcC-CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC---CHHHHHHHHHHHHHhhc-
Q 009036          225 SNEQEDYFV-QKLK-SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR---YTNVQVNAVAALVNLSL-  298 (546)
Q Consensus       225 ~~~~i~~lv-~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~---~~~v~~~A~~~L~nLs~-  298 (546)
                      +-..+...+ ..+. +.+.+.|.+|-..|..+-+..          ++......+|...   +..++.-|+.+|.+... 
T Consensus         4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~   73 (980)
T 3ibv_A            4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE   73 (980)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence            334455555 3443 337888999988887766543          4556666677543   78999888888876543 


Q ss_pred             -CCc----hHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCH-HHHHH
Q 009036          299 -EKI----NKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSE-RTQHD  370 (546)
Q Consensus       299 -~~~----nk~~i~~~g~l~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~-~~~~~  370 (546)
                       .++    .+..|.+ ..+..+...-. .....++...+.+|..+....-.    .. .+.++.|+.++..++. .....
T Consensus        74 l~~e~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~  148 (980)
T 3ibv_A           74 WNNESNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNF  148 (980)
T ss_dssp             CCTTTSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHH
T ss_pred             CChhhhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHH
Confidence             334    4444332 23443333100 23567888888888877543210    01 4577777877766433 33344


Q ss_pred             HHHHHHHhhcC----c-----h--h-----HHHHHhc---CcHHHHHHHHh------CchHHHHHHHHHHHhhCCcccHH
Q 009036          371 SALALYHLSLV----K-----S--N-----RTKLVKL---GSVNALLGMVN------SGHMTGRVLLILGNLASCSDGRV  425 (546)
Q Consensus       371 A~~aL~~Ls~~----~-----~--n-----~~~iv~~---Gav~~Lv~lL~------~~~~~e~al~~L~nLa~~~e~r~  425 (546)
                      .+.+|..|+..    .     +  .     +..|.+.   -+++....+|.      +..+...++.+|........ -.
T Consensus       149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~  227 (980)
T 3ibv_A          149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-IN  227 (980)
T ss_dssp             HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HH
T ss_pred             HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HH
Confidence            45555533321    0     0  1     2222211   01333333332      23367788888888776433 34


Q ss_pred             HHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          426 AVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       426 ~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      .+++.+.++.+.+.|..     +..++.|+.+|..+..
T Consensus       228 ~i~~~~ll~~l~~~L~~-----~~~r~~A~ecL~ei~~  260 (980)
T 3ibv_A          228 LIVNEPCMNLLYSFLQI-----EELRCAACETMTEIVN  260 (980)
T ss_dssp             HHHCHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHcCC-----hHHHHHHHHHHHHHHH
Confidence            55566777888877765     6888999999888876

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.48  E-value=9.5  Score=43.35  Aligned_cols=136  Identities=13%  Similarity=0.036  Sum_probs=86.3

Q ss_pred             cCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh---ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 009036          321 AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL---KSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNAL  397 (546)
Q Consensus       321 ~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL---~~~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~L  397 (546)
                      ..+...++.++.+|..++..-...    ....++.++..|   ..+++.++..++++|..++.+-........ .+++.|
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l  534 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLV  534 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence            346677888888888876542110    012344444443   235788999999999988764222223332 688899


Q ss_pred             HHHHhCchHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          398 LGMVNSGHMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       398 v~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      +..|.++.++..|+.+|.+||..  .+..+..  ...+..|..++.... .+...++.++.++..+...
T Consensus       535 ~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~-~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          535 LHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQI-HKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCC-CChHHHHHHHHHHHHHHhc
Confidence            99888877999999999999942  2222331  124445555565432 2467888888888888753

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=87.15  E-value=12  Score=43.36  Aligned_cols=218  Identities=12%  Similarity=0.044  Sum_probs=126.7

Q ss_pred             CchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC----
Q 009036          225 SNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE----  299 (546)
Q Consensus       225 ~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~----  299 (546)
                      +-..+..++..+-+++...|.+|-..|..+-+..          +++..+..+|. +.+..++..|+..|.+....    
T Consensus        14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~   83 (1049)
T 3m1i_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL   83 (1049)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence            3456677777666677777888888887765432          45555666664 46889999999999886532    


Q ss_pred             --CchHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccCCHHHHHHH
Q 009036          300 --KINKMLIVRSGLVPPIVDVLMAG-----SAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSDSERTQHDS  371 (546)
Q Consensus       300 --~~nk~~i~~~g~l~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~~~~~A  371 (546)
                        ++.+..|. ...+..+...-...     +..++...+.++..++..+-.    .. .+.++.|+..+. .+...+..+
T Consensus        84 l~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~  157 (1049)
T 3m1i_C           84 LPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENN  157 (1049)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHH
Confidence              23343333 22333333322111     356777777777777654211    11 467888888886 455566777


Q ss_pred             HHHHHHhhcC-----c----hhH-----HHHHhc--CcHHHHHHHHhC---chHHHHHHHHHHHhhCCcccHHHHHhCCc
Q 009036          372 ALALYHLSLV-----K----SNR-----TKLVKL--GSVNALLGMVNS---GHMTGRVLLILGNLASCSDGRVAVLDSGG  432 (546)
Q Consensus       372 ~~aL~~Ls~~-----~----~n~-----~~iv~~--Gav~~Lv~lL~~---~~~~e~al~~L~nLa~~~e~r~~i~~~g~  432 (546)
                      +.+|..|+..     .    ..+     ..+...  .++..+..++.+   ..+...++.++.+....-.. ..+.+...
T Consensus       158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~l  236 (1049)
T 3m1i_C          158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNI  236 (1049)
T ss_dssp             HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhH
Confidence            7777777631     0    011     222221  223333444432   23778888888877654332 22445566


Q ss_pred             HHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          433 VECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       433 i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ++.+.+.+..    ++..++.|+.+|..+..
T Consensus       237 l~~l~~~~l~----~~~~~~~a~~~L~~i~~  263 (1049)
T 3m1i_C          237 LELLSTKFMT----SPDTRAITLKCLTEVSN  263 (1049)
T ss_dssp             HHHHHTHHHH----SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC----CHhHHHHHHHHHHHHHh
Confidence            6666633322    26777778887777765

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=86.04  E-value=4.5  Score=46.78  Aligned_cols=140  Identities=8%  Similarity=0.043  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCCchHHHHHhcCChH
Q 009036          239 PQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-----RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVP  313 (546)
Q Consensus       239 ~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-----~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~  313 (546)
                      .+|..++.++.+++.++..-......-.=..+++.|+.++..     +...++..++.+|+..+.--.....+. ...+.
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~  543 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL  543 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence            579999999999999987643321211113567778887753     223344566677776554111111111 12455


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh------cCChHHHHHhhc----cCCHHHHHHHHHHHHHhhcC
Q 009036          314 PIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV------LGALPPLLHLLK----SDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       314 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~------~g~l~~Lv~lL~----~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      .|+..|...++.++..|+.++.+|+..  .+..+..      ...++.++..+.    .-+.+.+..+..++..+...
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            555666666789999999999999864  2222321      123444444332    23555556677777777653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=85.35  E-value=16  Score=42.38  Aligned_cols=218  Identities=11%  Similarity=0.058  Sum_probs=132.9

Q ss_pred             CCCchhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhhcC--
Q 009036          223 PNSNEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLSLE--  299 (546)
Q Consensus       223 ~~~~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs~~--  299 (546)
                      +++-..++.++..+-+++.+.|.+|-..|..+-+.          +++...+..+|. +.++.++.-|+.+|.+....  
T Consensus        24 ~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W   93 (1073)
T 3gjx_A           24 KLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW   93 (1073)
T ss_dssp             CCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred             CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            34567889999988778888888888888665443          244555555554 45889999999998876542  


Q ss_pred             ----CchHHHHHhcCChHHHHHHHcc-----CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHH
Q 009036          300 ----KINKMLIVRSGLVPPIVDVLMA-----GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHD  370 (546)
Q Consensus       300 ----~~nk~~i~~~g~l~~Lv~lL~~-----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~  370 (546)
                          ++.+..| +...+..+...-..     .++.++...+.+|..++..+-..   .=...++.|+.++.. ++.....
T Consensus        94 ~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~  168 (1073)
T 3gjx_A           94 KILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQN  168 (1073)
T ss_dssp             GGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHH
T ss_pred             hhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHH
Confidence                2333333 33345555444322     24566666677777665432110   014567777777754 4455566


Q ss_pred             HHHHHHHhhcC--c-------hh-----HHHHHhcCcHHHHHHH----HhC---chHHHHHHHHHHHhhCCcccHHHHHh
Q 009036          371 SALALYHLSLV--K-------SN-----RTKLVKLGSVNALLGM----VNS---GHMTGRVLLILGNLASCSDGRVAVLD  429 (546)
Q Consensus       371 A~~aL~~Ls~~--~-------~n-----~~~iv~~Gav~~Lv~l----L~~---~~~~e~al~~L~nLa~~~e~r~~i~~  429 (546)
                      .+.+|..|+..  .       ..     +..|.+.  ++.++.+    |..   ..+...++.+|..+.+.-+ -..+++
T Consensus       169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~  245 (1073)
T 3gjx_A          169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFE  245 (1073)
T ss_dssp             HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred             HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhcc
Confidence            77777777542  1       01     2223322  4444444    332   2366778899998887654 345677


Q ss_pred             CCcHHHHH-HHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          430 SGGVECLV-GMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       430 ~g~i~~Lv-~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      .+.+..|+ ..|..     +..++.|+.+|..+..
T Consensus       246 ~~ll~~L~~~~L~~-----~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          246 TKLISTLIYKFLNV-----PMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             SSHHHHHHHHTSSS-----HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCC-----hHHHHHHHHHHHHHHh
Confidence            88888774 55543     7889999999998876

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=84.67  E-value=0.88  Score=43.23  Aligned_cols=47  Identities=11%  Similarity=0.035  Sum_probs=36.0

Q ss_pred             ceeCcccccccCCCeec-CCCccccHHHHHHHHhcC-CCCCCCCCCCCC
Q 009036           45 EFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLG-FTPTLVDGTTPD   91 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~   91 (546)
                      -..|.||.++..-=+.= .|++.|-+.|+.+|++.. ...||.|+...+
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            34599999987743332 389999999999999763 458999987644

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.39  E-value=3.6  Score=36.48  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|++.++.+|..|+..|-.+.+.+ ......+....++.-|+.++.. .++.+++.++..|...+.
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999984 4566778888899999998875 678999999888876654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=82.71  E-value=12  Score=43.09  Aligned_cols=188  Identities=11%  Similarity=0.024  Sum_probs=107.8

Q ss_pred             hhHHHHHHhcCCC---CHHHHHHHHHHHHHHhcc-Chh----hhHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhh
Q 009036          227 EQEDYFVQKLKSP---QVHEVEEALISLRKLTRS-REE----TRVSLCTPRLLLALRSLII-SRYTNVQVNAVAALVNLS  297 (546)
Q Consensus       227 ~~i~~lv~~L~s~---~~~~~~~Al~~L~~La~~-~~~----~r~~l~~~g~i~~Lv~lL~-s~~~~v~~~A~~~L~nLs  297 (546)
                      ++.......|..+   +.++|.-|+..|.+..+. +++    .+.. ....++..+...-. .....++...+.+|..+.
T Consensus        40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~-lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~  118 (980)
T 3ibv_A           40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM-IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLF  118 (980)
T ss_dssp             THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH-HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence            3455555666443   688899999999876652 112    2222 22223333333110 234567777888887776


Q ss_pred             cCCchHHHHHhcCChHHHHHHHccCCH-HHHHHHHHHHhhcccc----c------------chhhHHhhc---CChHHHH
Q 009036          298 LEKINKMLIVRSGLVPPIVDVLMAGSA-EAQEHACGAIFSLALD----D------------QNKTAIGVL---GALPPLL  357 (546)
Q Consensus       298 ~~~~nk~~i~~~g~l~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~----~------------~~k~~i~~~---g~l~~Lv  357 (546)
                      ...-...   =.+.++-|+.++..++. .......++|..+...    .            +.|..+...   ..++.++
T Consensus       119 ~~~~p~~---Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~  195 (980)
T 3ibv_A          119 LQLYPSN---WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVY  195 (980)
T ss_dssp             HHHTTTT---CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHhCccc---CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHH
Confidence            5311000   02467777777776543 3444555566533221    0            002333221   1134444


Q ss_pred             Hhhcc----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhC
Q 009036          358 HLLKS----DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLAS  419 (546)
Q Consensus       358 ~lL~~----~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~  419 (546)
                      .+|..    .++.++..++.+|.....+-+ -..++....++.+..+|.++.+++.|+.+|..+..
T Consensus       196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~  260 (980)
T 3ibv_A          196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVN  260 (980)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            44433    677888888888888776533 34455668899999999888889999998888874

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=82.70  E-value=17  Score=34.22  Aligned_cols=136  Identities=16%  Similarity=0.037  Sum_probs=89.8

Q ss_pred             hhHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhc--CCch
Q 009036          227 EQEDYFVQKL-KSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSL--EKIN  302 (546)
Q Consensus       227 ~~i~~lv~~L-~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~--~~~n  302 (546)
                      +.+..+...| ++...++|.-|+..|..+ .         .....++.+.. +-...+-.|++.+..++..++.  +++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            4444555556 555678888888877665 2         11245677776 5556788999999999988764  232 


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcC-ChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLG-ALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g-~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                             ..++.+...+.+.+..+|..|...+.--+.....+   .+.. +++.|-.+..+.+.-+++..++.|..++..
T Consensus       139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence                   15677888899999999999888775422211111   1111 334444445556788999999999999985


Q ss_pred             ch
Q 009036          382 KS  383 (546)
Q Consensus       382 ~~  383 (546)
                      ++
T Consensus       209 ~P  210 (240)
T 3l9t_A          209 FP  210 (240)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.33  E-value=3.9  Score=35.62  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|++.++.+|..|+..|-.+.+.+ ......+.+..++.-|+.++..      .+..+++.++..|...+.
T Consensus        37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999984 4567788888999999998863      478999999988887664

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=82.22  E-value=9.6  Score=37.22  Aligned_cols=148  Identities=9%  Similarity=0.056  Sum_probs=88.8

Q ss_pred             chhHHHHHHhcCCC------CHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSP------QVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~------~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~  298 (546)
                      ...+..+...|+++      +.+.-..|+..|..++.+-...-+.+. +...+..|+ +....++.+++.|..+|.....
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            45566666777666      556678899999999986544444443 444454444 3345677899999999987666


Q ss_pred             C-CchHHHHHhc--CChHHHHHHHcc-------CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC--CHH
Q 009036          299 E-KINKMLIVRS--GLVPPIVDVLMA-------GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD--SER  366 (546)
Q Consensus       299 ~-~~nk~~i~~~--g~l~~Lv~lL~~-------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~--~~~  366 (546)
                      + |.....|.+.  ..+..++.-|..       ...-++..-+.+|..|..+...   + ...++..|.+++...  ++.
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHH
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHH
Confidence            4 5555555432  445555544432       2334445556666666665421   1 133556666666555  677


Q ss_pred             HHHHHHHHHHHh
Q 009036          367 TQHDSALALYHL  378 (546)
Q Consensus       367 ~~~~A~~aL~~L  378 (546)
                      ++..++..+..+
T Consensus       176 ~k~Kvl~li~d~  187 (315)
T 3qml_C          176 LQIKVLELISKI  187 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777776665554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=82.01  E-value=24  Score=35.67  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC--ch-HHHHH---------
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK--IN-KMLIV---------  307 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~--~n-k~~i~---------  307 (546)
                      +.+.+...+++|+.+..........+.....|..|...|.+.++.++..|+.+|..++..+  ++ ...+.         
T Consensus       133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~  212 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  212 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence            4577888999999998765444555556889999999999999999999999998888753  33 33332         


Q ss_pred             -hcCChHHHHHHHcc-CCHHHHHHHHHHHhhccccc---chhhHHhh---cCChHHHHHhhcc-CCHH
Q 009036          308 -RSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDD---QNKTAIGV---LGALPPLLHLLKS-DSER  366 (546)
Q Consensus       308 -~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~---~g~l~~Lv~lL~~-~~~~  366 (546)
                       +..-+..++..|.+ .+.+.+..+..++..+....   +.+..+..   .-++..++.-|+. +++.
T Consensus       213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~  280 (383)
T 3eg5_B          213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED  280 (383)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred             CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence             23457888898887 47888888877777766543   23444432   3455556665665 3443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=81.39  E-value=18  Score=33.86  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCc--h-HHHHH---------
Q 009036          240 QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKI--N-KMLIV---------  307 (546)
Q Consensus       240 ~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~--n-k~~i~---------  307 (546)
                      +.+.+..++.+|+.+..........+.....+..|...|.++++.++..++.+|..++..+.  + ...+.         
T Consensus        67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~  146 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  146 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence            34667888999999887654455555668899999999999999999999999988887543  4 33332         


Q ss_pred             -hcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccc---hhhHHhh---cCChHHHHHhhcc-CCHHH
Q 009036          308 -RSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQ---NKTAIGV---LGALPPLLHLLKS-DSERT  367 (546)
Q Consensus       308 -~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~---~k~~i~~---~g~l~~Lv~lL~~-~~~~~  367 (546)
                       +..-+..+++.|++ .+.+.+..++..+..+....+   .|..+..   .-++..++.-|+. +++++
T Consensus       147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L  215 (233)
T 2f31_A          147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  215 (233)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred             CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence             22467778888874 467888777777776655442   2444432   3466666666654 44443

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.35  E-value=4.3  Score=34.99  Aligned_cols=73  Identities=11%  Similarity=0.114  Sum_probs=61.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|++.++.+|..|+..|..+.+.+. .....+.+..++.-|+.++...++.++..++..+...+.
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999988754 456677778889999998887889999999988887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=81.11  E-value=1  Score=47.89  Aligned_cols=138  Identities=12%  Similarity=0.030  Sum_probs=91.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      ..+..++..+....|+++-.++-.|+.+ +      ..+. =.++++.++..|.+.|.+++..|+.+|.-++ .++... 
T Consensus       263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~------DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~-  333 (800)
T 3oc3_A          263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-K------EFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD-  333 (800)
T ss_dssp             CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G------GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH-
T ss_pred             HHHHHHHhhcCCCCeeehhhhHHHHHHH-H------HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHH-
Confidence            4556666666888999999999999988 1      1111 2567888888899999999999999999887 222211 


Q ss_pred             HHhcCChHHHHHHHccCC--HHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhh
Q 009036          306 IVRSGLVPPIVDVLMAGS--AEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLS  379 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls  379 (546)
                          .++..+.+.|.+-+  .......+.+|..|...+..  .-.....+|.|..+|++.-..+|..++.+|..+.
T Consensus       334 ----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          334 ----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             ----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             ----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence                23444455555321  11222334445554443321  1112478899999999999999999999988876

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.42  E-value=4.2  Score=36.39  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|++.++.+|..|+..|-.+.+.+. .....+.+..++.-|+.++..      .+..+++.++..|...+.
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999999854 567788888999999999862      468999999998887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	546
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-10
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	4e-11
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	6e-10
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	8e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.004

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (210), Expect = 3e-18
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 246 EALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML 305
             L+ L  L R+ ++T+               +  R   +      AL  L+ +  N+++
Sbjct: 400 PRLVQL--LVRAHQDTQRRTSMGGTQQQFVEGV--RMEEIVEGCTGALHILARDVHNRIV 455

Query: 306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSE 365
           I     +P  V +L +     Q  A G +  LA D +   AI   GA  PL  LL S +E
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 515

Query: 366 RTQHDSALALYHLS 379
                +A  L+ +S
Sbjct: 516 GVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (198), Expect = 8e-17
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 2/140 (1%)

Query: 281 RYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD 340
                +  A+  LV L +          S        V      E  E   GA+  LA D
Sbjct: 390 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 449

Query: 341 DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGM 400
             N+  I  L  +P  + LL S  E  Q  +A  L  L+  K     +   G+   L  +
Sbjct: 450 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509

Query: 401 VNSGHMTGR--VLLILGNLA 418
           ++S +         +L  ++
Sbjct: 510 LHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 7e-13
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 247 ALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI 306
           A+++L       E         R +  L  L+      V   A   +  LS ++ ++  I
Sbjct: 1   AVVNLINYQDDAELAT------RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 54

Query: 307 VRS-GLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDS 364
           +RS  +V  IV  +      E      G + +L+   +   AI   G +P L+ +L S  
Sbjct: 55  MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 114

Query: 365 ERTQHDSALALYH 377
           +     +   L++
Sbjct: 115 DSVLFYAITTLHN 127

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 32/164 (19%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVK-LGSVNALLGMV-NSGHMT 407
             A+P L  LL  + +   + +A+ ++ LS  +++R  +++    V+A++  + N+  + 
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 408 GR--VLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG 465
                   L NL+   +G +A+  SGG+  LV ML       +S     ++ L+ L    
Sbjct: 76  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQ 132

Query: 466 LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAEE 509
              K     AG  + ++ +    +          L+++    +E
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 40/201 (19%), Positives = 65/201 (32%), Gaps = 22/201 (10%)

Query: 304 MLIVRSGLVPPIVDVL-MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS 362
             +     +P +V +L         +   G I +LAL   N   +   GA+P L+ LL  
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 363 DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSD 422
             + TQ  +++       V+  R + +  G   A                 L  LA    
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA-----------------LHILARDVH 451

Query: 423 GRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLM 482
            R+ +     +   V +L       E+ Q     VL  L+           A G    L 
Sbjct: 452 NRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDK-EAAEAIEAEGATAPLT 507

Query: 483 RMERVGSEHVKEKAKRMLELM 503
            +    +E V   A  +L  M
Sbjct: 508 ELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 244 VEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINK 303
           VE    +L  L R     R+ +     +     L+ S   N+Q  A   L  L+ +K   
Sbjct: 436 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLA 338
             I   G   P+ ++L + +     +A   +F ++
Sbjct: 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.1 bits (158), Expect = 5e-14
 Identities = 27/71 (38%), Positives = 34/71 (47%)

Query: 41  EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLA 100
           E P  F CP+S  LM DPV+VS+G T+ER+        G         T   + + PN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63

Query: 101 LKSTILNWCHK 111
           LKS I  WC  
Sbjct: 64  LKSLIALWCES 74

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 31/209 (14%), Positives = 72/209 (34%), Gaps = 17/209 (8%)

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLAL-DDQNKTAIGVLGALPPLLHLLKSDSERTQHD 370
           +P  V  L +   + Q      I      D+  K  +  LG +  L+ LL+S ++  Q  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 371 SALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGH---MTGRVLLILGNLASCSDGRVA 426
           +A AL +L    + N+ +  +   +   + ++       +  ++  +L NL+S  + +  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 427 VLDSGGVECLVGMLRKGTEL------------SESTQESCVSVLYALSHGGLRFKGLAAA 474
           ++          ++   +                    +    L  LS      + +   
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 475 AGMAEVLMRMERVGSEHVKEKAKRMLELM 503
           +G+ + LM   +      +   K +   M
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCM 212

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 249 ISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVR 308
           ++  K   S   +++     + L  +  L+ S  ++V  +  + L N+S   +   ++  
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN 370

Query: 309 SGLVPPIVDVLMAG------SAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLK 361
               P +  +L +       S +    AC  + +L     Q          L  +++L +
Sbjct: 371 QV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429

Query: 362 S-DSERTQHDSALALYHL 378
           S  S +    + L L  +
Sbjct: 430 SSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 2/150 (1%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            VQ L S            ++      E  +  +     +  L  L+ S   NVQ  A  
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 292 ALVNLSLE-KINKMLIVRSGLVPPIVDVLM-AGSAEAQEHACGAIFSLALDDQNKTAIGV 349
           AL NL      NK+   R   +   V +L   G+AE Q+   G +++L+  D+ K  +  
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126

Query: 350 LGALPPLLHLLKSDSERTQHDSALALYHLS 379
                    ++   S     +S ++   + 
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVD 156

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (137), Expect = 4e-11
 Identities = 17/71 (23%), Positives = 28/71 (39%)

Query: 41  EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLA 100
           + P      +S  LM +P +  SG T++R               V  +      +IPNLA
Sbjct: 3   DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 101 LKSTILNWCHK 111
           +K  I  +  +
Sbjct: 63  MKEVIDAFISE 73

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 25  SSISTKAHQLQKPQTAEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPT 83
           SS S+   Q ++   A+   EFL P+  +LM DPVV+ S   T +R+          T  
Sbjct: 2   SSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61

Query: 84  LVDGTTPDFSTVIPNLALKSTILNWCHKQS 113
             + +      + PN  LK  I  W  ++ 
Sbjct: 62  -FNRSPLTMDQIRPNTELKEKIQRWLAERK 90

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 4/157 (2%)

Query: 221 NHPNSNEQEDYFVQKLKSPQVHEVEEALISLRK-LTRSREETRVSLCTPRLLLALRSLII 279
           N    N   +  V+ + S  +    +A  + RK L+R ++    ++    L+    S + 
Sbjct: 7   NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 280 -SRYTNVQVNAVAALVNL-SLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSL 337
            +  + +Q  +  AL N+ S        +V  G +P  + +L +  A   E A  A+ ++
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

Query: 338 ALD-DQNKTAIGVLGALPPLLHLLKSDSERTQHDSAL 373
           A D    +  +   GA+ PLL LL      T     L
Sbjct: 127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 163

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 312 VPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL--GALPPLLHLLK-SDSERTQ 368
           V  IV  + + + E+Q  A  A   L   ++      ++  G +P  +  L  +D    Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 369 HDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGHM 406
            +SA AL +++   S     +V  G++ A + ++ S H 
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA 113

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 302 NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLAL--DDQNKTAIGVLGALPPLLHL 359
               +V  GLVP +V VL     + Q+ A  AI +       +    +   G + PL++L
Sbjct: 306 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 365

Query: 360 LKSDSERTQHDSALALYHL 378
           L +   +       A+ ++
Sbjct: 366 LSAKDTKIIQVILDAISNI 384

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 6/175 (3%)

Query: 232 FVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVA 291
            V+ L          AL ++  +    +     +    +L ALR L+ S   N++  A  
Sbjct: 293 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 352

Query: 292 ALVNL-SLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVL 350
            + N+ +        ++ + L+PP+V +L     + ++ AC AI + +     +  I   
Sbjct: 353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 412

Query: 351 ----GALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMV 401
               G + PL  LL+    R    +  AL ++ L      K  +  ++N     +
Sbjct: 413 LVSQGCIKPLCDLLEIADNRIIEVTLDALENI-LKMGEADKEARGLNINENADFI 466

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 29 TKAHQLQKPQTAEPPGEF-LCPVSGSLMADPVVVSSGHTFERAC 71
           K  Q Q     E    F LC +      D  +   GH    +C
Sbjct: 6  IKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSC 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	546
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.85
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.85
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.72
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.71
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.55
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.53
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.49
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.47
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.12
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.05
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.89
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.78
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.67
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.6
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.5
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.5
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.4
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.35
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.26
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.18
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.18
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.12
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.03
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.0
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.97
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.84
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.5
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.5
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.5
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.42
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.4
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.3
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.91
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.83
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.15
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	92.72
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.59
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	89.53
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	87.71
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	85.59
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	84.69
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	82.99

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=216.83  Aligned_cols=284  Identities=18%  Similarity=0.239  Sum_probs=243.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      ..+++.|++.|++.+..++..|+..|..+++.+...+..+...|+++.|+.+|.. ++.++++.|+.+|.+|+.+++++.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            4679999999999999999999999999998654444444456889999999975 678999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC-c
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV-K  382 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~-~  382 (546)
                      .+++.|+++.|+.+|++++++++.+|+.+|.+|+.+.+ .+..+.+.|+++.|+.+|++++++++..++.+|.+|+.. .
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999998765 567777899999999999999999999999999999974 5


Q ss_pred             hhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC---------------
Q 009036          383 SNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT---------------  444 (546)
Q Consensus       383 ~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~---------------  444 (546)
                      +++..++..|+++.|+.++...   .+...++.+|.+|+.+++++..+++.|+++.|+.++....               
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence            5678888889999999999753   3788899999999999999888888887777766654311               


Q ss_pred             ---------------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHh--cCCHHHHHHHHHHHH
Q 009036          445 ---------------------ELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMER--VGSEHVKEKAKRMLE  501 (546)
Q Consensus       445 ---------------------~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~--~~s~~~k~~A~~lL~  501 (546)
                                           ..+...++.|+.+|++|+.++...+..+.+.|+++.|+.++.  ++.+.+++.|..+|+
T Consensus       256 ~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~  335 (529)
T d1jdha_         256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  335 (529)
T ss_dssp             TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhh
Confidence                                 035677888899999999888888888889999999998764  457889999999999


Q ss_pred             HhhcCCcc
Q 009036          502 LMKGRAEE  509 (546)
Q Consensus       502 ~L~~~~~~  509 (546)
                      .|+.....
T Consensus       336 ~l~~~~~~  343 (529)
T d1jdha_         336 HLTSRHQE  343 (529)
T ss_dssp             HHTSSSTT
T ss_pred             cccchhhc
Confidence            99866544

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=3.6e-24  Score=169.50  Aligned_cols=74  Identities=36%  Similarity=0.588  Sum_probs=71.0

Q ss_pred             CCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036           41 EPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      ++|++|.||||+++|+|||+++|||+|||.||++|++.+...||.|+.++...+++||++|+++|++|+++|++
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            68999999999999999999999999999999999998878899999999988999999999999999999986

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.7e-21  Score=200.39  Aligned_cols=279  Identities=18%  Similarity=0.229  Sum_probs=234.9

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-hhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC-Cch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSRE-ETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLE-KIN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~-~~n  302 (546)
                      ..+++.+++.|++++++.|..|+..|+++..... .....+.+.|++|.|+.+|.+ +++++|..|+++|.+++.. ++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            4679999999999999999999999998865332 235678899999999999964 5788999999999999875 567


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHH------------------------
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLL------------------------  357 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv------------------------  357 (546)
                      +..+.+.|+++.|+.+|.+.+.++++.|+.+|.+++.++ +.+..+...|+++.|+                        
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            888899999999999999999999999999999998764 3455555555555444                        


Q ss_pred             -----------------------HhhccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHHhCch--HHHHHH
Q 009036          358 -----------------------HLLKSDSERTQHDSALALYHLSLVKS-NRTKLVKLGSVNALLGMVNSGH--MTGRVL  411 (546)
Q Consensus       358 -----------------------~lL~~~~~~~~~~A~~aL~~Ls~~~~-n~~~iv~~Gav~~Lv~lL~~~~--~~e~al  411 (546)
                                             .++.+++++++..++++|.+|+.... ....+...|+++.|++++.+++  ++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence                                   44444556778888999999988654 4555667799999999998765  888999


Q ss_pred             HHHHHhhCCc-ccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCH
Q 009036          412 LILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSE  490 (546)
Q Consensus       412 ~~L~nLa~~~-e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~  490 (546)
                      .+|.+|+... +.+..+++.|+++.|+.+|.+   .++.+++.|+.+|.+++.........+.+.|+++.|+.++.+++.
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~  328 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF  328 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhcc---cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccCh
Confidence            9999999754 567778899999999999987   468899999999999999888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 009036          491 HVKEKAKRMLELMKGRA  507 (546)
Q Consensus       491 ~~k~~A~~lL~~L~~~~  507 (546)
                      .++..|.++|..+....
T Consensus       329 ~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         329 KTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999998654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6e-24  Score=168.97  Aligned_cols=76  Identities=22%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             CCCCCceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009036           40 AEPPGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSLN  115 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~  115 (546)
                      .++|++|.||||+++|+|||+++|||||||.||.+|+..+...||.|++++...++.||..|+++|++|+.+||+.
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~   77 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV   77 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCc
Confidence            3689999999999999999999999999999999999888788999999999889999999999999999999974

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1e-20  Score=201.08  Aligned_cols=279  Identities=15%  Similarity=0.142  Sum_probs=246.7

Q ss_pred             chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036          226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      .+.++.|+..|+. .+.+.|..|++.|.+++..++.....+.+.|+++.|+.+|.+++.++++.|+++|.||+.+ +.++
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            4668899999974 4678999999999999998888888999999999999999999999999999999999985 6889


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch-hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN-KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK  382 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~  382 (546)
                      ..+.+.|+++.|+.++.+.+..++..++++|.+|+..... .......++++.|+.++.+.+.+++..++++|.+|+...
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999976543 334445689999999999999999999999999999855


Q ss_pred             h-hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCccc-HHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHH
Q 009036          383 S-NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDG-RVAVLDSGGVECLVGMLRKGTELSESTQESCVSVL  458 (546)
Q Consensus       383 ~-n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~-r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L  458 (546)
                      . ....+++.|+++.|+.++.+++  +...++.+|.||+...+. ...+.+.|+++.|..++.+   .++.++..++.+|
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~i~~~~~~~l  354 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTI  354 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC---CCHHHHHHHHHHH
Confidence            4 4677888899999999998755  788999999999976654 4455689999999999987   4688999999999


Q ss_pred             HHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          459 YALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       459 ~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .+++.++......+.+.|+++.|+.++.+++..++..|.++|..+....
T Consensus       355 ~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         355 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  403 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence            9999988888888889999999999999999999999999999998654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.1e-20  Score=192.26  Aligned_cols=301  Identities=18%  Similarity=0.193  Sum_probs=245.3

Q ss_pred             chhHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH
Q 009036          226 NEQEDYFVQKLKS-PQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk  303 (546)
                      .+.++.|++.|++ .++++|..|++.|.+++..++..+..+.+.|+++.|+.+|.+++.++++.|+.+|.|++.+ +..+
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            4678999999964 4678999999999999998888999999999999999999999999999999999999875 4455


Q ss_pred             HHHHhcCChHHH-----------------------------------------------HHHHccCCHHHHHHHHHHHhh
Q 009036          304 MLIVRSGLVPPI-----------------------------------------------VDVLMAGSAEAQEHACGAIFS  336 (546)
Q Consensus       304 ~~i~~~g~l~~L-----------------------------------------------v~lL~~~~~~~~~~Aa~~L~~  336 (546)
                      ..+.+.|+++.|                                               +.++.+.+++++..++.+|.+
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~  214 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  214 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence            555555554444                                               344455677788888899999


Q ss_pred             cccccc-hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHHhCch--HHHHHHH
Q 009036          337 LALDDQ-NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVK-SNRTKLVKLGSVNALLGMVNSGH--MTGRVLL  412 (546)
Q Consensus       337 Ls~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~  412 (546)
                      |+..+. ....+...|+++.|+.++.+++.+++..++.+|.+++... +.+..+++.|+++.|+.++.+.+  +++.++.
T Consensus       215 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~  294 (434)
T d1q1sc_         215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  294 (434)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred             cchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence            887654 4555667899999999999999999999999999998854 56788889999999999998754  8899999


Q ss_pred             HHHHhhCCc-ccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCH
Q 009036          413 ILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSE  490 (546)
Q Consensus       413 ~L~nLa~~~-e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~  490 (546)
                      +|.+|+... +.+..+.+.|+++.++.++..   .+.+.+..|+.+|.+++.. +.+....+.+.|+++.|+.++...++
T Consensus       295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCH
T ss_pred             HHhhhccccchhHHHHhhhhhHHHHHHHHhc---cChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            999999754 456667789999999999988   4689999999999999874 44556667788999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCccccccCCh-HHHHhcCCccccc
Q 009036          491 HVKEKAKRMLELMKGRAEEEEEGVDW-DELLDSGLVSRSR  529 (546)
Q Consensus       491 ~~k~~A~~lL~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~  529 (546)
                      +++..+..+|..|....+...+...+ ..+.+.|++....
T Consensus       372 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~  411 (434)
T d1q1sc_         372 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE  411 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHH
Confidence            99999999998887644332222222 3456777776653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.9e-20  Score=194.54  Aligned_cols=279  Identities=18%  Similarity=0.182  Sum_probs=242.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cChhhhHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCC-ch
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTR-SREETRVSLCTPRLLLALRSLIIS-RYTNVQVNAVAALVNLSLEK-IN  302 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~l~~~g~i~~Lv~lL~s-~~~~v~~~A~~~L~nLs~~~-~n  302 (546)
                      ...++.++..+.+++.+.+..|+..++.+.. ........+.+.|+++.|+.+|.. .+..++..|+++|.||+... ..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            3567899999999999999999999998764 344456678899999999999975 57889999999999999864 55


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC
Q 009036          303 KMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV  381 (546)
Q Consensus       303 k~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~  381 (546)
                      ...+.+.|+++.|+.+|.+++.+++..|+++|.+|+.+. +.+..+...|+++.|+.++.+.+..++..++++|.+|+..
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            666778899999999999999999999999999998764 6788888999999999999999999999999999999986


Q ss_pred             chh-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCc-ccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          382 KSN-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCS-DGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       382 ~~n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~-e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      ... .......++++.|+.++...+  +...++.+|.+|+... +....+.+.|+++.++.++.+   .+..++..|+.+
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~al~~  311 (503)
T d1wa5b_         235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA  311 (503)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC---CchhhhhhHHHH
Confidence            543 333455689999999997654  7888999999999754 456778899999999999998   468999999999


Q ss_pred             HHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          458 LYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      |.+++.+.......+...|+++.|..++.+.++.+++.+.++|.+++...
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            99999988777888889999999999999999999999999999998654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6e-20  Score=188.10  Aligned_cols=279  Identities=20%  Similarity=0.161  Sum_probs=214.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~~i  306 (546)
                      +++.||+.|+++++++|..|+..|.+++..++++|..+.+.|+||.|+.+|.+++++++..|+.+|.+|+. +++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999996 57889999


Q ss_pred             HhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhh----------------ccCCHHHHH
Q 009036          307 VRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLL----------------KSDSERTQH  369 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL----------------~~~~~~~~~  369 (546)
                      .+.|+++.|+.++.+ .+++++..|+.+|.+++..+..+......| ++.++..+                ...+..++.
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            999999999999875 488999999999999998776655544332 22222221                112334444


Q ss_pred             HHHHHHHHhhcCchhHHHHH------------------------------------------------------------
Q 009036          370 DSALALYHLSLVKSNRTKLV------------------------------------------------------------  389 (546)
Q Consensus       370 ~A~~aL~~Ls~~~~n~~~iv------------------------------------------------------------  389 (546)
                      .++.+|.+++...+++..++                                                            
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            44444444333333333222                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 009036          390 --------------------------------------------------------------------------------  389 (546)
Q Consensus       390 --------------------------------------------------------------------------------  389 (546)
                                                                                                      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                                            


Q ss_pred             -------hcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCC---CCCHHHHHHHHHH
Q 009036          390 -------KLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGT---ELSESTQESCVSV  457 (546)
Q Consensus       390 -------~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~---~~s~~~~e~Av~~  457 (546)
                             +.|+++.|++++.+.+  +++.++.+|.+|+..++++..+.+ ++++.++.+|....   ..++++++.|+.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence                   3355555555554432  666777888888887777776654 56888888886532   1245788999999


Q ss_pred             HHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHHHhhcCCc
Q 009036          458 LYALSHGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       458 L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      |.+|+..+...++.+.+.|+++.|+.++.+ +++.+++.|..+|..|..+.+
T Consensus       401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            999998887888888899999999999876 578999999999999976654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.9e-22  Score=162.27  Aligned_cols=75  Identities=27%  Similarity=0.375  Sum_probs=68.1

Q ss_pred             CCCCCCceeCcccccccCCCeecCCC-ccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009036           39 TAEPPGEFLCPVSGSLMADPVVVSSG-HTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCHKQSL  114 (546)
Q Consensus        39 ~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~  114 (546)
                      ..++|++|.||||+++|+|||+++|| |||||.||.+|+.. +..||.|++++...+|+||+.|+++|+.|+.++..
T Consensus        16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999876 59999999999975 34799999999999999999999999999999874

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.5e-20  Score=196.42  Aligned_cols=279  Identities=18%  Similarity=0.148  Sum_probs=240.8

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk~  304 (546)
                      .+.++.|++.|++++.+++..|+..|.+++..++..|..+.+.|+|+.|+.+|.+++.+++..++.+|.+++.. +.++.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999975 56677


Q ss_pred             HHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch
Q 009036          305 LIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS  383 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~  383 (546)
                      .+.+.|+++.|+.+|... ...++..++.+|.+++.+++++..+.+.|+++.|+.++.+++.+++..++++|.+++....
T Consensus       180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            778899999999999865 5789999999999999999999999999999999999999999999999999999976443


Q ss_pred             hHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 009036          384 NRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYA  460 (546)
Q Consensus       384 n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~  460 (546)
                      .  .....|+++.|++++.+.+  +++.++.+|.+|+. .++++..+.+.++++.|+.++.... ..+..++.|+.+|++
T Consensus       260 ~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~-~~~~~~~~a~~aL~~  336 (529)
T d1jdha_         260 K--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALRH  336 (529)
T ss_dssp             T--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             c--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhh-cchhHHHHHHHHhhc
Confidence            2  2233588999999998654  88899999999986 4566777889999999999886532 457889999999999


Q ss_pred             HhcCC---hhhHHHHHHCCcHHHHHHHHhcCC-HHHHHHHHHHHHHhhcCC
Q 009036          461 LSHGG---LRFKGLAAAAGMAEVLMRMERVGS-EHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       461 L~~~~---~~~~~~~~~~g~v~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~  507 (546)
                      |+...   +..+..+...|+++.|+.++..++ ......+..+|+.|+...
T Consensus       337 l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~  387 (529)
T d1jdha_         337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  387 (529)
T ss_dssp             HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             ccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhh
Confidence            99753   235556778899999999988765 457788888999998654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-16  Score=154.38  Aligned_cols=191  Identities=17%  Similarity=0.198  Sum_probs=166.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhcC-CchHHHHHhcCChHHH
Q 009036          238 SPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSLE-KINKMLIVRSGLVPPI  315 (546)
Q Consensus       238 s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~-~~nk~~i~~~g~l~~L  315 (546)
                      +.+.+.+..|+..|..++. +..++..+...|+++.|+. ++.+++.+++..|+.+|.+++.+ +..+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3456788999999999995 5678888999999999886 77889999999999999999985 6778888999999999


Q ss_pred             HHHHcc-CCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcC
Q 009036          316 VDVLMA-GSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNRTKLVKLG  392 (546)
Q Consensus       316 v~lL~~-~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~G  392 (546)
                      +.+|.+ .+++++..++.+|.+++.+. .++..+...|+++.|+++|++++..++..++.+|.+|+. .++++..+++.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 47999999999999999765 557777889999999999999999999999999999987 577899999999


Q ss_pred             cHHHHHHHHhCch--HHHHHHHHHHHhhCC-cccHHHHHh
Q 009036          393 SVNALLGMVNSGH--MTGRVLLILGNLASC-SDGRVAVLD  429 (546)
Q Consensus       393 av~~Lv~lL~~~~--~~e~al~~L~nLa~~-~e~r~~i~~  429 (546)
                      +++.|+.+|.+++  +++.|+.+|.+|+.. ++.+..+..
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999998754  999999999999974 444455543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-16  Score=152.83  Aligned_cols=193  Identities=18%  Similarity=0.150  Sum_probs=167.7

Q ss_pred             ccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHhhccccc-chhhHHhhcCChHHH
Q 009036          279 ISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDD-QNKTAIGVLGALPPL  356 (546)
Q Consensus       279 ~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~l~~L  356 (546)
                      .+.+.+.+..|+.+|.+|+.+.+|+..+...|+++.|+. +|.+++++++..|+.+|.+++.++ ..+..+...|+++.|
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            345677889999999999988899999999999999886 778889999999999999999865 567788889999999


Q ss_pred             HHhhcc-CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhC-CcccHHHHHhCC
Q 009036          357 LHLLKS-DSERTQHDSALALYHLSLV-KSNRTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLAS-CSDGRVAVLDSG  431 (546)
Q Consensus       357 v~lL~~-~~~~~~~~A~~aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~-~~e~r~~i~~~g  431 (546)
                      +.+|.+ .++.++..|+.+|.+|+.. +.++..++..|+++.|++++.+.+  ++..++.+|.+|+. .++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 5788999999999999975 556778889999999999998765  88899999999985 678899999999


Q ss_pred             cHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036          432 GVECLVGMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAA  474 (546)
Q Consensus       432 ~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~  474 (546)
                      +++.|+.+|.+   .++..++.|+.+|++|+..++.....+..
T Consensus       187 ~v~~L~~lL~~---~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999988   45789999999999999877655554443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.6e-16  Score=157.47  Aligned_cols=239  Identities=17%  Similarity=0.172  Sum_probs=192.0

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhc-CCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc-cchhhH
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSL-EKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD-DQNKTA  346 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~-~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~  346 (546)
                      +.||.|+.+|.+++++++..|+.+|.||+. ++++|..+.+.|+|+.|+.+|++++++++..|+.+|.+|+.. ++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            469999999999999999999999999997 588999999999999999999999999999999999999965 577899


Q ss_pred             HhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHh-----------------CchHHH
Q 009036          347 IGVLGALPPLLHLLKS-DSERTQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVN-----------------SGHMTG  408 (546)
Q Consensus       347 i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~-----------------~~~~~e  408 (546)
                      +.+.|+++.|+.++.. .+.+++..|+++|.+|+....++......|..+.+..++.                 +..+.+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999865 5888999999999999998877777776654444433322                 113777


Q ss_pred             HHHHHHHHhhCCcccHHHHHh-CCcHHHHHHHHccC--------------------------------------------
Q 009036          409 RVLLILGNLASCSDGRVAVLD-SGGVECLVGMLRKG--------------------------------------------  443 (546)
Q Consensus       409 ~al~~L~nLa~~~e~r~~i~~-~g~i~~Lv~lL~~~--------------------------------------------  443 (546)
                      .++.+|.+++.+.+++..+.. .|+++.++.++...                                            
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            888999999888888777764 56667766654210                                            


Q ss_pred             ----------------------------------------------------CCCCHHHHHHHHHHHHHHhcCCh-----
Q 009036          444 ----------------------------------------------------TELSESTQESCVSVLYALSHGGL-----  466 (546)
Q Consensus       444 ----------------------------------------------------~~~s~~~~e~Av~~L~~L~~~~~-----  466 (546)
                                                                          ...++..++.+..++..++....     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                00234556677777777765432     


Q ss_pred             hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          467 RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       467 ~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      ..+..+.+.|+++.|+.++.+.++.++..|..+|..|+...
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            23445667899999999999999999999999999998754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.2e-15  Score=120.97  Aligned_cols=62  Identities=19%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCc-ccHHHHHHH
Q 009036           44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVI-PNLALKSTI  105 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i  105 (546)
                      +.|.||||+++|.|||+++|||+||+.||++|++.+...||.|+.++...++. |..++.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            44689999999999999999999999999999987777899999998877766 666666554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-15  Score=126.36  Aligned_cols=67  Identities=12%  Similarity=0.152  Sum_probs=59.2

Q ss_pred             CCceeCcccccccCCCeecCCCccccHHHHHHHHhcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009036           43 PGEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLG--FTPTLVDGTTPDFSTVIPNLALKSTILNWC  109 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~  109 (546)
                      -+.|.||||+++|.|||+++|||+||+.||.+|+...  ...||.|+..+...++.||..+.++++++.
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            3568899999999999999999999999999999753  347999999998889999988888888774

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2.3e-15  Score=109.87  Aligned_cols=52  Identities=17%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             eeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Q 009036           46 FLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPN   98 (546)
Q Consensus        46 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn   98 (546)
                      +.||||+++|+|||++ .|||+|||+||.+|++.. ..||.|++++...+|+|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence            4799999999999988 699999999999999863 369999999998888874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.8e-15  Score=121.97  Aligned_cols=67  Identities=19%  Similarity=0.212  Sum_probs=59.4

Q ss_pred             CCCCceeCcccccccCCCeec-CCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009036           41 EPPGEFLCPVSGSLMADPVVV-SSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIPNLALKSTILNWCH  110 (546)
Q Consensus        41 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~  110 (546)
                      .+.+.|.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.||..|+.+|+.+..
T Consensus        18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            356788999999999999986 89999999999999842   49999999888899999999999988754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=102.55  Aligned_cols=50  Identities=12%  Similarity=0.042  Sum_probs=44.9

Q ss_pred             ceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 009036           45 EFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFST   94 (546)
Q Consensus        45 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~   94 (546)
                      ...||||++.++|||+++|||+||+.||.+|+..+...||.|+..+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34699999999999999999999999999999877778999999887544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.7e-12  Score=92.15  Aligned_cols=50  Identities=12%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             CceeCcccccccCCCeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 009036           44 GEFLCPVSGSLMADPVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTVIP   97 (546)
Q Consensus        44 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p   97 (546)
                      +.+.||||++.|+|||+++|||+||+.||++|    ...||.|++.++...-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            44689999999999999999999999999765    457999998877655444

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4e-11  Score=89.77  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=42.8

Q ss_pred             CceeCcccccccCCC-----eecCCCccccHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009036           44 GEFLCPVSGSLMADP-----VVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDFSTV   95 (546)
Q Consensus        44 ~~~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l   95 (546)
                      ++..||||++.+..+     ++++|||+||+.||.+|+..+...||.|++++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            467899999875332     6679999999999999998777789999998876554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.89  E-value=3.4e-10  Score=85.44  Aligned_cols=43  Identities=12%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             CcccccccCCCee-cCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           48 CPVSGSLMADPVV-VSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        48 CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      ||||++.|.+|++ ++|||+||..||.+|++. +..||.|+.++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999999866 699999999999999985 457999988654

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-09  Score=76.66  Aligned_cols=47  Identities=15%  Similarity=0.023  Sum_probs=39.2

Q ss_pred             eeCcccccccCC----CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCCC
Q 009036           46 FLCPVSGSLMAD----PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPDF   92 (546)
Q Consensus        46 ~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~   92 (546)
                      +.||||++-|.+    +++++|||+|++.||.+|++.++..||.|++++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            369999998854    34468999999999999998777789999988754

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=9.4e-07  Score=83.42  Aligned_cols=228  Identities=11%  Similarity=0.031  Sum_probs=148.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      ..+.|++.|++.++.++..|+..|..+..           ..+++.|+.++.+.++.++..|+.+|..+.........+ 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-   87 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-   87 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-
Confidence            35789999999999999999999987643           256899999999999999999999999887554433222 


Q ss_pred             hcCChHHHHH-HHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          308 RSGLVPPIVD-VLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       308 ~~g~l~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                          ++.+.. ++++.++.++..|+.+|..+......    .....++.+...+.+.++.++..|+.++..+.       
T Consensus        88 ----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-------  152 (276)
T d1oyza_          88 ----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-------  152 (276)
T ss_dssp             ----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred             ----HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-------
Confidence                333444 56677999999999999887654322    11235667777777778888887777766542       


Q ss_pred             HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCC--------------cc--cHH----HH---HhCCcHHHHHHHHc
Q 009036          387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASC--------------SD--GRV----AV---LDSGGVECLVGMLR  441 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~--------------~e--~r~----~i---~~~g~i~~Lv~lL~  441 (546)
                         ....++.+..++.+..  ....+..++.++...              ..  .+.    .+   ....+++.|++.+.
T Consensus       153 ---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~  229 (276)
T d1oyza_         153 ---DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK  229 (276)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred             ---hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhC
Confidence               1234455555554322  222222222222211              10  000    11   12347788888876


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhc-CCHHHHHHHHHHHH
Q 009036          442 KGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERV-GSEHVKEKAKRMLE  501 (546)
Q Consensus       442 ~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~-~s~~~k~~A~~lL~  501 (546)
                      +     +.++..++.+|..+..           .++++.|..++.. .+..++..|...|+
T Consensus       230 d-----~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         230 K-----NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             S-----SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             C-----hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            5     2356778788776642           2367888887765 46788888887764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.60  E-value=9.5e-09  Score=73.62  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             CCceeCcccccccCCC---eec-CCCccccHHHHHHHHhcCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADP---VVV-SSGHTFERACAHVCKTLGFTPTLVDGTTP   90 (546)
Q Consensus        43 p~~~~CpI~~~~m~dP---V~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~   90 (546)
                      .++..||||++-|.+.   +.+ +|||.|+..||.+|++. +..||.|+..+
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            4566799999999763   344 69999999999999975 55899998754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.7e-06  Score=89.67  Aligned_cols=263  Identities=7%  Similarity=0.027  Sum_probs=181.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ..++.+...+...+..+|..|+..|..+....+..   -.+.-++|.+..+..++....+..|+..+..+........  
T Consensus        87 ~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~--  161 (588)
T d1b3ua_          87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--  161 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH--
Confidence            44566666778888999999999999988753221   1233456766777777777778878777777765432221  


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCchhHH
Q 009036          307 VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKSNRT  386 (546)
Q Consensus       307 ~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~n~~  386 (546)
                       ....++.+..++.+.++.+|..|+.++..++..-....  .....++.|..++.+++..++..|+.+|..++..-... 
T Consensus       162 -~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-  237 (588)
T d1b3ua_         162 -KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             -HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred             -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH-
Confidence             12256778888899999999999999998876533221  22456677888888889999999999999887532211 


Q ss_pred             HHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 009036          387 KLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       387 ~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                       ....-.++.+..++.+.+  ++..++.+|.+++..-.  ..+.....++.+..++.+   .+..++..|+..|..++..
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d---~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhc---cchHHHHHHHHHHHHHHHH
Confidence             112236788888887765  78888888888875321  122334678888888887   4588999999999988863


Q ss_pred             -ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 009036          465 -GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMK  504 (546)
Q Consensus       465 -~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~  504 (546)
                       .........-..+++.+..++.+.++.+|..+...+..+.
T Consensus       312 l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence             2122222222346777888888888888887776666554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.5e-06  Score=89.97  Aligned_cols=263  Identities=11%  Similarity=0.121  Sum_probs=169.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      ..+.+.+.+.+.++.+|..++..|..+++.-..   ......+++.+..++.+++..++..|+.++..++.......  .
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~--~  239 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--L  239 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH--H
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH--H
Confidence            345566667888999999999999999875321   12234568888889999999999999999988875322221  1


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcC--chhH
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLV--KSNR  385 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~n~  385 (546)
                      ....++.+..++.+.+..+|..++.+|..+...-..  .+.....++.+..++.+.+.+++..|+.+|..++..  ....
T Consensus       240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~  317 (588)
T d1b3ua_         240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            223678888888888999999999999888643221  122345788899999999999999999999988763  2333


Q ss_pred             HHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          386 TKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       386 ~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ....-...++.+..++.+.+  ++..+..++..++..- +..... ...++.+...+..   .++.++..++..+..+..
T Consensus       318 ~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~~~-~~l~p~l~~~l~d---~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTI-EHLLPLFLAQLKD---ECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHH-HHTHHHHHHHHTC---SCHHHHHHHHTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhHHH-HHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHh
Confidence            33333467888888887654  5555555554443211 111111 2245666666665   346666666666555543


Q ss_pred             CChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          464 GGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       464 ~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      .- ......  ...++.+..++.+.+.++|..+..++..+..
T Consensus       393 ~~-~~~~~~--~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         393 VI-GIRQLS--QSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             HS-CHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hc-chhhhh--hHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            11 001111  1134556666666666666666666665543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1e-07  Score=79.20  Aligned_cols=51  Identities=16%  Similarity=0.054  Sum_probs=40.7

Q ss_pred             CCCCCceeCcccccccCCC------------------eecCCCccccHHHHHHHHhcC----CCCCCCCCCCC
Q 009036           40 AEPPGEFLCPVSGSLMADP------------------VVVSSGHTFERACAHVCKTLG----FTPTLVDGTTP   90 (546)
Q Consensus        40 ~~~p~~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~----~~~cp~~~~~~   90 (546)
                      ...+.+..||||++-|.+|                  ++++|||.|+..||.+|++..    +..||.|+..+
T Consensus        20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             hcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            3455667899999998765                  357999999999999999743    34799998765

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.18  E-value=7.7e-07  Score=64.67  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=41.7

Q ss_pred             CCceeCcccccccCCCeecCCC-----ccccHHHHHHHHhc-CCCCCCCCCCCCC
Q 009036           43 PGEFLCPVSGSLMADPVVVSSG-----HTFERACAHVCKTL-GFTPTLVDGTTPD   91 (546)
Q Consensus        43 p~~~~CpI~~~~m~dPV~~~~G-----~ty~r~~i~~~~~~-~~~~cp~~~~~~~   91 (546)
                      .+...|+||++-+.+|.+.+|+     |.|.+.||.+|+.. ++..||.|+..+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3567799999999999988774     99999999999974 6678999988754

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=4.5e-05  Score=71.37  Aligned_cols=201  Identities=13%  Similarity=0.086  Sum_probs=127.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhhcCCchHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRS-LIISRYTNVQVNAVAALVNLSLEKINKM  304 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~-lL~s~~~~v~~~A~~~L~nLs~~~~nk~  304 (546)
                      ..+++.+++.|++.++.++..|+..|..+.......      ...++.|.. ++.+.++.++..|+.+|.++........
T Consensus        49 ~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~------~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~  122 (276)
T d1oyza_          49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS  122 (276)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc------cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh
Confidence            467889999999999999999999998876432211      122344444 5677899999999999998875432221


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhcCch-
Q 009036          305 LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSLVKS-  383 (546)
Q Consensus       305 ~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-  383 (546)
                          ...++.+...+.+.++.++..|+.++....          ....++.+..++...+..++..+..++..+..... 
T Consensus       123 ----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  188 (276)
T d1oyza_         123 ----PKIVEQSQITAFDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD  188 (276)
T ss_dssp             ----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH
T ss_pred             ----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc
Confidence                124566777777778888888877776542          22334444444444444443333333332221100 


Q ss_pred             ---------------hHH-------HHHhcCcHHHHHHHHhCchHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHc
Q 009036          384 ---------------NRT-------KLVKLGSVNALLGMVNSGHMTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLR  441 (546)
Q Consensus       384 ---------------n~~-------~iv~~Gav~~Lv~lL~~~~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~  441 (546)
                                     .+.       .+....+++.|++.+.+.+++..++.+|..+.          +.++++.|..+|.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d~~vr~~a~~aL~~ig----------~~~~~~~L~~~l~  258 (276)
T d1oyza_         189 IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELG----------DKTLLPVLDTMLY  258 (276)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSCCHHHHHHHHHHC----------CGGGHHHHHHHHT
T ss_pred             cchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCChHHHHHHHHHHHHcC----------CHHHHHHHHHHHc
Confidence                           000       01123478888888887777778888887664          2368899999887


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 009036          442 KGTELSESTQESCVSVL  458 (546)
Q Consensus       442 ~~~~~s~~~~e~Av~~L  458 (546)
                      ..  .+.+++..|+..|
T Consensus       259 ~~--~d~~vr~~A~~~L  273 (276)
T d1oyza_         259 KF--DDNEIITSAIDKL  273 (276)
T ss_dssp             TS--SCCHHHHHHHHHH
T ss_pred             cC--CCHHHHHHHHHHH
Confidence            75  3567888888776

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=2.6e-05  Score=78.93  Aligned_cols=278  Identities=12%  Similarity=0.055  Sum_probs=181.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-PRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLI  306 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i  306 (546)
                      ....+...|...+.-....+...+..++..........-. ......+..+..+.+.+.+..++..|..|...+..|..+
T Consensus       123 ~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~f  202 (477)
T d1ho8a_         123 LEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVI  202 (477)
T ss_dssp             HHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hhHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHH
Confidence            3445666676666667777777777776654332221110 112233334446778889988999999888888888887


Q ss_pred             Hh--cCChHHHHHHHccC-----------------CHHHHHHHHHHHhhcccccchhhHHhhc--CChHHHHHhhcc-CC
Q 009036          307 VR--SGLVPPIVDVLMAG-----------------SAEAQEHACGAIFSLALDDQNKTAIGVL--GALPPLLHLLKS-DS  364 (546)
Q Consensus       307 ~~--~g~l~~Lv~lL~~~-----------------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~l~~Lv~lL~~-~~  364 (546)
                      ..  ...++.|+.+|+..                 ..+++-+++-+++-|+...+....+...  +.++.|+++++. ..
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~K  282 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIK  282 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCS
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence            53  34677788777531                 3477889999999999987776666553  458899999975 47


Q ss_pred             HHHHHHHHHHHHHhhcCch------hHHHHHhcCcHHHHHHHHhC----chHHHH-------HHHHHHHhhC--------
Q 009036          365 ERTQHDSALALYHLSLVKS------NRTKLVKLGSVNALLGMVNS----GHMTGR-------VLLILGNLAS--------  419 (546)
Q Consensus       365 ~~~~~~A~~aL~~Ls~~~~------n~~~iv~~Gav~~Lv~lL~~----~~~~e~-------al~~L~nLa~--------  419 (546)
                      .++.+.++.+|.||+....      ....|+..++.+.+-.+...    +++.+.       --..+..|++        
T Consensus       283 EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev  362 (477)
T d1ho8a_         283 EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL  362 (477)
T ss_dssp             HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            8899999999999986421      23445666776655444332    222221       1111122222        


Q ss_pred             -------Ccc---------cHHHHHhC--CcHHHHHHHHcc----C---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 009036          420 -------CSD---------GRVAVLDS--GGVECLVGMLRK----G---TELSESTQESCVSVLYALSHGGLRFKGLAAA  474 (546)
Q Consensus       420 -------~~e---------~r~~i~~~--g~i~~Lv~lL~~----~---~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~  474 (546)
                             .|.         +...+-+.  ..+..|+++|.+    +   ...++.+..-|+.=+..+|..-+..+.++.+
T Consensus       363 ~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~  442 (477)
T d1ho8a_         363 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK  442 (477)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             hcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHH
Confidence                   111         11222222  268899999963    1   0123445556666677788877788889999


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          475 AGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       475 ~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      .|+=..+++++.+.++++|..|..+++.|-.
T Consensus       443 lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         443 TGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6e-05  Score=83.42  Aligned_cols=274  Identities=13%  Similarity=0.083  Sum_probs=165.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINKML  305 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk~~  305 (546)
                      .++.+...+.+.+|..|+.|+..|..++....+.-.... ..+++.|+..+.++++.++..++++|..++..  +.....
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            345555677889999999999999998865432211111 34688899999999999999999999988752  222222


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc---
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL---  380 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~---  380 (546)
                      . -...++.++..+.+.++.++..|+.+|.++.....  ....+  ...++.|+..+.....+.+..+..++..++.   
T Consensus       475 ~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         475 Y-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             H-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             h-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            2 23578888898999999999999999998875321  11111  3356777777777666666666666666643   


Q ss_pred             CchhHHHHHhcCcHHHHHHHHhC----chHHHHHHHHHHHhhCC--cccHH---HHHhCCcHHHH--------HHHHccC
Q 009036          381 VKSNRTKLVKLGSVNALLGMVNS----GHMTGRVLLILGNLASC--SDGRV---AVLDSGGVECL--------VGMLRKG  443 (546)
Q Consensus       381 ~~~n~~~iv~~Gav~~Lv~lL~~----~~~~e~al~~L~nLa~~--~e~r~---~i~~~g~i~~L--------v~lL~~~  443 (546)
                      ..-++..+++ ..++.+++....    .......+.+|..++..  .....   .+.+ .++..+        .......
T Consensus       552 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         552 HHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence            1222223322 244555554432    11233344444444321  11111   1110 011111        1111111


Q ss_pred             --CCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          444 --TELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       444 --~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                        ...+......++.++..+... .......+.....++.+...+++.++.+|+.|..+|..|....
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~  696 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC  696 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence              112345556666677766652 2344555656667888889999999999999999998776543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=68.00  Aligned_cols=43  Identities=14%  Similarity=0.173  Sum_probs=34.6

Q ss_pred             CcccccccCC------------------CeecCCCccccHHHHHHHHhcCCCCCCCCCCCCC
Q 009036           48 CPVSGSLMAD------------------PVVVSSGHTFERACAHVCKTLGFTPTLVDGTTPD   91 (546)
Q Consensus        48 CpI~~~~m~d------------------PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~   91 (546)
                      |+||++-|.+                  +++++|||.|+..||.+|++. +.+||.|+....
T Consensus        24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            8888777766                  244699999999999999985 457999987653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.2e-05  Score=91.80  Aligned_cols=270  Identities=14%  Similarity=0.120  Sum_probs=169.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHH
Q 009036          228 QEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIV  307 (546)
Q Consensus       228 ~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~  307 (546)
                      .+..|+.++.+.|++.|.-|+..|......+...-..-....+++.|+.+|.+.++++|..|+.+|..|...-....  .
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence            46789999999999999999988887654321110000122468899999999999999999999998876533221  1


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHhhcccc----cchhh--HHhhcCChHHHHHhhcc-CCHHHHHHHHHHHHHhhc
Q 009036          308 RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD----DQNKT--AIGVLGALPPLLHLLKS-DSERTQHDSALALYHLSL  380 (546)
Q Consensus       308 ~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~----~~~k~--~i~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~  380 (546)
                       ...++.|+..+.+.+.+.+..+..+|..+...    .....  .......++.|...+.. .+..++..|+.+|..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             23567777777777777787777776654321    11110  00111233444444433 477888889988888765


Q ss_pred             Cchh-HHHHHhcCcHHHHHHHHhCch--HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHccCCCCCHHHHHHHHHH
Q 009036          381 VKSN-RTKLVKLGSVNALLGMVNSGH--MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRKGTELSESTQESCVSV  457 (546)
Q Consensus       381 ~~~n-~~~iv~~Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~  457 (546)
                      .... -... ...+++.|+..+.+.+  ++..|+.+|..|+..-..  . .-...+..+++.+....  +...+..++.+
T Consensus       161 ~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~-~~~~~~~~ll~~l~~~~--~~~~~~~~~~~  234 (1207)
T d1u6gc_         161 RQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--I-VFVDLIEHLLSELSKND--SMSTTRTYIQC  234 (1207)
T ss_dssp             HTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC--SSCSCTTHHHH
T ss_pred             HhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--H-HHHHHHHHHHHHHccCC--CHHHHHHHHHH
Confidence            2211 0000 1124556666666654  889999999999864321  1 11245677777775532  23344556667


Q ss_pred             HHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCc
Q 009036          458 LYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRAE  508 (546)
Q Consensus       458 L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~  508 (546)
                      |..++... ......  -..+++.++..+...++.+|+.|..+|..+.....
T Consensus       235 l~~l~~~~~~~~~~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         235 IAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcchhhHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence            77776532 111111  13467889999999999999999999988876554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.84  E-value=7.4e-07  Score=73.11  Aligned_cols=88  Identities=13%  Similarity=0.066  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHh
Q 009036          269 RLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIG  348 (546)
Q Consensus       269 g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  348 (546)
                      ..++.|+.+|.++++.++..|+.+|.++..          .+.++.|+..|++.++.+|..|+.+|..+          +
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----------~   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----------G   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----------C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHh----------C
Confidence            467889999999999999999999987632          23678999999999999999999999876          3


Q ss_pred             hcCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          349 VLGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       349 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      ....++.|..++.++++.++..|+.+|.
T Consensus        82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3456888889999999999999988763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00039  Score=69.06  Aligned_cols=274  Identities=12%  Similarity=0.059  Sum_probs=165.6

Q ss_pred             chhHHHHHHhcCC--CCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCc
Q 009036          226 NEQEDYFVQKLKS--PQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKI  301 (546)
Q Consensus       226 ~~~i~~lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~  301 (546)
                      .+.++.++..+.+  .++..+..++..+..+..........-.-..+++.++..+.+  .+.+++..|+.++.++.....
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            3567788887754  456667777888877765432222111223457777777765  367899999999988775422


Q ss_pred             hH--HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHH
Q 009036          302 NK--MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYH  377 (546)
Q Consensus       302 nk--~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~  377 (546)
                      ..  .........+.+...+.+.+++++..++.+|..+......  ...+ .......+...+.+.+.+++..|+..+..
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            11  1111223456677777888999999999999888654321  1111 11122334455667788888889888887


Q ss_pred             hhcCchhH---------------------HHHHhcCcHHHHHHHHhCc---------hHHHHHHHHHHHhhCCcccHHHH
Q 009036          378 LSLVKSNR---------------------TKLVKLGSVNALLGMVNSG---------HMTGRVLLILGNLASCSDGRVAV  427 (546)
Q Consensus       378 Ls~~~~n~---------------------~~iv~~Gav~~Lv~lL~~~---------~~~e~al~~L~nLa~~~e~r~~i  427 (546)
                      ++......                     ........++.+.+.+.+.         +++..+..++..++.....  .+
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  362 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  362 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence            76422100                     0111112344455544321         1566677777666642211  01


Q ss_pred             HhCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          428 LDSGGVECLVGMLRKGTELSESTQESCVSVLYALSHGG--LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       428 ~~~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~--~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      . ...++.+...+.+   .+...++.|+.+|..++.+.  ......+  ..+++.|+.++++.++.+|..|..+|..+++
T Consensus       363 ~-~~l~~~i~~~l~s---~~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             H-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            1 1133455555555   45788999999999888632  1222222  2477899999999999999999999998886


Q ss_pred             CCc
Q 009036          506 RAE  508 (546)
Q Consensus       506 ~~~  508 (546)
                      .-.
T Consensus       437 ~~~  439 (458)
T d1ibrb_         437 LLP  439 (458)
T ss_dssp             HGG
T ss_pred             Hhh
Confidence            543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.50  E-value=9.2e-05  Score=59.97  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=75.2

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKML  305 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~  305 (546)
                      .+.++.|++.|++.++.++..|+..|..+..           .+.++.|+.+|.++++.++..|+.+|..+..       
T Consensus        21 ~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-------   82 (111)
T d1te4a_          21 DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------   82 (111)
T ss_dssp             STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc-------
Confidence            3567889999999999999999999865432           3568999999999999999999999987632       


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHhh
Q 009036          306 IVRSGLVPPIVDVLMAGSAEAQEHACGAIFS  336 (546)
Q Consensus       306 i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~  336 (546)
                         .+.++.|..++++.++.+|..|+.+|..
T Consensus        83 ---~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          83 ---ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             ---HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence               3467888889999999999999988853

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.9e-05  Score=62.58  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             eCcccccccC--C-CeecCCCccccHHHHHHHHhc----CCC---CCCCCC
Q 009036           47 LCPVSGSLMA--D-PVVVSSGHTFERACAHVCKTL----GFT---PTLVDG   87 (546)
Q Consensus        47 ~CpI~~~~m~--d-PV~~~~G~ty~r~~i~~~~~~----~~~---~cp~~~   87 (546)
                      .||||++-+.  | |++++|||.||+.||.+|++.    +..   .||.++
T Consensus         7 ~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             cCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4999999875  3 555689999999999999852    322   588654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00066  Score=74.76  Aligned_cols=272  Identities=14%  Similarity=0.050  Sum_probs=155.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC--CchH
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE--KINK  303 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~--~~nk  303 (546)
                      ...++.++..|++.++.+|..|++.|..++.........-.-..+++.|+..+.+.++.+++.|+.+|.++...  +...
T Consensus       435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            34567788888999999999999999988753211111111246788899999999999999999999988753  2211


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccc---cchhhHHhhcCChHHHHHhhcc---CCHHHHHHHHHHHHH
Q 009036          304 MLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALD---DQNKTAIGVLGALPPLLHLLKS---DSERTQHDSALALYH  377 (546)
Q Consensus       304 ~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~i~~~g~l~~Lv~lL~~---~~~~~~~~A~~aL~~  377 (546)
                      ..+  ...++.|+..+.......+..+..++..++..   .-.+..+.. ..++.++..+..   ++. .....+.+|..
T Consensus       515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~le~l~~  590 (888)
T d1qbkb_         515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDK-DLFPLLECLSS  590 (888)
T ss_dssp             GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCT-THHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchH-HHHHHHHHHHH
Confidence            111  12456677777776666666666666655432   111111111 233444444432   222 22334444544


Q ss_pred             hhcC--c---hhHHHHHhcCcHHHHHHHHh---------------CchHHHHHHHHHHHhhCC-cccHHHHH-hCCcHHH
Q 009036          378 LSLV--K---SNRTKLVKLGSVNALLGMVN---------------SGHMTGRVLLILGNLASC-SDGRVAVL-DSGGVEC  435 (546)
Q Consensus       378 Ls~~--~---~n~~~iv~~Gav~~Lv~lL~---------------~~~~~e~al~~L~nLa~~-~e~r~~i~-~~g~i~~  435 (546)
                      +...  .   .....+... ++..+...+.               +.+....++.++..+... ...-..++ ....++.
T Consensus       591 i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~  669 (888)
T d1qbkb_         591 VATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL  669 (888)
T ss_dssp             HHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHH
T ss_pred             HHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHH
Confidence            4331  1   111111111 1122221111               012455566666666531 11223333 4566777


Q ss_pred             HHHHHccCCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          436 LVGMLRKGTELSESTQESCVSVLYALSHGG-LRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       436 Lv~lL~~~~~~s~~~~e~Av~~L~~L~~~~-~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      +...+.+   .+..+++.|..+|..++... ......+..  .++.|..-+.+....++..|.+++-.|+...
T Consensus       670 l~~~l~~---~~~~vr~~a~~llgdl~~~~~~~~~~~l~~--~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         670 MYQCMQD---KMPEVRQSSFALLGDLTKACFQHVKPCIAD--FMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHHTC---SSHHHHHHHHHHHHHHHHHCGGGTGGGHHH--HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCC---CChHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            7787876   46889999999998887632 222222222  4566777777778889999999988877543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00053  Score=77.71  Aligned_cols=224  Identities=13%  Similarity=0.090  Sum_probs=141.6

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC----Cc-
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLE----KI-  301 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~----~~-  301 (546)
                      ..++.+++.|.+.+.++|..|++.|..+...-.....    ..+++.|+..+.+++...+..+..+|..+...    .. 
T Consensus        45 ~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~  120 (1207)
T d1u6gc_          45 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  120 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccccc
Confidence            4578889999999999999999999999876443221    24577777777777888887777776655321    11 


Q ss_pred             --hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          302 --NKMLIVRSGLVPPIVDVLMAG-SAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       302 --nk~~i~~~g~l~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                        ....+ -...++.+...+... +..++..|+.+|..+......--.-.....++.|+..|.+.+..+++.|+.+|..|
T Consensus       121 ~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l  199 (1207)
T d1u6gc_         121 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL  199 (1207)
T ss_dssp             CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             chhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence              11111 112344455544443 78889999988887754321100001123567788888888999999999999999


Q ss_pred             hcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHh--CCcHHHHHHHHccCCCCCHHHHHH
Q 009036          379 SLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLD--SGGVECLVGMLRKGTELSESTQES  453 (546)
Q Consensus       379 s~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~--~g~i~~Lv~lL~~~~~~s~~~~e~  453 (546)
                      +..-...   .-...++.++..+...   ..+..++.+|..|+.....  .+..  ...++.+++.+..   .+++.++.
T Consensus       200 ~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~---~~~~~r~~  271 (1207)
T d1u6gc_         200 VMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELREY  271 (1207)
T ss_dssp             TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTHHH
T ss_pred             HHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcC---ccHHHHHH
Confidence            7643211   1124567777666432   1444455666666542211  1222  4577888888877   35678888


Q ss_pred             HHHHHHHHhc
Q 009036          454 CVSVLYALSH  463 (546)
Q Consensus       454 Av~~L~~L~~  463 (546)
                      ++.+|..++.
T Consensus       272 al~~l~~l~~  281 (1207)
T d1u6gc_         272 CIQAFESFVR  281 (1207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887765

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.0026  Score=68.17  Aligned_cols=263  Identities=11%  Similarity=0.033  Sum_probs=158.1

Q ss_pred             hhHHHHHH-hcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCCchH
Q 009036          227 EQEDYFVQ-KLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS--RYTNVQVNAVAALVNLSLEKINK  303 (546)
Q Consensus       227 ~~i~~lv~-~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s--~~~~v~~~A~~~L~nLs~~~~nk  303 (546)
                      ..+..++. .+.+++.++|..|-..|..+..++.        .+++..|...+.+  .+..++..|+..|.|........
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~   75 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV   75 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccch
Confidence            44455554 4678899999999999988776432        2567778887764  35778888888888765432211


Q ss_pred             HH------H-------HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccC-CHHHH
Q 009036          304 ML------I-------VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSD-SERTQ  368 (546)
Q Consensus       304 ~~------i-------~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~-~~~~~  368 (546)
                      ..      .       .+..+-..++..|.+.+..++..++.++..++..+-..   .. ...++.|+..+.+. +...+
T Consensus        76 ~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~---~~wpeli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc---CchHHHHHHHHHHhcCCCcHHHH
Confidence            00      0       01112355677778889999999999998876432110   00 23567777777764 45677


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcC---cHHHHHHHHhC----chHHHHHHHHHHHhhCCcccHHH--HHhCCcHHHHHHH
Q 009036          369 HDSALALYHLSLVKSNRTKLVKLG---SVNALLGMVNS----GHMTGRVLLILGNLASCSDGRVA--VLDSGGVECLVGM  439 (546)
Q Consensus       369 ~~A~~aL~~Ls~~~~n~~~iv~~G---av~~Lv~lL~~----~~~~e~al~~L~nLa~~~e~r~~--i~~~g~i~~Lv~l  439 (546)
                      ..|+.+|..++..-.....-.-..   .+..++..+..    ..++..++.+|.++...-.....  ......++.|...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            788889988875322211111111   22333333322    23788899999888754322111  0112245666666


Q ss_pred             HccCCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcH-HHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          440 LRKGTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMA-EVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       440 L~~~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v-~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      +..   .+++.+..++.+|..++.. .......+..  .+ ..+.....+.++.++..+.+++..++.
T Consensus       233 ~~~---~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         233 TQA---EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTC---SCHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             hcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            766   4688899999999888763 2222322222  22 233444567788888888877766643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.039  Score=58.82  Aligned_cols=272  Identities=13%  Similarity=0.070  Sum_probs=159.7

Q ss_pred             hhHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCCch
Q 009036          227 EQEDYFVQKLKSP--QVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEKIN  302 (546)
Q Consensus       227 ~~i~~lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~~n  302 (546)
                      +.++.+++.+.++  ....+..++..|..++++-....-.-.-..+++.++..+.+.  +.+++..|+.++.++......
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            5678888888544  366777888888888764221111111135677888877644  578888888888776543211


Q ss_pred             HH--HHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccch--hhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHh
Q 009036          303 KM--LIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQN--KTAIGVLGALPPLLHLLKSDSERTQHDSALALYHL  378 (546)
Q Consensus       303 k~--~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~L  378 (546)
                      ..  .....-.++.+...+...+.+++..++..|..+......  ... ........+...+.+.+.+++..++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHH-HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            10  011112456677777888999999999999888654321  221 1223444555666777888888888777766


Q ss_pred             hcCchh---------------------HHHHHhcCcHHHHHHHHhCc---------hHHHHHHHHHHHhhCCcccHHHHH
Q 009036          379 SLVKSN---------------------RTKLVKLGSVNALLGMVNSG---------HMTGRVLLILGNLASCSDGRVAVL  428 (546)
Q Consensus       379 s~~~~n---------------------~~~iv~~Gav~~Lv~lL~~~---------~~~e~al~~L~nLa~~~e~r~~i~  428 (546)
                      +.....                     -........++.+...+...         .++..+..+|..++...       
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-------  359 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh-------
Confidence            542110                     00111112233333333221         15555666665555321       


Q ss_pred             hCCcHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcCC-h-hhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          429 DSGGVECLVGMLRKG-TELSESTQESCVSVLYALSHGG-L-RFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       429 ~~g~i~~Lv~lL~~~-~~~s~~~~e~Av~~L~~L~~~~-~-~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      ...+++.++..+... ...+...++.++..+..+.... . ........  .++.+...+.+.++.++..|..++..+++
T Consensus       360 ~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH--HHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            122344444443321 1145677888888887776542 2 22333332  67888999999999999999999999886


Q ss_pred             CCc
Q 009036          506 RAE  508 (546)
Q Consensus       506 ~~~  508 (546)
                      .-.
T Consensus       438 ~~~  440 (876)
T d1qgra_         438 LLP  440 (876)
T ss_dssp             HCG
T ss_pred             Hcc
Confidence            543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0087  Score=58.75  Aligned_cols=261  Identities=11%  Similarity=0.051  Sum_probs=152.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC-ch-HHH
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK-IN-KML  305 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~-~n-k~~  305 (546)
                      ..++..+-+++.+++.+|-..|..+...+.        .+++..|...+.+.  +..++..|+..|.|..... .. +..
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            356677778999999999999998887531        24567777777543  5678888888887765432 11 111


Q ss_pred             HH----------hcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhcc--CCHHHHHHHHH
Q 009036          306 IV----------RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKS--DSERTQHDSAL  373 (546)
Q Consensus       306 i~----------~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~--~~~~~~~~A~~  373 (546)
                      ..          .......++..+.+.+.. +..++.++..++.......  .-...++.|+..+.+  .+...+..++.
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~l~  151 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLE  151 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCcc--cCcchhHHHHHHHHhhcchHHHHHHHHH
Confidence            11          112334455555554332 2233444443332111100  014578888888866  35667778888


Q ss_pred             HHHHhhcC-chhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHHHHhhCCcccHHH--HHhCCcHHHHHHHHccCCCC
Q 009036          374 ALYHLSLV-KSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLILGNLASCSDGRVA--VLDSGGVECLVGMLRKGTEL  446 (546)
Q Consensus       374 aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L~nLa~~~e~r~~--i~~~g~i~~Lv~lL~~~~~~  446 (546)
                      +|..++.. ............++.++..+.+.    .++..++.++.++.........  .......+.+...+..   .
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~  228 (458)
T d1ibrb_         152 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---P  228 (458)
T ss_dssp             HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC---S
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC---C
Confidence            88877652 22211111123566777777542    3788899999888864332111  1112234455555555   4


Q ss_pred             CHHHHHHHHHHHHHHhcCChh-hHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          447 SESTQESCVSVLYALSHGGLR-FKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~~~~-~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      +++.+..++.+|..++..... ....+ .......+.....+.++.++..|...+..++.
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            688999999999988763322 11111 11233455666778888999999988887754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.061  Score=53.65  Aligned_cols=252  Identities=11%  Similarity=0.097  Sum_probs=150.4

Q ss_pred             chhHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChhhhH---Hhhc-CC-hHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036          226 NEQEDYFVQKLK-SPQVHEVEEALISLRKLTRSREETRV---SLCT-PR-LLLALRSLIISRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       226 ~~~i~~lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~---~l~~-~g-~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~  299 (546)
                      ...+..+++.|. .+..+...-.+..+..+..+++....   .+.+ .. .-+++..++..++.-+...+..++..++..
T Consensus        73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            345677788774 55677777777777777766543222   1222 22 234455556666766777777777776654


Q ss_pred             CchHHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh--cCChHHHHHhhccCCHHHHHHHHHHH
Q 009036          300 KINKMLIVRS--GLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV--LGALPPLLHLLKSDSERTQHDSALAL  375 (546)
Q Consensus       300 ~~nk~~i~~~--g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL  375 (546)
                      ........+.  .....+-.+...++......++..|..|...++.|..+-.  ...++.|+++|+..            
T Consensus       153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a------------  220 (477)
T d1ho8a_         153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRA------------  220 (477)
T ss_dssp             TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHH------------
T ss_pred             cccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHH------------
Confidence            2221221111  1223333333556777887888888888888888887743  45677777776531            


Q ss_pred             HHhhcCchhHHHHHhcCcHHHHHHHHhCc---hHHHHHHHHHHHhhCCcccHHHHHhCC--cHHHHHHHHccCCCCCHHH
Q 009036          376 YHLSLVKSNRTKLVKLGSVNALLGMVNSG---HMTGRVLLILGNLASCSDGRVAVLDSG--GVECLVGMLRKGTELSEST  450 (546)
Q Consensus       376 ~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---~~~e~al~~L~nLa~~~e~r~~i~~~g--~i~~Lv~lL~~~~~~s~~~  450 (546)
                                   +..+....++.-..++   .+..+++-+++.|+-.++....+.+..  .|+.|+++++..  .-+++
T Consensus       221 -------------~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s--~KEKv  285 (477)
T d1ho8a_         221 -------------TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT--IKEKV  285 (477)
T ss_dssp             -------------HC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC--CSHHH
T ss_pred             -------------hcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh--hHHHH
Confidence                         0000111111111221   267889999999999999888888764  589999999875  45788


Q ss_pred             HHHHHHHHHHHhcCCh-----hhHHHHHHCCcHHHHHHHHhcC--CHHHHHHHHHHHHHhh
Q 009036          451 QESCVSVLYALSHGGL-----RFKGLAAAAGMAEVLMRMERVG--SEHVKEKAKRMLELMK  504 (546)
Q Consensus       451 ~e~Av~~L~~L~~~~~-----~~~~~~~~~g~v~~L~~ll~~~--s~~~k~~A~~lL~~L~  504 (546)
                      ..-++.+|.|++....     .....+...++++.+..|....  ++++.+-...+-..|.
T Consensus       286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~  346 (477)
T d1ho8a_         286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE  346 (477)
T ss_dssp             HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            8999999999987421     1233455666666655554433  6666655555444443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.0045  Score=66.22  Aligned_cols=271  Identities=11%  Similarity=0.116  Sum_probs=151.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCCchHHHHHhc
Q 009036          230 DYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISRYTNVQVNAVAALVNLSLEKINKMLIVRS  309 (546)
Q Consensus       230 ~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~~nk~~i~~~  309 (546)
                      +.+...+.+.++..+..++..+..++.........-.-..+++.++..+.++++.++..++.++..++..-..  .+...
T Consensus       372 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~  449 (861)
T d2bpta1         372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE--SIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG--GSCTT
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch--hhhhH
Confidence            3444556788899999999999888865433222111234788899999999999999999999887643110  00112


Q ss_pred             CChHHHHHHHc---cCCHHHHHHHHHHHhhcccc--cchhhHHh--hcCChHHHHHhhcc--CCHHHHHHHHHHHHHhhc
Q 009036          310 GLVPPIVDVLM---AGSAEAQEHACGAIFSLALD--DQNKTAIG--VLGALPPLLHLLKS--DSERTQHDSALALYHLSL  380 (546)
Q Consensus       310 g~l~~Lv~lL~---~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~--~~g~l~~Lv~lL~~--~~~~~~~~A~~aL~~Ls~  380 (546)
                      ..++.++..+.   ..++.++..++.++..+...  +.....+.  ....+..|+.....  .+..++..+..+|..+..
T Consensus       450 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~  529 (861)
T d2bpta1         450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE  529 (861)
T ss_dssp             TTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            34444444332   34677777887777766432  11111111  12344555555543  244566777777777754


Q ss_pred             Cc-hh-HHHHHh--cCcHHHHHHHHhCc-------------hHHHHHHHHHHHhhC-CcccHHHHHhCCcHHHHHHHHcc
Q 009036          381 VK-SN-RTKLVK--LGSVNALLGMVNSG-------------HMTGRVLLILGNLAS-CSDGRVAVLDSGGVECLVGMLRK  442 (546)
Q Consensus       381 ~~-~n-~~~iv~--~Gav~~Lv~lL~~~-------------~~~e~al~~L~nLa~-~~e~r~~i~~~g~i~~Lv~lL~~  442 (546)
                      .. +. ...+..  ......|...+...             .+...+..++..+.. ..+.-..+ -...+..+++.+..
T Consensus       530 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~  608 (861)
T d2bpta1         530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEK  608 (861)
T ss_dssp             HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHS
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhccc
Confidence            22 21 211111  12222333333221             022233333333321 11100000 01244556666665


Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcCC
Q 009036          443 GTELSESTQESCVSVLYALSHG-GLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKGRA  507 (546)
Q Consensus       443 ~~~~s~~~~e~Av~~L~~L~~~-~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~~~  507 (546)
                      .  .+...++.++.++..++.. .+.....+..  +++.|+..+++.++.++..|..++..+....
T Consensus       609 ~--~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~--i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~  670 (861)
T d2bpta1         609 K--DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             T--TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             C--CchhHHHHHHHHHHHHHHHhhHHHHHHHHH--HhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            3  3456788888888888763 3344444443  6788889999999999999999998887644

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.056  Score=57.52  Aligned_cols=260  Identities=11%  Similarity=0.053  Sum_probs=154.8

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhhcCC-ch-HHHH
Q 009036          231 YFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIISR--YTNVQVNAVAALVNLSLEK-IN-KMLI  306 (546)
Q Consensus       231 ~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s~--~~~v~~~A~~~L~nLs~~~-~n-k~~i  306 (546)
                      .++...-+++.+.+..|-..|..+.+.+.        .|++..|...+.+.  +..++..|+-.|.|..... .. +...
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            45555568899999999999988776431        25677888877543  5778888888888865432 11 1110


Q ss_pred             ----------HhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccchhhHHhh-cCChHHHHHhhccC--CHHHHHHHHH
Q 009036          307 ----------VRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQNKTAIGV-LGALPPLLHLLKSD--SERTQHDSAL  373 (546)
Q Consensus       307 ----------~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~l~~Lv~lL~~~--~~~~~~~A~~  373 (546)
                                .+...-..++..|.+.+. .+..++.++..++..+-..   .. .+.++.|+..+.+.  +..++..++.
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~---~~Wpeli~~L~~~l~~~~~~~~~~~~~l~  152 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLE  152 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCc---cccHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence                      011233556677766543 3445666666665432110   11 46788898888654  4677888889


Q ss_pred             HHHHhhcC-chhHHHHHhcCcHHHHHHHHhCc----hHHHHHHHHHHHhhCCcccHHHHH--hCCcHHHHHHHHccCCCC
Q 009036          374 ALYHLSLV-KSNRTKLVKLGSVNALLGMVNSG----HMTGRVLLILGNLASCSDGRVAVL--DSGGVECLVGMLRKGTEL  446 (546)
Q Consensus       374 aL~~Ls~~-~~n~~~iv~~Gav~~Lv~lL~~~----~~~e~al~~L~nLa~~~e~r~~i~--~~g~i~~Lv~lL~~~~~~  446 (546)
                      +|..++.. ......-.....++.++..+.+.    .++..++.++.++...........  ..-.++.+...+..   .
T Consensus       153 ~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~  229 (876)
T d1qgra_         153 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---P  229 (876)
T ss_dssp             HHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC---S
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC---C
Confidence            99888752 21111111114567777777543    277788888877664322111100  11134445555554   4


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 009036          447 SESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRMERVGSEHVKEKAKRMLELMKG  505 (546)
Q Consensus       447 s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll~~~s~~~k~~A~~lL~~L~~  505 (546)
                      +.+.+..++.+|..++......-.-.....+...+.....+..+.++..+...+..++.
T Consensus       230 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            68889999999998886432222212222344566666778888888888877766654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.56  Score=43.88  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=142.0

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHH----hh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcCC
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVS----LC-TPRLLLALRSLIISRYTNVQVNAVAALVNLSLEK  300 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----l~-~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~~  300 (546)
                      .+.+..++..|..-+.+.+..++.....+.+.....|..    +. ...++..|+.-..  ++++--.+-..|.....++
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHhhH
Confidence            355678888888889999999999999888876555432    33 2455555555554  3444444566677777777


Q ss_pred             chHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHhhcccccc-h-hhHHhh--cCChHHHHHhhccCCHHHHHHHHHHHH
Q 009036          301 INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDDQ-N-KTAIGV--LGALPPLLHLLKSDSERTQHDSALALY  376 (546)
Q Consensus       301 ~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~  376 (546)
                      .-...|.....+..+.+....++-++...|..++..|..... . .+.+..  ...+...-.+|.+++--+++.++..|.
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            777777777788888999999999999999999987655432 2 222222  335666778899999999999999999


Q ss_pred             HhhcCchhHHHHHhc----CcHHHHHHHHhCch--HHHHHHHHHHHhhCCc
Q 009036          377 HLSLVKSNRTKLVKL----GSVNALLGMVNSGH--MTGRVLLILGNLASCS  421 (546)
Q Consensus       377 ~Ls~~~~n~~~iv~~----Gav~~Lv~lL~~~~--~~e~al~~L~nLa~~~  421 (546)
                      .|-..+.|..-|...    .-+..++.+|.+.+  ++-.|.-++.....++
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            999988887666443    56778888888754  8888888887766544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=2.3  Score=39.54  Aligned_cols=192  Identities=11%  Similarity=0.038  Sum_probs=139.0

Q ss_pred             cCChHHHHHHHHccCCHHHHHHHHHHHHHhhcC-CchH----HHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHhhcccc
Q 009036          267 TPRLLLALRSLIISRYTNVQVNAVAALVNLSLE-KINK----MLIVRSGLVPPIVDVLMA-GSAEAQEHACGAIFSLALD  340 (546)
Q Consensus       267 ~~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~-~~nk----~~i~~~g~l~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~  340 (546)
                      ..+++..|+..|..=+-+.+..+..+..++... ..++    +.+...  .+.|..+++- .++++-..+-..|......
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREcik~  144 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECIRH  144 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHHhh
Confidence            467888999999888999999999999988764 2333    334422  2323333321 2566666777788888877


Q ss_pred             cchhhHHhhcCChHHHHHhhccCCHHHHHHHHHHHHHhhc-CchhHHHHHhc---CcHHHHHHHHhCch--HHHHHHHHH
Q 009036          341 DQNKTAIGVLGALPPLLHLLKSDSERTQHDSALALYHLSL-VKSNRTKLVKL---GSVNALLGMVNSGH--MTGRVLLIL  414 (546)
Q Consensus       341 ~~~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~n~~~iv~~---Gav~~Lv~lL~~~~--~~e~al~~L  414 (546)
                      +.....|.....+..+++.+..++=++-..|..++..|-. +.......+..   -.+.....+|.+++  ++..++..|
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            7777777777789999999999888998999999988765 33444445444   34555667777776  788999999


Q ss_pred             HHhhCCcccHHHHHh----CCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 009036          415 GNLASCSDGRVAVLD----SGGVECLVGMLRKGTELSESTQESCVSVLYALSH  463 (546)
Q Consensus       415 ~nLa~~~e~r~~i~~----~g~i~~Lv~lL~~~~~~s~~~~e~Av~~L~~L~~  463 (546)
                      ..|-....+...+..    ..-+..++.+|++   .+..++-.|..+.--...
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd---~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRD---KSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcC---chhhHHHHhhhHhhhhhc
Confidence            999988888776543    3467888888888   568888888877755544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.72  E-value=0.02  Score=52.24  Aligned_cols=103  Identities=12%  Similarity=0.074  Sum_probs=49.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHH-----HHHhcc-ChhhhHHhhcCChHHHHHHHHccCCHHHHHHHHHH-----HHHhhcC
Q 009036          231 YFVQKLKSPQVHEVEEALISL-----RKLTRS-REETRVSLCTPRLLLALRSLIISRYTNVQVNAVAA-----LVNLSLE  299 (546)
Q Consensus       231 ~lv~~L~s~~~~~~~~Al~~L-----~~La~~-~~~~r~~l~~~g~i~~Lv~lL~s~~~~v~~~A~~~-----L~nLs~~  299 (546)
                      .|+..++..+++++..|+..|     ..+... +...|......=..+.|..++.+++..++..++..     |..+..+
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D  149 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRD  149 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTC
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcC
Confidence            345566777777777776543     122222 12233333322223445556666666666655543     2222222


Q ss_pred             C--chHHHHHhcCChHHHHHHHccCCHHHHHHHHHH
Q 009036          300 K--INKMLIVRSGLVPPIVDVLMAGSAEAQEHACGA  333 (546)
Q Consensus       300 ~--~nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~  333 (546)
                      +  +.+..++..-..+.|..++++.++.++..++..
T Consensus       150 ~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         150 EDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             SCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            1  233333333344455555555566666555543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=1.6  Score=41.34  Aligned_cols=169  Identities=17%  Similarity=0.133  Sum_probs=107.3

Q ss_pred             HHHHhcCCCC-HHHHHHHHHHHHHHhccChh-hhHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhh
Q 009036          231 YFVQKLKSPQ-VHEVEEALISLRKLTRSREE-TRVSLCTPRLLLALRSLIIS-----------RYTNVQVNAVAALVNLS  297 (546)
Q Consensus       231 ~lv~~L~s~~-~~~~~~Al~~L~~La~~~~~-~r~~l~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~~L~nLs  297 (546)
                      ..|..|+++. .+.....+..|+--.+.++. ....| ..+|+..|+.+|..           .+...+..++.+|..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            3455564443 33334455566544444443 33334 45677778877641           13567778889998888


Q ss_pred             cCCchHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHhhccccc---chh----------hHHhhcCChHHHHHhhccC
Q 009036          298 LEKINKMLIV-RSGLVPPIVDVLMAGSAEAQEHACGAIFSLALDD---QNK----------TAIGVLGALPPLLHLLKSD  363 (546)
Q Consensus       298 ~~~~nk~~i~-~~g~l~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~---~~k----------~~i~~~g~l~~Lv~lL~~~  363 (546)
                      ....+...+. ...++..|+..|.+..+.++..|..+|..++...   +..          ....+.+-+..++..|+.+
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            7766655555 4578999999999999999999999998887542   111          1223356788888888764


Q ss_pred             -CHHHHHHHHHHHHHhhcCch-------hHHHHHhcCcHHHHHHH
Q 009036          364 -SERTQHDSALALYHLSLVKS-------NRTKLVKLGSVNALLGM  400 (546)
Q Consensus       364 -~~~~~~~A~~aL~~Ls~~~~-------n~~~iv~~Gav~~Lv~l  400 (546)
                       +.+.+..++..+-.|....+       .|..+...|..+.+-.+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l  209 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  209 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHH
Confidence             56676666555555554332       36667777776655444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.53  E-value=0.23  Score=44.93  Aligned_cols=104  Identities=11%  Similarity=0.044  Sum_probs=52.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHH-----HHhhcCCc--hHHHHHhcCChHHHHHHHccCCHHHHHHHHHH-----Hhhcc
Q 009036          271 LLALRSLIISRYTNVQVNAVAAL-----VNLSLEKI--NKMLIVRSGLVPPIVDVLMAGSAEAQEHACGA-----IFSLA  338 (546)
Q Consensus       271 i~~Lv~lL~s~~~~v~~~A~~~L-----~nLs~~~~--nk~~i~~~g~l~~Lv~lL~~~~~~~~~~Aa~~-----L~~Ls  338 (546)
                      +..|..+++.+++.|+..|+..|     ..|..+++  .+...+..=..+.|..++.+.+..++..++..     |..|.
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~  147 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM  147 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence            44555666666666666665432     22333321  22222332234556666667777777666653     22333


Q ss_pred             cccc--hhhHHhhcCChHHHHHhhccCCHHHHHHHHHH
Q 009036          339 LDDQ--NKTAIGVLGALPPLLHLLKSDSERTQHDSALA  374 (546)
Q Consensus       339 ~~~~--~k~~i~~~g~l~~Lv~lL~~~~~~~~~~A~~a  374 (546)
                      .+.+  .+..+...-..+.|..++++.++.++..++..
T Consensus       148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            3322  23333333345556666666677776666643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=87.71  E-value=8.8  Score=35.77  Aligned_cols=200  Identities=18%  Similarity=0.169  Sum_probs=114.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhcCChHHHHHHHHcc----CCHHHHHHHHHHHHHhhc---
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCTPRLLLALRSLIIS----RYTNVQVNAVAALVNLSL---  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~~g~i~~Lv~lL~s----~~~~v~~~A~~~L~nLs~---  298 (546)
                      .+.+..+...+.++..... +|...|..++....-      ....+..+..++.+    .++.+...+.-++.+|..   
T Consensus        87 ~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~P------t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          87 SEALLFLKRTLASEQLTSA-EATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCC------CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4666777777755543222 233444444332111      12345666677664    467777777777766643   


Q ss_pred             -CCchHHHHHhcCChHHHHHHH----ccCCHHHHHHHHHHHhhcccccchhhHHhhcCChHHHHHhhccC-------CHH
Q 009036          299 -EKINKMLIVRSGLVPPIVDVL----MAGSAEAQEHACGAIFSLALDDQNKTAIGVLGALPPLLHLLKSD-------SER  366 (546)
Q Consensus       299 -~~~nk~~i~~~g~l~~Lv~lL----~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~l~~Lv~lL~~~-------~~~  366 (546)
                       .....    ....++.+...|    ..++.+-+..++.+|.|+          +....++.|..++...       ...
T Consensus       160 ~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----------g~p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         160 ANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA----------GQPNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TCGGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             cCCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc----------CCHhHHHHHHHHhcccccccccccHH
Confidence             11111    112344444444    456777777788888887          3345677788777542       567


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCch----HHHHHHHHHHHhhCCcccHHHHHhCCcHHHHHHHHcc
Q 009036          367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSGH----MTGRVLLILGNLASCSDGRVAVLDSGGVECLVGMLRK  442 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~~----~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv~lL~~  442 (546)
                      ++..|+++|.++.......       +.+.|..++.+..    ++-.|..+|..  ..|.       ...+..+...+..
T Consensus       226 vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~-------~~~l~~i~~~l~~  289 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-------VALVSMVAVRLRR  289 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-------HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCC-------HHHHHHHHHHHHh
Confidence            9999999999886643211       2345566665532    55545544432  2221       1245667777765


Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC
Q 009036          443 GTELSESTQESCVSVLYALSHG  464 (546)
Q Consensus       443 ~~~~s~~~~e~Av~~L~~L~~~  464 (546)
                      .  .+..+.-.....|.++...
T Consensus       290 E--~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         290 E--PNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             C--SCHHHHHHHHHHHHHHTTC
T ss_pred             C--cHHHHHHHHHHHHHHHHhC
Confidence            4  4677788888888888773

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=85.59  E-value=14  Score=34.25  Aligned_cols=237  Identities=12%  Similarity=0.074  Sum_probs=128.7

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHhccChhhhHHhhc-------CChHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009036          227 EQEDYFVQKLKSPQVHEVEEALISLRKLTRSREETRVSLCT-------PRLLLALRSLIISRYTNVQVNAVAALVNLSLE  299 (546)
Q Consensus       227 ~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~l~~-------~g~i~~Lv~lL~s~~~~v~~~A~~~L~nLs~~  299 (546)
                      ..+-.|++.|+.-+.+.-.+....    .+..+..|..+.+       ...+..+..++.++..... .|...|..+...
T Consensus        43 ~kF~~Lv~~lR~~~~e~l~~v~~~----~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~  117 (336)
T d1lsha1          43 AKFLRLTAFLRNVDAGVLQSIWHK----LHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSN  117 (336)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHH----HTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH----HhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcc
Confidence            446678888877776544443332    2344555655543       3356777777766544333 234444444433


Q ss_pred             C-chHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHhhcccc----cchhhHHhhcCChHHHHHhh----ccCCHH
Q 009036          300 K-INKMLIVRSGLVPPIVDVLMA----GSAEAQEHACGAIFSLALD----DQNKTAIGVLGALPPLLHLL----KSDSER  366 (546)
Q Consensus       300 ~-~nk~~i~~~g~l~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~----~~~k~~i~~~g~l~~Lv~lL----~~~~~~  366 (546)
                      . .+..      .+..+..++.+    .++.++..+.-++.+|...    ....    ....++.+...+    ..++.+
T Consensus       118 ~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~----~~~~~~~l~~~l~~~~~~~~~~  187 (336)
T d1lsha1         118 QQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEE  187 (336)
T ss_dssp             CCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHH
T ss_pred             CCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhhcccchH
Confidence            2 2221      34556666654    3677777777777766432    1110    112344444444    345666


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHHhCc---------hHHHHHHHHHHHhhCCcccHHHHHhCCcHHHHH
Q 009036          367 TQHDSALALYHLSLVKSNRTKLVKLGSVNALLGMVNSG---------HMTGRVLLILGNLASCSDGRVAVLDSGGVECLV  437 (546)
Q Consensus       367 ~~~~A~~aL~~Ls~~~~n~~~iv~~Gav~~Lv~lL~~~---------~~~e~al~~L~nLa~~~e~r~~i~~~g~i~~Lv  437 (546)
                      -+..++.+|.|+-.          .+.++.|..++.+.         .++..|+.+|.+++.....       .+...+.
T Consensus       188 ~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~-------~v~~~l~  250 (336)
T d1lsha1         188 EIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVL  250 (336)
T ss_dssp             HHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHH
T ss_pred             HHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcH-------HHHHHHH
Confidence            67788889999743          23567777777542         2778888888887654211       1224566


Q ss_pred             HHHccCCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHCCcHHHHHHHH-hcCCHHHHHHHHHHHHHhhcC
Q 009036          438 GMLRKGTELSESTQESCVSVLYALSHGGLRFKGLAAAAGMAEVLMRME-RVGSEHVKEKAKRMLELMKGR  506 (546)
Q Consensus       438 ~lL~~~~~~s~~~~e~Av~~L~~L~~~~~~~~~~~~~~g~v~~L~~ll-~~~s~~~k~~A~~lL~~L~~~  506 (546)
                      .++.+.. .+.+++-.|..+|.. |.-+..         .+..+...+ ...+..++--....|+.|++.
T Consensus       251 ~i~~n~~-e~~EvRiaA~~~lm~-t~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         251 PIFLNVA-IKSELRIRSCIVFFE-SKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHCTT-SCHHHHHHHHHHHHH-TCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCC-CChHHHHHHHHHHHh-cCCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            6665532 457777777666644 322211         123333333 334566666666666666654

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=1.3  Score=36.40  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHcc------CCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLIIS------RYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~s------~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|+++++.+|..|+..|-.+.+.+ ......+....++..|+.++..      .+..++..++..|...+.
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            357788999999999999999999999999985 6778888889999999999863      478899999999887765


Q ss_pred             C
Q 009036          299 E  299 (546)
Q Consensus       299 ~  299 (546)
                      .
T Consensus       117 ~  117 (143)
T d1mhqa_         117 W  117 (143)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=2.1  Score=35.12  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=63.1

Q ss_pred             chhHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hhhhHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhhc
Q 009036          226 NEQEDYFVQKLKSPQVHEVEEALISLRKLTRSR-EETRVSLCTPRLLLALRSLII------SRYTNVQVNAVAALVNLSL  298 (546)
Q Consensus       226 ~~~i~~lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~l~~~g~i~~Lv~lL~------s~~~~v~~~A~~~L~nLs~  298 (546)
                      ..++..|.++|+++++.++..|+..|-.+.+.+ ......+.+.+++..|+.++.      ..+..++..++..|...+.
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999984 778889999999999999985      3577899999998887654