Citrus Sinensis ID: 009045
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.413 | 0.231 | 0.234 | 2e-05 | |
| Q9FNS4 | 662 | PsbB mRNA maturation fact | N/A | no | 0.401 | 0.330 | 0.197 | 0.0002 | |
| Q3UV71 | 942 | Transmembrane and TPR rep | no | no | 0.523 | 0.303 | 0.217 | 0.0004 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.245 | 0.128 | 0.245 | 0.0006 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.245 | 0.128 | 0.245 | 0.0006 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.245 | 0.128 | 0.245 | 0.0006 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.245 | 0.128 | 0.245 | 0.0006 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | no | no | 0.245 | 0.129 | 0.245 | 0.0007 | |
| O94474 | 1389 | Superkiller protein 3 OS= | no | no | 0.272 | 0.107 | 0.254 | 0.0008 |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 38/264 (14%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P A+ LG +Y+ LG+P +A+ Y+ A + +R + +A + S+
Sbjct: 254 PAFPDAYLNLGNVYKALGRPTEAIMCYQHALQ--MRPNSAMAFGNIASIY---------- 301
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
E +L+ + K+++ D R +N LG L GR+ ++ +
Sbjct: 302 -----------YEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQ 350
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALI-----NYA 317
LA+ PN+ + NLG Y + M ++ F+ + L + A+I NY+
Sbjct: 351 CLALQPNHPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYS 410
Query: 318 ALLLCKYGSVLA----GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373
+ C Y VL A A G + V A + + A+ P A ANLA+
Sbjct: 411 DAISC-YNEVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINFRPTMAEAHANLAS 469
Query: 374 AYYLTGDHRSSGKCLEKAAKLEPN 397
AY +G ++ ++A L P+
Sbjct: 470 AYKDSGHVEAAITSYKQALLLRPD 493
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O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 108/273 (39%), Gaps = 54/273 (19%)
Query: 125 QSGLGTSSSSRE--EKGLVHVARK-MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
+ G G + +R+ +G+ RK +NA+ + LG M +LG+ +A S +E+
Sbjct: 240 EKGQGNFTRARDLWMQGIQRCRRKPQSQNAYLYNALGCMAAQLGRVGEARSWFEEGTRSA 299
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL----------------- 224
E + V + A +L GD ++ + L + L
Sbjct: 300 ----------EGAASVALWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWE 349
Query: 225 ------EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 278
+ L+ L+ + + ++ L+ ++GR++ + + L DP++
Sbjct: 350 RRQGNPQHCLALLRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYM 409
Query: 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338
G+ + G+M+++ + FQ+ + D P+ + + A G
Sbjct: 410 WQAYGVMEAEQGNMDRARQLFQEGVWADPRSPSTVYVFHAW------------------G 451
Query: 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
A QA V A+E AA++ DPK+ WA+
Sbjct: 452 ALEWQAGNVQTARELFKAAVRVDPKSETTWASW 484
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Involved, directly or indirectly, in the processing of the chloroplast encoded psbB mRNA to its mature form, acting via the 5'-UTR of the psbB mRNA. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 50/336 (14%)
Query: 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281
E+ EE + LKES++ A +++L +L + R + + + + + P++ D N
Sbjct: 622 EKTEEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNN 681
Query: 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341
+ SG E++ +Q I +H A++N G + G N+
Sbjct: 682 YAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNL--------GRLYRSLGENSK----- 728
Query: 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401
A+E ALK + A + + L YY TG H+ + + +A L+P+
Sbjct: 729 --------AEEWYRRALKVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQREL 779
Query: 402 RYAVA-----VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 456
R A+A + + K+AE+ + S + +P +E + +A+
Sbjct: 780 RLALAQVLAVMGQTKEAEK--------------ITSHIVSEEPRCLE---CYRLLSAIHS 822
Query: 457 THHEVAAAFETEENELS-KMEECAGAGESAF-----LDQASAVNVAKECLLAALKADPKA 510
A E E L K ++ E F L + + ++ A E AA+ DP
Sbjct: 823 KQEHHGKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQ 882
Query: 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSNL 546
A W N+ ++ G + S+ E+ L + S L
Sbjct: 883 AQAWMNMGGIRHIQGSYVSARAYYERALKLVPDSKL 918
|
Mus musculus (taxid: 10090) |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 92 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 146
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
+ + Y L C + G L + AK C L A++ P
Sbjct: 147 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399
A W+NL + G+ + EKA L+PN +
Sbjct: 191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 225
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Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
++ LG + + G+LQ +I L + P+ D NL A +GDME + + +
Sbjct: 82 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY----- 136
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
+ + Y L C + G L + AK C L A++ P
Sbjct: 137 ------VSALQYNPDLYC----------VRSDLGNLLKALGRLEEAKACYLKAIETQPNF 180
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399
A W+NL + G+ + EKA L+PN +
Sbjct: 181 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 215
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O94474|SKI3_SCHPO Superkiller protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ski3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 258 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH----PAAL 313
L+ S S S L DPN +LG+ Y DM ++ KCFQ D + A
Sbjct: 557 LEDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIHDMVRATKCFQKAFELDASQVEAAEALA 616
Query: 314 INYAALLLCKYGSVLAGAGANTGE----------------GACLDQASAVNVAKECLLAA 357
+A + V++ NT E G A + A +A
Sbjct: 617 KTFAEANEWELVEVISRRVLNTSENDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQSA 676
Query: 358 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406
L+ PK + W+ L AY +G + S+ K +A+ L+P+ +Y +A
Sbjct: 677 LRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIA 725
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Component of the SKI complex involved in 3'-mRNA degradation pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 255540413 | 650 | o-linked n-acetylglucosamine transferase | 0.844 | 0.709 | 0.717 | 0.0 | |
| 225456798 | 658 | PREDICTED: probable UDP-N-acetylglucosam | 0.919 | 0.762 | 0.648 | 1e-180 | |
| 356507317 | 644 | PREDICTED: tetratricopeptide repeat prot | 0.831 | 0.704 | 0.651 | 1e-166 | |
| 224119546 | 665 | predicted protein [Populus trichocarpa] | 0.840 | 0.690 | 0.670 | 1e-163 | |
| 356516597 | 629 | PREDICTED: probable UDP-N-acetylglucosam | 0.800 | 0.694 | 0.654 | 1e-161 | |
| 297793915 | 650 | tetratricopeptide repeat-containing prot | 0.948 | 0.796 | 0.573 | 1e-159 | |
| 51969340 | 649 | unknown protein [Arabidopsis thaliana] | 0.946 | 0.796 | 0.575 | 1e-157 | |
| 449469594 | 647 | PREDICTED: probable UDP-N-acetylglucosam | 0.846 | 0.714 | 0.633 | 1e-156 | |
| 30697806 | 649 | tetratricopeptide repeat (TPR)-containin | 0.946 | 0.796 | 0.573 | 1e-156 | |
| 358348985 | 652 | UDP-N-acetylglucosamine-peptide N-acetyl | 0.752 | 0.630 | 0.678 | 1e-150 |
| >gi|255540413|ref|XP_002511271.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223550386|gb|EEF51873.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/478 (71%), Positives = 388/478 (81%), Gaps = 17/478 (3%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
P+K+E E+S +D SK Q KL +LADLN NPPETD N S +S P+LSRLTN+
Sbjct: 13 TPIKTELNAMETSLDDSSKAAQPPKLVVLADLNANPPETDT--NDSVNLSVPDLSRLTND 70
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+S DK S+ KE D E EGKK+NKLGKCRSR +SK+D++L++G D D DQ G
Sbjct: 71 ES------QDKSSV-ACKEGDTVEFEGKKLNKLGKCRSR-NSKLDASLDYGPDIDADQPG 122
Query: 128 LGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
G SS REEK GLVHVA+KMPKNAHAHF+LGLMYQRLGQP KAV +YEKAEEIL
Sbjct: 123 QGPISS-REEKVSSLKTGLVHVAKKMPKNAHAHFILGLMYQRLGQPQKAVFAYEKAEEIL 181
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
LR EA++ARPE LSLVQIHHAQC+L E+S DNSLDKELE EELEE+LS++KESMQSD RQ
Sbjct: 182 LRSEAEVARPEFLSLVQIHHAQCILLENSSDNSLDKELEAEELEEVLSRMKESMQSDVRQ 241
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A VWNTLGLILLKSGRLQS+ISV SSLLA+D +N DC+GNLGIAY QSGD+E SAKCFQ+
Sbjct: 242 AAVWNTLGLILLKSGRLQSAISVWSSLLAMDTSNYDCLGNLGIAYLQSGDLELSAKCFQE 301
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
LILKDQNHPAA +NYAALLLCKYGSV+AG GAN GEGA + A V+VA ECLLA LK D
Sbjct: 302 LILKDQNHPAAFVNYAALLLCKYGSVVAGPGANAGEGASVYWAEPVHVAMECLLAGLKVD 361
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
PKAAH+WANLANAYYLTGD+RSS KCLEK+AKLEPNCM TRYAVAV RIKDAERSQ+P E
Sbjct: 362 PKAAHLWANLANAYYLTGDYRSSSKCLEKSAKLEPNCMCTRYAVAVQRIKDAERSQDPNE 421
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
QLSWAGNEMASILREG+ V IE PIAWAG A V K HE+AAAFETE NEL+ +EE A
Sbjct: 422 QLSWAGNEMASILREGESVPIEFPIAWAGLAMVHKAQHEIAAAFETERNELADVEERA 479
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456798|ref|XP_002275611.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297733645|emb|CBI14892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 347/535 (64%), Positives = 412/535 (77%), Gaps = 33/535 (6%)
Query: 7 PVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTN 66
P+P+KSE G E+S ++ SK Q SK+ +LADLN +PPETD D S VSAP+L+RLTN
Sbjct: 11 PLPIKSEVGVTENSADESSKRPQISKVVVLADLNVDPPETDDD--DSLHVSAPDLTRLTN 68
Query: 67 EDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQS 126
+DS+ DK S L+SK+ D+ + EGK++NKLGK RSR++ K++ L++G DAD DQ
Sbjct: 69 DDSSQ-----DK-STLVSKDTDMVDGEGKRLNKLGKPRSRVT-KVEYPLDYGADADADQH 121
Query: 127 GLGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
G G + +SREEK GLVHVARKMPKNAHAHF+LGLMYQRLGQP KAVS+YEKA EI
Sbjct: 122 GQG-APTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAAEI 180
Query: 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 240
LLRCE +I RPELLSLVQIHHAQCLL SSGD+S DKELEPEELEEIL K+K+SMQSD R
Sbjct: 181 LLRCEEEIDRPELLSLVQIHHAQCLLLGSSGDHSADKELEPEELEEILLKMKDSMQSDIR 240
Query: 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
QA VWNTLGLILL++GRLQ++ISVLSSLL + P+N DC+GNLGIAY +SG++E + KCFQ
Sbjct: 241 QAAVWNTLGLILLRTGRLQNAISVLSSLLTIAPDNLDCLGNLGIAYLRSGNLELAEKCFQ 300
Query: 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360
+LILKDQNHPAALINYAA+L+CKYGS++AGAGAN+GEGA DQ A NVAKECLLAA+K
Sbjct: 301 NLILKDQNHPAALINYAAVLMCKYGSIIAGAGANSGEGASEDQLIAANVAKECLLAAVKV 360
Query: 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
+PKAAH+WANLANAYYL GD RSS KC EKAAKLEPNCMSTRYAVAV +IKDAER Q+P+
Sbjct: 361 EPKAAHVWANLANAYYLMGDCRSSSKCFEKAAKLEPNCMSTRYAVAVHQIKDAERYQDPS 420
Query: 421 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 480
EQLSWAGNEMASILREGD IE PIAWAG A V K +E+AAAFETE L +MEE
Sbjct: 421 EQLSWAGNEMASILREGDSALIEHPIAWAGLAMVHKIQNEIAAAFETEHKGLMEMEE--- 477
Query: 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535
AV++ K+ A+ DP A W L ++S K L+
Sbjct: 478 ----------RAVHILKQ----AIAEDPDDAVQWHQLGLHNLCVQQFKTSQKYLK 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507317|ref|XP_003522414.1| PREDICTED: tetratricopeptide repeat protein 37-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 307/471 (65%), Positives = 363/471 (77%), Gaps = 17/471 (3%)
Query: 15 GTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNEDSNHSSS 74
G AE S+ + A+KL +LADLN +PPE +A+ S LV P ++ L N++++
Sbjct: 6 GAAEESSNSKAFHHTATKLVVLADLNVDPPEAEAEEVDSSLVPPPPITILGNDENSQ--- 62
Query: 75 HHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSS 134
DK S +SK+ D E E KK+NKL K RSR K DS+L+ D DGDQ G SS
Sbjct: 63 --DKSS--LSKDTDSIEGESKKLNKLSKSRSR---KTDSSLDCVADVDGDQHVQGPPSS- 114
Query: 135 REEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADI 188
REEK GLVHVARKMPKNAHAHF+LGLMYQRL QP KAV +YEKAEEILLR EA+I
Sbjct: 115 REEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEI 174
Query: 189 ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248
RPELLSLVQIHHAQCL+ ESS +NS DKELEP ELEEIL KLK+S++SD RQ VWNTL
Sbjct: 175 DRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILFKLKQSVRSDIRQTAVWNTL 234
Query: 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308
G ILLK+GR+QS+ISVLSSLL++ P N DC+GNLGIAY Q G++E SAKCFQ+LILKDQN
Sbjct: 235 GFILLKTGRMQSAISVLSSLLSIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQN 294
Query: 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368
HPAAL+NYAALLLCKY SV+AG GA EGA DQ A NVAKECLLAA+KAD K+AH+W
Sbjct: 295 HPAALVNYAALLLCKYASVVAGPGAIAAEGALTDQIMAANVAKECLLAAVKADSKSAHVW 354
Query: 369 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGN 428
ANLA A+ ++GDHRSS KCLEKAAKLEPNCMSTRYAVA+ RIK+AERSQ+PTE LS AGN
Sbjct: 355 ANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPTELLSCAGN 414
Query: 429 EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
EMASI+R+ D +E PI W+G A V K HE+AAA+E+E+N L ++EE A
Sbjct: 415 EMASIIRDSDSSLVEIPIVWSGLAMVHKAQHEIAAAYESEQNGLREVEERA 465
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119546|ref|XP_002318101.1| predicted protein [Populus trichocarpa] gi|222858774|gb|EEE96321.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 324/483 (67%), Positives = 381/483 (78%), Gaps = 24/483 (4%)
Query: 10 VKSESGTAES-STEDISKTGQAS-KLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
+K E T ++ STE SK Q KL ILADLN NPPE+D S +S +L++L +E
Sbjct: 15 IKPELVTVDANSTETTSKIPQPPHKLVILADLNANPPESDT--TDSLHLSPSDLTKLKDE 72
Query: 68 DSNHSSSHHDKGSILMSKEMDV-AEVE----GKKINKLGKCRSRISSKMDSALEFGVDAD 122
D L SKE D A VE K +KLGK RSR +SK+D+ L++G D D
Sbjct: 73 -------AQDNKPNLTSKEADNNAAVEVTEGKKSSSKLGKSRSR-NSKLDNPLDYGPDND 124
Query: 123 GDQSGLGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEK 176
DQ G SS REE+ GL+HVA+KMPKNAHAHF+LGLMYQRL QP KA+ +YEK
Sbjct: 125 NDQPNQGPSSY-REERVSSLKTGLLHVAKKMPKNAHAHFILGLMYQRLSQPQKAILAYEK 183
Query: 177 AEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236
AEEILLRCEA++ARP+LLSLVQIHHAQC+L E+SGDNSL+KELE +ELE++L KLKESMQ
Sbjct: 184 AEEILLRCEAEVARPDLLSLVQIHHAQCILLETSGDNSLEKELEGQELEDVLFKLKESMQ 243
Query: 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296
SD RQ VWNTLGLILLKSGR+QS++SVLS+L+AVDPNN DC+ NLGIA+ QSG++E SA
Sbjct: 244 SDIRQVAVWNTLGLILLKSGRVQSAVSVLSALMAVDPNNYDCLANLGIAFLQSGNLELSA 303
Query: 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356
KCFQDLILKDQNHP++L+NYAA+LL KYGSV+AGAGAN G GA +DQA A+NVAKECLLA
Sbjct: 304 KCFQDLILKDQNHPSSLVNYAAVLLSKYGSVVAGAGANAGVGASVDQAEAINVAKECLLA 363
Query: 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416
ALK +PKAAHIWANLANAY++ GDHRS+ KCLEKAAKLEPNCMSTRYAVAV RIKDAERS
Sbjct: 364 ALKLEPKAAHIWANLANAYFMIGDHRSASKCLEKAAKLEPNCMSTRYAVAVHRIKDAERS 423
Query: 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME 476
Q+P+EQLS AGNEMASILREGD V I+ PIAWAG V K HE+AAAF+TE NEL ++E
Sbjct: 424 QDPSEQLSLAGNEMASILREGDSVPIDLPIAWAGLGMVHKAQHEIAAAFDTESNELMEVE 483
Query: 477 ECA 479
E A
Sbjct: 484 ERA 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516597|ref|XP_003526980.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 298/455 (65%), Positives = 357/455 (78%), Gaps = 18/455 (3%)
Query: 31 SKLFILADLNNNPPETDADANTSPLVSAPELSRLTNEDSNHSSSHHDKGSILMSKEMDVA 90
+KL +LADLN + ++S LV P ++ L N++++ DK S +SK+ D
Sbjct: 8 TKLVVLADLNVEAEAEAEEDDSS-LVPPPLITILANDENSQ-----DKSS--LSKDTDSI 59
Query: 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEK------GLVHVA 144
E E KK+NKL K RSR K DS+L+F D DGDQ G SS REEK GLVHVA
Sbjct: 60 EAESKKLNKLSKSRSR---KTDSSLDFVADVDGDQHVQGPPSS-REEKVSSVKTGLVHVA 115
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204
RKMPKNAHAHF+LGLMYQRL QP KAV +YEKAEEILLR EA+I RPELLSLVQIHHAQC
Sbjct: 116 RKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSLVQIHHAQC 175
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
L+ ESS +NS DKELEP+ELEEILSKLKES++SD RQ VWNTLG ILLK+GR++S++SV
Sbjct: 176 LILESSSENSSDKELEPDELEEILSKLKESVKSDIRQTAVWNTLGFILLKTGRVKSAVSV 235
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324
LSSLL++ P N DC+GNLGIAY + G++E SAKCFQ+LILKDQNHPAAL+NYAALLLCKY
Sbjct: 236 LSSLLSIAPENYDCLGNLGIAYLKIGNLELSAKCFQELILKDQNHPAALVNYAALLLCKY 295
Query: 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384
SV+AG GA+ EGA DQ + NVAKECLLAA+KAD K+AH+WANLA A+ ++GDHRSS
Sbjct: 296 ASVVAGPGASAAEGAMTDQIMSANVAKECLLAAVKADSKSAHVWANLACAFSISGDHRSS 355
Query: 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444
KCLEKAAKLEPNCMSTRYAVA RIK+AERSQ+P+E LS AGNEMASI+R+GD +E
Sbjct: 356 SKCLEKAAKLEPNCMSTRYAVAFHRIKEAERSQDPSELLSCAGNEMASIIRDGDSSLVEI 415
Query: 445 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
PIAW+G A V K HE+AAA+E+E+N L ++EE A
Sbjct: 416 PIAWSGLAMVHKAQHEIAAAYESEQNGLREVEERA 450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793915|ref|XP_002864842.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310677|gb|EFH41101.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 319/556 (57%), Positives = 401/556 (72%), Gaps = 38/556 (6%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
+ VK E TA+S T T + KL +LADLN NPPE D D ++S + AP ++RLTNE
Sbjct: 7 IAVKYEPMTADSPT-----TARPPKLVVLADLNFNPPEND-DLDSSIQIPAPPITRLTNE 60
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+S H +G L K+++ EVE KKI+K+GKCRSR SK++ + + G+DADGDQ+
Sbjct: 61 ES------HQEGDTLPCKDVEPGEVEAKKISKVGKCRSR--SKIEPSSDCGLDADGDQAN 112
Query: 128 LGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
G +S REEK GL+HVARKMPKNAHAHF+LGLM+QRLGQP KA+ YEKAEEIL
Sbjct: 113 QGVPAS-REEKISNLKMGLIHVARKMPKNAHAHFILGLMFQRLGQPQKAIPEYEKAEEIL 171
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
L CE +IARPELL LVQIHH QCLL + GD KELE EELEEILSKLK+S++ D RQ
Sbjct: 172 LGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQ 231
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A VWNTLGL+LLK+G L S++SVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQD
Sbjct: 232 AAVWNTLGLMLLKAGCLMSAVSVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQD 291
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
L+LKD NHPAALINYAA LLCK+ S +AGAGAN G DQ + +NVAKECLLAAL++D
Sbjct: 292 LVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADTSEDQKAPMNVAKECLLAALRSD 351
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
PK+AH W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ ++
Sbjct: 352 PKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQNASD 411
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA-- 479
QLSWAGNEMAS++REG+ V I+PPIAWAG A K HE+AAAF + NEL++MEE A
Sbjct: 412 QLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVY 471
Query: 480 GAGESAFLDQASAVN---------------VAKECLLAALKADPKAAHIWANLANAYYLT 524
++ D AV ++++ + AA+ + ++ W+NL + L+
Sbjct: 472 SLKQAVTEDPEDAVRWHQLGLHSLCSQQYKLSQKYIKAAVGRSRECSYAWSNLGISLQLS 531
Query: 525 GDHRSSGKCLEKVLMV 540
+H + + ++ L V
Sbjct: 532 DEHSEAEEVYKRALAV 547
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/556 (57%), Positives = 402/556 (72%), Gaps = 39/556 (7%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
+ VK E T +S + + KL +LADLN NPPETD ++ P+ + P ++RL+NE
Sbjct: 7 IAVKCEPMTVDSPSRPL-------KLVVLADLNFNPPETDDLDSSIPIPTPPPITRLSNE 59
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+S H +G IL KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD +
Sbjct: 60 ES------HQEGGILTCKEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLAN 111
Query: 128 LGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
G +S REEK GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEIL
Sbjct: 112 QGVPAS-REEKISNLKMGLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEIL 170
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
L CE +IARPELL LVQIHH QCLL + GD KELE EELEEILSKLK+S++ D RQ
Sbjct: 171 LGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQ 230
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A VWNTLGL+LLK+GRL S+ISVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQD
Sbjct: 231 AAVWNTLGLMLLKAGRLMSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQD 290
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
L+LKD NHPAALINYAA LLCK+ S +AGAGAN G A DQ + +NVAKECLLAAL++D
Sbjct: 291 LVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSD 350
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
PK+AH W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ ++
Sbjct: 351 PKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASD 410
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA-- 479
QLSWAGNEMAS++REG+ V I+PPIAWAG A K HE+AAAF + NEL++MEE A
Sbjct: 411 QLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVY 470
Query: 480 GAGESAFLDQASAVN---------------VAKECLLAALKADPKAAHIWANLANAYYLT 524
++ D AV ++++ L AA+ + ++ W+NL + L+
Sbjct: 471 SLKQAVTEDPEDAVRWHQLGLHSLCSQQYKLSQKYLKAAVGRSRECSYAWSNLGISLQLS 530
Query: 525 GDHRSSGKCLEKVLMV 540
+H + + ++ L V
Sbjct: 531 DEHSEAEEVYKRALTV 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469594|ref|XP_004152504.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/478 (63%), Positives = 380/478 (79%), Gaps = 16/478 (3%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
+P+K+E G +SS +D SK +SK+ +LADLN +PPE D D +S VSA +SRL+ +
Sbjct: 1 MPLKTEHGAPDSSLDDHSKAVYSSKVVVLADLNVDPPEMDDD--SSVHVSASTISRLSVD 58
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+SNH DK ++ + K+ + EVEG++++K+GKCRSR ++K++ +L+ D DGDQ G
Sbjct: 59 ESNH-----DK-TVEICKDTNAMEVEGRRVSKIGKCRSR-NNKVEYSLDSAADPDGDQHG 111
Query: 128 LGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
G S+S REEK GLVHVARKMPKNAHAHF+LGLMYQRLGQP KAV +YEKAEEIL
Sbjct: 112 QGVSTS-REEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEIL 170
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
L+ + +I RPE LSL+QIHHAQCLL ES GDN+ ++ELE EEL+++ SKLK SMQSD RQ
Sbjct: 171 LQSDVEIHRPEFLSLIQIHHAQCLLLESVGDNTSNEELEQEELDDVCSKLKHSMQSDVRQ 230
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A VWNTLGL+LL +GR++S+I+VLSSLLA+ PNNCDC+GNLGIAY QSG+ME S KCFQ+
Sbjct: 231 AAVWNTLGLLLLTTGRVKSAITVLSSLLAIVPNNCDCLGNLGIAYLQSGNMELSEKCFQE 290
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
LIL DQNH AAL+ YAA LLCKYGS + GAGAN GEG ++ +NVAKECLLAALK D
Sbjct: 291 LILTDQNHLAALVYYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLAALKVD 350
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
PKAAH WANLANAY++TGDHRSS KCLEK AKLEPNCMS RYAVA+ R+KDAERSQ+ +E
Sbjct: 351 PKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSE 410
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
QLSWAGNEMAS++R+GD + I+ +AWAGF+ V K HE+AA F T+++EL + E+ A
Sbjct: 411 QLSWAGNEMASVIRDGDGLTIDHSVAWAGFSMVHKIQHEIAAGFRTDQSELREKEDHA 468
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697806|ref|NP_201125.2| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|51971054|dbj|BAD44219.1| unknown protein [Arabidopsis thaliana] gi|51971080|dbj|BAD44232.1| unknown protein [Arabidopsis thaliana] gi|332010335|gb|AED97718.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/556 (57%), Positives = 401/556 (72%), Gaps = 39/556 (7%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPELSRLTNE 67
+ VK E T +S + + KL +LADLN NPPETD ++ P+ + P ++RL+NE
Sbjct: 7 IAVKCEPMTVDSPSRPL-------KLVVLADLNFNPPETDDLDSSIPIPTPPPITRLSNE 59
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+S H +G IL KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD +
Sbjct: 60 ES------HQEGGILTCKEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLAN 111
Query: 128 LGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181
G +S REEK GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEIL
Sbjct: 112 QGVPAS-REEKISNLKMGLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEIL 170
Query: 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
L CE +IARPELL LVQIHH QCLL + GD KELE EELEEILSKLK+S++ D RQ
Sbjct: 171 LGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQ 230
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A VWNTLGL+LLK+G L S+ISVLSSLLA+ P+N DC+ NLG+AY QSGDME SAKCFQD
Sbjct: 231 AAVWNTLGLMLLKAGCLMSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQD 290
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
L+LKD NHPAALINYAA LLCK+ S +AGAGAN G A DQ + +NVAKECLLAAL++D
Sbjct: 291 LVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRSD 350
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
PK+AH W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ ++
Sbjct: 351 PKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDASD 410
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA-- 479
QLSWAGNEMAS++REG+ V I+PPIAWAG A K HE+AAAF + NEL++MEE A
Sbjct: 411 QLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERAVY 470
Query: 480 GAGESAFLDQASAVN---------------VAKECLLAALKADPKAAHIWANLANAYYLT 524
++ D AV ++++ L AA+ + ++ W+NL + L+
Sbjct: 471 SLKQAVTEDPEDAVRWHQLGLHSLCSQQYKLSQKYLKAAVGRSRECSYAWSNLGISLQLS 530
Query: 525 GDHRSSGKCLEKVLMV 540
+H + + ++ L V
Sbjct: 531 DEHSEAEEVYKRALTV 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348985|ref|XP_003638521.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] gi|355504456|gb|AES85659.1| UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 289/426 (67%), Positives = 344/426 (80%), Gaps = 15/426 (3%)
Query: 60 ELSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGV 119
E++RL N++++ S L+SK+ + E EGK +NKLGKCRS+ SK DS+++ G
Sbjct: 57 EITRLINDENSQDKS-------LLSKDTNSNEGEGKLLNKLGKCRSK-PSKTDSSIDCGA 108
Query: 120 DADGDQSGLGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSS 173
DADGDQ G + S+REEK GLVHVARKMPKNAHAHF+LGLMYQRL QP KA+ +
Sbjct: 109 DADGDQHVQG-APSAREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKAILA 167
Query: 174 YEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 233
YEKAEEILLR E +I R E L+LVQIHHAQCL+ ESS +NS D+ELEP ELEEI+SKLKE
Sbjct: 168 YEKAEEILLRPEVEIDRAEFLALVQIHHAQCLIIESSSENSSDQELEPHELEEIISKLKE 227
Query: 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293
S QSD RQA VWNTLG ILLK+GR+QS+ISVLSSLLA+ P N DC+GNLGIAY Q GD+E
Sbjct: 228 STQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAISPENYDCLGNLGIAYLQIGDLE 287
Query: 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353
SAKCFQ+LILKDQNHPAAL+NYAALLLCK SV+AGAGAN EGA +Q+ A NVAKEC
Sbjct: 288 LSAKCFQELILKDQNHPAALVNYAALLLCKNASVVAGAGANAAEGASAEQSMAANVAKEC 347
Query: 354 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 413
LLAA+KAD K+AHIWANLA A+ +TG+HR S KCLEKAAKLEPNCMSTRYAVA RIK+A
Sbjct: 348 LLAAIKADGKSAHIWANLAYAFSITGNHRISSKCLEKAAKLEPNCMSTRYAVASHRIKEA 407
Query: 414 ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473
ERSQ+P+E LS AGNEMASI+R+GD +E PIAWAG A V K HE++AA+E+E++ L
Sbjct: 408 ERSQDPSELLSSAGNEMASIIRDGDSSLVELPIAWAGLAMVHKAQHEISAAYESEQDGLK 467
Query: 474 KMEECA 479
++EECA
Sbjct: 468 EIEECA 473
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| TAIR|locus:2162027 | 649 | AT5G63200 "AT5G63200" [Arabido | 0.833 | 0.701 | 0.565 | 2.5e-136 |
| TAIR|locus:2162027 AT5G63200 "AT5G63200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 271/479 (56%), Positives = 330/479 (68%)
Query: 8 VPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTS-PLVSAPELSRLTN 66
+ VK E T +S + + KL +LADLN NPPETD D ++S P+ + P ++RL+N
Sbjct: 7 IAVKCEPMTVDSPSRPL-------KLVVLADLNFNPPETD-DLDSSIPIPTPPPITRLSN 58
Query: 67 EDSNXXXXXXDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQS 126
E+S+ +G IL KE++ EVE KKI+K+GKCRSR SK++S+ + GVDADGD +
Sbjct: 59 EESH------QEGGILTCKEVEPGEVEAKKISKVGKCRSR--SKIESSSDCGVDADGDLA 110
Query: 127 GLGTSSSSREEK------GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
G +S REEK GL+HVARKMPKNAHAHF+LGLM+QRLGQ KA+ YEKAEEI
Sbjct: 111 NQGVPAS-REEKISNLKMGLIHVARKMPKNAHAHFILGLMFQRLGQSQKAIPEYEKAEEI 169
Query: 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNXXXXXXXXXXXXXXXXXXXXXMQSDTR 240
LL CE +IARPELL LVQIHH QCLL + GD ++ D R
Sbjct: 170 LLGCEPEIARPELLLLVQIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVR 229
Query: 241 QAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
QA VWNTLGL+LLK A+ P+N DC+ NLG+AY QSGDME SAKCFQ
Sbjct: 230 QAAVWNTLGLMLLKAGCLMSAISVLSSLLALVPDNYDCLANLGVAYLQSGDMELSAKCFQ 289
Query: 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXX 360
DL+LKD NHPAALINYAA LLCK+ S +AGAGAN G A DQ + +NVAKEC
Sbjct: 290 DLVLKDHNHPAALINYAAELLCKHSSTVAGAGANGGADASEDQKAPMNVAKECLLAALRS 349
Query: 361 XXXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
H W NLAN+YY+ GDHRSS KCLEKAAKL+PNCM+TR+AVAV RIKDAERSQ+ +
Sbjct: 350 DPKSAHAWVNLANSYYMMGDHRSSSKCLEKAAKLDPNCMATRFAVAVQRIKDAERSQDAS 409
Query: 421 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
+QLSWAGNEMAS++REG+ V I+PPIAWAG A K HE+AAAF + NEL++MEE A
Sbjct: 410 DQLSWAGNEMASVIREGESVPIDPPIAWAGLAMAHKAQHEIAAAFVADRNELTEMEERA 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.003 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 81/422 (19%), Positives = 146/422 (34%), Gaps = 83/422 (19%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+NA A LG+ G P +A++ E A + + ++ R +LL + + +
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETA----AQLDPELGRADLL--LILSY------ 441
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
L + ++ L+ K+ + A + N LG I L G L +
Sbjct: 442 -----------LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK---- 323
L+++P+ NL Q G+ + + + F+ ++ D + A++ A L L
Sbjct: 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550
Query: 324 --YGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAHIWAN 370
+ A N E A+ + E A A P + W
Sbjct: 551 EAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE----AADAAPDSPEAWLM 606
Query: 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ-------- 422
L A GD + +K L+P+ A+A+ + DA + +
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPD-----SALALLLLADAYAVMKNYAKAITSLKRA 661
Query: 423 LSWAGNEMASILR----EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478
L + + + + E A ++QK H + A FE E
Sbjct: 662 LELKPDNTEAQIGLAQLLLAAKRTES--AKKIAKSLQKQHPKAALGFELE---------- 709
Query: 479 AGAGESAFL--DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536
G+ D +A+ ++ ALK P + + L A +G+ + K LE
Sbjct: 710 ---GDLYLRQKDYPAAIQAYRK----ALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEA 761
Query: 537 VL 538
L
Sbjct: 762 WL 763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
NLG Y++ GD +++ + ++ + D ++ A N AA G+
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY------------YKLGK--- 49
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
++A E AL+ DP A + NL AYY G + + + EKA +L+PN
Sbjct: 50 YEEA------LEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303
LG + K G ++ L +DP+N D NL AY++ G E++ + ++ +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 304 LKDQNHPAALINYAALLLCK 323
D ++ A N
Sbjct: 62 ELDPDNAKAYYNLGLAYYKL 81
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 38/283 (13%)
Query: 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI----------LLRCE-----ADIAR 190
K P NA H LLG +Y G KA ++EKA I L R + D A
Sbjct: 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
Query: 191 PELLSLVQI--HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248
++ I + + +L + E EE ++ L+++ + + ++ L
Sbjct: 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNE------EEAVAWLEKAAELNPQEIEPALAL 573
Query: 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308
L G+L+ ++++L+ P++ + LG A +GD+ ++ F+ L+ +
Sbjct: 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633
Query: 309 HPAALI----------NYAALLLCKYGSVLAGAGANT----GEGACLDQASAVNVAKECL 354
AL+ NYA + L NT G L A AK+
Sbjct: 634 SALALLLLADAYAVMKNYAKAIT-SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
Query: 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ K PKAA + + Y D+ ++ + KA K P+
Sbjct: 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 56/284 (19%), Positives = 103/284 (36%), Gaps = 40/284 (14%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI----------LLRCEADIARPE-LLSL 196
P +A A LL Y + KA++S ++A E+ L + R E +
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 197 VQIHHAQCLLPESSGDNSL--DKELEPEELEEILSKLKESMQ-SDTRQAVVWNTLGLILL 253
+ Q P+++ L D L ++ + +++++ + + Q + L LL
Sbjct: 692 AKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI--KLHRALL 747
Query: 254 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313
SG ++ L + L PN+ L Y D +++ K +Q ++ K ++ L
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807
Query: 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373
N A L L A E ALK P I L
Sbjct: 808 NNLAWLYLELKDP----------------------RALEYAERALKLAPNIPAILDTLGW 845
Query: 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
G+ + L KA + P + RY +A++ + +++
Sbjct: 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 55/275 (20%), Positives = 99/275 (36%), Gaps = 32/275 (11%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH------H 201
P N A L G + LG A+++Y KA + A + + + H
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249
Query: 202 AQCLL---PESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 256
A LL P S + L + + + E+ L+++++S G + G
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309
Query: 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316
L+ + L+ +L PN+ L + G ++++ + D + PAAL
Sbjct: 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL--- 366
Query: 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376
+LL G G L +A+ + DP+ A L +
Sbjct: 367 -SLL----GEAYLALGDFEKAAEYLAKATEL-------------DPENAAARTQLGISKL 408
Query: 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411
GD + LE AA+L+P + +S ++
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281
+ +E L +++++ D A + L K G+ + ++ L +DP+N N
Sbjct: 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN 73
Query: 282 LGIAYFQSGDMEQSAKCFQ 300
LG+AY++ G E++ + ++
Sbjct: 74 LGLAYYKLGKYEEALEAYE 92
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 1e-05
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 13/173 (7%)
Query: 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209
L LG L+A+ YE+A E+L + + + L
Sbjct: 87 ELELLPNLAEALLNLGLLLEALGKYEEALELLEK------------ALALDPDPDLAEAL 134
Query: 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
+L + + EE E+ K E A LG +L GR + ++ +L L
Sbjct: 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194
Query: 270 AVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
++P++ + + NLG+ Y + G E++ + ++ + D ++ AL N A LLL
Sbjct: 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247
|
Length = 291 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 35/195 (17%), Positives = 55/195 (28%), Gaps = 27/195 (13%)
Query: 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314
G SS++VL P + + + G ++G+ ++ + A
Sbjct: 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW- 137
Query: 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
GA LDQ + A+ AL+ P I NL +
Sbjct: 138 --------------------NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177
Query: 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA-----VSRIKDAERSQEPTEQLSWAGNE 429
L GD + L A R +A ++AE E LS
Sbjct: 178 LLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-ELLSEQAAN 236
Query: 430 MASILREGDPVQIEP 444
+ LR
Sbjct: 237 NVAALRAAASQSGAW 251
|
Length = 257 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQ 203
+K P +A A FLLG +Y LG A KA L + P L + + Q
Sbjct: 50 QKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS--LGYPKNQVLPLLARAYLLQGKFQ 107
Query: 204 CLLPESSGDNSLDKELEPEELE-----EILSKLKESMQSDTRQAVVWNT------LGL-- 250
+L E G LD E E L + E Q QA+ + LGL
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQ 167
Query: 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310
+ L R + +++ +L DP N D + G G++E + ++ I N+
Sbjct: 168 LALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI 227
Query: 311 AALINYAALLL 321
A L+ A +L+
Sbjct: 228 AVLLALATILI 238
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408
A E AL+ DP A + NLA AYY G + + + EKA +L+P+ Y + ++
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 71/316 (22%), Positives = 109/316 (34%), Gaps = 45/316 (14%)
Query: 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306
L I L+ GR+ +I+ LS L +DP++ + LG AY GD E++A+ D
Sbjct: 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
Query: 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN---VAKECLLA------- 356
+ AA L + K L+ + L+ A+ ++ + LL
Sbjct: 394 PENAAA---RTQLGISK----LSQGDPSEAIAD-LETAAQLDPELGRADLLLILSYLRSG 445
Query: 357 ----ALKA-------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405
AL A P A + L Y GD + + EKA +EP+ +
Sbjct: 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505
Query: 406 AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 465
A R A +L DP + +A AG E A
Sbjct: 506 A--------RIDIQEGNPDDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWL 556
Query: 466 ETEENELSKMEECAGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYY 522
E + E A A +L + A+ + E A A P + W L A
Sbjct: 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE----AADAAPDSPEAWLMLGRAQL 612
Query: 523 LTGDHRSSGKCLEKVL 538
GD + +K+L
Sbjct: 613 AAGDLNKAVSSFKKLL 628
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296
A LG L K G +I L +DP+N + NL +AY + G + A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEA 57
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 21/168 (12%)
Query: 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307
L L L+ G L+ + L L DP++ L + Y Q G++E++ F+ + +
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 308 NHPAALINY------------------AALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349
N+ L NY A+ Y A + G C +A +
Sbjct: 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP---ARSLENAGLCALKAGDFDK 153
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
A++ L AL+ DP+ LA YYL G ++ + LE+ +
Sbjct: 154 AEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (95), Expect = 8e-04
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 22/206 (10%)
Query: 223 ELEEILSKLKESMQSD--TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDC 278
EL E L L+E+++ + A + L L LLK GRL+ ++ +L L + PN +
Sbjct: 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA 97
Query: 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG------------- 325
+ NLG+ G E++ + + + D + A A L + G
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 326 ----SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYLTGD 380
+ A A GA L+ A E L ALK +P A NL Y G
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 381 HRSSGKCLEKAAKLEPNCMSTRYAVA 406
+ + + EKA +L+P+ Y +A
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLA 243
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 496 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
A E AL+ DP A + NLA AYY G + + + EK L
Sbjct: 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEP 396
A E AL+ DP A + NLA AY G + LEKA +L+P
Sbjct: 22 AIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
NLG A F+ GD +++ + ++ + D ++ A N A L
Sbjct: 8 NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYL 48
|
Length = 69 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 141 VHVARKMPKNAHAHFLLG---LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 197
+AR + + + + + + Y +A + L + D A L L+
Sbjct: 274 FQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLI 333
Query: 198 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR 257
E +GD + LE + +E + +LK+++ D ++ L LLK G+
Sbjct: 334 AAQPDNPYYLELAGD--IL--LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389
Query: 258 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294
Q +I +L+ L DP + + L AY + G+ +
Sbjct: 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426
|
Length = 484 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308
GL + SG+ +I L + +P + + +G LG AY Q GD ++ F+ + D +
Sbjct: 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335
Query: 309 HP 310
Sbjct: 336 SS 337
|
Length = 1157 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.98 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.89 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.89 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.87 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.85 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.84 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.84 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.83 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.8 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.79 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.71 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.61 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.5 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.4 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.24 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.23 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.2 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.14 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.13 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.11 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.1 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.06 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.05 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.01 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.94 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.8 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.8 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.6 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.58 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.57 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.55 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.48 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.48 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.44 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.39 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.24 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.23 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.22 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.17 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.12 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.98 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.9 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.89 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.86 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.82 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.74 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.61 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.58 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.53 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.49 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.4 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.38 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.38 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.35 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.33 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.28 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.23 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.2 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.19 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.15 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.06 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.06 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.97 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.94 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.92 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.87 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.78 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.75 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.69 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.68 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.66 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.57 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.45 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.36 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.31 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.24 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.2 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.12 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.08 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.05 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.01 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.0 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.89 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.86 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.83 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.8 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.55 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.46 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.46 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.4 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.29 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.25 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.23 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.22 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.17 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 95.14 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.14 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.95 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 94.51 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.51 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 94.44 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.21 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.97 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.85 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.73 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.63 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.4 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.38 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.35 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.29 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.28 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.18 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 93.16 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.08 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 92.8 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.49 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.06 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 92.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.92 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.86 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.84 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.84 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.63 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.02 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.01 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 90.17 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.12 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.04 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.96 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 89.11 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 89.03 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.9 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.5 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.18 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.06 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.79 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 87.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.74 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.38 | |
| PF12854 | 34 | PPR_1: PPR repeat | 86.35 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 86.15 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.43 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 84.8 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.79 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 84.63 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.47 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 84.42 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.32 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 83.93 | |
| PF12854 | 34 | PPR_1: PPR repeat | 83.74 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 83.71 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.66 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 83.58 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 83.5 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.35 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 83.14 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 82.77 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 82.77 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 82.45 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 81.42 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 81.41 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 80.21 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=331.47 Aligned_cols=355 Identities=19% Similarity=0.203 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|.. .-++..+|.++..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l------------~ca~s~lgnLlka~--- 197 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL------------YCARSDLGNLLKAE--- 197 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch------------hhhhcchhHHHHhh---
Confidence 556666666666666666666666666666666666666666666665432 12222333333333
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
|++.+|..+|.++++.+|..+.+|.+||.++..+|+...|+..|+++++++|...++|++||.+|...+.++
T Consensus 198 --------Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 198 --------GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred --------cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 333666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
.|+.+|.+++.+.|++..++-+++.+|+ .+|..+-||..|++++++.|..+.++.++|.
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYy---------------------eqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLACIYY---------------------EQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEEEEe---------------------ccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 6666666666666666666665555555 6677777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|+..+|..+|.+++.+.|+.+++..+++.....+.. .. ...........+.|+...+..++|.
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e-----------~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IE-----------EATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-ch-----------HHHHHHHHHHhhChhhhhhhhhHHH
Confidence 77777777777777777777777777777777664433211 11 1112222233345566677888888
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
+|..+|++++|+..|+.++. |.-.+++.++|.+|..+|+.+.|+.+|.+++..+|..++++.+||.+|...|+..+|+
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 88888888888888888554 6666788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhccc
Q 009045 532 KCLEKVLMVYCSS 544 (546)
Q Consensus 532 ~~~~~al~~~~~~ 544 (546)
..|+.++.+-++.
T Consensus 477 ~sY~~aLklkPDf 489 (966)
T KOG4626|consen 477 QSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHccCCCC
Confidence 8888888876654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=319.14 Aligned_cols=392 Identities=17% Similarity=0.182 Sum_probs=346.1
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-++.+...|+...++ ..+..+++..|+...+|..+|.. +...|-.+|.++++++|....++..+|.++-..|+.
T Consensus 122 ~aN~~kerg~~~~al-~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 122 LANILKERGQLQDAL-ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHHHhchHHHHH-HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 456677888888887 88999999999999998887776 568888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
.+|..+|.+|++..|. + +.+|.++|-+ +..+|+...|+..|+++++++|+..++|++
T Consensus 201 ~ea~~cYlkAi~~qp~---------f---AiawsnLg~~-----------f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPC---------F---AIAWSNLGCV-----------FNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred chhHHHHHHHHhhCCc---------e---eeeehhcchH-----------HhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 9999999999998542 1 2344444444 456677799999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
||.+|...+.|++|+.+|.+++.+.|+++.++.++|.+|+.+|..+-|+..|++++.+.|+.++++.+++..+.
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk------ 331 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK------ 331 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..|+..+|..+|.+++.+.|..+++..+||.+|..+|.+++|...|+++++..|....++.+++.
T Consensus 332 ---------------d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 332 ---------------DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred ---------------hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHH
Q 009045 408 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESA 485 (546)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~ 485 (546)
..-.+.. +.. ..........+.|..+.++.++|..|..+|+...|+..|.+++. |.-.+++.+||.
T Consensus 397 i~kqqgn--------l~~----Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 397 IYKQQGN--------LDD----AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHhccc--------HHH----HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 5443311 122 22334455566788999999999999999999999999999665 666688999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+|...|+..+||..|+.++++.|+.++++.++..++.-..++..=-+.+++..++.
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~siv 520 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIV 520 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977777666555555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=293.47 Aligned_cols=381 Identities=16% Similarity=0.129 Sum_probs=306.6
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..|..+++.|++..++ ..|.++|...|+ ...+..+|.+ +..+|.+.+.++++.+|++..+++.+|.+|..+|+
T Consensus 132 ~~G~~~~~~~~~~~Ai-~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAI-KLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4688899999999998 999999999996 3444444443 55889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhc-------------------------cchhhHHHHHHHhhcc-------------cccc
Q 009045 167 PLKAVSSYEKAEEILLRCEADI-------------------------ARPELLSLVQIHHAQC-------------LLPE 208 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~-------------------------~~~~~~~~~~~~~~~~-------------~~~~ 208 (546)
+++|+..|..++..++...... ..+....... +.... ....
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhccccccc
Confidence 9999999987766533211000 0000000000 00000 0000
Q ss_pred ccCCCcccc------ccChhhHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHH
Q 009045 209 SSGDNSLDK------ELEPEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI 279 (546)
Q Consensus 209 ~~g~~~~~~------~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 279 (546)
..+...... ....+++++|+..|++++.. .|....++..+|.++..+|++++|+..|++++.++|++..+|
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 368 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 011110000 01235789999999999976 477888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..+|.++..+|++++|+..|+++++.+|++..+++.+|.++. ..|++++|+.+|+++++
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF---------------------IKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 439 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (546)
++|++...+..+|.++..+|++++|+..|++++...|+++
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~---------------------------------------- 467 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP---------------------------------------- 467 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------------------------------------
Confidence 9999999999999999999999999999999999988764
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh--h------HHhhHHHHH-HHhccHHHHHHHHHHHHHhCCCC
Q 009045 440 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE--C------AGAGESAFL-DQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~------~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
.++..+|.++...|++++|+..|.+++.-.+. . .+++.+..+ ...|++++|+..|+++++++|++
T Consensus 468 ------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 468 ------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45666788888899999999999996653221 1 233333334 34799999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++..+|.++...|++++|+.+|++++++..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998865
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=291.93 Aligned_cols=408 Identities=22% Similarity=0.197 Sum_probs=296.7
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 168 (546)
+..+...|+...++ ..|.+++...|+....+...+.+ +...|.+.|++++..+|.+..++..++.++...|+++
T Consensus 472 ~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 472 GAIYLGKGDLAKAR-EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhCCCHHHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 33444444444444 55555555555544444333332 2344555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..|+++++.+|.+. ..+..++.. +...|++++|+..+++++...|.+..+|..+
T Consensus 551 ~A~~~~~~~~~~~~~~~------------~~~~~l~~~-----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 551 EAVAWLEKAAELNPQEI------------EPALALAQY-----------YLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred HHHHHHHHHHHhCccch------------hHHHHHHHH-----------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 55555555555543220 111222222 3456777999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.++...+....
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888865433221
Q ss_pred c-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 329 A-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 329 ~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
+ ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++.+
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 23334457788888888888888888888888876 677788888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--
Q 009045 396 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS-- 473 (546)
Q Consensus 396 p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-- 473 (546)
|++...+..++...... .....+...+...+. ..|.++.++..++.++...|+ .+|+..+.+.+.
T Consensus 767 ~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQ--------KDYDKAIKHYRTVVK----KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CCCHHHHHHHHHHHHHC--------cCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 88887777776654432 112223333333332 346678888899999999888 788888888544
Q ss_pred chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 474 KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 474 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.+...+..+|.++...|++++|+.+|+++++.+|.++.+++.++.++...|++++|++.++++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 555667778888999999999999999999999999999999999999999999999999988763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=287.25 Aligned_cols=440 Identities=14% Similarity=0.131 Sum_probs=315.2
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcc-c---ccccCCC--CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADG-D---QSGLGTS--SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~-~---~~~~g~~--~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.+..+...|+...++ ..|.+++...|.... + +...... +..+|.+.|+++++.+|.++.++..+|.++...|+
T Consensus 118 ~A~ll~~~g~~~eA~-~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEAL-ASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHH-HHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 455677888888887 899999998887642 1 1111111 44789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchh-----------ccchhhHHHHHH--------------Hhhccc----------cccccC
Q 009045 167 PLKAVSSYEKAEEILLRCEAD-----------IARPELLSLVQI--------------HHAQCL----------LPESSG 211 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~-----------~~~~~~~~~~~~--------------~~~~~~----------~~~~~g 211 (546)
+++|+..+++++...+..... ...+........ ...+.. ....+|
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999987643211000 000000000000 000000 000112
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----------------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------- 275 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 275 (546)
.. ++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|++
T Consensus 277 ~~----~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 277 LA----AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HH----HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 22 4567778888888888888888888888888888888888888888888888777654
Q ss_pred --------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 276 --------------------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 276 --------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
..++..+|.++...|++++|++.|+++++++|++..++..++.++...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 334455666666666666666666666666666666665555554321
Q ss_pred hCcccc----------------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 324 YGSVLA----------------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 324 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
....+ ....+..+|..+...|++++|+..|+++++++|+++.+++.+|.+|...|++
T Consensus 433 -~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 -SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred -CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 00000 0112234677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----HhhhccC---------chhHHHH------------------HHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAVAVSRIK-----DAERSQE---------PTEQLSW------------------AGNE 429 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l~~~~l~-----~~~~~~~---------~~~~~~~------------------~~~~ 429 (546)
++|+..|+++++.+|+++..++.++..... ++..... ....+.. ....
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999888776543211 0000000 0000000 0011
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
....+. ..|.++..+..+|.++...|++++|+..|.+.+ .|.+..++++++.+|...|++++|+..|+++++..
T Consensus 592 A~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 592 AEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 122222 356677889999999999999999999999965 47777899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 508 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
|+++.++..+|.++...|++++|+++|++++...+
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999998764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=284.81 Aligned_cols=429 Identities=19% Similarity=0.169 Sum_probs=284.3
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..+..+...|+...++ ..+.+++...|.....+...|.+ +..+|.+.|++++..+|++..++..+|.++...|+
T Consensus 334 ~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAI-ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3566677888888876 78888888888766655555444 45788888888888889888888899999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHh--------------------hccccccccCCCccccccChhhHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--------------------AQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+++|+..|+++++..|+..... ..++..+. .....+..+|.. +...|++++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~ 483 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRAD-----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI----YLGKGDLAK 483 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhH-----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH----HHhCCCHHH
Confidence 9999999998888766432110 00000000 000111111222 445566678
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888777777777777788888778888888888888877777777777777887777888888888888877777
Q ss_pred CCCHHHHHHHHHHHHHhhCcccc-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 307 QNHPAALINYAALLLCKYGSVLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
|.+...+..++.++...+....+ ....+..+|.++...|++++|+..|+++++..|.++.++..+|.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 77777777777766544322111 23345557777778888888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+..|+++++.+|++...+..++....... ....+. ..+.......+..+..+..+|.
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~----~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK--------RTESAK----KIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHH----HHHHHHHhhCcCChHHHHHHHH
Confidence 8888888888888888888888887777666655433211 011111 1111111223445556666666
Q ss_pred HHHhcccHHHHHHHHHhhccchh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 454 VQKTHHEVAAAFETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
++...|++++|+..|.+.+...+ ...++.++.++...|++++|+..++++++..|++..+++.+|.+|...|++++|+.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 66667777777666666443211 14455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhc
Q 009045 533 CLEKVLMVYC 542 (546)
Q Consensus 533 ~~~~al~~~~ 542 (546)
+|+++++..+
T Consensus 792 ~~~~~~~~~p 801 (899)
T TIGR02917 792 HYRTVVKKAP 801 (899)
T ss_pred HHHHHHHhCC
Confidence 6666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-30 Score=261.73 Aligned_cols=323 Identities=11% Similarity=0.016 Sum_probs=236.0
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccc
Q 009045 126 SGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 205 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 205 (546)
+..|.. .+|...++.++...|.++.+++.+|.+....|++++|+..|+++++.+|++. .++..++.
T Consensus 53 ~~~g~~--~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------------~a~~~la~ 118 (656)
T PRK15174 53 LRKDET--DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------------EDVLLVAS 118 (656)
T ss_pred HhcCCc--chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHH
Confidence 445555 7788888888888999999999999888889999999999999988877641 23444444
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
++ ...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++..++..++ .
T Consensus 119 ~l-----------~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~ 186 (656)
T PRK15174 119 VL-----------LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-S 186 (656)
T ss_pred HH-----------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-H
Confidence 44 34455688999999999888888888888898888999999999988888888888888777654 4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+...|++++|+..++++++.+|... .....++.++. ..|++++|+..|++++..+|++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~---------------------~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC---------------------AVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCC
Confidence 7788899999988888888765332 22333344444 7888899999999999888888
Q ss_pred HHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRS----SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
+.++..+|.++...|++++ |+..|++++..+|++..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--------------------------------------- 286 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--------------------------------------- 286 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH---------------------------------------
Confidence 8888889999998888885 788888888888876543
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
+..+|.++...|++++|+..+++.+. +....++..+|.++...|++++|+..|++++..+|++...+..+|
T Consensus 287 -------~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 287 -------VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 44455555566666666666655332 444455556666666666666666666666666666555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.++...|++++|+..|+++++..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-30 Score=278.70 Aligned_cols=366 Identities=15% Similarity=0.111 Sum_probs=290.6
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
+...|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|+................+.. ..+|
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~-----~~~g 358 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL-----IQQG 358 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH-----HHHH
Confidence 44889999999999999999999999999999999999999999999998765321100001111111111 1112
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA------ 285 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------ 285 (546)
.. ++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 359 ~~----~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 359 DA----ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HH----HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 22 45677889999999999999999999999999999999999999999999999999988776655544
Q ss_pred ------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 286 ------------------------------------YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 286 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
+...|++++|+..|+++++++|+++.+++.++.++.
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-------- 506 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-------- 506 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------
Confidence 446799999999999999999999999999888887
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--------------- 394 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 394 (546)
..|++++|+..|+++++.+|+++..++.++..+...+++++|+..++++...
T Consensus 507 -------------~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 507 -------------QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred -------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 8999999999999999999999999999998888889998888887764322
Q ss_pred -------------------------CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 395 -------------------------EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 395 -------------------------~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
.|.++..+..++..... ...+..+...+...+ ...|+++.++.
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~--------~g~~~~A~~~y~~al----~~~P~~~~a~~ 641 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ--------RGDYAAARAAYQRVL----TREPGNADARL 641 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH--------cCCHHHHHHHHHHHH----HhCCCCHHHHH
Confidence 23333333222221111 112223333333333 34678899999
Q ss_pred HHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q 009045 450 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA------HIWANLANAY 521 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~ 521 (546)
.++.++...|++++|+..+...+. +.....+..+|.++...|++++|+..|++++...|+++ .++..+|.++
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 999999999999999999998665 45567788899999999999999999999999876543 4667789999
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009045 522 YLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 522 ~~~g~~~~A~~~~~~al~ 539 (546)
...|++++|+..|++++.
T Consensus 722 ~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 722 AQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999999985
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-29 Score=255.12 Aligned_cols=345 Identities=12% Similarity=0.005 Sum_probs=294.4
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-...+.+.|+...++ ..+...+...|++..+++..|.. +...|...|++++..+|+++.++..+|.++...|++
T Consensus 48 ~~~~~~~~g~~~~A~-~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGL-TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhH-HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 445577778888887 88899999999999999988876 678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
++|+..|++++++.|++ ...+..++.++. ..|++++|+..+++++...|+++.++..
T Consensus 127 ~~Ai~~l~~Al~l~P~~------------~~a~~~la~~l~-----------~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 127 ATVADLAEQAWLAFSGN------------SQIFALHLRTLV-----------LMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred HHHHHHHHHHHHhCCCc------------HHHHHHHHHHHH-----------HCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999997654 233444555444 4455699999999999999999988877
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
++ .+...|++++|+..+++++..+| ........++.++...|++++|+..|++++..+|++...+..+|.++.
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~----- 257 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY----- 257 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----
Confidence 65 48899999999999999999876 344455667889999999999999999999999999999999998888
Q ss_pred cccccccccccchHHHhhcCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNV----AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++ |+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|++.
T Consensus 258 ----------------~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~--- 318 (656)
T PRK15174 258 ----------------QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP--- 318 (656)
T ss_pred ----------------HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---
Confidence 7888885 89999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHH
Q 009045 403 YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAG 480 (546)
Q Consensus 403 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~ 480 (546)
.++..+|.++...|++++|+..+.+.+. +.....+
T Consensus 319 -------------------------------------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 319 -------------------------------------------YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 3456677888999999999999998665 3333445
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 5678899999999999999999999999875 234456666666666654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-29 Score=257.75 Aligned_cols=339 Identities=15% Similarity=0.094 Sum_probs=270.0
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHH-----------------------
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVA----------------------- 144 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l----------------------- 144 (546)
.+.++.++|+...++ ..+.++|+..|+...+++.+|.+ +...|...|..+.
T Consensus 166 ~a~~~~~l~~~~~Ai-~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 244 (615)
T TIGR00990 166 RAACHNALGDWEKVV-EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAE 244 (615)
T ss_pred HHHHHHHhCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 455677788888887 89999999999998888887766 3445544443332
Q ss_pred -------HhCCCCHHHHHHHHHHH---------------------------------H---HcCChhHHHHHHHHHHHHh
Q 009045 145 -------RKMPKNAHAHFLLGLMY---------------------------------Q---RLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 145 -------~~~p~~~~~~~~lg~~~---------------------------------~---~~g~~~~A~~~~~~al~~~ 181 (546)
...|.+...+..+|..+ . ..++|++|+..|+++++..
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 245 SKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 23333322222222221 1 2357899999999999863
Q ss_pred cccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHH
Q 009045 182 LRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 261 (546)
Q Consensus 182 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 261 (546)
.. .| ..+.++..+|.++. ..|++++|+..|+++++.+|.+..++..+|.++...|++++|
T Consensus 325 ~~------~~---~~a~a~~~lg~~~~-----------~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 325 KL------GE---KEAIALNLRGTFKC-----------LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred CC------Ch---hhHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 11 12 22345556666554 455669999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
+..|+++++.+|+++.+++.+|.+++..|++++|+.+|++++.++|++...+..+|.++.
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~-------------------- 444 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY-------------------- 444 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999988887
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+....+..+..
T Consensus 445 -~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~-------------- 509 (615)
T TIGR00990 445 -KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP-------------- 509 (615)
T ss_pred -HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH--------------
Confidence 89999999999999999999999999999999999999999999999999999976443322211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHH
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKEC 499 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~ 499 (546)
.+...+..+...|++++|+..+.+.+ ++....++..+|.++.+.|++++|+.+
T Consensus 510 -------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 510 -------------------------LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred -------------------------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 11122223344689999999999854 455556788999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 009045 500 LLAALKADPKAAH 512 (546)
Q Consensus 500 ~~~al~~~p~~~~ 512 (546)
|++++++.+...+
T Consensus 565 ~e~A~~l~~~~~e 577 (615)
T TIGR00990 565 FERAAELARTEGE 577 (615)
T ss_pred HHHHHHHhccHHH
Confidence 9999999887554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=245.31 Aligned_cols=428 Identities=16% Similarity=0.141 Sum_probs=291.7
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC--------CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS--------SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR 163 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~--------~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~ 163 (546)
..|.++.++|+...++ ..|.++++++|..+.++..+|.+ ..+.+...+.++...+|.||.++..|+.-|+.
T Consensus 204 gig~Cf~kl~~~~~a~-~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLGMSEKAL-LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhccchhhHH-HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 4566777777777776 77777777777777777766665 23445556777777777888888888877777
Q ss_pred cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCccc-H
Q 009045 164 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ-A 242 (546)
Q Consensus 164 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 242 (546)
.|+|..+..+...++... ..-...+..++.+|..| ..+|+|++|..+|.++++.++++ .
T Consensus 283 K~dy~~v~~la~~ai~~t---------~~~~~~aes~Y~~gRs~-----------Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNT---------ENKSIKAESFYQLGRSY-----------HAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred cccHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHH-----------HhhccHHHHHHHHHHHHccCCCCcc
Confidence 788888777777777652 11112233444555544 56667799999999999999988 7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
-.++.+|.+++..|+++.|+.+|+++++..|++.+....||.+|...+ ..+.|..+..++++..|.+..+|+.++.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999886 6788999999999999999999999998
Q ss_pred HHHHhhCccc-----------------cccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCC-----CHHHHHHH
Q 009045 319 LLLCKYGSVL-----------------AGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK-----AAHIWANL 371 (546)
Q Consensus 319 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~l 371 (546)
++........ ..+...-++|..+...|++.+|...|..++.. +++ +....+++
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 8864311100 12333445677777888888888888877765 111 23357778
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHhhhccCchhHHHH--------------
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS------------RIKDAERSQEPTEQLSW-------------- 425 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~------------~l~~~~~~~~~~~~~~~-------------- 425 (546)
|.++..+++++.|...|..+++.+|...+++..++.. .+...............
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 8888888888888888888888888777777665421 11111111111100000
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH------------hcccHHHHHHHHHhhccchhh--hHHhhHHHHHHHhc
Q 009045 426 AGNEMASILREGDPVQIEPPIAWAGFAAVQK------------THHEVAAAFETEENELSKMEE--CAGAGESAFLDQAS 491 (546)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~g 491 (546)
+-..+...+..... ..++.+...||.++. ..+.+++|+..|.+.+...+. .+-.++|.++...|
T Consensus 583 a~k~f~~i~~~~~~--~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTST--KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhcc--CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 00111112222111 144556666666653 334567777777776654433 34447777777777
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
++.+|+..|.++.+-..++.++|.++|.||..+|+|..|++.|+.++..+-
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777766666677777777777777777777777777776654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=221.72 Aligned_cols=386 Identities=16% Similarity=0.109 Sum_probs=267.0
Q ss_pred ccchhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009045 88 DVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQ 162 (546)
Q Consensus 88 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~ 162 (546)
......|+.+++.|++..+| ..|+.||++.|+..--+..+... +..+..+.+.++++++|+...+++.++..+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAI-kyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAI-KYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHH-HHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34456899999999999998 99999999999864444443333 3377778899999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHHhc-cc-------------------------chhccchhhHHHHHHHhhcccc-----ccccC
Q 009045 163 RLGQPLKAVSSYEKAEEILL-RC-------------------------EADIARPELLSLVQIHHAQCLL-----PESSG 211 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p-~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~g 211 (546)
.+|++++|+....-..-... ++ ...+.-|.... +..+...-.. ....+
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF-IASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH-HHHHHhhccccccccccCCC
Confidence 99999998755433221100 00 00000111110 1111110000 00000
Q ss_pred C---Ccc---cccc---ChhhHHHHHHHHHHHHhcC----ccc---------HHHHHHHHHHHHHcCChHHHHHHHHhhH
Q 009045 212 D---NSL---DKEL---EPEELEEILSKLKESMQSD----TRQ---------AVVWNTLGLILLKSGRLQSSISVLSSLL 269 (546)
Q Consensus 212 ~---~~~---~~~~---~~~~~~~A~~~~~~al~~~----p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al 269 (546)
. ... -.++ ....|.+|...+.+..... ..+ +.++...|..++-.|++-.|...|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0 000 0001 1124555555555443211 111 5677778888888888888888888888
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++|.+...|..+|.+|....+.++-...|.++..++|.+++.|+..|.+++ -++++++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f---------------------lL~q~e~ 412 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF---------------------LLQQYEE 412 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH---------------------HHHHHHH
Confidence 8888888778888888888888888888888888888888888888888877 6777888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
|+..|++++.++|.+.-.+..++.+.+++++++++...|+.+.+..|+.++.+...+.....
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD------------------ 474 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD------------------ 474 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh------------------
Confidence 88888888888888888888888888888888888888888888888888777666655332
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--ch------hhhHHhhHHHH-HHHhccHHHHHHHH
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KM------EECAGAGESAF-LDQASAVNVAKECL 500 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~------~~~~~~~la~~-~~~~g~~~~A~~~~ 500 (546)
++++++|++.|..++. +. ....+.+.|.+ +.-.+++..|+..+
T Consensus 475 ----------------------------qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 475 ----------------------------QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred ----------------------------HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHH
Confidence 3444555555554333 22 11222333322 22348899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 501 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 501 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++++++|.+..++..||.+..++|+.++|+++|++++.+-.
T Consensus 527 ~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 527 RKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=230.01 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=242.1
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...|...|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-. +.-..++.-.-+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r---------v~~meiyST~LW------- 398 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR---------VKGMEIYSTTLW------- 398 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------ccchhHHHHHHH-------
Confidence 4556667777666778888999999999999999999999999999885532 221222211110
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
...+--+--.+.+..+..+|+.++.|..+|.||..+++++.|+++|++++.++|.+..+|..+|.-+....++
T Consensus 399 -------HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 -------HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred -------HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence 1111122223345677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
+.|..+|++++..+|.+..+|+.+|.+|. ++++++.|.-+|++|++++|.+......+|
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~---------------------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGLGTVYL---------------------KQEKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhhhhhee---------------------ccchhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 99999999999999999999999999998 899999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++.++|+.++|+.+|++|+.++|.++...+..+.
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~--------------------------------------------- 565 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS--------------------------------------------- 565 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH---------------------------------------------
Confidence 99999999999999999999999998755544433
Q ss_pred HHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
++...+++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+.
T Consensus 566 ---------------------------------il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 566 ---------------------------------ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred ---------------------------------HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 66777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhccc
Q 009045 533 CLEKVLMVYCSS 544 (546)
Q Consensus 533 ~~~~al~~~~~~ 544 (546)
.|.-|+++-+..
T Consensus 613 ~f~~A~~ldpkg 624 (638)
T KOG1126|consen 613 HFSWALDLDPKG 624 (638)
T ss_pred hhHHHhcCCCcc
Confidence 888888776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=223.30 Aligned_cols=371 Identities=15% Similarity=0.146 Sum_probs=238.3
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
+..|.+.|..+++..|+|..++++.|.+.+..|+|..|+.+|++++.++|... ++. ..++|.++..+|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-----aD~------rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-----ADV------RIGIGHCFWKLGM 214 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-----CCc------cchhhhHHHhccc
Confidence 45666777777777777777777777777777777777777777777766542 111 1122223323332
Q ss_pred Cc--------------------------cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 213 NS--------------------------LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266 (546)
Q Consensus 213 ~~--------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 266 (546)
.. .-.......+..++..+.++...++.+|.++..|+..++..|+|..+.....
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 20 0001122344445555555555555555555555555555555555555555
Q ss_pred hhHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 267 SLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 267 ~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
.++...- --++.++.+|++|..+|+|++|..+|.++++.++++ .-.++.+|.+++
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i--------------------- 353 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI--------------------- 353 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH---------------------
Confidence 5544321 123345555556666666666666666666555555 333444444444
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG----DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
..|+++.|+.+|+++++..|++.++...||.+|...+ ..+.|..+..++++..|.+..+|..++......-. ..
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--WA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--HH
Confidence 7777777777777777777777777777777777765 55677777777777777777777766654332111 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc----hhh--------hHHhhHHHH
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEE--------CAGAGESAF 486 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~--------~~~~~la~~ 486 (546)
....+..+. ..+...... -.+...+++|..++..|++.+|...+..++.. .+. ...|++|.+
T Consensus 432 sL~~~~~A~----d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 432 SLDAYGNAL----DILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred HHHHHHHHH----HHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 122222222 222222221 45678999999999999999999999886553 111 247899999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+...++++.|.+.|..+++..|...+++..+|......++..+|...++.++.+-.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999998888999999999999999987643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=232.63 Aligned_cols=377 Identities=12% Similarity=0.036 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.+. .++..++.++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------------~a~~~la~~l------ 93 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------------DYQRGLILTL------ 93 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHH------
Confidence 7778888888888888888899999999999999999999999998876541 2223444443
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
...|++++|+..++++++.+|+++. +..+|.++...|++++|+..|++++++.|++..++..+|.++...|..+
T Consensus 94 -----~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 -----ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred -----HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 3456669999999999999999888 8889999999999999999999999999999999888999888888888
Q ss_pred HHHHHHHHHHhhCCCCHH-----HHHHHHHHHHH-----------------hhCccc----cccccc--c-----c-cch
Q 009045 294 QSAKCFQDLILKDQNHPA-----ALINYAALLLC-----------------KYGSVL----AGAGAN--T-----G-EGA 339 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~-----------------~~~~~~----~~~~~~--~-----~-~~~ 339 (546)
+|+..++++.. .|+... ....+..+... ...... ..+... . . ++.
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 88888876654 433200 00000000000 000000 000000 0 1 232
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHhh
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAA-HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRYAVAVSRIKDAE 414 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~l~~~~ 414 (546)
+...|++++|+..|+++++..+..+ .+...+|.+|..+|++++|+..|++++..+|.+. .....++...+.
T Consensus 247 -Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~--- 322 (765)
T PRK10049 247 -LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE--- 322 (765)
T ss_pred -HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh---
Confidence 3577999999999999999864322 2344469999999999999999999999888762 222233222211
Q ss_pred hccCchhHHHHHHHHHHHHHhcC---------CCCCCCc--HHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHh
Q 009045 415 RSQEPTEQLSWAGNEMASILREG---------DPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGA 481 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~ 481 (546)
.+.+..+...+....... ....|++ ..++..++.++...|++++|+..+.+.+. |.....++
T Consensus 323 -----~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 323 -----SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred -----cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 122223333333333221 1112232 34678899999999999999999998554 77778899
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.++...|++++|+..++++++++|++..+++.+|.++...|++++|...++++++..|..
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999988754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=216.33 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=205.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
+.+..+..+|..|+.|..+|+||..+++++.|+++|++|++++|.. +++|..+|.. +
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-------------------aYayTLlGhE----~ 465 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-------------------AYAYTLLGHE----S 465 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-------------------chhhhhcCCh----h
Confidence 5677888999999999999999999999999999999999997643 3445556666 7
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
....+++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+..
T Consensus 466 ~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 466 IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
|++|+.++|.++-..+..+.++. ..+++++|+..+++.-++.|+...++..+|.+|.++
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~---------------------~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILF---------------------SLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHH---------------------hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999888 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChh
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~ 400 (546)
|+.+.|+..|.-|..++|.-..
T Consensus 605 ~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred ccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999998654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=192.69 Aligned_cols=354 Identities=14% Similarity=0.123 Sum_probs=242.1
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHH
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKA 170 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A 170 (546)
.|.++.++|....++ ..|...+...|-+..+|..++.+ -.-++........-| .+.-.-+.++.++....+.+++
T Consensus 170 ~Gvv~k~~~~~s~A~-~sfv~~v~~~P~~W~AWleL~~l--it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAI-DSFVEVVNRYPWFWSAWLELSEL--ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHhhchHHHHH-HHHHHHHhcCCcchHHHHHHHHh--hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554 55566666666666666555544 222222222332223 2333344556666666666666
Q ss_pred HHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 009045 171 VSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 249 (546)
Q Consensus 171 ~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 249 (546)
+.-++..+.. .|.+. -. ... .|.+ ...+.++++|+..|+.+.+.+|-..+-+-...
T Consensus 247 ~~k~e~l~~~gf~~~~------~i----~~~--~A~~-----------~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSM------YI----KTQ--IAAA-----------SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHhccCCccH------HH----HHH--HHHH-----------HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 6666666555 22221 11 011 1111 23556677777777777777776655555555
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
++++-..+-.+---.-+.+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|.
T Consensus 304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-------- 375 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-------- 375 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH--------
Confidence 555555554443334445555666666667777777777788888888888888888888777777777776
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
.+++...|++.|++|++++|.+..+|+.||++|.-++.+.=|+-+|++++...|.+
T Consensus 376 -------------EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD----------- 431 (559)
T KOG1155|consen 376 -------------EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND----------- 431 (559)
T ss_pred -------------HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-----------
Confidence 67777888888888888888888888888888888888888888888888777765
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFL 487 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~ 487 (546)
+..|..+|.+|.+.++.++|+..|.+++. +.+..+++.+|.+|
T Consensus 432 -----------------------------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 432 -----------------------------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred -----------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 36788899999999999999999999665 44558899999999
Q ss_pred HHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 488 DQASAVNVAKECLLAALK-------ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 488 ~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.+.++.++|..+|++.++ .+|+-..+...|+.-+.+.+++++|..+..+++.
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 999999999999999998 4565677888899999999999999988776654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=226.09 Aligned_cols=298 Identities=16% Similarity=0.061 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 135 REEKGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.+...+.+++..+|. ++.+|+.+|.++.. |++.+|+..|.+++...|+. ..+..++.++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~-------------~~~L~lA~al----- 519 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA-------------WQHRAVAYQA----- 519 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch-------------HHHHHHHHHH-----
Confidence 344567777777888 99999999999997 89999999999999986642 1123333332
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
...|++++|+..|++++...|.+ ..++.+|.++...|++++|+.+|+++++.+|.+...+..++......|++
T Consensus 520 ------~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 520 ------YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred ------HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 35567799999999988776654 56789999999999999999999999999999988888888888888999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++|+..|+++++++|+ ...+..+|.++. +.|++++|+..|++++.++|+++.++.++|
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~---------------------~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYR---------------------QRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999996 888988888887 999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++...|++++|+..|+++++.+|+++. ++..+|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~----------------------------------------------a~~nLA 684 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPA----------------------------------------------LIRQLA 684 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH----------------------------------------------HHHHHH
Confidence 9999999999999999999999998753 455566
Q ss_pred HHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 453 AVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.++...|++++|+..+++.+. +.........|.+..+..+++.|.+.+.++...+|+.. +....|.++...+++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 666677777777777766433 44445555666666666677777777777777766666 666666666666665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=219.83 Aligned_cols=369 Identities=12% Similarity=0.032 Sum_probs=269.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhH-HHHHHHhhccccc-----
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQCLLP----- 207 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~----- 207 (546)
.++.+......+..|.+..++..++......|++++|...|+++... +..... .+... .++.++.......
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL--SQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc--CHHHHHHHHHHHHhCCcccchHHH
Confidence 55556677778888999999999999999999999999999999875 222111 11111 2222222221100
Q ss_pred cccCCC--ccccccChhhHH---HHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHH
Q 009045 208 ESSGDN--SLDKELEPEELE---EILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG 280 (546)
Q Consensus 208 ~~~g~~--~~~~~~~~~~~~---~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 280 (546)
..+|.. ......-.|++. .+...+.+++...|. ++.+++.+|.++.. +++.+|+..|.+++...|++. ...
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 000100 000001134443 355666666777777 89999999999988 899999999999999999754 466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
.+|.++...|++++|+..|++++...|.+ ..+..++.++. +.|++++|+.+|+++++.
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all---------------------~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQ---------------------AAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhc
Confidence 67888889999999999999988775554 45667777766 889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 361 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
+|.....+..++......|++++|+..|+++++++|+ ...+..++...... . ....+ ...+......
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G-------~~deA----~~~l~~AL~l 638 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-H-------NVPAA----VSDLRAALEL 638 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-C-------CHHHH----HHHHHHHHHh
Confidence 9998888888887788889999999999999999996 76666666533321 1 11112 2222333344
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
.|+++.++..+|.++...|++++|+..+.+++. |....+++++|.++...|++++|+..|+++++++|+++.+....|
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 567778888888888888888888888887554 666677888888888888888888888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhc
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.+.....+++.|.+.++++..+-+
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc
Confidence 888888888888888888776544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-24 Score=207.06 Aligned_cols=289 Identities=15% Similarity=0.132 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|.++++.+|++..++..+|.++...|++++|+..+++++.. |.. +. ......+..++.++
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~------~~-~~~~~~~~~La~~~------ 117 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDL------TR-EQRLLALQELGQDY------ 117 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCC------CH-HHHHHHHHHHHHHH------
Confidence 77888888888888888888888888888888888888888888764 211 00 01112333444443
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----HHHHHHHHHHHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQ 288 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~ 288 (546)
...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++..
T Consensus 118 -----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 118 -----LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred -----HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 3445557777777777777777777777777777777777777777777777666542 245567777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-HHH
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-AHI 367 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~ 367 (546)
.|++++|+..|+++++..|++..++..++.++. ..|++++|+..+++++..+|.+ ..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLAL---------------------AQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 777777777777777777777766666666665 6777777777777777776664 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
+..++.+|...|++++|+..++++++..|+...
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----------------------------------------------- 284 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADL----------------------------------------------- 284 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-----------------------------------------------
Confidence 667777777777777777777777777665321
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cC
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TG 525 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g 525 (546)
...++.++...|++++|+..++++++..|++......++..+.. .|
T Consensus 285 --------------------------------~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 285 --------------------------------LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred --------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 12344477888999999999999999999987666555544422 56
Q ss_pred ChHHHHHHHHHHHHHh
Q 009045 526 DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~ 541 (546)
+..+|+..+++.++..
T Consensus 333 ~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 333 RAKESLLLLRDLVGEQ 348 (389)
T ss_pred cchhHHHHHHHHHHHH
Confidence 8899999999888743
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=219.11 Aligned_cols=369 Identities=11% Similarity=0.001 Sum_probs=274.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
-...|-++.-..-...+....|+.++|+..|.++....|.+ ...+..++.++ ...|+
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~------------a~~~~~lA~~~-----------~~~g~ 64 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLP------------ARGYAAVAVAY-----------RNLKQ 64 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHH-----------HHcCC
Confidence 44567788888888899999999999999999998765433 23344555554 34556
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..|++++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccc--cc---------------cccc-----cchHHHhhcCH---HHHHHHHHHHH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAG--AG---------------ANTG-----EGACLDQASAV---NVAKECLLAAL 358 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~--~~---------------~~~~-----~~~~~~~~~~~---~~A~~~~~~al 358 (546)
+..|++..++..++.++........+. .. .... ++......+++ ++|+..++.++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 999999999999988876432211000 00 0000 01111122334 78999999999
Q ss_pred hcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 009045 359 KADPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSRIKDAERSQEPTEQLSWAGNEM 430 (546)
Q Consensus 359 ~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (546)
+..|.++. ++.....++...|++++|+..|+++++..+..+. +...++...+.. .....+...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~--------g~~e~A~~~l 295 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL--------HQPEKAQSIL 295 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc--------CCcHHHHHHH
Confidence 76443322 2222123446789999999999999988643322 222223322221 1233344444
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh-----------------hhHHhhHHHHHHHhccH
Q 009045 431 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME-----------------ECAGAGESAFLDQASAV 493 (546)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~la~~~~~~g~~ 493 (546)
...+................++.++...|++++|+..+.......+ ..++..+|.++...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 4444322111111235677788889999999999999887554321 24567899999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
++|+..+++++...|+++.++..+|.++...|++++|++.+++++++.|..
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999988654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-23 Score=186.84 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=264.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
-.++-.++..|.++...|....|+..|..++...|-. . .+|..++ +.-.-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~-----W-------~AWleL~------------------~lit~ 210 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF-----W-------SAWLELS------------------ELITD 210 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc-----h-------HHHHHHH------------------Hhhch
Confidence 4568888999999999999999999999999875533 2 2232222 22333
Q ss_pred HHHHHHHHhcCc--ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 228 LSKLKESMQSDT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 228 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++.....+..-| .+...-+.++.++....+.++++.-++..+.. .|.+...-...|.++..+.++++|+..|+...+
T Consensus 211 ~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k 290 (559)
T KOG1155|consen 211 IEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK 290 (559)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 344444443334 34445566888898989999999999999988 888888999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCcccc-------------ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLA-------------GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
.+|-..+-...+..+++.+...... ......-+|.+|...++.++|+.+|+++++++|....+|..+
T Consensus 291 nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm 370 (559)
T KOG1155|consen 291 NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM 370 (559)
T ss_pred cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh
Confidence 9998777766666666544332211 144445589999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.-|..+++...|+..|++|++++|.+. .+|+++
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------------------------------RAWYGL 404 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINPRDY----------------------------------------------RAWYGL 404 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCchhH----------------------------------------------HHHhhh
Confidence 9999999999999999999999999765 467777
Q ss_pred HHHHHhcccHHHHHHHHHhh--ccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 452 AAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
|++|.-++...=|+-.|+++ +.|.+...|..||.||.+.++.++|+++|.+++.....+..++..||.+|.++++..+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 77888888888888888884 5688999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009045 530 SGKCLEKVLMVY 541 (546)
Q Consensus 530 A~~~~~~al~~~ 541 (546)
|..+|++.++.+
T Consensus 485 Aa~~yek~v~~~ 496 (559)
T KOG1155|consen 485 AAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=181.13 Aligned_cols=320 Identities=18% Similarity=0.125 Sum_probs=260.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|.+.+-++.+|.-++..|++..|+..|..|++.+|++ ..+++..+.+|..+|+. .-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~------------Y~aifrRaT~yLAmGks-----------k~ 90 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN------------YQAIFRRATVYLAMGKS-----------KA 90 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------HHHHHHHHHHHhhhcCC-----------cc
Confidence 46678889999999999999999999999999997765 24556777787777777 99
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHH------------HHHHHHHHHcCC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCI------------GNLGIAYFQSGD 291 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~------------~~la~~~~~~g~ 291 (546)
|+..+.+++++.|+...+...+|.+++++|.+++|...|++++.-+|.+. +++ ......++..|+
T Consensus 91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999552 222 233444566899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+..|+.+....+++.|-+...+...+.+|. ..|+...||..++.+-++..++.+.++.+
T Consensus 171 ~~~ai~~i~~llEi~~Wda~l~~~Rakc~i---------------------~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPWDASLRQARAKCYI---------------------AEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999988888888887 89999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
+.+++..|+.+.++...+++++++|++...+-..-. +.... + ...-
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk--lkKv~-----------------K---------------~les 275 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK--LKKVV-----------------K---------------SLES 275 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH--HHHHH-----------------H---------------HHHH
Confidence 999999999999999999999999997644321110 00000 0 1111
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhhhH------HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEECA------GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
+......++|.+++...++.+...+..+ .-.+..|+...+++.+|+..+..++..+|+++.++...+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 2233455677777777777666444422 3345668888888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhccc
Q 009045 526 DHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~~~ 544 (546)
.|+.|+..|++|.++-++.
T Consensus 356 ~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 9999999999998876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=191.72 Aligned_cols=190 Identities=18% Similarity=0.106 Sum_probs=128.7
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
-.|+.-.|...|..+|+++|.....|..+|.+|....+.++-...|.++..++|.++..++..+...+.- ++
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL--------~q 409 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL--------QQ 409 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH--------HH
Confidence 5566666666666666666665555666666666666666666666666666666666665555433311 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECL 500 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 500 (546)
+..+. .-+.....+.|++...+..++.+..++++++++...|..... |..++.+...|.++...++|++|++.|
T Consensus 410 ~e~A~----aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 410 YEEAI----ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHH----HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 11222 222233334455556677777777788888888888888766 444567778899999999999999999
Q ss_pred HHHHHhCCC------CHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHhccc
Q 009045 501 LAALKADPK------AAHIWANLANAY-YLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 501 ~~al~~~p~------~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+++++.|. ++..+...|.+. ...+++.+|+..+++|+++-+.+
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH
Confidence 999999998 666666666544 35689999999999999987654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-23 Score=201.12 Aligned_cols=272 Identities=18% Similarity=0.132 Sum_probs=219.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.....+.+|..+...|++++|+..|+++++.+|++ ..++..++.++ ...|++++|+.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~-----------~~~g~~~~A~~ 90 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET------------VELHLALGNLF-----------RRRGEVDRAIR 90 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc------------HHHHHHHHHHH-----------HHcCcHHHHHH
Confidence 45566777889999999999999999999986643 23344455544 45566699999
Q ss_pred HHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 230 KLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 230 ~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.+++++...+.. ...+..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 91 IHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 999988753322 3577889999999999999999999999988888899999999999999999999999999988
Q ss_pred CCCCHH-----HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 306 DQNHPA-----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 306 ~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.|.+.. .+..++ .++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 171 ~~~~~~~~~~~~~~~la---------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 171 GGDSLRVEIAHFYCELA---------------------QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred cCCcchHHHHHHHHHHH---------------------HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 776543 222333 344488999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 460 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (546)
+++|+..|++++..+|.+..
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~------------------------------------------------------------ 249 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLS------------------------------------------------------------ 249 (389)
T ss_pred HHHHHHHHHHHHHHChhhHH------------------------------------------------------------
Confidence 99999999999987765321
Q ss_pred HHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 461 VAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 461 ~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..+..++.+|...|++++|+..++++++..|+... +..+|.++...|++++|+..|+++++.
T Consensus 250 -----------------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 250 -----------------EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 11123344777889999999999999999998754 489999999999999999999999998
Q ss_pred hcc
Q 009045 541 YCS 543 (546)
Q Consensus 541 ~~~ 543 (546)
.++
T Consensus 312 ~P~ 314 (389)
T PRK11788 312 HPS 314 (389)
T ss_pred CcC
Confidence 764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-22 Score=193.78 Aligned_cols=327 Identities=16% Similarity=0.164 Sum_probs=244.6
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccc
Q 009045 126 SGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCL 205 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 205 (546)
+.+|.. ..|++.+.++++.+|.++.+|+.||.+|..+|+.+++...+-.|-.
T Consensus 150 farg~~--eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-------------------------- 201 (895)
T KOG2076|consen 150 FARGDL--EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-------------------------- 201 (895)
T ss_pred HHhCCH--HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--------------------------
Confidence 344666 7777788888888888888888888888888877766666555544
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
++|.+...|..++....++|++.+|.-+|.+||+.+|.+....+..+.+
T Consensus 202 -------------------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 202 -------------------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred -------------------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4677788999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--C
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--K 363 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 363 (546)
|.++|+...|...|.+++...|....-+ ....+.. .+..+...++-+.|++.++.++.... .
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er-~~d~i~~---------------~~~~~~~~~~~e~a~~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIER-IEDLIRR---------------VAHYFITHNERERAAKALEGALSKEKDEA 314 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHH-HHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999998322111 1111111 13344467777999999999998432 2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCh--------------------------hH-HHHHHHHHHHHhh
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCM--------------------------ST-RYAVAVSRIKDAE 414 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~--------------------------~~-~~~l~~~~l~~~~ 414 (546)
..+.+..++.++.....++.|.......... .+++. .+ +..+++..+..
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~-- 392 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE-- 392 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc--
Confidence 4556778899999999999999888776651 11111 01 11111111111
Q ss_pred hccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch---hhhHHhhHHHHHHHhc
Q 009045 415 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM---EECAGAGESAFLDQAS 491 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~la~~~~~~g 491 (546)
.+ ..+.+...+........+.+..+..++.++...|++.+|+..+....+.. ....|+.+|.||..+|
T Consensus 393 --~e-------~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 393 --RE-------LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred --cc-------hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 00 11122222333332344677899999999999999999999999866632 3457999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999887643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=179.10 Aligned_cols=383 Identities=15% Similarity=0.126 Sum_probs=280.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH------HHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKA------EEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
..+..+....+..+.++.+..++++|...+.++ +..+|.+....-..+......-....+.++...|.. |
T Consensus 76 ~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~----y 151 (611)
T KOG1173|consen 76 KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKV----Y 151 (611)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeeh----h
Confidence 556678888999999999999999999998854 111111100000000000000001112222333444 6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----------------ChHHHHHHHHhhH----------hc
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-----------------RLQSSISVLSSLL----------AV 271 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------------~~~~A~~~~~~al----------~~ 271 (546)
....++++|...|.+++..++.+.+++..+-..++... ...+=++.+-++. ..
T Consensus 152 ~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 152 VALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred hhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 77788899999999999999988776665544333221 1111111111111 01
Q ss_pred CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc-------------cc
Q 009045 272 DP--------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL-------------AG 330 (546)
Q Consensus 272 ~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-------------~~ 330 (546)
.| ++.+.....+..++..++|.+..+..+..++.+|-+...+.....++...++... ..
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 12 3567788889999999999999999999999999887665333224443322211 14
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+..|+..|-+|...|++.+|..+|.++..++|....+|...|..+...|..++|+.+|..|-++.|........++....
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999888777776544
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh---------hhHHh
Q 009045 411 KDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME---------ECAGA 481 (546)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~---------~~~~~ 481 (546)
.... .+-..+.+.....+.|.+|.++..+|.+....+.+.+|...|+..+.... ...+.
T Consensus 392 ~t~n------------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 392 RTNN------------LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred Hhcc------------HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 2111 11233455666677899999999999999999999999999998763211 12367
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+||.++.+.+++++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-+-+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999987653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=172.10 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=228.2
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
-|+.+.-.|.+..++ ..|..|++.+|+++.+++.++.. ...-+...+.+++++.|+...+...+|.+++++|++
T Consensus 44 lGk~lla~~Q~sDAL-t~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDAL-THYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHH-HHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 466666677777777 89999999999999888887776 557778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNT 247 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 247 (546)
++|...|+..++.+|.+.........+..+.-+..+-. + +..++..|+...|+.+....+++.|.++..+..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~----q----l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQ----Q----LKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHH----H----HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999998865332211111111111111000 0 011346678899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+-.+-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK------ 268 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK------ 268 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999998765432222110
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..-.+..+.-....++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+.+++.++|++..++
T Consensus 269 ---v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 269 ---VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 000001122334678899999999999999888433 445667888889999999999999999999876544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=180.67 Aligned_cols=325 Identities=13% Similarity=0.093 Sum_probs=256.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..|+|+.|+.+|..++.++|.+...|.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..++-+|+|++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc------------------------------------------------
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLA------------------------------------------------ 329 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~------------------------------------------------ 329 (546)
.|.+.|+.+|++......++.++.........
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99999999999998888887766322000000
Q ss_pred ---------------------------------------------------ccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 330 ---------------------------------------------------GAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 330 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
.+.....+|....+..++..|++.|..++
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 01111227888888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--Hhhhcc----CchhHHHH-------
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK--DAERSQ----EPTEQLSW------- 425 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~--~~~~~~----~~~~~~~~------- 425 (546)
.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-+..++..... ...... .....+..
T Consensus 252 el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 252 ELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred hHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 999 8899999999999999999999999999887766544333333322111 110000 00011111
Q ss_pred -----HHHHHHHHH---hcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHH
Q 009045 426 -----AGNEMASIL---REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNV 495 (546)
Q Consensus 426 -----~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~ 495 (546)
......+.+ .....+.|....--..-|..++..|+|..|+..|.+++. |.+...+.+.|.||.++|.+..
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 111111111 111223344444556668899999999999999999776 5566778899999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 496 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 496 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|+..++.+++++|+...+|...|.++..+.+|++|++.|++++++-++
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-20 Score=188.81 Aligned_cols=418 Identities=10% Similarity=-0.022 Sum_probs=240.4
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCccc-------ccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGD-------QSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRL 164 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~-------~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 164 (546)
..+...++.|+...++ ..|.++++..|++..+ +...| +..+|+..+++++..+|.....+..+|.++...
T Consensus 39 ~~aii~~r~Gd~~~Al-~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVL-DYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHH-HHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 3455555566655554 5556666665554321 11122 225555555555522333333333445556666
Q ss_pred CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHH
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVV 244 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 244 (546)
|++++|++.|+++++.+|++ + .++..++.++ ...++.++|+..+++++..+|.+...
T Consensus 116 gdyd~Aiely~kaL~~dP~n------~------~~l~gLa~~y-----------~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTN------P------DLISGMIMTQ-----------ADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCC------H------HHHHHHHHHH-----------hhcCCHHHHHHHHHHhcccCcchHHH
Confidence 66666666666666555443 1 1112223332 22333456666666665555553332
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--------
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY-------- 316 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 316 (546)
..++.++...++..+|++.|+++++.+|++..++..+..+....|-...|.+...+--.........++..
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 33344444445554466666666666666666655555555555555555444332110000000000000
Q ss_pred ---------------HHHHHHhhCcccc----ccc--cc-----cccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHH
Q 009045 317 ---------------AALLLCKYGSVLA----GAG--AN-----TGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWA 369 (546)
Q Consensus 317 ---------------~~~~~~~~~~~~~----~~~--~~-----~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 369 (546)
..--+........ .+. .. ...-..+...|++.++++.|+...... +--.-+..
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0000000000000 000 00 012234457788999999998877544 22345677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc-------
Q 009045 370 NLANAYYLTGDHRSSGKCLEKAAKLEPN------CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE------- 436 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------- 436 (546)
..|..|...++.++|+.+|+.++.-.|. .......+....+. ..+ +..+...+......
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-~e~-------~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-SEQ-------LDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-ccc-------HHHHHHHHHHHHhcCCcEEec
Confidence 7899999999999999999999886632 11112223222221 111 11121112222221
Q ss_pred ----CCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 437 ----GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 437 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
....+++-......++.++...|++.+|...++..+. |.+...+..+|.++...|.+.+|...++.+..++|++
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 1233455666778899999999999999999999555 6677778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
..+.+.+|.++..+|++.+|....++.++.+|+.
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999999988754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=167.77 Aligned_cols=274 Identities=12% Similarity=0.030 Sum_probs=179.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcC
Q 009045 159 LMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD 238 (546)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~ 238 (546)
.+|+..++...|-......+++....... ....+.. .+....+|.+|.++| -+.+|.+.++..++..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~d-wwWk~Q~gkCylrLg-----------m~r~AekqlqssL~q~ 253 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLD-WWWKQQMGKCYLRLG-----------MPRRAEKQLQSSLTQF 253 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHh-HHHHHHHHHHHHHhc-----------ChhhhHHHHHHHhhcC
Confidence 35556677777776666665553111000 0111111 112223444443333 3377777777777665
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|. ++.+..|+.+|.+..+...|+..|...++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.--++.
T Consensus 254 ~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~ 332 (478)
T KOG1129|consen 254 PH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV 332 (478)
T ss_pred Cc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence 53 56666777777777777777777777777777777777777777777777777777777777777777666544444
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
-|+ -.++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++....+.
T Consensus 333 ~yf---------------------Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 333 GYF---------------------YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred ccc---------------------cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 443 55667777777777777777777777777777777777777777777766554322
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
. ...+
T Consensus 392 ~---------------------------------------------------------------------------~aaD 396 (478)
T KOG1129|consen 392 G---------------------------------------------------------------------------QAAD 396 (478)
T ss_pred c---------------------------------------------------------------------------hhhh
Confidence 1 1234
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.||++|.+....|++..|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..|-.+.|
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 5666777777788888888888888888888888888888888888888888888888877664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=168.21 Aligned_cols=359 Identities=16% Similarity=0.165 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++++|+.-|.....+.+|+..|+-.++- ..+.+-|.+-..+|++ +++..+|.+|+++
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivkn-----------------kmf~nag~lkmnigni----~~kkr~fskaikf 259 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKN-----------------KMFPNAGILKMNIGNI----HFKKREFSKAIKF 259 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcc-----------------cccCCCceeeeeecce----eeehhhHHHHHHH
Confidence 456777777777777777777777766653 2233445555566666 6677777777777
Q ss_pred HHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH-----------------------
Q 009045 231 LKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------------------- 282 (546)
Q Consensus 231 ~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------------------- 282 (546)
|+-++..-|.- ..++.++|..+.+.|+|+.|+..|+.+++..|+... -++|
T Consensus 260 yrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 260 YRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred HHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 77776665532 345566666666666666666666666555544222 2222
Q ss_pred --------------------------------------------------------------------------------
Q 009045 283 -------------------------------------------------------------------------------- 282 (546)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (546)
T Consensus 339 p~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la 418 (840)
T KOG2003|consen 339 PGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA 418 (840)
T ss_pred CCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh
Confidence
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccc---------------cccccccch
Q 009045 283 -------GIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAG---------------AGANTGEGA 339 (546)
Q Consensus 283 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~ 339 (546)
+.-+++.|+++.|++.++-.-+.+.... .+-.++..+++.++++..++ +....+.|.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 3334445555555555543333222211 22344444555444444432 334456788
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCc
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 419 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~ 419 (546)
+-...|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++..+-.
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-------- 570 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-------- 570 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 888899999999999999999999999999999999999999999999999888877888887777653211
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHH
Q 009045 420 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAK 497 (546)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~ 497 (546)
.+...+ ....+.....+.|.+|.++..++.+|...|+-.+|+.++-.... |.+.+..-.+|..|....-+++|+
T Consensus 571 led~aq----aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 571 LEDPAQ----AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred hhCHHH----HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 111111 22344555667789999999999999999999999998776544 444455556777888888899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 498 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+|+++--+.|+...-....+.|+.+.|+|++|.+.|+..-..++.
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 9999999999998888888999999999999999999998887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=188.19 Aligned_cols=255 Identities=22% Similarity=0.206 Sum_probs=110.5
Q ss_pred ccChhhHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 218 ELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 56778889999999776544 488999999999999999999999999999999999999999899888 799999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLAN 373 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 373 (546)
+..++++.+..+ ++..+.....++. ..++++++...++++.... +.++..|..+|.
T Consensus 97 ~~~~~~~~~~~~-~~~~l~~~l~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 97 LKLAEKAYERDG-DPRYLLSALQLYY---------------------RLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp ----------------------H-HH---------------------HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccc-ccchhhHHHHHHH---------------------HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999987664 3444544444444 8899999999999987655 678999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+.+|+++++.+|++..+ +..++.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~----------------------------------------------~~~l~~ 188 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDA----------------------------------------------RNALAW 188 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHH----------------------------------------------HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHH----------------------------------------------HHHHHH
Confidence 9999999999999999999999987643 445566
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
++...|+++++...+..... +.+...+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 67778888876666655332 4555678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 009045 532 KCLEKVLMVY 541 (546)
Q Consensus 532 ~~~~~al~~~ 541 (546)
.+++++++.+
T Consensus 269 ~~~~~~~~~l 278 (280)
T PF13429_consen 269 RLRRQALRLL 278 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=188.71 Aligned_cols=249 Identities=14% Similarity=0.035 Sum_probs=204.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
..+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 356779999999999999999999999999887644 34789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
++++|+..|+++++++|++..+++.+|.++. ..|++++|+..++++++++|.++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLF---------------------MAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999999999999998887 8899999999999999999998888777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
++.+++..|++++|+..+++++... |+++ ..+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~----------------------------------------------~~~~ 445 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNP----------------------------------------------ILLS 445 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCH----------------------------------------------HHHH
Confidence 7778888999999999999998775 4443 3466
Q ss_pred HHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 450 GFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.+|.++...|++++|...+.+... +....++..++..|...|+ +|...+++.++..-....-...+..+|.-.|+.
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 677788889999999999887544 3333556677777777774 777777776664333333334488888888888
Q ss_pred HHHHHHHHHHH
Q 009045 528 RSSGKCLEKVL 538 (546)
Q Consensus 528 ~~A~~~~~~al 538 (546)
+.+..+ +++.
T Consensus 524 ~~~~~~-~~~~ 533 (553)
T PRK12370 524 IAEKMW-NKFK 533 (553)
T ss_pred HHHHHH-HHhh
Confidence 888777 5554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-19 Score=168.34 Aligned_cols=310 Identities=14% Similarity=0.092 Sum_probs=257.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
..+.+.++-|...|..+++.+|....+|...+..-...|..++-...|++++...|.....|...+..+...|+...|..
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 34566778899999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCc------------cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGS------------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.+..+++.+|++.+.|+.-..+....... .......++..+.+..-+++.++|+.+++++++..|+..
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH
Confidence 99999999999988886554443321111 011234455567777789999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
..|..+|+++.++++.+.|...|...++..|.....|..++...-... .....+..+..+...+|.+.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~------------~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG------------QLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc------------chhhHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999998887765322111 11234456666777788899
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccch--------------------------------hhhHHhhHHHHHHHhccH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKM--------------------------------EECAGAGESAFLDQASAV 493 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------------------------------~~~~~~~la~~~~~~g~~ 493 (546)
..|.....+-...|..+.|.....++++.. ++..+..+|..+....++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 999999999999999988888777655422 223366788889999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
++|.++|.++++.+|++.++|.++-..+...|.-++-.+.|.+...
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988888888877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=173.06 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=245.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
++.+.+...+..++..++|.+..+.++..++.+|-. +... -++.+ ++. +.|+..+-.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh------~~~~---~~~ia---~l~-----------el~~~n~Lf 298 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH------LPCL---PLHIA---CLY-----------ELGKSNKLF 298 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC------cchH---HHHHH---HHH-----------HhcccchHH
Confidence 567888889999999999999999999999997643 1111 11111 222 333336666
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|..+.-.|..++|+.+|..|-++.|.
T Consensus 299 ~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 299 LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
.......+|.-|. +.++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|
T Consensus 379 ~hlP~LYlgmey~---------------------~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 379 CHLPSLYLGMEYM---------------------RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred CcchHHHHHHHHH---------------------HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 8777777777766 8899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q 009045 389 EKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE 468 (546)
Q Consensus 389 ~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 468 (546)
+.++..-+.... +. +.-...+.++|.++.+++++++|+..+
T Consensus 438 ~~~l~~ik~~~~-----------------------------------e~----~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 438 QKALEVIKSVLN-----------------------------------EK----IFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHhhhccc-----------------------------------cc----cchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 999943222100 00 001135899999999999999999999
Q ss_pred Hhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 469 ENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 469 ~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
++++. +.+...+..+|.+|..+|+++.|+..|.+++-+.|++..+-..|+.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99654 77778899999999999999999999999999999998777777766543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-20 Score=168.58 Aligned_cols=236 Identities=17% Similarity=0.121 Sum_probs=182.7
Q ss_pred ChhhHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
..+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44667999999999996433 34778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
+..|+++++++|++..++.++|.++. ..|++++|+..|+++++.+|+++.... ...+.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~---------------------~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~ 175 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALY---------------------YGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLA 175 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHH
Confidence 99999999999999999999999887 899999999999999999999874222 22344
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 455 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (546)
...+++++|+..|.+.+...+.....+ .+. .
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~------------------------------------------------~ 206 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKLDKEQWGW-NIV------------------------------------------------E 206 (296)
T ss_pred HccCCHHHHHHHHHHHHhhCCccccHH-HHH------------------------------------------------H
Confidence 567889999999988775543222111 111 1
Q ss_pred HhcccH--HHHHHHHHh------hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Q 009045 456 KTHHEV--AAAFETEEN------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGD 526 (546)
Q Consensus 456 ~~~~~~--~~A~~~~~~------~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 526 (546)
...|++ ++++..+.. .+.+....+|+++|.++...|++++|+.+|+++++.+| ++.+..+.+..+....++
T Consensus 207 ~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 207 FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 111111 112222221 12234457899999999999999999999999999996 667776666666554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=176.62 Aligned_cols=305 Identities=18% Similarity=0.229 Sum_probs=235.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|++++|..++.++++.+|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+.|..++....++|++.+|+-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWANLAN 373 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~ 373 (546)
|.++++.+|.+....+..+.++. +.|++..|+..|.+++...|.. ...-...+.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~---------------------~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQ---------------------KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHH---------------------HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988887 8999999999999999999931 223344577
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHhh-----hcc------Cc-hhHHHHH-----HHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNC--MSTRYAVAVSRIKDAE-----RSQ------EP-TEQLSWA-----GNEMASIL 434 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~l~~~~-----~~~------~~-~~~~~~~-----~~~~~~~~ 434 (546)
.+...++-+.|++.++.++....+- ...+..++...+.... ... +. .+.-.+. ........
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 7888888899999999999833221 1112222221111100 000 00 0000000 00001122
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC-C
Q 009045 435 REGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK-A 510 (546)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 510 (546)
.......++.+.+...++.+..+.++..+++..+...-. ......++.++.+|...|++.+|+.+|..++...+. +
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 223333334444577888888888888888887766333 344467889999999999999999999999987764 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
...|+.+|.||..+|.+++|+++|++++.+-|..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999987653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=173.19 Aligned_cols=403 Identities=15% Similarity=0.092 Sum_probs=292.1
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhC--CCCHHHHHHHHH-HHHHcCChhHHHHHHHHHHHH
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKM--PKNAHAHFLLGL-MYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~--p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~ 180 (546)
+.|++++...-....-|+..+.. ....|...++..+... |.+...+...+. |+.+.|.+++++.+..+++..
T Consensus 344 e~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~ 423 (799)
T KOG4162|consen 344 EQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISL 423 (799)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 66777766655555555555443 5567777888888877 777777666655 455678999999999999985
Q ss_pred hcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHH
Q 009045 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS 260 (546)
Q Consensus 181 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 260 (546)
.-.. .... ....+..+|.+|..+.......-.+.....+++..++++++.+|.|+.+.+.++.-|..+++.+.
T Consensus 424 ~~~~-----~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~s 496 (799)
T KOG4162|consen 424 LGGQ-----RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTS 496 (799)
T ss_pred hhhh-----hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHH
Confidence 4111 1112 23455666666655544422333445566899999999999999999999999999999999999
Q ss_pred HHHHHHhhHhc-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccch
Q 009045 261 SISVLSSLLAV-DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGA 339 (546)
Q Consensus 261 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (546)
|....++++++ ..+++.+|..++.++...+++.+|+...+.++.-.|+|.........+-.
T Consensus 497 Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~------------------ 558 (799)
T KOG4162|consen 497 ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL------------------ 558 (799)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh------------------
Confidence 99999999999 55778999999999999999999999999999999988766554444443
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhc----------------
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAH---------IWANLANAYYLTGDHRSSGKCLEKAAKL---------------- 394 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------- 394 (546)
..++.++|+..+...+.+-..... .....+......++..+|+..++++...
T Consensus 559 ---~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 559 ---TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred ---hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 678899999998888776443222 2222233334445556666666555432
Q ss_pred ---CCCChhHHHHHHHHHHHHh--hhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 395 ---EPNCMSTRYAVAVSRIKDA--ERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 395 ---~p~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
.|.....|+..-...+..+ ...... .......+.+...+.+..+..|+..|..+...|+..+|...|.
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~-------~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGN-------DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111122221111111000 000000 0112234444555567788899999999999999999999999
Q ss_pred h--hccchhhhHHhhHHHHHHHhccHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcccC
Q 009045 470 N--ELSKMEECAGAGESAFLDQASAVNVAKE--CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSSN 545 (546)
Q Consensus 470 ~--~l~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 545 (546)
. .++|........+|.++.+.|+-.-|.. ++..+++++|.++++|+.+|.++.+.|+.++|.++|.-|+++-.+.+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 5568888889999999999999888877 99999999999999999999999999999999999999999987765
Q ss_pred C
Q 009045 546 L 546 (546)
Q Consensus 546 ~ 546 (546)
|
T Consensus 789 V 789 (799)
T KOG4162|consen 789 V 789 (799)
T ss_pred c
Confidence 4
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=171.53 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=178.0
Q ss_pred HcCChHHHHHHHHhhHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 254 KSGRLQSSISVLSSLLAVDP----NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
..++.+.++..+.+++...| ..+..|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-------- 109 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-------- 109 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------
Confidence 34577889999999996433 337789999999999999999999999999999999999999999888
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
..|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|+++...
T Consensus 110 -------------~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~------- 169 (296)
T PRK11189 110 -------------QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA------- 169 (296)
T ss_pred -------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-------
Confidence 999999999999999999999999999999999999999999999999999999876210
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQ 489 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~ 489 (546)
.|.. +....+++++|+..+.+.....+...|. .+.+...
T Consensus 170 -------------------------------------~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~ 208 (296)
T PRK11189 170 -------------------------------------LWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFY 208 (296)
T ss_pred -------------------------------------HHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHH
Confidence 1221 1234567888888887655433333332 3455666
Q ss_pred hccHHHH--H----HHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 490 ASAVNVA--K----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 490 ~g~~~~A--~----~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.|++..+ + ..++..+++.|...++|+++|.++...|++++|+.+|++++++.+.
T Consensus 209 lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 209 LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 6665433 2 2223334667778899999999999999999999999999987653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=183.51 Aligned_cols=225 Identities=12% Similarity=0.013 Sum_probs=181.4
Q ss_pred CCCCHH--HHHHHHHHHHHc---CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccCh
Q 009045 147 MPKNAH--AHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEP 221 (546)
Q Consensus 147 ~p~~~~--~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (546)
.|.+.+ .++..|..+... +.+++|+.+|+++++++|+.. ..+..++.++..++... .....
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------------~a~~~La~~~~~~~~~g--~~~~~ 317 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------------APYCALAECYLSMAQMG--IFDKQ 317 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------------HHHHHHHHHHHHHHHcC--Ccccc
Confidence 444444 345566655443 347899999999999987651 22333333332222110 01256
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
+++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 380 (546)
+++++|.+......++.++. ..|++++|+..+++++... |+++..+..+|.++...|+
T Consensus 398 Al~l~P~~~~~~~~~~~~~~---------------------~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITY---------------------YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHhcCCCChhhHHHHHHHHH---------------------hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 99999998877666555555 6789999999999999875 7889999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+++|...+++.....|........++
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99999999998888777654444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-18 Score=178.15 Aligned_cols=353 Identities=11% Similarity=-0.005 Sum_probs=263.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
..-..|..+...+..+.+..+.|+++.|+..|+++++.+|.+. +.... +..++ ...|
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-----~av~d-------ll~l~-----------~~~G 82 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-----GQVDD-------WLQIA-----------GWAG 82 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-----hhHHH-------HHHHH-----------HHcC
Confidence 3456788999999999999999999999999999999987642 11111 11122 2335
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+.++|+.++++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++
T Consensus 83 ~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 83 RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 56999999999995455555566666889999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
...+|.+... ..++.++. ..++..+|+..++++++.+|++..++..+..++...|-..
T Consensus 163 ~~~dp~~~~~-l~layL~~---------------------~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 163 AERDPTVQNY-MTLSYLNR---------------------ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred cccCcchHHH-HHHHHHHH---------------------hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence 9999985543 33333332 5667767999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHH--HHHHHHHHHh----hhccCchhHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRY--AVAVSRIKDA----ERSQEPTEQLSWAGNEMASILREGDPVQI---EPPIAWAGFAA 453 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~--~l~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 453 (546)
.|.+..++--.........+. ..+...+..+ ....+.......+...+..++.......+ ....+....-.
T Consensus 221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 999777653322222211121 1111111111 11122333445555666666654333222 22334556667
Q ss_pred HHHhcccHHHHHHHHHhhc---cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhc
Q 009045 454 VQKTHHEVAAAFETEENEL---SKMEECAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLT 524 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~ 524 (546)
++...+++.+++..|+... .+.+..+....|..|+..++.++|+..|++++.-.| ........|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 7888999999999999855 355777888999999999999999999999988653 2334457788899999
Q ss_pred CChHHHHHHHHHHHHH
Q 009045 525 GDHRSSGKCLEKVLMV 540 (546)
Q Consensus 525 g~~~~A~~~~~~al~~ 540 (546)
+++++|..++++..+.
T Consensus 381 e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQ 396 (822)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999998874
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=164.99 Aligned_cols=372 Identities=17% Similarity=0.119 Sum_probs=265.9
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|+..+.-|++..++ ..|..+|.+.|.+---+..+... +...|.+.-.+.++++|.-+..|..+|..+.-+|
T Consensus 6 k~kgnaa~s~~d~~~ai-~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAI-RLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHhhcccccHHHHH-HHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34677788889999998 99999999999743333333222 3345555566778899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc---CCCc----------------------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS---GDNS---------------------------- 214 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~---------------------------- 214 (546)
+|++|+..|.+.++.+|++. ....++..++... ++..
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~------------~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNK------------QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred cHHHHHHHHHHHhhcCCchH------------HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 99999999999999987652 3334454444111 1110
Q ss_pred ---------cccccChhhHHHHHHHHHHHHh--------------cCcc---------------------cHHHHHHHHH
Q 009045 215 ---------LDKELEPEELEEILSKLKESMQ--------------SDTR---------------------QAVVWNTLGL 250 (546)
Q Consensus 215 ---------~~~~~~~~~~~~A~~~~~~al~--------------~~p~---------------------~~~~~~~l~~ 250 (546)
+..++....+..|.-.+..+-. ..|. -......+|.
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 0001111111111111111000 0110 0223556888
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 330 (546)
......++..|++.|.+++.++ .+...+.+.+.+|+..|.+.+++....++++.......-+..++..+.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r-------- 303 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR-------- 303 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH--------
Confidence 8888999999999999999999 8888899999999999999999998888887766555555555555542
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCChHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKAD--------------------------PKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
+|..+...++++.|+.+|.+++... |.-..--...|..++..|+|..|
T Consensus 304 ------~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 ------LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred ------hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 4667778888888888888877543 22233344568888999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
+..|.+++..+|+++. .|.+.+.+|..++.+..|
T Consensus 378 v~~YteAIkr~P~Da~----------------------------------------------lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDAR----------------------------------------------LYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHhcCCchhH----------------------------------------------HHHHHHHHHHHHhhHHHH
Confidence 9999999999988764 456666677777888888
Q ss_pred HHHHHh--hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 465 FETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 465 ~~~~~~--~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+..... .+++.....|+..|.++..+.+|++|++.|+++++.+|++..+...+..|+..+.......+.+++
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 877766 445666788999999999999999999999999999999999999999998865444444444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=169.53 Aligned_cols=304 Identities=15% Similarity=0.089 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.....|.+....|+++.|.+.+.++.+..|.+ .. .+...+.+ +...|+++.|..++.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~-------~~-----~~llaA~a-----------a~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP-------VL-----NLIKAAEA-----------AQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC-------HH-----HHHHHHHH-----------HHHCCCHHHHHHHHH
Confidence 44667888899999999999999998875532 11 11122222 245577799999999
Q ss_pred HHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 233 ESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 233 ~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
++.+..|++. .+....+.++...|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....+..
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999988875 466667999999999999999999999999999999999999999999999999999999987655544
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP----KAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
....+-.... .-....+..+++.+.+.++....| +++..+..++..+...|++++|...
T Consensus 223 ~~~~l~~~a~-----------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 223 EFADLEQKAE-----------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 3322111111 000133444556677888888777 5899999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
++++++..|++....+.+ .........++..+++..
T Consensus 286 l~~~l~~~pd~~~~~~~~--------------------------------------------l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 286 IFDGLKKLGDDRAISLPL--------------------------------------------CLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred HHHHHhhCCCcccchhHH--------------------------------------------HHHhhhcCCCChHHHHHH
Confidence 999999999886432110 000111122334455555
Q ss_pred HHhhcc--chhh--hHHhhHHHHHHHhccHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 468 EENELS--KMEE--CAGAGESAFLDQASAVNVAKECLL--AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 468 ~~~~l~--~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+++.+. |.+. .....+|.++.+.|++++|.++|+ ++++..|++.. +..+|.++.+.|+.++|.++|++++...
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 555443 4555 556689999999999999999999 68888897766 5599999999999999999999998876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=162.46 Aligned_cols=212 Identities=17% Similarity=0.246 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...-..+|.||.++|.+.+|.+.++.+++..| .++ .+..++.+|. +..+...|+..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~d------TfllLskvY~-----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPD------TFLLLSKVYQ-----------RIDQPERALLV 278 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chh------HHHHHHHHHH-----------HhccHHHHHHH
Confidence 34446799999999999999999999999754 233 2334444444 34556999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
|.+.++..|.+...+...++++..++++++|+++|+.+++.+|.+.++...+|.-|+--++.+-|+.+|++.+++.-.++
T Consensus 279 ~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 279 IGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP 358 (478)
T ss_pred HhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 009045 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
+.+.++|.+++ ..++++-++..|++++....+ -.++|+++|.+....|++.-|..+
T Consensus 359 eLf~NigLCC~---------------------yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 359 ELFCNIGLCCL---------------------YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred HHHhhHHHHHH---------------------hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 99999999988 788899999999999987542 578999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~ 407 (546)
|+-++..++++..++.+++.
T Consensus 418 frlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHHHhccCcchHHHHHhHHH
Confidence 99999999988765555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=172.57 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=214.7
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.+|..+.+-|..-.++ -.|+.++..+|.++.+|..+|.+ .-..++.+++++++++|+|.+++..||..|...|.
T Consensus 290 ~eG~~lm~nG~L~~A~-LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAA-LAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHhcCCchHHH-HHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4888999999977776 78999999999999999999998 55678899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc--ccHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT--RQAVV 244 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 244 (546)
-.+|+.++.+-|...|..... ..+..-...+. .........+..-.+.|-.+....| .++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l--------------~~a~~~~~~~~--~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHL--------------VSAGENEDFEN--TKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHHHhCccchhc--------------cccCccccccC--CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 999999999999875432110 00000000000 0012455667788888888888888 78999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
...||.+|...|+|++|+.+|+.||..+|++...|..||-.+..-.+..+|+..|.+|+++.|....+++++|..++
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m--- 509 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM--- 509 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCChHHHH
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
.+|.|++|+++|-.+|.+.+. +-.+|..|=.++..+++.+-+.
T Consensus 510 ------------------NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 510 ------------------NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ------------------hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999998665 1246666666677777666443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=175.27 Aligned_cols=233 Identities=20% Similarity=0.260 Sum_probs=171.7
Q ss_pred cccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 217 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+++.|++.+|.-+|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 374 (546)
.++.+-+...|........ ..-. .............+..-.+.|..+....| .++++...||.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a--~~~~------------~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSA--GENE------------DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHhCccchhcccc--Cccc------------cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 9999999887754322110 0000 00000000112224455667777777777 689999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
|...|+|++|+.+|+.+|...|++. ..|..||-.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~----------------------------------------------~lWNRLGAt 473 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDY----------------------------------------------LLWNRLGAT 473 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchH----------------------------------------------HHHHHhhHH
Confidence 9999999999999999999999875 345556655
Q ss_pred HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 455 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
+....+.++|+..|.+++. |...+++|++|.+++.+|.|++|+++|-.||.+.+.
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 5555555555555555332 444455555555555555555555555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=157.41 Aligned_cols=237 Identities=16% Similarity=0.098 Sum_probs=137.1
Q ss_pred ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
++..|.++-..++.++.-++.++.+.|.+-+..|++++|.+.|++++..+.....+++++|..+.
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e--------------- 535 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE--------------- 535 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH---------------
Confidence 44555555555555555555555555555555555555555555555555555555555554444
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
.+|+.++|+++|-+.-.+--+++++++.++.+|..+.+..+|++++.++..+-|+++..+..++..+-.+..+.
T Consensus 536 ------~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 536 ------ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ------HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 45555555555555444444455555555555555555555555555555555555544444433221111110
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh--ccchhhhHHhhHHHHHHHhccHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVN 494 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~g~~~ 494 (546)
. .+ ...-..-...|-+....-.++..|....-+++++.++.++ +.|....-...++.|+.+.|+|.
T Consensus 610 q----af--------q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 610 Q----AF--------QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred h----hh--------hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 0 00 0000011111223334445666677777788999999883 34444444558889999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 495 VAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 495 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+|...|+..-...|.+.+.+..|-++.-.+|-
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999888888766663
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=158.06 Aligned_cols=202 Identities=19% Similarity=0.206 Sum_probs=181.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..+..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|++.|++++...|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
. ..|++++|+..|++++... +.....+..+|.++...|++++|...+.+++..+|++
T Consensus 110 ~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 110 C---------------------QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred H---------------------HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7 8899999999999999853 4567789999999999999999999999999998876
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
...+.
T Consensus 169 ~~~~~--------------------------------------------------------------------------- 173 (234)
T TIGR02521 169 PESLL--------------------------------------------------------------------------- 173 (234)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 43322
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+|.++...|++++|+.+++++++..|.++..+..++.++...|+.++|..+.+.+...+
T Consensus 174 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 174 ---ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 233377788899999999999999989899999999999999999999999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=170.99 Aligned_cols=392 Identities=13% Similarity=0.073 Sum_probs=284.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
..|-+++..++....++..+|.+ ++.+|.++|.++.++|+.+++++-..+..|....+++.|....-++-+..|.
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 44556666666666666666666 5666666777777777777777777777777777777776664444443221
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
... ...|.. .|-+ |++.+++..|+..|+.+++.+|.+..+|..+|.+|...|++..|++
T Consensus 559 ---------~~~-k~nW~~-------rG~y----yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 559 ---------FAC-KENWVQ-------RGPY----YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred ---------HHH-Hhhhhh-------cccc----ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence 110 111222 3444 6888999999999999999999999999999999999999999999
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
.|.++..++|.+..+.+..+.+...+|+|.+|+..+...+............++.++.+. +..+.-
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~--------------akd~~~ 683 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD--------------AKDSAI 683 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--------------HHHHHH
Confidence 999999999999999999999999999999999999999988877777777888777643 223334
Q ss_pred hcCHHHHHHHHHHHHh-------cC-CCCHHHHHHHHHHHHH-----------------------cCCh------HHHHH
Q 009045 344 ASAVNVAKECLLAALK-------AD-PKAAHIWANLANAYYL-----------------------TGDH------RSSGK 386 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~-------~~-p~~~~~~~~l~~~~~~-----------------------~g~~------~~A~~ 386 (546)
.|-..+|..++++.++ .. -++.-.|..+|.+..- ++.. --|.+
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~ 763 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYE 763 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHH
Confidence 4444555555555443 22 2333444444433221 1111 12333
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHH
Q 009045 387 CLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFE 466 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 466 (546)
++-..+++... +..|++++...+.......+.......+...+.+.+.. ..++...|..+|.+ ...|++.-|..
T Consensus 764 c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-sg~gnva~aQH 837 (1238)
T KOG1127|consen 764 CGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-SGIGNVACAQH 837 (1238)
T ss_pred HhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh-hccchhhhhhh
Confidence 34333333222 56788888888887766666555555555555444443 34567889999998 56689999998
Q ss_pred HHHh--hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 467 TEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 467 ~~~~--~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.|.+ .+.+.....|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+.-++...|...-++.
T Consensus 838 CfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 838 CFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 8887 45577778899999999999999999999999999999999999999999999999999999988754443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-21 Score=175.27 Aligned_cols=254 Identities=19% Similarity=0.164 Sum_probs=107.3
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcC--CCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFG--VDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~--~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
+..+++.|+...++ ..+.+.+... |++...|...|.+ +...|.+.|++++..++.++..+..++.+ ...++
T Consensus 15 A~~~~~~~~~~~Al-~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKAL-EVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 55566777777776 6665544443 6666677767665 56777778888888888888888788777 67888
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcC--cccHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSD--TRQAVV 244 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 244 (546)
+++|+.+++++.+..++ +..+ .....+ +...++++++...++++.... +.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~-------~~~l------~~~l~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGD-------PRYL------LSALQL-----------YYRLGDYDEAEELLEKLEELPAAPDSARF 148 (280)
T ss_dssp --------------------------------------H------------HHHTT-HHHHHHHHHHHHH-T---T-HHH
T ss_pred ccccccccccccccccc-------cchh------hHHHHH-----------HHHHhHHHHHHHHHHHHHhccCCCCCHHH
Confidence 88888888887765332 1111 111111 234566788888888866544 567778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
|..+|.++.+.|++++|+.+|+++++++|++..++..++.++...|+++++.+.+....+..|.++..+..+|.++.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~--- 225 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL--- 225 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc---
Confidence 88888888888888888888888888888888888888888888888888888888877777777777777777777
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
..|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 226 ------------------~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 226 ------------------QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ------------------HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888998888888888888888888888888888888888888887653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=144.40 Aligned_cols=206 Identities=20% Similarity=0.220 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..+...||.-|+..|++..|...+++|++.+|+. ..+|..++.+|..+|.. +.|.+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------------~~a~~~~A~~Yq~~Ge~-----------~~A~e~ 91 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------------YLAHLVRAHYYQKLGEN-----------DLADES 91 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHHcCCh-----------hhHHHH
Confidence 5678899999999999999999999999998765 35667777777777666 999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
|++++.++|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999875 4456788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
++.....++...+ ..|++-.|..++++.....+-..+.+.....+-...|+-+.+-.+=
T Consensus 172 ~~~~~l~~a~~~~---------------------~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 172 FPPALLELARLHY---------------------KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred CChHHHHHHHHHH---------------------hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999988888887 8899999999999998888888888888888889999999888888
Q ss_pred HHHHhcCCCChh
Q 009045 389 EKAAKLEPNCMS 400 (546)
Q Consensus 389 ~~al~~~p~~~~ 400 (546)
.+..+..|....
T Consensus 231 ~qL~r~fP~s~e 242 (250)
T COG3063 231 AQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhCCCcHH
Confidence 888888887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=161.93 Aligned_cols=283 Identities=12% Similarity=0.040 Sum_probs=231.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++...+|.+|+..|..+++..|+++..|.+.+.+++..|+|++|.-..++.++++|.....+...+.++..+++..+|.+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc-----c-cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLA-----G-AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
.|+..- ++ ..+..+......... . ...-.-.+.|+...|++++|...--..+++++.+.++++..
T Consensus 139 ~~~~~~--------~~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 139 KLKSKQ--------AY-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred Hhhhhh--------hh-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 776211 00 000000000000000 0 00011135667799999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.+++..++.+.|+.+|++++.++|+.......... +..-..|...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~----------------------------------~k~le~~k~~ 255 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM----------------------------------PKKLEVKKER 255 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhh----------------------------------HHHHHHHHhh
Confidence 999999999999999999999999987654332211 1112467888
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhh------hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
|.-..+.|++.+|.+.|..++.-.+. ..+++.|.+..++|+..+|+..++.+++++|....++...|.|+..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997763332 447799999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcc
Q 009045 526 DHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~~ 543 (546)
+|++|++.|+++++.-.+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=141.88 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
..+...||.-|+..|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+++
T Consensus 115 ---------------------~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 115 ---------------------AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------------------hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 888999999999999984 344678899999999999999999999999999999876
Q ss_pred hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--hhh
Q 009045 400 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--MEE 477 (546)
Q Consensus 400 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~ 477 (546)
.... .++..+...|++..|...+...... ...
T Consensus 174 ~~~l----------------------------------------------~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A 207 (250)
T COG3063 174 PALL----------------------------------------------ELARLHYKAGDYAPARLYLERYQQRGGAQA 207 (250)
T ss_pred hHHH----------------------------------------------HHHHHHHhcccchHHHHHHHHHHhcccccH
Confidence 5443 3344445555555555555543221 122
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 513 (546)
..+.....+-...|+-+.+-++=.+.....|...+.
T Consensus 208 ~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 208 ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 223323334556666666666666666666665543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-17 Score=173.09 Aligned_cols=362 Identities=13% Similarity=0.065 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARK--MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..+.+.+....+. .| +...+..+..+|.+.|++++|...|++..+ | +. ..|..+...
T Consensus 140 ~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~---------~~----~t~n~li~~----- 198 (697)
T PLN03081 140 RCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R---------NL----ASWGTIIGG----- 198 (697)
T ss_pred HHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C---------Ce----eeHHHHHHH-----
Confidence 4556666666553 34 567777888888888888888888877643 1 11 112222222
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCc------------------------------------ccHHHHHHHHHHHHHc
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDT------------------------------------RQAVVWNTLGLILLKS 255 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p------------------------------------~~~~~~~~l~~~~~~~ 255 (546)
+.+.|++++|+..|+++++... .+..++..+...|.+.
T Consensus 199 ------~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 199 ------LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred ------HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 2344556777777777765322 1233455677788888
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCcc------
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSV------ 327 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~------ 327 (546)
|++++|...|++.. +.+...|..+...|.+.|++++|+..|++.... .| +..++..+...+...+.-.
T Consensus 273 g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence 89999988888753 346778888888999999999999998888654 33 3344555444443221111
Q ss_pred --------ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC
Q 009045 328 --------LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPN 397 (546)
Q Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 397 (546)
..+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|++.|++..+. .|+
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 11233444567788899999999999998754 35778999999999999999999999998764 454
Q ss_pred ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh
Q 009045 398 CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477 (546)
Q Consensus 398 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 477 (546)
... +..+.. ...... ....+..-+.. +.......| +...|..+...+.+.|++++|...+.+.....+.
T Consensus 426 ~~T-~~~ll~-a~~~~g-------~~~~a~~~f~~-m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 426 HVT-FLAVLS-ACRYSG-------LSEQGWEIFQS-MSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHH-HHHHHH-HHhcCC-------cHHHHHHHHHH-HHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 322 221111 111111 11111111212 221122222 2356889999999999999999999886555556
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
..|..+...+...|+++.|...+++.+++.|++...|..++.+|...|++++|.+.+++..+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 778889899999999999999999999999999999999999999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=152.96 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=174.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC
Q 009045 141 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 220 (546)
Q Consensus 141 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (546)
-+....-|+|...+..+|.++...|++.+|+..|+++..++|.. ......| +.++. .
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---------i~~MD~Y---a~LL~-----------~ 278 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---------VEAMDLY---AVLLG-----------Q 278 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---------hhhHHHH---HHHHH-----------h
Confidence 33344455666666666666666666666666666666553322 1111111 11111 2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.|+++.-...-...+..+.....-|+.-|..++..+++..|+.+-.++|..+|.+..++...|.++..+|+.++|+-.|+
T Consensus 279 eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 23334444444444444444455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-Hc
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYY-LT 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~-~~ 378 (546)
.+..+.|...+.|..+..+|+ ..|++.+|.-..+.+++.-|.++.++..+| .++. .-
T Consensus 359 ~Aq~Lap~rL~~Y~GL~hsYL---------------------A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 359 TAQMLAPYRLEIYRGLFHSYL---------------------AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred HHHhcchhhHHHHHHHHHHHH---------------------hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 555555555555555555554 555555555555555555555555555554 2222 22
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhc
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 458 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (546)
.--++|.+.+++++++.|.. ..+-..++.++...
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y----------------------------------------------~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIY----------------------------------------------TPAVNLIAELCQVE 451 (564)
T ss_pred hhHHHHHHHHHhhhccCCcc----------------------------------------------HHHHHHHHHHHHhh
Confidence 22345555555555555543 34556677777888
Q ss_pred ccHHHHHHHHHhhccchhh-hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 459 HEVAAAFETEENELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 459 ~~~~~A~~~~~~~l~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
|.+..++..+++.+...+. ..+..+|.++...+.+.+|+.+|..++.++|++..+.-.|-..-...
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 8888899998887765544 45668999999999999999999999999999988877776654443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=156.93 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH--HHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM--EQSAKCF 299 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~ 299 (546)
..++|+..+.++++++|.+..+|..++.++..+| ++++++..+.+++..+|++..+|...+.++..+|+. ++++.++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 3489999999999999999999999999999998 689999999999999999999999999999999874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT- 378 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~- 378 (546)
+++++.+|.+..+|..++.++. ..|+++++++++.++|+.+|.+..+|..++.++...
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~---------------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLR---------------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence 9999999999999999998887 788899999999999999999999999999998776
Q ss_pred --CCh----HHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 379 --GDH----RSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 379 --g~~----~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
|.+ ++++.+..+++..+|++..+|..+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 333 46888888999999998776655433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=155.41 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+..++.+|.++...|++++|+..++++++..|.. ...+..++.++ ...|++++|+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~-----------~~~~~~~~A~~ 86 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD------------YLAYLALALYY-----------QQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------HHHHHHHHHHH-----------HHcCCHHHHHH
Confidence 47889999999999999999999999999986543 13344455544 45566699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD--PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
.++++++..|.+..++..+|.++...|++++|+..|++++... +.....+..+|.++...|++++|...+.+++..+|
T Consensus 87 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 87 SFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999853 45677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
++...+..++.++. ..|++++|+..+++++...|.++..+..++.++...|+.++|..+
T Consensus 167 ~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 167 QRPESLLELAELYY---------------------LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred CChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99888888888877 899999999999999999888899999999999999999999999
Q ss_pred HHHHHhcCC
Q 009045 388 LEKAAKLEP 396 (546)
Q Consensus 388 ~~~al~~~p 396 (546)
.+.+....|
T Consensus 226 ~~~~~~~~~ 234 (234)
T TIGR02521 226 GAQLQKLFP 234 (234)
T ss_pred HHHHHhhCc
Confidence 888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-17 Score=157.90 Aligned_cols=304 Identities=11% Similarity=0.012 Sum_probs=226.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
...+..|......|++++|.+...++.+..+ .|.... ...+.+ ....|+++.|..+|
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-------~p~l~~-----llaA~a-----------A~~~g~~~~A~~~l 141 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-------QPVVNY-----LLAAEA-----------AQQRGDEARANQHL 141 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-------chHHHH-----HHHHHH-----------HHHCCCHHHHHHHH
Confidence 3356778888889999999977777655311 122211 111111 24677889999999
Q ss_pred HHHHhcCcccHH-HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 232 KESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 232 ~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
.++.+.+|++.. .....+.++...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+.+..+..+.+.
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 999999998754 3345599999999999999999999999999999999999999999999999999999998877655
Q ss_pred HHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 311 AALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 311 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
.....+- ..+... ........+-+...+.++..-+..|+++.++..++..+...|+.++|...++
T Consensus 222 ~~~~~l~~~a~~~l--------------~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 222 EHRAMLEQQAWIGL--------------MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4333111 111100 0000122334444555555545567799999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
++++..++ +... ...+. ...++.++++...+
T Consensus 288 ~~l~~~~~-~~l~----------------------------------------------~l~~~--l~~~~~~~al~~~e 318 (398)
T PRK10747 288 DGLKRQYD-ERLV----------------------------------------------LLIPR--LKTNNPEQLEKVLR 318 (398)
T ss_pred HHHhcCCC-HHHH----------------------------------------------HHHhh--ccCCChHHHHHHHH
Confidence 99995443 3211 11111 13367777777777
Q ss_pred hhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 470 NELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 470 ~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++ |.+...++.+|.++...+++++|.++|+++++..|++. .+..++.++.+.|+.++|..+|++++.+..
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 6444 55566788999999999999999999999999999865 467899999999999999999999998763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-17 Score=151.96 Aligned_cols=350 Identities=17% Similarity=0.097 Sum_probs=284.0
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
..|..+|+..|..-..|.....+ ....-+..+++++..-|+....|...+..++..|+...|...+.++++.+|.
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 56778888888766555543332 2244556889999999999999999999999999999999999999999776
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
++ .+|..-..+ .....+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.
T Consensus 617 se------------eiwlaavKl-----------e~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 617 SE------------EIWLAAVKL-----------EFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cH------------HHHHHHHHH-----------hhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHH
Confidence 42 222221111 35667889999999999987765 6788889999999999999999
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
.++.+++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-. +
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE---------------------k 731 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE---------------------K 731 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH---------------------H
Confidence 9999999999999999999999999999999999999999999999999998888776 7
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHH
Q 009045 344 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
.|..-.|...++++.-.+|++...|......-++.|+.+.|...+.++++..|++...|..-....- ...+..
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~-~~~rkT------ 804 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP-RPQRKT------ 804 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc-Ccccch------
Confidence 8899999999999999999999999999999999999999999999999999998766643322100 000000
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLL 501 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 501 (546)
.....+.. ...++.+....+..+....++++|...|.++++ +...++|..+-..+.+.|.-++-.+.+.
T Consensus 805 -----ks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 805 -----KSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred -----HHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 01111111 235678999999999999999999999999665 6666777766678889999999999999
Q ss_pred HHHHhCCCCHHHHHHHHH
Q 009045 502 AALKADPKAAHIWANLAN 519 (546)
Q Consensus 502 ~al~~~p~~~~~~~~lg~ 519 (546)
++..-.|.+...|.....
T Consensus 876 ~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHhccCCCCCcHHHHHhh
Confidence 999999999988876654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-17 Score=153.28 Aligned_cols=363 Identities=14% Similarity=0.136 Sum_probs=247.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+--+..+.+++..|.+++.+...|..+..+|+-++|..+.+.++..++.+ .-+|+.+|.++
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------~vCwHv~gl~~------ 85 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------HVCWHVLGLLQ------ 85 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc------------chhHHHHHHHH------
Confidence 444566778999999999999999999999999999999999999976654 24566667664
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
....+|++|+++|+.|+.++|+|..+|.-++.+..++++++.....-.+.+++.|.....|...+..+...|++.
T Consensus 86 -----R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 86 -----RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred -----hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 294 QSAKCFQDLILKD---QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 294 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
.|....+...+.. |.....-.....++. ..++...|.+++|++.+..--..--+.......
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~----------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQ----------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHH----------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 9999988877655 333322222222222 233446666666666655433333333445556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHhhhcc-----------C-------------chhHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI--KDAERSQ-----------E-------------PTEQLS 424 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l--~~~~~~~-----------~-------------~~~~~~ 424 (546)
.+.++..++++++|...|...+..+|++...+..+-.... ....... . ....+.
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 6777777777777777777777777777654443322111 0000000 0 000000
Q ss_pred HHH-HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc---HHHHHHHHHhhccch------------hh----hHHhhHH
Q 009045 425 WAG-NEMASILREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELSKM------------EE----CAGAGES 484 (546)
Q Consensus 425 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~~------------~~----~~~~~la 484 (546)
... ..+...+..+.+ .+...+-..|..... .++-+..|...+... ++ ..++.++
T Consensus 305 ~~vdkyL~~~l~Kg~p------~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVP------SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred HHHHHHHHHHhhcCCC------chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 000 111112222111 222222222222111 112222222222211 11 3356788
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+...|+++.|..++..|+...|.-++.+...|+++...|++++|..+++++-++-
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999887653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=152.03 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.+|...+.+++.++|.+..+|..+|.++..+| ++++++.+++++++.+|++ ..+|+..+.++..+|.
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------------yqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------------YQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------------hHHhHHHHHHHHHcCc
Confidence 88999999999999999999999999999999 6899999999999998765 2345555555544443
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc---
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--- 289 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 289 (546)
. .+++++.++.++++.+|++..+|..++.++...|++++|++++.++|+.+|.+..+|..++.+....
T Consensus 122 ~---------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 122 D---------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred h---------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 1 1367899999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 290 GDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 290 g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
|.+ ++++.+..+++..+|++..+|..++.++..... ..++..+|++.+.+++...|.++
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-----------------ALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-----------------ccccchhHHHHHHHhhcccCCcH
Confidence 333 578889999999999999999999988862100 13566789999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 009045 366 HIWANLANAYYLT 378 (546)
Q Consensus 366 ~~~~~l~~~~~~~ 378 (546)
.++..|+.+|...
T Consensus 256 ~al~~l~d~~~~~ 268 (320)
T PLN02789 256 FALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-17 Score=156.89 Aligned_cols=268 Identities=11% Similarity=0.040 Sum_probs=186.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhh
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAALLLCKY 324 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~ 324 (546)
...|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. ......+.++.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l--- 164 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL--- 164 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH---
Confidence 44566667778888888888777777777666777777777778888888888888777777764 34444566555
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
..|+++.|+..+++.++..|+++.++..++.++...|++++|...+.+..+....++.....
T Consensus 165 ------------------~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 165 ------------------AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred ------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 77778888888888888888888777888888888888888888877777664443332211
Q ss_pred H----HHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhH-
Q 009045 405 V----AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA- 479 (546)
Q Consensus 405 l----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~- 479 (546)
+ ....+..... ... ...+...........++++.++..++..+...|++++|+..+.+.++..+...
T Consensus 227 l~~~a~~~~l~~~~~-~~~-------~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 227 LEQKAEIGLLDEAMA-DEG-------IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHH-hcC-------HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 1 1111111110 000 11122222222222235678999999999999999999999999887444333
Q ss_pred ---HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCChHHHHHHHH--HHHHHhc
Q 009045 480 ---GAGESAFLDQASAVNVAKECLLAALKADPKAA--HIWANLANAYYLTGDHRSSGKCLE--KVLMVYC 542 (546)
Q Consensus 480 ---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~ 542 (546)
...........++.+.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 12222234456788999999999999999999 899999999999999999999999 4665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=163.78 Aligned_cols=361 Identities=17% Similarity=0.133 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...+-.+|-++++++|..+.++..||.+|...-+...|.++|++|.++++... ..+...+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda------------eaaaa~a-------- 533 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA------------EAAAASA-------- 533 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh------------hhHHHHH--------
Confidence 35566688999999999999999999999999999999999999999976541 1111222
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
+.+.+..+++.|...+-.+-+..|.. ...|..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|
T Consensus 534 ---dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 534 ---DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred ---HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 22467778899999977777776643 3466779999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------ 364 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 364 (546)
++..|++.|.++..++|.+....+..+.+.. ..|.|.+|+..+...+......
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec---------------------d~GkYkeald~l~~ii~~~s~e~~~q~g 669 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMEC---------------------DNGKYKEALDALGLIIYAFSLERTGQNG 669 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999988887777766 8899999999999888765443
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------C-CCChhHHHHHHHHHHH--Hhh-----------------h-
Q 009045 365 -AHIWANLANAYYLTGDHRSSGKCLEKAAKL-------E-PNCMSTRYAVAVSRIK--DAE-----------------R- 415 (546)
Q Consensus 365 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~-p~~~~~~~~l~~~~l~--~~~-----------------~- 415 (546)
++.+.+++..+...|=+.+|..++++.++. . -++...|..++..... +.. .
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~ 749 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT 749 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 445555555555666666777777666543 2 2222223222211110 000 0
Q ss_pred -ccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh--------cccHHHHHHHHHhhcc--chhhhHHhhHH
Q 009045 416 -SQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT--------HHEVAAAFETEENELS--KMEECAGAGES 484 (546)
Q Consensus 416 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~l~--~~~~~~~~~la 484 (546)
.....+-+....+.....+.. ...+..|+++|..|.. +.+...|+..+.+++. ..+...|..||
T Consensus 750 ~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLG 824 (1238)
T KOG1127|consen 750 GALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALG 824 (1238)
T ss_pred ccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000001111111111111 1235679999988765 2244578888888555 56667788898
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++.|...|.++..+.|.
T Consensus 825 Vl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 825 VL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred Hh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 88 66689999999999999999999999999999999999999999999998877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=153.11 Aligned_cols=315 Identities=13% Similarity=0.070 Sum_probs=218.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
||+.+.++..+|.++...|+.+.|...+.++.+..+.+.. . .......+.. +...|++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~e~~~~~a~~-----------~~~~g~~~~ 61 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT------E---RERAHVEALS-----------AWIAGDLPK 61 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC------H---HHHHHHHHHH-----------HHHcCCHHH
Confidence 7999999999999999999999999999999988664311 1 1112222322 245567799
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGR----LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
|...++++++.+|++..++.. +..+...|+ ...+.+.+......+|....++..+|.++..+|++++|+..++++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999887775 555555544 444444444444567777888889999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHc
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----HIWANLANAYYLT 378 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~ 378 (546)
+++.|++...+..++.++. ..|++++|+.++++++...|..+ ..+..+|.++...
T Consensus 141 l~~~p~~~~~~~~la~i~~---------------------~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLE---------------------MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HhhCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 9999999999888888887 89999999999999999877432 3567899999999
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHH--HH-HHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRY--AV-AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 455 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~--~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (546)
|++++|+..|++++...|....... .. ............... .-|-.+....
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------------------------~~w~~~~~~~ 254 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG-------------------------DRWEDLADYA 254 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH-------------------------HHHHHHHHHH
Confidence 9999999999999876663221111 11 111111100001000 1111111000
Q ss_pred HhcccHHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcC
Q 009045 456 KTHHEVAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTG 525 (546)
Q Consensus 456 ~~~~~~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g 525 (546)
..... ..........+.++...|+.++|...++........ ........+.+++..|
T Consensus 255 -------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 255 -------------AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred -------------HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 00000 000111123445677777888888877776553322 2556678899999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 009045 526 DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~ 541 (546)
++++|+..+..++.+.
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-15 Score=158.73 Aligned_cols=347 Identities=12% Similarity=0.051 Sum_probs=257.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..|...|..... .+...|..+-..+.+.|++++|...|++..+.... |+. ..+..+...|
T Consensus 423 ~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-------pD~----~tynsLI~~y------ 482 (1060)
T PLN03218 423 KEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-------ADC----KLYTTLISTC------ 482 (1060)
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-------CCH----HHHHHHHHHH------
Confidence 455555544432 46778888889999999999999999998876432 222 1222222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcC
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g 290 (546)
.+.|++++|...|+++.+... .+...|..+...|.+.|++++|+..|...... .| +...|..+...|.+.|
T Consensus 483 -----~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 483 -----AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSG 556 (1060)
T ss_pred -----HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC
Confidence 355667999999999987643 36789999999999999999999999998765 34 4778999999999999
Q ss_pred CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCH
Q 009045 291 DMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 365 (546)
++++|.+.|++.... .|+ ...+..+...|. +.|++++|.+.|+.+.+.. +.+.
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~---------------------k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA---------------------NAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHcCCCCCh
Confidence 999999999998763 344 445655655555 8999999999999999876 4478
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 443 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (546)
..|..+...|.+.|++++|+..|++..+. .|+ ...+..+.. .+.... .+..+..-+......+. ..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~-a~~k~G-------~~eeA~~l~~eM~k~G~---~p 682 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVD-VAGHAG-------DLDKAFEILQDARKQGI---KL 682 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH-HHHhCC-------CHHHHHHHHHHHHHcCC---CC
Confidence 89999999999999999999999999876 454 222222222 111111 11222222222222221 23
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 009045 444 PPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLA 518 (546)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 518 (546)
+...|..+...|.+.|++++|...|..... ..+...|..+...|.+.|++++|++.|++.... .| +..+|..+-
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 456899999999999999999999987543 334567889999999999999999999998764 34 466778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+.+.|++++|..+|.++++..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999988754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=137.69 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=189.0
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
+.++|.+.|..+++.+|...+++..||++|...|..+.|+..-+..++. |++... ....+...+|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------pdlT~~-----qr~lAl~qL~ 114 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------PDLTFE-----QRLLALQQLG 114 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------CCCchH-----HHHHHHHHHH
Confidence 6799999999999999999999999999999999999999998887763 333211 1222334455
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHH
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAY 286 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 286 (546)
+. |+..|-++.|...|...++...--..++-.|..+|....+|++|++.-++..++.++. +..+..|+..+
T Consensus 115 ~D----ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 115 RD----YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HH----HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 55 7788888999999998887655556788889999999999999999999988887754 45677888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-H
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-A 365 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 365 (546)
....+.+.|+..+.++++.+|++..+-+.+|.+.. ..|+|+.|++.++.+++.+|+. +
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~---------------------~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVEL---------------------AKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH---------------------hccchHHHHHHHHHHHHhChHHHH
Confidence 88899999999999999999999888888887777 8899999999999999998884 5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++.-.|..+|..+|+.++.+..+.++.+..+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 677888899999999999999999998887764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=141.92 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=161.5
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++.+|+..|+++.-++|......-..|.++...|+++.-.......+.++.....-|+--+.+.+..+++..|+.+-+++
T Consensus 247 dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555554444444555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
++.+|.+..+++..|.++. +.|+.++|+-.|+.+..+.|...+.|..|-.+|...|++.
T Consensus 327 I~~~~r~~~alilKG~lL~---------------------~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLI---------------------ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hccCcccchHHHhccHHHH---------------------hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 5555555555555554444 5555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH-HH-HHhccc
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA-AV-QKTHHE 460 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~ 460 (546)
+|...-+.+++..|.+...+. .+| .+ .....-
T Consensus 386 EA~~~An~~~~~~~~sA~~Lt----------------------------------------------L~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLT----------------------------------------------LFGTLVLFPDPRM 419 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhh----------------------------------------------hhcceeeccCchh
Confidence 555555555555555443332 222 11 122234
Q ss_pred HHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 461 VAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 461 ~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
-++|..++.+.+. |....+...+|.++...|.+++++..+++.+...|++ ..+..||.++...+.+++|+++|..|+
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5788888888665 5555778889999999999999999999999999875 589999999999999999999999999
Q ss_pred HHhccc
Q 009045 539 MVYCSS 544 (546)
Q Consensus 539 ~~~~~~ 544 (546)
.+-|.+
T Consensus 499 r~dP~~ 504 (564)
T KOG1174|consen 499 RQDPKS 504 (564)
T ss_pred hcCccc
Confidence 987654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-15 Score=134.11 Aligned_cols=406 Identities=13% Similarity=0.057 Sum_probs=278.5
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+.|+..|..+.-+...|...|.. +..+|...|+++|..+..+...|...+.+-++......|...+.+|+.+.|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 56666666666555566655555 4577888999999999999999999999999999999999999999998664
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
- -..|+.....-..+|+. ..|...|++-++-.|+ ..+|......-.+.+..+.|..
T Consensus 140 V------------dqlWyKY~ymEE~LgNi-----------~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 140 V------------DQLWYKYIYMEEMLGNI-----------AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred H------------HHHHHHHHHHHHHhccc-----------HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH
Confidence 2 13344444443444444 8888888888888775 5677777777777778888888
Q ss_pred HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhhCccccc-------ccccc
Q 009045 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLLCKYGSVLAG-------AGANT 335 (546)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~~~-------~~~~~ 335 (546)
.|++-+-.+|+ ...|...+..-.+.|+..-|...|++|+....++...- ...+.+......+...- +....
T Consensus 196 IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 196 IYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887777765 66677777777777777777777777776554433221 11111111000000000 00000
Q ss_pred ----------ccchHHHhhcC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 336 ----------GEGACLDQASA---VNVAK-----ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 336 ----------~~~~~~~~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..-....+-|+ .++++ -.|++.++.+|.+.++|+..-.+-...|+.+.-.+.|++++.--|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 00001112232 22332 2466778889999999999999999999999999999999987775
Q ss_pred ChhHHH--HHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch
Q 009045 398 CMSTRY--AVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM 475 (546)
Q Consensus 398 ~~~~~~--~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 475 (546)
...-.+ ......++-+....-..+.......-....+..........+.+|...+.....+.+...|...+..++...
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c 434 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC 434 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC
Confidence 432211 111111111111111122233333444455565666667888999999999999999999999999988866
Q ss_pred hhhHHh-hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 476 EECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 476 ~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+..-.+ +.-.+-.++++++.+...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|++
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 664443 5556677899999999999999999999999999999999999999999999998875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=153.17 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=198.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 306 (546)
..|....+...++..|..+|+|++|+..++.++.. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999998 55556666779999999999999999999999763
Q ss_pred ------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 009045 307 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 372 (546)
Q Consensus 307 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 372 (546)
|.-..++.+|+.+|. ..|++++|..++++++++. |.-...+..++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~---------------------~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYY---------------------KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHh---------------------ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 333445666666665 9999999999999999873 33456788899
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++..++++++|+.++++++++.-+-+ ....+..+..+.++|
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~--------------------------------------g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAP--------------------------------------GEDNVNLAKIYANLA 374 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhc--------------------------------------cccchHHHHHHHHHH
Confidence 999999999999999999887643111 001122345789999
Q ss_pred HHHHhcccHHHHHHHHHhhccch----------hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKM----------EECAGAGESAFLDQASAVNVAKECLLAALKA-------DPKAAHIWA 515 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~ 515 (546)
.+|..+|++.+|...+.+++... ...+++.+|..|.+.+++.+|...|..++.+ .|+-...+.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999866522 2355779999999999999999999888764 344567889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
+||.+|..+|+++.|+++.++++..
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998854
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-14 Score=136.45 Aligned_cols=384 Identities=13% Similarity=0.090 Sum_probs=272.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+..+..|...|.+...+..+|.. +...|....+..++.|+.+...|+.+|.++....+|++|+++|+.|+.+.|+
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 55567788899999999988887 5667777888899999999999999999999999999999999999999776
Q ss_pred cchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHH
Q 009045 184 CEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263 (546)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 263 (546)
+ ..++..++.+...+ ++++.....-.+.++..|..-..|...+..+...|++..|..
T Consensus 108 N------------~qilrDlslLQ~Qm-----------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 108 N------------LQILRDLSLLQIQM-----------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred c------------HHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 24555666655444 555888888899999999999999999999999999999999
Q ss_pred HHHhhHhcC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 264 VLSSLLAVD---PNN-----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 264 ~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
..+...+.. |.. .........+..+.|.+++|.+.+..--.. ....++....
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~-------------- 224 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEET-------------- 224 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhh--------------
Confidence 888776654 332 345556667777888888887776553222 1222222221
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCCChhHHH-HH--------
Q 009045 336 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRY-AV-------- 405 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~-~l-------- 405 (546)
.|.++.+++++++|+..|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|....... .+
T Consensus 225 -ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 225 -KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred -HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 2455559999999999999999999999999988888886333444444 556555554443321110 00
Q ss_pred ---HHHHHHHh---------------hhccCchhHHHHHHHHHHHHHhcCCCC--------CCCcHHHH--HHHHHHHHh
Q 009045 406 ---AVSRIKDA---------------ERSQEPTEQLSWAGNEMASILREGDPV--------QIEPPIAW--AGFAAVQKT 457 (546)
Q Consensus 406 ---~~~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~l~~~~~~ 457 (546)
....+... .+.......+......+...+...... .+..+.+| +.++..+..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 00011100 011011111122222222233222111 13344445 578888899
Q ss_pred cccHHHHHHHHHhhccchhh--hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 458 HHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.|+++.|......+++-.+. +.+...|.++...|++++|..++..+.++|-.+..+-..-|.-..+.++.++|.+...
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999999885544 6677889999999999999999999999987666555567777788888888887654
Q ss_pred H
Q 009045 536 K 536 (546)
Q Consensus 536 ~ 536 (546)
+
T Consensus 464 k 464 (700)
T KOG1156|consen 464 K 464 (700)
T ss_pred H
Confidence 4
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=146.26 Aligned_cols=264 Identities=17% Similarity=0.129 Sum_probs=199.1
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
.++.|...+..+++..|+++..|...+.+++..|+|++|....++.+++.|... . .+.+.+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~------------k-------~~~r~~ 124 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS------------K-------GQLREG 124 (486)
T ss_pred hHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc------------c-------cccchh
Confidence 348888899999999999999999999999999999999999999998855421 1 222333
Q ss_pred CCccccccChhhHHHHHHHHHHHH-----hc-------------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC
Q 009045 212 DNSLDKELEPEELEEILSKLKESM-----QS-------------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 273 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al-----~~-------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 273 (546)
+. +...++..+|...++..- .. .|....+....+.|+...|++++|...--..+++++
T Consensus 125 ~c----~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 125 QC----HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred hh----hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 33 445555677776665221 00 122234555678888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+.++++..|.+++..++.+.|+..|++++.++|++..+-...-..-. +..+...|.-..+.|++.+|.++
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~---------le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK---------LEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH---------HHHHHhhhhhHhhccchhHHHHH
Confidence 999999999999999999999999999999999987765432222111 33445577888888888888888
Q ss_pred HHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 354 LLAALKADPK----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 354 ~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
|..+|.++|+ ++..|.+++.+...+|+..+|+...+.++.+++...
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi------------------------------ 321 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI------------------------------ 321 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH------------------------------
Confidence 8888888887 456788888888888888888888888888887532
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
.++...|.++...+++++|++.|.+++.
T Consensus 322 ----------------kall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 322 ----------------KALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777778888888887777554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-15 Score=145.91 Aligned_cols=269 Identities=13% Similarity=0.064 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL-GIAYFQSGDMEQSAKCFQDLILKDQNHPAAL-INYAALLL 321 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~ 321 (546)
..+..|.+....|+|++|.+.+.+.-+..+ ++..++.+ +.+....|+++.|..+|.++.+..|++.... ...+.++.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345667777788999999988887666533 34555555 5566999999999999999999999886443 23355555
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
..|++++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.++..
T Consensus 165 ---------------------~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 ---------------------ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred ---------------------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 89999999999999999999999999999999999999999999999998877765443
Q ss_pred HHH---HHHHH-HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh
Q 009045 402 RYA---VAVSR-IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477 (546)
Q Consensus 402 ~~~---l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 477 (546)
... .+... +...... ... ..+...........++++.+...++..+...|+.++|.....+.++....
T Consensus 224 ~~~l~~~a~~~l~~~~~~~-~~~-------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~ 295 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMAD-QGS-------EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCH-------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 221 11111 1111111 111 12222333333334677889999999999999999999999998773322
Q ss_pred hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 478 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
....+.......++.++++..+++.++.+|+++..+..+|.++...|++++|.++|+++++.-|+
T Consensus 296 -~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 296 -ERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred -HHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 21111123335599999999999999999999999999999999999999999999999988654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-15 Score=159.38 Aligned_cols=303 Identities=10% Similarity=0.028 Sum_probs=215.6
Q ss_pred ChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
..|++++|...+..+++... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 44566777777777766533 3456777888899999999999999988654 3567889999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCc--------------cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGS--------------VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
|++.....+.+...+..+...+...+.- ...+......+-..|.+.|++++|...|+.. +.+
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d 553 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD 553 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC
Confidence 9998754333333333332222211000 0011222234557888999999999999886 557
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...|..+...|...|+.++|+..|++..+. .|+.......+. ...... ....+...+. .+.....+.|
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~--a~~~~g-------~v~ea~~~f~-~M~~~~gi~P 623 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC--ACSRSG-------MVTQGLEYFH-SMEEKYSITP 623 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH--HHhhcC-------hHHHHHHHHH-HHHHHhCCCC
Confidence 889999999999999999999999998874 565443222221 111111 1111211222 2221222333
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 522 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 522 (546)
+ ...|..+...+.+.|++++|...+++.--..+...|..+-..+...|+.+.+....+++++++|++...+..++.+|.
T Consensus 624 ~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 624 N-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred c-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 3 467899999999999999999999985434445667777777888899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHH
Q 009045 523 LTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~ 540 (546)
..|++++|.+..+...+.
T Consensus 703 ~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 703 DAGKWDEVARVRKTMREN 720 (857)
T ss_pred HCCChHHHHHHHHHHHHc
Confidence 999999999998877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-16 Score=149.32 Aligned_cols=255 Identities=19% Similarity=0.208 Sum_probs=186.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.-..+...+|..|..+|+|++|+..++++++..-+ ..|
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k------------------~~G--------------------- 234 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEK------------------TSG--------------------- 234 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------------------ccC---------------------
Confidence 35777778888999999999999999999999886100 000
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...|.-......+|.+|..++++++|+..|++++.+ +|.-+.++.+||.+|...|++++|..
T Consensus 235 ----------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 235 ----------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred ----------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence 012333344447999999999999999999999986 44456789999999999999999999
Q ss_pred HHHHHHhhCCC-----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCC
Q 009045 298 CFQDLILKDQN-----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKA 364 (546)
Q Consensus 298 ~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~ 364 (546)
++++++.+... .+.+-..+ .+++.++...+++++|+.++++++++. +.-
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l------------------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQL------------------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHH------------------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 99999976432 22211111 123444558999999999999998863 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
+..+.+||.+|..+|++++|.++|++++.+...... ......
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--------------------------------------~~~~~~ 408 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--------------------------------------KKDYGV 408 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--------------------------------------CcChhh
Confidence 678999999999999999999999999987542211 001112
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhcc------chh---hhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELS------KME---ECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...+..+|..+...+.+.+|...|....+ +.. ...+.+||.+|..+|++++|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23456677777777777777776665333 222 24567999999999999999999999884
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-14 Score=150.32 Aligned_cols=346 Identities=12% Similarity=0.085 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..|.+.|++....+. .+...+..+...+.+.|..++|+.+|+.... |+.. .+..+...
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----------pd~~----Tyn~LL~a----- 446 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----------PTLS----TFNMLMSV----- 446 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----------CCHH----HHHHHHHH-----
Confidence 555556666555442 2333334455556667777777776655432 1111 11111111
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHc
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQS 289 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 289 (546)
+...|++++|...|+++.+... .+...|..+...|.+.|++++|.+.|+++.+... -+...|..+...|.+.
T Consensus 447 ------~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 447 ------CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred ------HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 2355677999999999887643 3567888999999999999999999999987643 2678899999999999
Q ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCC
Q 009045 290 GDMEQSAKCFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPK 363 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~ 363 (546)
|++++|+..|++..... | +...|..+...+. +.|++++|.+.|.+.... .|+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~---------------------k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG---------------------QSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999987643 4 3556666666665 889999999999999763 444
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...|..+...|.+.|++++|.+.|+++.+.+.. +...+..+.. .+..... +..+..-+......+ ..|
T Consensus 579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~-ay~k~G~-------~deAl~lf~eM~~~G--v~P 647 (1060)
T PLN03218 579 -HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-SCSQKGD-------WDFALSIYDDMKKKG--VKP 647 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH-HHHhcCC-------HHHHHHHHHHHHHcC--CCC
Confidence 678888999999999999999999999987633 3333333322 2222221 222222222333222 223
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANL 517 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 517 (546)
+...|..+...+...|++++|+..+..... ..+...+..+...|.+.|++++|+..|++..+. .| +...|..+
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 356789999999999999999999998665 334567888999999999999999999998764 44 56789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHH
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~ 540 (546)
...|.+.|++++|.+.|++..+.
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-15 Score=128.85 Aligned_cols=250 Identities=18% Similarity=0.192 Sum_probs=113.2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHHHHcCCHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A 295 (546)
.++.++|+..|..+++.+|...++.+.||.+|.+.|..+.|+..-+..++ .|+. .-+...||.-|+..|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34444444444444444444444444444444444444444444433332 2221 22344444444444444444
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWAN 370 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~ 370 (546)
...|........--..+...+..+|. ...+|++|++..++..++.++. +..+..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ---------------------~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQ---------------------ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHH---------------------HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 44444444333333333333333333 4444444444444444444431 223444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 450 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (546)
++..+....+.+.|+..+.++++.+|++. .+-..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cv----------------------------------------------RAsi~ 219 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCV----------------------------------------------RASII 219 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccce----------------------------------------------ehhhh
Confidence 44444444444444444444444444432 23334
Q ss_pred HHHHHHhcccHHHHHHHHHhhccchhh---hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 451 FAAVQKTHHEVAAAFETEENELSKMEE---CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 451 l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
+|.+....|++++|++.+...+..++. .+.-.|..+|.+.|+.++.+.++.++.+..++ +++...++..-....-.
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGI 298 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhCh
Confidence 555555555555555555554443332 23334445555555555555555555555443 23333444444444444
Q ss_pred HHHHHHHHHHHH
Q 009045 528 RSSGKCLEKVLM 539 (546)
Q Consensus 528 ~~A~~~~~~al~ 539 (546)
+.|..++.+-+.
T Consensus 299 ~~Aq~~l~~Ql~ 310 (389)
T COG2956 299 DAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=126.81 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
...|+++++.+|++ ++.+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788888888875 556888888899999999999999999998889999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+++.+++++|.++. ..|++++|+..|++++++.|+++..+..+|.+....
T Consensus 90 ~~~~a~~~lg~~l~---------------------~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLK---------------------MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88888888888887 788888899999888888888888888888776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-14 Score=134.51 Aligned_cols=369 Identities=14% Similarity=0.057 Sum_probs=263.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..+.+.|++++..--...+.|+.++.+|...|.-..|+...+..+...|... .+.. +.. ....+
T Consensus 340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps----~~s~--~Lm---asklc------- 403 (799)
T KOG4162|consen 340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS----DISV--LLM---ASKLC------- 403 (799)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC----cchH--HHH---HHHHH-------
Confidence 4455566666666666677777777777777777777777777766542110 1111 001 11111
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHc-----------CChHHHHHHHHhhHhcCCCChH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT-----RQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLAVDPNNCD 277 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~ 277 (546)
.-+.+..++++.+..+++.... -.+.++..+|.+|..+ ....++++.++++++.+|+|+.
T Consensus 404 ----~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 404 ----IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred ----HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 1245666999999999987321 1255778888887543 2467899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
+.+.++.-|..+++.+.|....++++++ ..++..+|..++.++. ..+++.+|+.....
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS---------------------a~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS---------------------AQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh---------------------hhhhhHHHHHHHHH
Confidence 9999999999999999999999999999 5667888999998887 88999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh--------hccCchh---HHHH
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE--------RSQEPTE---QLSW 425 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~--------~~~~~~~---~~~~ 425 (546)
++.-.|+|.........+-...++.++|+..+...+.+-.....+...++.....+.. ...++.. .+..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9999999888777777788889999999999988887655333333222221111000 0001111 1111
Q ss_pred HHHHHHHHHh-----cCCCCCCC-------cHHHHHHHHHHHHhcccHHHHHHHHHh--hccchhhhHHhhHHHHHHHhc
Q 009045 426 AGNEMASILR-----EGDPVQIE-------PPIAWAGFAAVQKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQAS 491 (546)
Q Consensus 426 ~~~~~~~~~~-----~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~--~l~~~~~~~~~~la~~~~~~g 491 (546)
....-.+.+. ......+. ....|...+..+...+..+++...+.+ .+.+.....|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 1110001111 00001111 234688889999999999999877776 445666788899999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHhcc
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK--CLEKVLMVYCS 543 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~ 543 (546)
++.+|...|..++.++|+++.....+|.++...|+..-|.. .+..++++-+.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999988888 88888887543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=133.90 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=134.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.++..+..++.+|..+...|++++|+..|++++...|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----------------------------------------- 66 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS----------------------------------------- 66 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------------------------------
Confidence 345678889999999999999999999998888875532
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChH---HHHHHHHHHHHc--------CCHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD---CIGNLGIAYFQS--------GDMEQ 294 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------g~~~~ 294 (546)
|....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++
T Consensus 67 -------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 133 (235)
T TIGR03302 67 -------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAARE 133 (235)
T ss_pred -------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 111245566666666666666666666666666665554 466666666654 56677
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWANL 371 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 371 (546)
|++.|++++..+|++...+..+..+..... ........+|.++...|++.+|+..|+++++..|+ .+.++..+
T Consensus 134 A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 134 AFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 777777777777766544322221111000 00011124566777999999999999999999776 46899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
|.++..+|++++|+.+++......|+
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-15 Score=132.19 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=127.5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---H
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---A 312 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 312 (546)
+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455666666666666666666666666666666543 35566666666666666666666666666665554 2
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
++.+|.++. .. ++.++...|++++|+..|++++
T Consensus 110 ~~~~g~~~~---------------------~~--------------------------~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 110 YYLRGLSNY---------------------NQ--------------------------IDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHH---------------------Hh--------------------------cccccCCHHHHHHHHHHHHHHH
Confidence 333333332 11 1112333478899999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
..+|++...+..+... +.....
T Consensus 143 ~~~p~~~~~~~a~~~~-------------------------------------------~~~~~~--------------- 164 (235)
T TIGR03302 143 RRYPNSEYAPDAKKRM-------------------------------------------DYLRNR--------------- 164 (235)
T ss_pred HHCCCChhHHHHHHHH-------------------------------------------HHHHHH---------------
Confidence 9999876544222110 000000
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.....+.+|..+...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.....++
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01122356678999999999999999999997764 68999999999999999999999988776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-14 Score=145.85 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 134 SREEKGLVHVARKMP--KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
..|.+.|.......+ -+..++..+..++.+.++++.|...+....+... .|+. ..+..+...
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~-------~~~~----~~~n~Li~~----- 167 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF-------EPDQ----YMMNRVLLM----- 167 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------Ccch----HHHHHHHHH-----
Confidence 667777777765432 4678888999999999999999999998887532 2221 122233333
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C---------------
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--N--------------- 274 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~--------------- 274 (546)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++.++... +
T Consensus 168 ------y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 168 ------HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred ------HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 3456777999999999864 3 567899999999999999999999999876532 1
Q ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 275 -------------------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 275 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-------------- 301 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYA-------------- 301 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHH--------------
Confidence 22334556677777778888877777643 345556666666555
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 336 GEGACLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
+.|++++|++.|++..+.. .-+...+..+..++...|++++|...+..+++.
T Consensus 302 -------~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 302 -------LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred -------hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 5555566666555554421 112444555555555555555555555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-12 Score=118.54 Aligned_cols=409 Identities=13% Similarity=0.052 Sum_probs=267.2
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcc
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR 183 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 183 (546)
+.|++||+.+..+...|...... +.+.|...+.+++..-|.-...|+....+-..+|+...|.+.|++-++..|+
T Consensus 94 Sv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 94 SVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 67888998887776666654443 5678888999999999999999999999999999999999999999999776
Q ss_pred cchhccchhhH-------HHHHHHhhccccccccCCC--ccccccChhhHHHHHHHHHHHHhcCcccH---HHHHHHHHH
Q 009045 184 CEADIARPELL-------SLVQIHHAQCLLPESSGDN--SLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTLGLI 251 (546)
Q Consensus 184 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~ 251 (546)
...+...-++- ..-.++.....++-..... ...--.+.|+...|...|.+|++.-.++. ..+...|..
T Consensus 174 eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 174 EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 53221100000 0000000000000000000 00001244555666666666665443321 223333333
Q ss_pred HHHcCChHHHHHHHHhhHh--------------------------------------------cCCCChHHHHHHHHHHH
Q 009045 252 LLKSGRLQSSISVLSSLLA--------------------------------------------VDPNNCDCIGNLGIAYF 287 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~~~~~~~~la~~~~ 287 (546)
-..+..++.|.-.|+-+|. .+|.|.++|+..-.+-.
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3344444444444444433 35666667777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH-HHhhcCHHHHHHHHHHHHhcCCC---
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC-LDQASAVNVAKECLLAALKADPK--- 363 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~--- 363 (546)
..|+.+.-.+.|++|+..-|....-.+-.-.+|+ +.+.+.+ .....+.+.+.+.|+.++++-|.
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL------------WinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYL------------WINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH------------HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 7777777777777777665543322111111111 0001111 12578899999999999999997
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 009045 364 -AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV-SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 441 (546)
Q Consensus 364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (546)
.+.+|...|....++.+...|.+.+-.++...|.+....-.+-+ ..+. -+..+.++...-....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~--------------efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR--------------EFDRCRKLYEKFLEFS 467 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh--------------hHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987543322211 1111 1223444444444556
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc----hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 442 IEPPIAWAGFAAVQKTHHEVAAAFETEENELSK----MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
|.+..+|...|.+-..+|+.+.|...|.-+++. .+...|-..-..-...|.+++|...|++.|+..+... +|...
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 788899999999999999999999999988773 3444455555556688999999999999999987654 88777
Q ss_pred HHHHH-----hcC-----------ChHHHHHHHHHHHHHhccc
Q 009045 518 ANAYY-----LTG-----------DHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 518 g~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~ 544 (546)
|..-. ..| +...|...|++|...+..+
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 77654 455 6778999999999887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=122.57 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=116.4
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
-...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~------------------- 69 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM------------------- 69 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-------------------
Confidence 356899999999885 6678999999999999999999999999999999999999988
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|+++..+...+..
T Consensus 70 --~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 70 --MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999888777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=122.91 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=117.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH-HHcCC--HHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY-FQSGD--MEQSA 296 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~ 296 (546)
..++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999975 77787 59999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
+.++++++.+|++..++..+|..+. ..|++++|+.+++++++..|.+..-
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~---------------------~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF---------------------MQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999988 8999999999999999998875443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=130.20 Aligned_cols=291 Identities=11% Similarity=-0.018 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc
Q 009045 134 SREEKGLVHVARKMPKN---AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (546)
..+.+.+.++.+..|.+ .+..+..|.++...|++++|+..++++++.+|++. ..+.. +..+..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------------~a~~~-~~~~~~~ 89 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL------------LALKL-HLGAFGL 89 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------------HHHHH-hHHHHHh
Confidence 44466677777666644 66788889999999999999999999999977642 11111 2222222
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 211 g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
|.. .+....+...+......+|.....+..+|.++..+|++++|+..+++++++.|++..++..+|.++...|
T Consensus 90 ~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 90 GDF-------SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred ccc-------ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 221 2334556666655556778888888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--C
Q 009045 291 DMEQSAKCFQDLILKDQNHPA----ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--A 364 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~ 364 (546)
++++|+.++++++...|.... .+..++.++. ..|++++|+..|++++...|. .
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~---------------------~~G~~~~A~~~~~~~~~~~~~~~~ 221 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL---------------------ERGDYEAALAIYDTHIAPSAESDP 221 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHhccccCCCh
Confidence 999999999999998875432 2334555555 999999999999999876662 2
Q ss_pred HHHHH---HHHHHHHHcCChHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWA---NLANAYYLTGDHRSSGKCLEKAAKLE-PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
..... .+...+...|....+... +.+.... +....
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~---------------------------------------- 260 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD---------------------------------------- 260 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc----------------------------------------
Confidence 21111 122222333332222221 1111110 00000
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---c--------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---K--------MEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
..........+.++...|+.++|...+..... . .........+.++...|++++|+..+..++.+.
T Consensus 261 -~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 -HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00011123455566666777776666655222 1 112334567778899999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=121.54 Aligned_cols=316 Identities=12% Similarity=0.044 Sum_probs=209.4
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+...+|..|+..++-.+..+.... .....+|.|++.+|+|++|+..|.-+...+.-+.+.+.+|+.+++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567788999999998887665443 566778999999999999999999999887778899999999999999999998
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHh------hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCK------YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
..-.++-+ .|-....++.++.-+-.. ........+..+.++.+....-.|++|++.|.+.+..+|+.......
T Consensus 112 ~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 87766532 121122222222211100 00011123445567777778888999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHH-------HHHH------------
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG-------NEMA------------ 431 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~-------~~~~------------ 431 (546)
++.||+++.-|+-+.+.+.--++..|+++.+....+...+.-.. ...+........ ....
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 99999999999999999999999999998777655543332110 000000000000 0000
Q ss_pred --HHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhh---------------------------
Q 009045 432 --SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAG--------------------------- 482 (546)
Q Consensus 432 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--------------------------- 482 (546)
..++-..+.....|++..++...|..+++..+|+..... ++|..+.-+..
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 111111112224566777788888888888888776543 22222222222
Q ss_pred ----------------HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 483 ----------------ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 483 ----------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+|.+++-..++++-+.++...-...-++....++++.++...|++.+|.+.|-+
T Consensus 349 VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 349 VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 333333334466666666666666666667777888888888888888777644
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-13 Score=144.73 Aligned_cols=381 Identities=11% Similarity=0.040 Sum_probs=232.3
Q ss_pred HHhhccchhhhhhHHHHHhHhcCCCC----cccccccCCCCchHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChhHH
Q 009045 96 KINKLGKCRSRISSKMDSALEFGVDA----DGDQSGLGTSSSSREEKGLVHVARKM-PKNAHAHFLLGLMYQRLGQPLKA 170 (546)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~al~~~~~~----~~~~~~~g~~~~~~a~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 170 (546)
.+.+.|+...+. ..|++....+... ...+...|.. .+|.+.|.+..... ..+...+..+-..+...|+.+.|
T Consensus 231 ~y~k~g~~~~A~-~lf~~m~~~d~~s~n~li~~~~~~g~~--~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 231 MYVKCGDVVSAR-LVFDRMPRRDCISWNAMISGYFENGEC--LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHhcCCCHHHHH-HHHhcCCCCCcchhHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 355666666654 5555544333322 2233445555 88888888887653 23556677777788888999999
Q ss_pred HHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 009045 171 VSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 250 (546)
Q Consensus 171 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 250 (546)
.+.+..+++..- .|+. ..+..+...| .+.|++++|...|+++.. .+...|..+..
T Consensus 308 ~~l~~~~~~~g~-------~~d~----~~~n~Li~~y-----------~k~g~~~~A~~vf~~m~~---~d~~s~n~li~ 362 (857)
T PLN03077 308 REMHGYVVKTGF-------AVDV----SVCNSLIQMY-----------LSLGSWGEAEKVFSRMET---KDAVSWTAMIS 362 (857)
T ss_pred HHHHHHHHHhCC-------ccch----HHHHHHHHHH-----------HhcCCHHHHHHHHhhCCC---CCeeeHHHHHH
Confidence 998888877532 1221 2233333333 345666889888888653 34567888888
Q ss_pred HHHHcCChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCcc
Q 009045 251 ILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSV 327 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 327 (546)
.|.+.|++++|++.|++.... .|+. ..+..+-..+...|++++|.+.+..+.+.... +...+..+...|.
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~------ 435 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS------ 435 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH------
Confidence 888999999999998877554 4554 34555555778888888888888888876432 3444555555555
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCChhHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL-EPNCMSTRYAVA 406 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 406 (546)
+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.+.. .|+.......+.
T Consensus 436 ---------------k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 436 ---------------KCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred ---------------HcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 77788888888776543 34567777777788888888888888777643 233221111111
Q ss_pred -HHHHHHhh----------hc---------------cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhccc
Q 009045 407 -VSRIKDAE----------RS---------------QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHE 460 (546)
Q Consensus 407 -~~~l~~~~----------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (546)
........ +. ......+..+ ...+... ..+...|..+...|...|+
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A----~~~f~~~----~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA----WNQFNSH----EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH----HHHHHhc----CCChhhHHHHHHHHHHcCC
Confidence 00000000 00 0000011111 1122221 2345677778888888888
Q ss_pred HHHHHHHHHhhcc---chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 461 VAAAFETEENELS---KMEECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 461 ~~~A~~~~~~~l~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.++|+..|.+... ..+...+..+-..+.+.|++++|..+|+...+..+ -+...|..+..++.+.|++++|.+.++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888776443 12223344555567777778888888877764322 134567777777777788777777776
Q ss_pred HH
Q 009045 536 KV 537 (546)
Q Consensus 536 ~a 537 (546)
+.
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 53
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=123.21 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=118.6
Q ss_pred cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccc
Q 009045 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 255 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
.++.++++..+++++..+|++...|..+|.+|...|++++|+..|+++++++|++...+..+|.++..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~------------ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY------------ 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Confidence 67889999999999999999999999999999999999999999999999999999999999987531
Q ss_pred cccchHHHhhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 335 TGEGACLDQASA--VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 335 ~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
..|+ +++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++..|.+..-
T Consensus 120 --------~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 120 --------QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred --------hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 5566 5999999999999999999999999999999999999999999999999886543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=126.12 Aligned_cols=284 Identities=14% Similarity=0.090 Sum_probs=180.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
.-|.-+++.|++...+.+|+.|++... .++..+..+| ..+|+. |+-.++|++|+++-..-+
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGT--------eDl~tLSAIY-------sQLGNA----yfyL~DY~kAl~yH~hDl 82 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGT--------EDLSTLSAIY-------SQLGNA----YFYLKDYEKALKYHTHDL 82 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcc--------hHHHHHHHHH-------HHhcch----hhhHhhHHHHHhhhhhhH
Confidence 347778999999999999999999853 3344344444 444544 566777799998765433
Q ss_pred hc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCH-----------
Q 009045 236 QS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDM----------- 292 (546)
Q Consensus 236 ~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~----------- 292 (546)
.+ .-..+.+.-+||.++-..|.|++|+.+..+-+.+.. ....+++++|.+|...|+.
T Consensus 83 tlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~ 162 (639)
T KOG1130|consen 83 TLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGA 162 (639)
T ss_pred HHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhccc
Confidence 22 223355667899999999999999999988776532 2367899999999887652
Q ss_pred --HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------C
Q 009045 293 --EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------A 364 (546)
Q Consensus 293 --~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~ 364 (546)
+++...++.+.+..-.+......++. ..+....+-++|..|+-+|+|+.|+..-+.-+.+... .
T Consensus 163 f~~ev~~al~~Av~fy~eNL~l~~~lgD--------r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae 234 (639)
T KOG1130|consen 163 FNAEVTSALENAVKFYMENLELSEKLGD--------RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE 234 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554433222222222222 2223344456788888899999999888877776443 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
-.++.++|.++.-+|+++.|+++|+..+.+.-. ++. . ...
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-------lg~----r-----------------------------~vE 274 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-------LGN----R-----------------------------TVE 274 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-------hcc----h-----------------------------hHH
Confidence 457888999999999999999999887654211 000 0 001
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
+...+.+|..|.-..++++||.++.+-+. .....+.|.+|..+-..|..++|+.+.++.+++
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23455566666666666666666655222 112244555555555555555555555555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=138.17 Aligned_cols=157 Identities=9% Similarity=0.051 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+++.-........|+++.++.+||.+..+.|++++|...++.++++.|++..++..++.++.+++++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44444455556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
.+|++..+++.+|.++. +.|++++|+.+|++++..+|++..++..+|.++...|+.++|
T Consensus 149 ~~p~~~~~~~~~a~~l~---------------------~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 149 GGSSSAREILLEAKSWD---------------------EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred cCCCCHHHHHHHHHHHH---------------------HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHH
Q 009045 385 GKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~ 402 (546)
...|+++++...+-...+
T Consensus 208 ~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 208 RDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHhhCcchHHH
Confidence 999999999877655443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-13 Score=136.49 Aligned_cols=260 Identities=12% Similarity=0.008 Sum_probs=191.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 224 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 224 (546)
..+|.+..++..|...+...|++++|+..++.+++..|+. ...++..|.++... +++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~------------i~~yy~~G~l~~q~-----------~~~ 81 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS------------ISALYISGILSLSR-----------RPL 81 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc------------eehHHHHHHHHHhh-----------cch
Confidence 4578999999999999999999999999999999986653 23333344333222 221
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.++ +...++.+.....++ .+++++-..+...+.+..+++.+|.+|-++|++++|...|+++++
T Consensus 82 ~~~----------------~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 82 NDS----------------NLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hhh----------------hhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 221 222555555566666 667777766666788888999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
.+|+++.++.++|..+. .. ++++|+.++.+++.. +...+++.++
T Consensus 145 ~D~~n~~aLNn~AY~~a---------------------e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~ 188 (906)
T PRK14720 145 ADRDNPEIVKKLATSYE---------------------EE-DKEKAITYLKKAIYR--------------FIKKKQYVGI 188 (906)
T ss_pred cCcccHHHHHHHHHHHH---------------------Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHH
Confidence 99999999999999887 55 899999999999876 6777899999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
..++.+.+..+|++......+-........ ..
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~----------------------------------------------~~-- 220 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHRE----------------------------------------------FT-- 220 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhc----------------------------------------------cc--
Confidence 999999999999987665443221110000 00
Q ss_pred HHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 465 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 465 ~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.-...+.-+=.+|...++|++++.+++.+++.+|.|..+...++.||. +.|.. ...|+..+++.
T Consensus 221 ----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 221 ----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred ----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 000111122227888889999999999999999999999999999987 44444 45555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=109.87 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=157.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|+.+-|..++++.....|++.......|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+...++..+.+.++|..++.+|. ..|+|++|.-++++.+-+.|.++..+..+|.+++-+
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~---------------------~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYL---------------------SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---------------------hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999998 889999999999999999999999999999999987
Q ss_pred CC---hHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 379 GD---HRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 379 g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
|- +.-|.++|.++++++|.+..+++.+..+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 74 6779999999999999888888877553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-12 Score=107.37 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 224 LEEILSKLKESMQ------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++-++.....+. ..++...++-....+....|+.+-|..++++.....|+...+....|..+...|++++|++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 3555555555443 3444455666677788889999999999999998899999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+|+..+.-+|.+...+.....+.. .+|+.-+||+.+...++..+.+.++|..++.+|..
T Consensus 108 ~y~~lL~ddpt~~v~~KRKlAilk---------------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 108 YYESLLEDDPTDTVIRKRKLAILK---------------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHhccCcchhHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 999999999999888776555554 77888899999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.|+|++|.-+|++++-+.|.++..+..+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 9999999999999999999887554443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-11 Score=112.05 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|.+...+++...|++..+++..-.+....++|++|+...+.-...... ....+..+++.
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------------~~~~fEKAYc~------ 89 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------------NSFFFEKAYCE------ 89 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-------------chhhHHHHHHH------
Confidence 55566666677777777777777777777777777776443332211000 00001222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
++.+..++|+..++ -.++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-... -.
T Consensus 90 -----Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l 159 (652)
T KOG2376|consen 90 -----YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--AL 159 (652)
T ss_pred -----HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hh
Confidence 23333466666665 233444445555666666666666666666666555444433322221111100 00
Q ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--------C-
Q 009045 294 QSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--------K- 363 (546)
Q Consensus 294 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~- 363 (546)
.+ . ..+.....|. ..+.+++.+.++. ..|+|.+|++.+++++++.. .
T Consensus 160 ~~-~-~~q~v~~v~e~syel~yN~Ac~~i---------------------~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 160 QV-Q-LLQSVPEVPEDSYELLYNTACILI---------------------ENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred hH-H-HHHhccCCCcchHHHHHHHHHHHH---------------------hcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 00 0 1222222222 3344555555554 89999999999999955421 1
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 364 ------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 364 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
-..+...++.++..+|+.++|...|...++.+|.+..
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 1346788999999999999999999999999887753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-11 Score=116.09 Aligned_cols=419 Identities=14% Similarity=0.055 Sum_probs=245.0
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG--- 165 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g--- 165 (546)
..++...|++..++ ..+.+....-.+.......+|.+ +...|+..|..++..+|+|...+..+..+.....
T Consensus 11 ~~il~e~g~~~~AL-~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEAL-EHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHH-HHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34455566666665 55555555555444443444333 4488889999999999999999999988884443
Q ss_pred --ChhHHHHHHHHHHHHhcccchhccc-------hhhHHHHHHHhhccccccccCCCcc-----ccccChhhHHHHHHHH
Q 009045 166 --QPLKAVSSYEKAEEILLRCEADIAR-------PELLSLVQIHHAQCLLPESSGDNSL-----DKELEPEELEEILSKL 231 (546)
Q Consensus 166 --~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~A~~~~ 231 (546)
..+.-..+|++..+..|........ ..+...+..+.... ...|-.++ ..|-...+..-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~---l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ---LRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH---HhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 4566678888887777765322111 11211111111110 01111100 0011222222222222
Q ss_pred HHH---Hhc------------Cccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHH
Q 009045 232 KES---MQS------------DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 232 ~~a---l~~------------~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 294 (546)
... ++. .|.. ..+++.++..|...|++++|+++++++|...|..++.+...|.++.+.|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 222 211 1111 24668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---------CH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---------AA 365 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------~~ 365 (546)
|.++++.+..+++.+.......+..++ +.|++++|.+.+..-.+.+.+ ..
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~L---------------------Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLL---------------------RAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHH---------------------HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 999999999999988877666666666 899999999999887665421 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh----hHHH-H------HHHHHHHHhhhccCchhHHHHHHHHHHH--
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM----STRY-A------VAVSRIKDAERSQEPTEQLSWAGNEMAS-- 432 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~-~------l~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 432 (546)
......|.+|.+.|++..|+..|..+.+...+.. +.+. . .+...+............+..+...+..
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 2334569999999999999999999887643221 1111 1 1122222222222222222222222211
Q ss_pred --HHhcCCCCCCCc---------HHHHHHHHH-H--HHhcccHHHHHHHHHhh----------ccch--hhhHHhhHHHH
Q 009045 433 --ILREGDPVQIEP---------PIAWAGFAA-V--QKTHHEVAAAFETEENE----------LSKM--EECAGAGESAF 486 (546)
Q Consensus 433 --~~~~~~~~~~~~---------~~~~~~l~~-~--~~~~~~~~~A~~~~~~~----------l~~~--~~~~~~~la~~ 486 (546)
............ +.-...... . -....+-+++...-.+. .... ...----.|.-
T Consensus 386 l~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Gek 465 (517)
T PF12569_consen 386 LELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEK 465 (517)
T ss_pred HHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHH
Confidence 111111100000 000000000 0 00000111111100000 0000 00000123444
Q ss_pred HHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 487 LDQASA-VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 487 ~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+.+..+ .++|.++++-.++..|++.++|..--.+|.+.|++-.|++++.+|
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 444443 688999999999999999999999999999999999999998775
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=111.08 Aligned_cols=147 Identities=20% Similarity=0.276 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
+.+..+..++...+|.+...+..+|...++.|+|..|+..++++..+.|++..+|..+|.+|.+.|++++|...|.++++
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 33444444444456667777777899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
+.|+.+....+++..+. -.|+++.|..++..+....+.+..+..+++.+...+|++.+|
T Consensus 163 L~~~~p~~~nNlgms~~---------------------L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 163 LAPNEPSIANNLGMSLL---------------------LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hccCCchhhhhHHHHHH---------------------HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999988887 788999999999999888888899999999999999999998
Q ss_pred HHHHHHHH
Q 009045 385 GKCLEKAA 392 (546)
Q Consensus 385 ~~~~~~al 392 (546)
.....+-+
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 87765433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-12 Score=110.01 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34456777777778889999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
+..+.|+++.+|..+|.+|. +.|++++|...|.+++++.|..+.+..++|..|.-.|++
T Consensus 126 A~~l~p~d~~~~~~lgaald---------------------q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALD---------------------QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HhccCCCChhhhhHHHHHHH---------------------HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 99999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
+.|..++..+...-+.+..+..++
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHH
Confidence 999999999988777665443333
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-12 Score=110.50 Aligned_cols=280 Identities=11% Similarity=0.019 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
-...++.+++..-.|++|++.|++++.-+|+....-..++.+|+++.-++-+.+.+.--++..|+.+.+....+..+++.
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 44567788888889999999999999999999888999999999999999999999999999999988877776666544
Q ss_pred hCccccc---------cccccccchHHHhh-----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 324 YGSVLAG---------AGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 324 ~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
.....+. ...-+..+..+.+. .+-+.|+..+-..++. -+++..+|...|..+++..+|+..++
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K 309 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQNDVQEAISLCK 309 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccccHHHHHHHHh
Confidence 2211110 00000001111100 0111222222222221 35677777777888888888777665
Q ss_pred HHHhcCCCChhHHHHHHH--HHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAV--SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
.++|..+.-+...+. ..+++...+.+..+ ..+.+...+...... -+.......++..++-..++++.+..
T Consensus 310 ---dl~PttP~EyilKgvv~aalGQe~gSreHlK----iAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 310 ---DLDPTTPYEYILKGVVFAALGQETGSREHLK----IAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred ---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHH----HHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 456666655544333 22222222221111 111111222111111 11111233344444444455554444
Q ss_pred HHhh--ccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 468 EENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PKAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 468 ~~~~--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
+... .-..+....+++|+++...|+|.+|.+.|-++-..+ .+.......|++||.+.|+.+.|-..|
T Consensus 382 lnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 382 LNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3331 113334455566666666666666666666554333 222334455666666666666665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=109.78 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=112.5
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++..+.+.+|.++...|++++|+..|++++..+|.++.++..+|.++..+|++++|+.+|+++++.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+...++.+|.++. ..|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLL---------------------ALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999888 89999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=108.75 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=113.2
Q ss_pred HHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 263 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
..|++++..+|++..+.+.+|..+...|++++|+..|++++..+|.+...+..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------------------- 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--------------------- 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------
Confidence 46889999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..++++++.+|.++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 889999999999999999999999999999999999999999999999999999886543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-11 Score=117.62 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+.+++.....++...|++++|++++++....-. |. ..+....|.++ +..|++++|..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~---------Dk---~~~~E~rA~ll-----------~kLg~~~eA~~ 59 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQIL---------DK---LAVLEKRAELL-----------LKLGRKEEAEK 59 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC---------CH---HHHHHHHHHHH-----------HHcCCHHHHHH
Confidence 356677777788888888888888877554421 11 12223333333 34445588888
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS-AKCFQDLI 303 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 303 (546)
.|...++.+|++...+..+..+..... +.+.-...|+......|....+. .+...+..-..|... ..++...+
T Consensus 60 ~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 60 IYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHH
Confidence 888888888888777777777763332 45555666776666655432111 111111111111111 11111111
Q ss_pred hh--------------CCCCHHHHHHHHHHHHHhhCcc--------------ccccccccccchHHHhhcCHHHHHHHHH
Q 009045 304 LK--------------DQNHPAALINYAALLLCKYGSV--------------LAGAGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 304 ~~--------------~p~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.. +|....+...+..-+....... ......++.++..|...|++++|+++++
T Consensus 139 ~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 139 RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11 1111111112222111110000 0001223345777779999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 356 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 356 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
++|+..|..++.+...|.++...|++.+|...++.+..+++.+-
T Consensus 219 ~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 219 KAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999999999999999999999999998764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-10 Score=103.91 Aligned_cols=271 Identities=19% Similarity=0.101 Sum_probs=194.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-PAALINYAALLLCK 323 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 323 (546)
...-|..-+..|+|.+|.....+.-+..+.-..++..-+..-..+|+++.|-.++.++-+..+++ .......+.++.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-- 164 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-- 164 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH--
Confidence 33456666778999999999999887777767777777888889999999999999998884443 333455555555
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh---
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS--- 400 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 400 (546)
..|+++.|.....++++..|.++.+......+|...|+|.+....+.+.-+..--+..
T Consensus 165 -------------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -------------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -------------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 8899999999999999999999999999999999999999999888877665332221
Q ss_pred HHHHHHHHH-HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc------
Q 009045 401 TRYAVAVSR-IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------ 473 (546)
Q Consensus 401 ~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------ 473 (546)
-+-..+... +.+..... ....+..-.+.. ......++.+-..++.-+..+|+.++|.+.....++
T Consensus 226 ~le~~a~~glL~q~~~~~-~~~gL~~~W~~~-------pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 226 RLEQQAWEGLLQQARDDN-GSEGLKTWWKNQ-------PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHHHHHHHHhccc-cchHHHHHHHhc-------cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 112223222 22222221 111111111111 111223456667777777778888777776654332
Q ss_pred ---------------------------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 474 ---------------------------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 474 ---------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+..+..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 233355778999999999999999999999998875 5678999999999999
Q ss_pred hHHHHHHHHHHHHHhcccC
Q 009045 527 HRSSGKCLEKVLMVYCSSN 545 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~~~ 545 (546)
..+|.+.+++++.++.+++
T Consensus 377 ~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 377 PEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999997775554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.8e-14 Score=124.26 Aligned_cols=277 Identities=16% Similarity=0.136 Sum_probs=198.1
Q ss_pred chhhhhHHhhccchhhhhhHHHHHhHhcCCCCcc----cccccCCC-----CchHHHHH------HHHHHHhCCCCHHHH
Q 009045 90 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADG----DQSGLGTS-----SSSREEKG------LVHVARKMPKNAHAH 154 (546)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~----~~~~~g~~-----~~~~a~~~------~~~~l~~~p~~~~~~ 154 (546)
...+|..+++.|+|..-+ .-|..||+.+..+.. .+..+|+. ++.+|.+. +.+.+...-..+.+-
T Consensus 20 LalEGERLck~gdcraGv-~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGV-DFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHhccchhhhH-HHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 356899999999999887 889999998876432 23345554 22333331 122222222345566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccc-c--------ccChhhHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD-K--------ELEPEELE 225 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~--------~~~~~~~~ 225 (546)
-+||+.+-..|.|++|+.+..+-+.+..+ -.+-+.-.++++++|.+|...|....- . .-....++
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~are------LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARE------LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHH------HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 78999999999999999999998887432 344555678889999999888876110 0 01123456
Q ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHH
Q 009045 226 EILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 293 (546)
.|.++|..-+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-+|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 6667776666543322 3367789999999999999999988877764332 458899999999999999
Q ss_pred HHHHHHHHHHhhC----CCCHH--HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----
Q 009045 294 QSAKCFQDLILKD----QNHPA--ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---- 363 (546)
Q Consensus 294 ~A~~~~~~al~~~----p~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 363 (546)
.|+++|++.+.+. ....+ ..+. +|..|.-..++++||.++.+-+.+...
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYS---------------------LgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYS---------------------LGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987542 22222 2334 445555888999999999998776432
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
...+++.||.++..+|..++|+.+.+..+++
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5678999999999999999999998887765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-12 Score=124.06 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|..+..-..++..+...|-...|+..|++.-.. .....+|..+|+ ..+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw--------------------~~vi~CY~~lg~-----------~~ka 443 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMW--------------------DPVILCYLLLGQ-----------HGKA 443 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH--------------------HHHHHHHHHhcc-----------cchH
Confidence 556667788999999999999999999986443 233344444444 4899
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+..+-++ .|.++..|..+|.+....--|++|.++.+.. +..+...+|......++|.++.+.++..++++|
T Consensus 444 eei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 444 EEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 999999888 6667888999998888777777777766653 345778888888889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
-....|+.+|.+.+ +.++++.|.++|.+++.++|++.++|.+++.+|...|+..+|...
T Consensus 517 lq~~~wf~~G~~AL---------------------qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 517 LQLGTWFGLGCAAL---------------------QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHhccHHHH---------------------HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 99999999999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHH
Q 009045 388 LEKAAKLEPNCMSTR 402 (546)
Q Consensus 388 ~~~al~~~p~~~~~~ 402 (546)
++++++.+-++...|
T Consensus 576 l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIW 590 (777)
T ss_pred HHHHhhcCCCCCeee
Confidence 999999886665443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=119.71 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=99.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+++.++|.+|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.+|.++|....+|..||.+|..+|++.+|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.|+++|.++|++...+.+|..+-.
T Consensus 171 aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 171 AYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999987777766554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-10 Score=105.07 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=150.5
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC--CchHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS--SSSREEKGLVHVARKMPKN---AHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~--~~~~a~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~ 168 (546)
-....+-|++..++ ....+.+...|+...+++..-.. +.++.++++ ..++.++.. ....+..+.|.+++++.+
T Consensus 19 ln~~~~~~e~e~a~-k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAV-KTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-KLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHH-HHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-HHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 34455556666666 88889999999988887765443 778888888 888888742 222368999999999999
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..++ .++. . ++.+. ...+.+ .++.|+|++|+..|+..++.+.++.+.....
T Consensus 97 ealk~~~-~~~~--~-------~~~ll-----~L~AQv-----------lYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 97 EALKTLK-GLDR--L-------DDKLL-----ELRAQV-----------LYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred HHHHHHh-cccc--c-------chHHH-----HHHHHH-----------HHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999 2221 1 11111 111111 3467888999999999998877766554433
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD--------QNHPAALINYAAL 319 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~ 319 (546)
...-... -..+ . ..+.+...|. ..+.+++.+.++...|+|.+|++.+++++++. .+..+.-..+..+
T Consensus 151 nl~a~~a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 151 NLLAVAA--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHH--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 3222111 1111 1 3344444554 67899999999999999999999999995432 1112222222222
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.. .++.++...|+.++|...|...++.+|.+.
T Consensus 227 rv--------------QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 227 RV--------------QLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HH--------------HHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 22 235556699999999999999999887654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=115.75 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
++-+-.-|.-+++.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
.+|++++|++.|+++|+++|++...+.+|..+-..+++..
T Consensus 161 ---------------------~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ---------------------ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---------------------ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7788888888888888888888888777777766666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-12 Score=127.47 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=168.7
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..++.+.++..++.+|+....++.+|.++...+++.++... .++...+.
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~----------------------------- 95 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ----------------------------- 95 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-----------------------------
Confidence 38888899999999999999999999999999998888877 66665322
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
..++ .+++++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... ++
T Consensus 96 --------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 96 --------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2334 5666666666668888889999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH-----
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI----- 367 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----- 367 (546)
++|++++.+++.. +. ..+++..+.+++.+.+..+|++.+.
T Consensus 166 ~KA~~m~~KAV~~--------------~i---------------------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 166 EKAITYLKKAIYR--------------FI---------------------KKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred HHHHHHHHHHHHH--------------HH---------------------hhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 9999999999876 22 4456777888888888877775443
Q ss_pred ---------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 368 ---------------WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 368 ---------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+.-+-..|...++|++++..++.+++.+|++..+...++.+..
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233377888999999999999999999999888877776544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=127.47 Aligned_cols=320 Identities=13% Similarity=0.028 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++.....++.++...|++++|...+.++....+..... ..+... ..+....+.+ +...|++++|..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~-~~~~~~--~~~~~~~a~~-----------~~~~g~~~~A~~ 473 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE-LDGTLQ--AEFNALRAQV-----------AINDGDPEEAER 473 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc-cchhHH--HHHHHHHHHH-----------HHhCCCHHHHHH
Confidence 35556677888889999999999999887753321100 011111 1222223333 245667799999
Q ss_pred HHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 230 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 230 ~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
.+++++...+.. ..+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...
T Consensus 474 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 474 LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999998854432 2356778999999999999999999998763321 34667889999999999999999
Q ss_pred HHHHHhhCCCC--------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CH
Q 009045 299 FQDLILKDQNH--------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AA 365 (546)
Q Consensus 299 ~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~ 365 (546)
+++++...... ...+..+ |.++...|++++|...+.+++..... ..
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~l---------------------a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIR---------------------AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHH---------------------HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 99998763221 1112223 34444889999999999999876332 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
..+..+|.++...|++++|...+.++..+.+...........
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~-------------------------------------- 654 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN-------------------------------------- 654 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH--------------------------------------
Confidence 566778999999999999999999998764432110000000
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchhh------hHHhhHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEE------CAGAGESAFLDQASAVNVAKECLLAALKADP------KAAHI 513 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~ 513 (546)
........+...|+.+.|............. ..+..++.++...|++++|+..+++++.... ....+
T Consensus 655 -~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 -ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0000011222345555555554442221111 1134566777788888888888888776521 22456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..+|.++...|+.++|...+.+++++...
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 777888888888888888888888877644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-12 Score=129.09 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=126.8
Q ss_pred HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 197 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
...+..++.+...+|.. ++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++
T Consensus 86 ~~~~~~La~i~~~~g~~-----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 86 ELFQVLVARALEAAHRS-----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 45566667666555555 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
.+++.+|.++..+|++++|+..|++++..+|++..++..+|.++. ..|+.++|...|++
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~---------------------~~G~~~~A~~~~~~ 213 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT---------------------RRGALWRARDVLQA 213 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HHhcCCCCHHH
Q 009045 357 ALKADPKAAHI 367 (546)
Q Consensus 357 al~~~p~~~~~ 367 (546)
+++....-...
T Consensus 214 a~~~~~~~~~~ 224 (694)
T PRK15179 214 GLDAIGDGARK 224 (694)
T ss_pred HHHhhCcchHH
Confidence 99987664444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=101.09 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=90.8
Q ss_pred HhcC-cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 235 MQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 235 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
..+. ++.-+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++.+|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
.+.|.+++ ..|+.+.|++.|+.++...
T Consensus 107 ~~ag~c~L---------------------~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYL---------------------ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHh
Confidence 88888887 8888888888888888876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-10 Score=104.63 Aligned_cols=417 Identities=14% Similarity=0.097 Sum_probs=265.8
Q ss_pred hHHhhccchhhhhhHHHHHhHhcCCCCcccccccC---------CCCchHH----HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009045 95 KKINKLGKCRSRISSKMDSALEFGVDADGDQSGLG---------TSSSSRE----EKGLVHVARKMPKNAHAHFLLGLMY 161 (546)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g---------~~~~~~a----~~~~~~~l~~~p~~~~~~~~lg~~~ 161 (546)
..-++.|.....+.-.|++++...|.+...|+..- ......+ -.+|++++..--+-+.+|.......
T Consensus 33 YIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l 112 (835)
T KOG2047|consen 33 YIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFL 112 (835)
T ss_pred HHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33445554444444568899999999888777532 1122222 2378888887788899999999999
Q ss_pred HHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCccc
Q 009045 162 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241 (546)
Q Consensus 162 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 241 (546)
..+|+...-...|.+|+...|-.......+-++..+. ..+-.+-++..|++-++..|..
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~---------------------~~~lPets~rvyrRYLk~~P~~ 171 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVE---------------------SHGLPETSIRVYRRYLKVAPEA 171 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHH---------------------hCCChHHHHHHHHHHHhcCHHH
Confidence 9999999999999999998775533322222222111 1223378888888888888875
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------------------------CCCC---------------------h
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------------DPNN---------------------C 276 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------~p~~---------------------~ 276 (546)
.+ ..-..+...+++++|.+.|...+.. +|+. .
T Consensus 172 ~e---eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 172 RE---EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HH---HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 33 3344566777888887777766542 2211 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHH-----Hhh------Ccccc--c----------
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ---NHPAALINYAALLL-----CKY------GSVLA--G---------- 330 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~-----~~~------~~~~~--~---------- 330 (546)
..|..||..|.+.|.+++|...|++++..-- +....+..++..-. ... ..... +
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 3588899999999999999999999986421 11111111111100 000 00000 0
Q ss_pred ------------------cccccccchHHHhhcCHHHHHHHHHHHHhc-CCC-----CHHHHHHHHHHHHHcCChHHHHH
Q 009045 331 ------------------AGANTGEGACLDQASAVNVAKECLLAALKA-DPK-----AAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 331 ------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.......-++-...|+..+-+..|..+++. +|. -...|..+|..|...|+.+.|..
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 000011233444567888888999888764 554 35689999999999999999999
Q ss_pred HHHHHHhcCCCCh----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHh--------cCCCCCC------CcHHHH
Q 009045 387 CLEKAAKLEPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR--------EGDPVQI------EPPIAW 448 (546)
Q Consensus 387 ~~~~al~~~p~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~ 448 (546)
.|+++++..-... ..|..-|...+.. +.+..+..-+..... ..+...| ....+|
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh--------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRH--------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999998754433 2233333222211 111111111111111 1111111 345678
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHH---HHHH
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKAD--PKAAHIWANL---ANAY 521 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l---g~~~ 521 (546)
..++......|-++.....|.+.++ -..+....+.|..+....-++++.+.|++-+.+. |.-.++|... ...-
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 8888888999999999999988655 4455566677778888888999999999999876 4456666543 3333
Q ss_pred HhcCChHHHHHHHHHHHHHhcc
Q 009045 522 YLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..-+.+.|...|++|++..++
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCH
Confidence 4455789999999999996653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-12 Score=120.44 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
..|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|.+.....-|++|.++.
T Consensus 410 slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 410 SLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred HcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 33444888888876 35667778888888988888888888888 5666788888888877776666666666
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+..- ..+...+|.... ..++|+++.++++..++++|-....|+.+|.+..+.+
T Consensus 481 n~~s------arA~r~~~~~~~---------------------~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 481 NYIS------ARAQRSLALLIL---------------------SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhh------HHHHHhhccccc---------------------cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 5432 223333443333 6789999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc
Q 009045 380 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 459 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (546)
+++.|.++|..++.++|++.. +|++++..|...+
T Consensus 534 k~q~av~aF~rcvtL~Pd~~e----------------------------------------------aWnNls~ayi~~~ 567 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAE----------------------------------------------AWNNLSTAYIRLK 567 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchh----------------------------------------------hhhhhhHHHHHHh
Confidence 999999999999999998764 4555666666666
Q ss_pred cHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 460 EVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 460 ~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
+-.+|...+.++++- .+-..|-+.-.+....|.+++|++.|.+.+.+.
T Consensus 568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 666666666665552 233445555556777777888888777777653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-12 Score=99.30 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=102.4
Q ss_pred hHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 268 LLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 268 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
+..+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++. ..|+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q---------------------~~g~ 84 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ---------------------AQKH 84 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HHhh
Confidence 34556 7788899999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+++|+..|.+++.++|+++..+.++|.|++..|+.+.|.+.|+.++.....
T Consensus 85 ~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 85 WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988743
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-09 Score=93.81 Aligned_cols=347 Identities=18% Similarity=0.158 Sum_probs=199.0
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
...+++++..-.+.+|++-..+..||.||+...+|..|-.+|++...+.|+... -+.++...
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q----------YrlY~AQS-------- 87 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ----------YRLYQAQS-------- 87 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH----------HHHHHHHH--------
Confidence 366777777788889999999999999999999999999999999998665311 11111111
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
+++.+.+..|+.....+...+.-.....-.-+-+.+..+++..+....++.-. .+.+....+.|.+.++.|++
T Consensus 88 -----LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 -----LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred -----HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccH
Confidence 23445557777766665543222233444455566666777666665554211 14566777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCC-----
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPK----- 363 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~----- 363 (546)
+.|++-|+.+++...-++..-++++.+.+ +.|++..|+++....++. .|.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy---------------------~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHY---------------------SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHH---------------------hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 77777777777777766666666666666 667777777666555442 332
Q ss_pred --------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHhhhccC
Q 009045 364 --------------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-----CMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 364 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~l~~~~~~~~ 418 (546)
-.++....+.++++.|+++.|.+.+.. +-|. ++....++++..+.. +..+
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~~~--~p~~ 294 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNMDA--RPTE 294 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcccC--Cccc
Confidence 123455566777888888877766532 2222 223344444322211 0000
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---------------------chhh
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---------------------KMEE 477 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---------------------~~~~ 477 (546)
. ...+.-.+. ..|-.++.+.++-.+|.+..-++-|-..+..... ..+.
T Consensus 295 g-------~~KLqFLL~----~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 295 G-------FEKLQFLLQ----QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred c-------HHHHHHHHh----cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 0 000111111 1222333444444444444444444333221000 0011
Q ss_pred hHHh---hHHHHH-H----------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 478 CAGA---GESAFL-D----------------QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 478 ~~~~---~la~~~-~----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
.+.- .++..+ . ......+|++.|+.++++. ..++...+++|+...+|..+.+.|++.
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 1100 000000 0 0011455666777777652 457788999999999999999999999
Q ss_pred HHHhccc
Q 009045 538 LMVYCSS 544 (546)
Q Consensus 538 l~~~~~~ 544 (546)
.+.....
T Consensus 441 vefC~eh 447 (459)
T KOG4340|consen 441 VEFCNDH 447 (459)
T ss_pred Hhhhccc
Confidence 9876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-10 Score=105.38 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=136.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++. ..|+..+|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~---------------------~~nk~~~A~ 360 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL---------------------EANKAKEAI 360 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHH
Confidence 37888999999999999999999999999999999999999988888887 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 431 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 431 (546)
+.+++++.++|.....+.++|.+|.+.|++.+|+..++..+..+|+++
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------------------------------- 408 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------------------------------- 408 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc--------------------------------
Confidence 999999999999999999999999999999999999999999999875
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 432 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
..|..++..|..+|+..++...+.. .|...|++++|+..+..+.+..
T Consensus 409 --------------~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 409 --------------NGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------------hHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 4567777778888877776655443 7788889999999998888765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-09 Score=97.67 Aligned_cols=299 Identities=16% Similarity=0.072 Sum_probs=204.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHH
Q 009045 154 HFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKE 233 (546)
Q Consensus 154 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~ 233 (546)
...-|..-+..|+|.+|.....++-+..+ .|....+. -+.+ .-+.|+++.+-.++.+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e-------~p~l~~l~-----aA~A-----------A~qrgd~~~an~yL~e 143 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGE-------QPVLAYLL-----AAEA-----------AQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCc-------chHHHHHH-----HHHH-----------HHhcccHHHHHHHHHH
Confidence 34456666778999999999999776533 22222111 1112 2245667999999999
Q ss_pred HHhcCcc-cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 234 SMQSDTR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 234 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
+-+..++ .......++.+....|+++.|.....++++..|.++.++.....+|...|++......+.+.-+..--+..-
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 9888443 355777889999999999999999999999999999999999999999999999999998877654333222
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH---HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK---ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
...+-.--+. | ++.+.++-..+. .+++..-..-..++.....++.-+...|++++|.+..+
T Consensus 224 ~~~le~~a~~---------------g-lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 224 AARLEQQAWE---------------G-LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHHHH---------------H-HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 2111111100 0 001222222222 23333222223467788888999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
.+++..-+.. ....+.. ....+..+ ..+.++......+++|..+..+|..+.+.+.+.+|...++
T Consensus 288 ~~Lk~~~D~~-L~~~~~~------l~~~d~~~--------l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 288 DALKRQWDPR-LCRLIPR------LRPGDPEP--------LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred HHHHhccChh-HHHHHhh------cCCCCchH--------HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9998765543 1111111 11111111 1122222333356778999999999999999999999999
Q ss_pred hhccchhh-hHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 470 NELSKMEE-CAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 470 ~~l~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
.+++..+. ..+..+|.++.+.|+..+|...++.++.+
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 98885554 55678999999999999999999999854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-11 Score=113.02 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 325 (546)
...|..++..|+|++|+..|++++.++|++..+++.+|.+|..+|++++|+..+++++.++|.+..+++.+|.++.
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~---- 81 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM---- 81 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH----
Confidence 3445555556666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
..|++++|+..|+++++++|++..+...++.+...+
T Consensus 82 -----------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 -----------------KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -----------------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 556666666666666666666665555555554433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=96.49 Aligned_cols=315 Identities=17% Similarity=0.119 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+.-...-|.-++...++.+|+..+.+.+....+ .......+-.+..+ .-+.|.+++++.+
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~---------~~~Rf~~lG~l~~a-----------~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSD---------LMGRFRVLGCLVTA-----------HSEMGRYKEMLKF 65 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHH---------HHHHHHHhccchhh-----------hhhhHHHHHHHHH
Confidence 344566677788889999999999998876321 11111111111222 3355666777665
Q ss_pred HHHHHhc----Cc--ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 231 LKESMQS----DT--RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 231 ~~~al~~----~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
--..+.. +. -..+++.+++..+.+..++.+++.+-+..+.+.... ..+...+|.++..++.++++++.|
T Consensus 66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesf 145 (518)
T KOG1941|consen 66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESF 145 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHH
Confidence 4443332 11 124588899999999999999999999888774332 367778999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----------CHHHHH
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------AAHIWA 369 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~ 369 (546)
++++++..++.+.... ......+|..+.+..++++|+-+..++.++-.. ...+.+
T Consensus 146 e~A~~~A~~~~D~~LE---------------lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 146 EKALRYAHNNDDAMLE---------------LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HHHHHHhhccCCceee---------------eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 9999876554443322 222334566667999999999999999887432 234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 370 NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
.++..+..+|..-.|.++.+++.++.-...+- +.......
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdr----------------------------------------a~~arc~~ 250 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDR----------------------------------------ALQARCLL 250 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCCh----------------------------------------HHHHHHHH
Confidence 88999999999999999999998763221100 01123567
Q ss_pred HHHHHHHhcccHHHHHHHHHhhccc--------hhhhHHhhHHHHHHHhccHHH-----HHHHHHHHHHhCCCC------
Q 009045 450 GFAAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNV-----AKECLLAALKADPKA------ 510 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------ 510 (546)
.+|++|...|+.+.|+..|+.+... ....++.+.+.++....-..+ |++.-++++++...-
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~v 330 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSV 330 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHH
Confidence 7889999999999999988875542 223556677777766555555 888888888765432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
-..+..++.+|..+|.-++=...+.++-+.
T Consensus 331 lK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 331 LKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 356788999999999888877777665443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=107.43 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=169.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
++-.|+|..++..++ ....++ ........+.++++.+|+++..+...... .+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHH
Confidence 345688899998777 223333 44567788999999999998877655442 2334556677777766656777777
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 297 KCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
..++..+..... +.......|.++ ...|++++|++.+.+. .+.+.......+
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~---------------------~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi 140 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATIL---------------------FHEGDYEEALKLLHKG-----GSLELLALAVQI 140 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHH---------------------CCCCHHHHHHCCCTTT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHH---------------------HHcCCHHHHHHHHHcc-----CcccHHHHHHHH
Confidence 777665533322 222233333333 3789999999888764 568888888999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
|..+++++.|.+.++.+-+.+.+........ +|..+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~-----------------------------------------awv~l--- 176 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAE-----------------------------------------AWVNL--- 176 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH-----------------------------------------HHHHH---
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH-----------------------------------------HHHHH---
Confidence 9999999999999999988877644222222 22221
Q ss_pred HHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-HHHH
Q 009045 455 QKTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-RSSG 531 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~ 531 (546)
......+.+|+..|....+. .....+.+++.+++.+|+|++|...++++++.+|++++++.+++.+...+|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 11123577777777774443 33455778999999999999999999999999999999999999999999998 4555
Q ss_pred HHHHHHHHHhc
Q 009045 532 KCLEKVLMVYC 542 (546)
Q Consensus 532 ~~~~~al~~~~ 542 (546)
+++.+.....+
T Consensus 257 ~~l~qL~~~~p 267 (290)
T PF04733_consen 257 RYLSQLKQSNP 267 (290)
T ss_dssp HHHHHCHHHTT
T ss_pred HHHHHHHHhCC
Confidence 66666555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=114.71 Aligned_cols=104 Identities=8% Similarity=0.085 Sum_probs=99.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.|+++++++|++......++.+..
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999888777754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-10 Score=103.44 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=133.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|+....++++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
.+++ +.|++.+|+..++..+..+|+++..|..|+.+|..+|+..+|...+-+.......
T Consensus 382 ~all---------------------~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 382 QALL---------------------KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHH---------------------hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9998 9999999999999999999999999999999999999999999999888877665
Q ss_pred Chh
Q 009045 398 CMS 400 (546)
Q Consensus 398 ~~~ 400 (546)
...
T Consensus 441 ~~~ 443 (484)
T COG4783 441 LEQ 443 (484)
T ss_pred HHH
Confidence 433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-08 Score=95.67 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=153.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCCCccccccCh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEP 221 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 221 (546)
+++.+|.+.+-|.....++ .|+..+-+..|..|+.. +|... .-.....|...+..|. ..
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka-------~Gs~~~Lw~~faklYe-----------~~ 400 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA-------VGSPGTLWVEFAKLYE-----------NN 400 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC-------CCChhhHHHHHHHHHH-----------hc
Confidence 5677888888887776655 57888888888888764 33321 1112344555555543 44
Q ss_pred hhHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC------------------ChHHH
Q 009045 222 EELEEILSKLKESMQSDT----RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------------------NCDCI 279 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~ 279 (546)
|+++.|...|+++.+..- +-+.+|...|..-.+..+++.|+.+.+++...-.. ...+|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 555999999999887543 23568888888888899999999999888765211 23467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..++.+....|-++.....|++.+.+.--.+....+.|..+. ...-++++.+.|++.+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---------------------eh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---------------------EHKYFEESFKAYERGIS 539 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------------hhHHHHHHHHHHHcCCc
Confidence 778888888899999999999999888888888888887776 66778999999999888
Q ss_pred cCC--CCHHHHHHHH---HHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 360 ADP--KAAHIWANLA---NAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 360 ~~p--~~~~~~~~l~---~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+.+ .-.++|...- ..-+.--+.+.|...|++|++..|.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 864 3444444322 2223344678899999999998774
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=95.73 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=102.6
Q ss_pred cChhhHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 293 (546)
+-...+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 33444677777776666555544 6688999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH-------HHHHHHHHHHhcCCC
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN-------VAKECLLAALKADPK 363 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~p~ 363 (546)
+|+..|++++.++|.....+..++.++.. +|..+...|+++ +|+.+|++++..+|.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~--------------~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHY--------------RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------------hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999988873 344444555555 455555555555654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-09 Score=92.03 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=139.3
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++..+|..|++++.--.+..|.+...+..+|.||+...+|..|..+|.+.-.+.|.........+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCCH-HHHHHHHHHHHHhhC-----------ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 299 FQDLILKDQNHP-AALINYAALLLCKYG-----------SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 299 ~~~al~~~p~~~-~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
....... |.-. .....-+.+.+...+ .....+....+.|-+..+.|+++.|++-|+.+++...-++.
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 7655432 1110 111111111111000 00123555667788888999999999999999999998999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.-++++.++++.|++..|+++..+.++.
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=95.83 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=132.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcC--
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVV---WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSG-- 290 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g-- 290 (546)
+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..|++.++.+|++ ..+++.+|.++..++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~ 122 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS 122 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence 56788999999999999999987654 4899999999999999999999999998876 567889998865544
Q ss_pred -------------C---HHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 291 -------------D---MEQSAKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 291 -------------~---~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+ ..+|+..|++.++..|+...+- ..+..+.... +..-+.+|..|.+.|.|..|+
T Consensus 123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l-------a~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL-------AKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchHHHH
Confidence 1 3578899999999999875432 2222221111 223345788899999999999
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 352 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 352 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.-++.+++..|+ ..+++..++.+|..+|..++|.......
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999887 5678899999999999999998876543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-10 Score=96.71 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=108.8
Q ss_pred ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 257 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
..+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..++.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------------ 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA------------ 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------------
Confidence 34566667777788899999999999999999999999999999999999999999999988887431
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
......++...+++++.++|.++.+.+.||..++..|+|.+|+..++..++..|.+..-
T Consensus 205 ------~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 ------GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred ------CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 23446788999999999999999999999999999999999999999999998877543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-09 Score=91.51 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=47.7
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
.+|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45668889999999999999999988875 78899999999999999999887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=93.25 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++..++..|..++..|+|.+|+..|++++...|.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s--------------------------------------------- 38 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS--------------------------------------------- 38 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---------------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------------------------------------
Confidence 45677777777778888888888777777765543
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHc-----------CCHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS-----------GDMEQS 295 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~-----------g~~~~A 295 (546)
|.-..+.+.+|.+++..|++++|+..|++.++..|+++ .+++.+|.+++.+ +...+|
T Consensus 39 ---------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 39 ---------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp ---------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 22245777888888888888888888888888887764 5777778776554 334589
Q ss_pred HHHHHHHHhhCCCCHHHH---HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 009045 296 AKCFQDLILKDQNHPAAL---INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA---AHIWA 369 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 369 (546)
+..|+..+...|+...+- ..+..+... .+..-+.+|..|.+.|.+..|+..++.+++..|+. ..++.
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~ 182 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNR-------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA 182 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 999999999999876442 222222111 12233456888889999999999999999999985 45788
Q ss_pred HHHHHHHHcCChHHHH
Q 009045 370 NLANAYYLTGDHRSSG 385 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~ 385 (546)
.++.+|..+|..+.|.
T Consensus 183 ~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 183 RLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhCChHHHH
Confidence 8899999999888543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=83.48 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 307 (546)
++..|..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-08 Score=104.70 Aligned_cols=344 Identities=13% Similarity=-0.026 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...+...+..+...|++.+|+.++..+-.. ..........+... ...|++..+...
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-------------~~~~~ll~~~a~~l-----------~~~g~~~~l~~~ 396 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-------------QLLRDILLQHGWSL-----------FNQGELSLLEEC 396 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-------------HHHHHHHHHhHHHH-----------HhcCChHHHHHH
Confidence 345566677788889988888766554211 11112222222222 223444655555
Q ss_pred HHHHH-hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 231 LKESM-QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 231 ~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
+..+- .....++.....++.++...|++++|...+..+....+. ...+...+|.++...|++++|...++
T Consensus 397 l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 476 (903)
T PRK04841 397 LNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAE 476 (903)
T ss_pred HHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54431 111223445677888889999999999999988664221 13455667888999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHH
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANA 374 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~ 374 (546)
+++...+.........+.. .+|.++...|++++|...+++++..... ...++..+|.+
T Consensus 477 ~al~~~~~~~~~~~~~a~~----------------~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 477 LALAELPLTWYYSRIVATS----------------VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhcCCCccHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 9998655432211111111 1344555899999999999999876432 13456788999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC-----h---hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC-CCCcH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNC-----M---STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV-QIEPP 445 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~-----~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 445 (546)
+...|++++|...+++++...... . ..+..++...... .. +..+...+...+...... .....
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~-------~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-AR-------LDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cC-------HHHHHHHHHHhHHhhhccCchHHH
Confidence 999999999999999998763321 1 1111222211111 11 111211222221111111 11234
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchh-----hhHHh----hHHHHHHHhccHHHHHHHHHHHHHhCCCCH----H
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKME-----ECAGA----GESAFLDQASAVNVAKECLLAALKADPKAA----H 512 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~ 512 (546)
..+..++.++...|++++|...+.....-.. ..... .....+...|+.+.|..++.......+... .
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 5667789999999999999988877533110 00001 112344567889999999877655332222 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.+..+|.++...|++++|...+++++....
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 256889999999999999999999998754
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.1e-10 Score=87.82 Aligned_cols=107 Identities=23% Similarity=0.336 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALIN 315 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 315 (546)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3577889999999999999999999999888876 5688889999999999999999999999888875 456777
Q ss_pred HHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 369 (546)
++.++. ..|++++|+.+++++++..|++..+..
T Consensus 82 ~~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQ---------------------ELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHH---------------------HhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 777766 888999999999999999888766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=96.18 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKC 298 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 298 (546)
.+.+.-+.-++..+..+|++++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 446888888999999999999999999999999999999999999999999999999999999987654 46789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
++++++.+|.+..+...++..++ ..|+|.+|+..++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~af---------------------e~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAF---------------------EQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999888 899999999999999999887543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=92.95 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=76.2
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
.+..+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34556789999999999999999999999999887653 568999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
.+|.++.
T Consensus 111 ~lg~~~~ 117 (172)
T PRK02603 111 NIAVIYH 117 (172)
T ss_pred HHHHHHH
Confidence 9988887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=85.81 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY---------------------AQGKYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH---------------------hhccHHHHHH
Confidence 4678999999999999999999999999999876 456777777776 9999999999
Q ss_pred HHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 353 CLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 353 ~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.|++++..+|++ +.++..+|.++...|++++|+.+++++++..|++..+.
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 999999998884 67899999999999999999999999999999986543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=84.77 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+|+++.|+..|+++++.+|. +...++.+|.++++.|+|++|+..+++ ...++.+...++.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57889999999999999995 566788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 009045 299 FQDL 302 (546)
Q Consensus 299 ~~~a 302 (546)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-09 Score=86.63 Aligned_cols=105 Identities=22% Similarity=0.282 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677788888888888888888888888888888888888888888888888888888888888888887777777666
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
+ --|+++-|.+.+.+-.+.+|+++-
T Consensus 144 Y---------------------Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 Y---------------------YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred e---------------------ecCchHhhHHHHHHHHhcCCCChH
Confidence 5 667888888888888888887664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-08 Score=87.26 Aligned_cols=186 Identities=19% Similarity=0.185 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..|++.++..|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677888888888888888888888888877754 467888888888888888888888888888887653 333
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. .. ....+ ......+...+|+..|+..+..
T Consensus 84 ~~g~~~~---------------------~~---------~~~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 84 MLGLSYY---------------------KQ---------IPGIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHHH---------------------HH---------HHHHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------Hh---------Cccch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 3333332 11 00000 2233445667899999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 395 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 395 ~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
.|++..+...... +. .+...
T Consensus 120 yP~S~y~~~A~~~--l~----------------------------------~l~~~------------------------ 139 (203)
T PF13525_consen 120 YPNSEYAEEAKKR--LA----------------------------------ELRNR------------------------ 139 (203)
T ss_dssp -TTSTTHHHHHHH--HH----------------------------------HHHHH------------------------
T ss_pred CcCchHHHHHHHH--HH----------------------------------HHHHH------------------------
Confidence 9998654322111 00 00000
Q ss_pred hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHH
Q 009045 475 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~ 531 (546)
-..--+.+|..|.+.|.|..|+..++.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 140 -la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 -LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 11112346668999999999999999999999987 567899999999999988554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=80.03 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=61.9
Q ss_pred hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHhc
Q 009045 477 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 542 (546)
...|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+|++++++-|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4578889999999999999999999999999999999999999999999 79999999999998754
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-09 Score=87.30 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 293 (546)
..++...+...+++.+..+|+. ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3456688888888999888887 5578889999999999999999999999987655 457888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+|+..++.. .-.+-.+..+..+|. ++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gd---------------------i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGD---------------------IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHH---------------------HHHHCCCHHHHHHHHHHhC
Confidence 999999662 222223334444444 4449999999999999874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=78.02 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999874
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-09 Score=102.96 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred CcccHHH--HHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 009045 238 DTRQAVV--WNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--------DMEQSAKCFQDLIL 304 (546)
Q Consensus 238 ~p~~~~~--~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~ 304 (546)
.|.+..+ ++..|.-+...++ +..|+.+|+++++++|+++.++..++.+|.... +...+.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455444 4567777766554 889999999999999999999999988876542 24456666667666
Q ss_pred h--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 305 K--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 305 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
+ +|.++.++..++.... ..|++++|...+++++.++| +..+|..+|.++...|+++
T Consensus 413 l~~~~~~~~~~~ala~~~~---------------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 413 LPELNVLPRIYEILAVQAL---------------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cccCcCChHHHHHHHHHHH---------------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 4 6667777777777666 77999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~ 402 (546)
+|+..|++++.++|.++..+
T Consensus 471 eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHhcCCCCchHH
Confidence 99999999999999988543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=82.13 Aligned_cols=99 Identities=24% Similarity=0.370 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+...+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-- 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH--
Confidence 567888999999999999999999999999888889999999999999999999999999998888878888877776
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
..|++++|...+.++++..|.
T Consensus 80 -------------------~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 -------------------KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -------------------HHHhHHHHHHHHHHHHccCCC
Confidence 788899999999998887763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-09 Score=84.65 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=98.6
Q ss_pred HcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCcc
Q 009045 254 KSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSV 327 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~ 327 (546)
..++...+...+++.++.+|+. ..+.+.+|.+++..|++++|...|++++...|+.. .+.+.++.++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~------ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL------ 96 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH------
Confidence 6789999999999999999988 56788899999999999999999999999876542 23445555555
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
..|++++|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 97 ---------------~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 ---------------QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999976 33344567788999999999999999999999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=81.84 Aligned_cols=99 Identities=30% Similarity=0.434 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
+++.+|.++...|++++|+..++++++..|.+...+..++.++. ..+++++|+.+++++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY---------------------KLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999888888888887 789999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 358 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...|.+..++..+|.++...|++++|...+.++++..|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999988773
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=97.79 Aligned_cols=155 Identities=22% Similarity=0.208 Sum_probs=92.5
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--CHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DMEQSA 296 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~ 296 (546)
...|++++|++.+.+. .+.++......++...++++.|.+.++.+-+.+.+..-.....+++.+..| .+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455666666666543 345555556666666777777777666666666555544444455555544 466666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|++.....+..+..+..++.+++ .+|+|++|.+.+++++..+|.++.++.+++.+..
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l---------------------~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHL---------------------QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHH---------------------HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6776666555555555555555555 6677777777777777777777777777777766
Q ss_pred HcCCh-HHHHHHHHHHHhcCCCCh
Q 009045 377 LTGDH-RSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 377 ~~g~~-~~A~~~~~~al~~~p~~~ 399 (546)
.+|+. +.+.+++.+....+|+++
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhCCChhHHHHHHHHHHHhCCCCh
Confidence 66666 445556666666666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-09 Score=96.49 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=129.8
Q ss_pred ChhhHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESM---QSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 287 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 287 (546)
.....+.|+.+|.+++ .++|+.+.++..++.|++.. ....+|....+++++++|.++.++..+|.++.
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456689999999999 99999999999999998765 24567889999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
..|+++.|+..|++++.++|+...+++..|.+.. ..|+.++|++.++++++++|....+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~---------------------~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF---------------------HNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999998887 8899999999999999999986554
Q ss_pred HHHHHHH-HHHcCChHHHHHHHHHHHh
Q 009045 368 WANLANA-YYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 368 ~~~l~~~-~~~~g~~~~A~~~~~~al~ 393 (546)
-...-.+ .+-....++|+..|-+-.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 3333333 3445567888888765443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=83.66 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..++..|..|-.+|-+.-|.-.|.+++.+.|+-+.++..+|..+. ..|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~---------------------~a~~fdaa~eaF 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------------------QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH---------------------hcccchHHHHHh
Confidence 35677888999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q 009045 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 434 (546)
Q Consensus 355 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (546)
...++++|.+--++.+.|..++.-|++.-|.+.+.+-.+.+|+++.--..+- +.+.. .....+...+....
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY---l~E~k------~dP~~A~tnL~qR~ 193 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY---LNEQK------LDPKQAKTNLKQRA 193 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---HHHhh------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999874322221 11100 00111111111111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHhcccH--HHHHHHHHh------hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 435 REGDPVQIEPPIAWAGFAAVQKTHHEV--AAAFETEEN------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~------~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
..... ..-.|...+ ...|++ +...+.... .+...-.++++.+|..+...|+.++|...|+-++..
T Consensus 194 ~~~d~----e~WG~~iV~---~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 194 EKSDK----EQWGWNIVE---FYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccH----hhhhHHHHH---HHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111 011122211 122222 111111111 222334466778888888888888888888888775
Q ss_pred CCCCH----HHHHHHHHHHHhcCCh
Q 009045 507 DPKAA----HIWANLANAYYLTGDH 527 (546)
Q Consensus 507 ~p~~~----~~~~~lg~~~~~~g~~ 527 (546)
+--+- .+.+.|+.+.....+.
T Consensus 267 nVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 267 NVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred hHHHHHHHHHHHHHHHHhccccchh
Confidence 54331 2334455554444333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=93.12 Aligned_cols=129 Identities=21% Similarity=0.221 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+......|+.|++.|+|..|...|++++........ .. .++....
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~--------------------------------~~---~ee~~~~ 252 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS--------------------------------FD---EEEQKKA 252 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc--------------------------------CC---HHHHHHH
Confidence 344567899999999999999999999886322100 00 0111110
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
. ++ -..++.+++.|+.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|++++++.|.|.
T Consensus 253 -~-~~-----k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 253 -E-AL-----KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred -H-HH-----HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 0 01 1357889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.+...+..+..
T Consensus 326 a~~~el~~l~~ 336 (397)
T KOG0543|consen 326 AARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHHHH
Confidence 88888777665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=102.14 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
...|.-|+++|.|++|+.+|.+++..+|.++..+.+.+..|+ +.+.|..|...+..++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl---------------------k~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL---------------------KQKSFAQAEEDCEAAIA 159 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH---------------------HHHHHHHHHHhHHHHHH
Confidence 344555555555555555555555555555555555555555 55555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-RIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
++.....+|...+.+-..+|+..+|.+.++.++++.|++......++.. .+.+..-.......+..+.......+
T Consensus 160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l---- 235 (536)
T KOG4648|consen 160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQIL---- 235 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhc----
Confidence 5555556666666666666666666666666666666554433322211 00000000000000000000000000
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHh-hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA-GESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
..-.-|..+...|.++.++..+.+.+......... .-+..+.+.-+++.++..+.+++..+|.........
T Consensus 236 --------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~ 307 (536)
T KOG4648|consen 236 --------PIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGP 307 (536)
T ss_pred --------cccCcchhhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCC
Confidence 01223445566667777777766644333222222 115577788888888888888888887766555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHh
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
|.+-.-.|...++...++.++.+-
T Consensus 308 ~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 308 PKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred chhHHHHhhhhhcCcchhheeeec
Confidence 666666666667777776665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-08 Score=91.59 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+...+.++.+. ++++|+.+|++++.+.- + -..++..+|.+|... |++++|+++|++++.+....... ...
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a 154 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HSA 154 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hhH
Confidence 444455555444 77788888887777521 1 145778899999998 99999999999999875433211 112
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCChHHHHHHHH
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AA-HIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~-~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
..++. .+|.++...|+|++|++.|++.....-+ +. ..++..+.|++..|++..|...++
T Consensus 155 ~~~~~--------------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 155 AECLL--------------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHH--------------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222 2355666999999999999999875432 12 345678889999999999999999
Q ss_pred HHHhcCCCChhHHHHH
Q 009045 390 KAAKLEPNCMSTRYAV 405 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l 405 (546)
+....+|......-..
T Consensus 221 ~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 221 RYCSQDPSFASSREYK 236 (282)
T ss_dssp HHGTTSTTSTTSHHHH
T ss_pred HHHhhCCCCCCcHHHH
Confidence 9999999776554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-09 Score=88.55 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=99.0
Q ss_pred CChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccc
Q 009045 256 GRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~ 330 (546)
+.|..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. ..++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--------- 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--------- 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------
Confidence 44666666666665555544 6778999999999999999999999999987763 346777777776
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcCC
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY-------LTGDHR-------SSGKCLEKAAKLEP 396 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~al~~~p 396 (546)
..|++++|+..|++++.+.|.....+..+|.++. .+|+++ +|+.+|++++..+|
T Consensus 84 ------------~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 84 ------------SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred ------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999999999988 777776 55666667777788
Q ss_pred CCh
Q 009045 397 NCM 399 (546)
Q Consensus 397 ~~~ 399 (546)
.+.
T Consensus 152 ~~~ 154 (168)
T CHL00033 152 GNY 154 (168)
T ss_pred ccH
Confidence 654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=89.80 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=92.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 348 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (546)
++....+++.+|.++...|++++|+.+|+++++..|+.. ..+..+|.++. ..|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~ 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------------SNGEHD 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------------HcCCHH
Confidence 345677899999999999999999999999999877643 45666666666 999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCC
Q 009045 349 VAKECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 349 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 398 (546)
+|+..+++++...|.+...+..+|.++...|+ +++|+.++++++..+|++
T Consensus 90 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999999999999999999888 577888888888888876
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-08 Score=101.13 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-hcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..-++.|.+.+..+|+..-.|...-..+...++.++|.+.+++|+.. ++.. ..+.+..+.++.++-..| |
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE-----eeEKLNiWiA~lNlEn~y---G- 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE-----EEEKLNIWIAYLNLENAY---G- 1511 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch-----hHHHHHHHHHHHhHHHhh---C-
Confidence 33456899999999999999999999999999999999999999975 2222 222333333344433332 3
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
.-+...+.|++|.+... -...+..|..+|...+.+++|.++|+..++...+...+|..+|..++.+.+-
T Consensus 1512 ----------~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1512 ----------TEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred ----------cHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence 33778888888887643 3568888999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 293 EQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+.|...+.+|++.-|. +.......+.+-+ +.|+.+.+...|+..+..+|...+.|.-
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF---------------------k~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEF---------------------KYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHh---------------------hcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 9999999999999998 5555555565555 9999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
....-...|+.+.+...|++++.+.
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999764
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=94.92 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=133.6
Q ss_pred HhCCCCH---HHH----HHHHHHHHHcCC---hhHHHHHHHHHH---HHhcccchhccchhhHHHHHHHhhccccccccC
Q 009045 145 RKMPKNA---HAH----FLLGLMYQRLGQ---PLKAVSSYEKAE---EILLRCEADIARPELLSLVQIHHAQCLLPESSG 211 (546)
Q Consensus 145 ~~~p~~~---~~~----~~lg~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (546)
...|.+. ++| +.+|......+. .+.|+.+|.+++ .++|... ..+..++.++.... .+|
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a-----~a~~~lA~~h~~~~----~~g 312 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT-----ECYCLLAECHMSLA----LHG 312 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH-----HHHHHHHHHHHHHH----Hhc
Confidence 3345555 444 777777766654 568999999999 7755431 11111122221111 122
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
.. - ...+..+|.+..+++++++|.++.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+
T Consensus 313 ~~----~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 313 KS----E-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred CC----C-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 22 1 467789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.++|++.++++++++|....+-...-.+ .+ -....+.|+..|-+-.+
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMY---------------------VPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHH---------------------cCCchhhhHHHHhhccc
Confidence 9999999999999999876654332222 11 34457788887766443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-09 Score=82.48 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=90.7
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
..+.++.-+..+..|.-++..|++++|...|+-+...+|.++..|..||.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34455666788888888899999999999999888889988999999999999999999999999999888888888888
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
..|.+++ .+|+.+.|+.+|..++. .|.+
T Consensus 110 ~agqC~l---------------------~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 110 FTGQCQL---------------------LMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hHHHHHH---------------------HhCCHHHHHHHHHHHHh-Ccch
Confidence 8877777 88888889888888888 3443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=99.31 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=108.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------ChHHHHHHHHhhHhc--CCCChHHHHHHHHHHHHc
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--------RLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 289 (546)
..+++..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|..+.++..+|..+...
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 4567899999999999999999999999988876642 344566667776664 777788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
|++++|...+++++.++| +..++..+|.++. ..|++++|++.|++++.++|..+..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~---------------------~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE---------------------LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999 4778888888887 8999999999999999999997753
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=93.16 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
......|..|++.|+|..|...|++++..-... ..++.+++.++.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 345567999999999999999999988763211 24677788888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH-HH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GK 386 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~ 386 (546)
+|..+++..|.++. ..|+++.|+..|++++++.|.|-.+...+..+-.+..++.+. .+
T Consensus 289 ~N~KALyRrG~A~l---------------------~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 289 NNVKALYRRGQALL---------------------ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred CchhHHHHHHHHHH---------------------hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777 777788888888888888888877777777777666665544 66
Q ss_pred HHHHHHhcCC
Q 009045 387 CLEKAAKLEP 396 (546)
Q Consensus 387 ~~~~al~~~p 396 (546)
.|.+++..-+
T Consensus 348 ~y~~mF~k~~ 357 (397)
T KOG0543|consen 348 MYANMFAKLA 357 (397)
T ss_pred HHHHHhhccc
Confidence 6777766544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=75.30 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred hHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 482 GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 482 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+.+|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 567899999999999999999999999999999999999999999999999999999988764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=88.36 Aligned_cols=245 Identities=14% Similarity=0.061 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
-...-|.-++...++.+|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+....+..+....
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~----- 82 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFL----- 82 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 34456666778888888888888887754332 3345556677788888888776654444332221111111
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-----AHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
...+.+++..+.+..++.+++.+....+.+.... ......+|.++..++.++++++.|+++++..
T Consensus 83 ----------~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A 152 (518)
T KOG1941|consen 83 ----------LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA 152 (518)
T ss_pred ----------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 1111223444457788888888888877763322 3566778999999999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--
Q 009045 396 PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS-- 473 (546)
Q Consensus 396 p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-- 473 (546)
.++.+....+ .++..+|..+....++++|..+..++.+
T Consensus 153 ~~~~D~~LEl----------------------------------------qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 153 HNNDDAMLEL----------------------------------------QVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hccCCceeee----------------------------------------ehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 6554333211 3577788888888888888877666433
Q ss_pred ------c----hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 474 ------K----MEECAGAGESAFLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 474 ------~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
. ....++|.++..+...|+.-+|.++++++.++. +-.......+|.+|...|+.+.|..-|+.|
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1 112457789999999999999999999998763 223556678999999999999999999999
Q ss_pred HHHhcc
Q 009045 538 LMVYCS 543 (546)
Q Consensus 538 l~~~~~ 543 (546)
+..+.+
T Consensus 273 m~~m~~ 278 (518)
T KOG1941|consen 273 MGTMAS 278 (518)
T ss_pred HHHHhh
Confidence 887754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=91.27 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=87.4
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---ChHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~ 292 (546)
+..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 35678899999999999999988 579999999999999999999999999998776 478999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~ 313 (546)
++|+..|+++++..|+...+.
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999987554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=79.51 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=71.8
Q ss_pred HcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 254 KSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+|+|+.|+..|+++++.+|. +...++.+|.+|+..|++++|+..+++ .+.++.+....+.+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~---------- 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL---------- 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH----------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH----------
Confidence 368999999999999999995 467788899999999999999999999 8888888888887788877
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHH
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
++|++++|++.|+++
T Consensus 70 -----------~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 -----------KLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------HTT-HHHHHHHHHHH
T ss_pred -----------HhCCHHHHHHHHhcC
Confidence 999999999999875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-07 Score=80.22 Aligned_cols=222 Identities=26% Similarity=0.234 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+.+..+...+...+...+. ........+..+...+++..++..+...+. ..+.....+..++..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4557788888888887776 377888899999999999999999999987 688888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHH-HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAA-LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---KAAHIWANLAN 373 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~ 373 (546)
.+..++...+........... ++. ..|+++.|+..+.+++...| .....+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALY---------------------ELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 999999987776444444443 343 88999999999999988776 45666777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
.+...++++.|+..+.+++...+.. ....+..++.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 210 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDD---------------------------------------------DAEALLNLGL 210 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------------chHHHHHhhH
Confidence 7888999999999999999988874 1134555666
Q ss_pred HHHhcccHHHHHHHHHhhccchh--hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 454 VQKTHHEVAAAFETEENELSKME--ECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
.+...+++..++..+...+...+ ...+..++..+...+.++++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666677777777776555443 345556666666666688888888888887776
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-10 Score=97.15 Aligned_cols=179 Identities=9% Similarity=-0.003 Sum_probs=131.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
|+++|.|++|+.+|.+++..+|.++..+.+++.+|+++.+|..|...+..++.++.....+|...|.+-..+|+..+|.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccc---------c-----ccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVL---------A-----GAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.++.+|.+.|++.+..-.++.+-.-+..... + +....-..|..+...|.++.++.++-+-+..+..
T Consensus 187 D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~ 266 (536)
T KOG4648|consen 187 DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDD 266 (536)
T ss_pred hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCc
Confidence 9999999999988776555544321111100 0 0111112355555666666666666655544444
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+.....+ +..|....+++.++...-+++..+|.
T Consensus 267 ~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 267 SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred cccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 3333333 45555555666666555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-08 Score=88.09 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHH-HHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHH
Q 009045 241 QAVVWNTLGLIL-LKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 313 (546)
+...++..|..+ +..|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356777777766 56799999999999999999988 5799999999999999999999999999988875 5667
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+.+|.++. ..|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~---------------------~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQ---------------------DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 77777776 89999999999999999999976543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=81.40 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=99.4
Q ss_pred hHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 268 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+...+..||.++. ..++|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q---------------------~~k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ---------------------LKKQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---------------------HHHHH
Confidence 334556667888999999999999999999999999999999999999988887 88999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 348 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++|+..|..+..++++++...+..|.||+.+|+.+.|+.+|+.++. .|.+
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999999999999999999999999998 4543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=92.41 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=109.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
+-.++...++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl------ 245 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL------ 245 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------
Confidence 445566678999999999999988865 66779999999999999999999999999999888887777777
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
..++++.|+...+++++..|.+...|..|+.+|..+|+++.|+..++.+--
T Consensus 246 ---------------~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 ---------------SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred ---------------hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 889999999999999999999999999999999999999999988875543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-08 Score=74.92 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN---HPAALINY 316 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 316 (546)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467778888888888888888888888764433 457778888888888888888888888877776 44555555
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
+.++. ..|++++|+..+-.++.
T Consensus 82 Al~L~---------------------~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALY---------------------NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 55554 77788888877776664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.2e-08 Score=88.84 Aligned_cols=151 Identities=19% Similarity=0.075 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 346 AVNVAKECLLAALKADPK------AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
++++|+.+|++++.+.-. -..++..+|.+|... |++++|+.+|++++.+..........
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a-------------- 154 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA-------------- 154 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH--------------
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH--------------
Confidence 677777777777665211 256778899999998 99999999999999875443321111
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--------hhh-hHHhhHHHHHHH
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEE-CAGAGESAFLDQ 489 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~la~~~~~ 489 (546)
...+..++.++...|+|++|+..|.+.... ... ..++..+.|++.
T Consensus 155 --------------------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 155 --------------------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --------------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 135678889999999999999999884331 111 334577779999
Q ss_pred hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--hcCChHHHHHHHHH
Q 009045 490 ASAVNVAKECLLAALKADPKA-----AHIWANLANAYY--LTGDHRSSGKCLEK 536 (546)
Q Consensus 490 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~--~~g~~~~A~~~~~~ 536 (546)
.|++..|...+++....+|.. ......|-.++. ....+..|+.-|.+
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 999999999999999998854 334444444543 23345555555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.8e-09 Score=72.77 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
..|++++|+..|++++..+|++..+++.+|.+|+..|++++|...+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45677777777777777777777777777777777777777777777777777777666665554
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.4e-07 Score=76.23 Aligned_cols=177 Identities=17% Similarity=0.164 Sum_probs=134.2
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHc---
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQS--- 289 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~--- 289 (546)
++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+..+++-+.+.|.++ .+++..|.+++..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 57899999999999999988765 56899999999999999999999999999988764 4677888887653
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-
Q 009045 290 -----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 363 (546)
Q Consensus 290 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 363 (546)
.-..+|+..|+..+...|+..-+-.....+-... ...+..-+.+|..|.+.|.+-.|+.-++.+++..|+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN----DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2245788889999999998754322222111100 001233456789999999999999999999999777
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..+++..+..+|..+|-.++|...-.-.-.-.|++.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 356788889999999999999776544434445443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-06 Score=77.29 Aligned_cols=220 Identities=25% Similarity=0.280 Sum_probs=176.8
Q ss_pred hHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--hcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPK--NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI--LLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
..+...+...+...+. ........+..+...+.+..+...+...+.. .+.. ...+...+..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-- 105 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL------------AEALLNLGLLL-- 105 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch------------HHHHHHHHHHH--
Confidence 3444556666666665 4788899999999999999999999998863 2111 12222233222
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCChHHHHHHHHhhHhcCC---CChHHHHHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIA 285 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~ 285 (546)
...+++..++..+.+++...+.........+. ++...|+++.|+..|.+++...| .....+...+..
T Consensus 106 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 106 ---------EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred ---------HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 34455799999999999988877666666666 89999999999999999988777 456677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+...++++.|+..+.+++...+. ....+..++..+. ..+++..|+..+..++...|..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL---------------------KLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH---------------------HcccHHHHHHHHHHHHhhCccc
Confidence 88999999999999999999998 5777777777776 7789999999999999999987
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
...+..++..+...+.++++...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 788888888888888899999999999999997
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-07 Score=92.82 Aligned_cols=253 Identities=11% Similarity=0.056 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN----CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
-.+..+.|++.+..+|+....|...-..+.+.++.++|.+.+++||.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 355677888889999999999999888899999999999999999874 3322 34555555555566777788888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
|++|-+... ....+..|..+|. ..+.+++|.++|+..++...+....|..+|..++..
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~---------------------k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYE---------------------KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHH---------------------HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 888887643 2344555655555 888999999999999999888899999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhc
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 458 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (546)
.+-++|...+.+|++.-|.... .......+++.++.
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eH--------------------------------------------v~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEH--------------------------------------------VEFISKFAQLEFKY 1613 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhh--------------------------------------------HHHHHHHHHHHhhc
Confidence 9999999999999999887321 12344556667778
Q ss_pred ccHHHHHHHHHhhccch--hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc-CChHHHHHH
Q 009045 459 HEVAAAFETEENELSKM--EECAGAGESAFLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAYYLT-GDHRSSGKC 533 (546)
Q Consensus 459 ~~~~~A~~~~~~~l~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~ 533 (546)
|+.+.+...+...+... ..+.|.-....-.+.|+.+.+...|++++.+ .|.....+|..=.-|.+. |+-+.....
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888887766544 4567876666677788889999999999886 455666666666666544 665555555
Q ss_pred HHHHHHHhc
Q 009045 534 LEKVLMVYC 542 (546)
Q Consensus 534 ~~~al~~~~ 542 (546)
=.+|++...
T Consensus 1694 KarA~EYv~ 1702 (1710)
T KOG1070|consen 1694 KARAKEYVE 1702 (1710)
T ss_pred HHHHHHHHH
Confidence 566766553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=80.11 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=92.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
++..|+|++|..-|..+|...|.. ..+|.+.|.++++++.++.|+..+.++|+++|.+..++...|.+|.++..|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 578899999999999999999865 347888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
++|++.|.+++..+|....+.-....
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 99999999999999998876654443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.7e-06 Score=81.49 Aligned_cols=236 Identities=13% Similarity=0.114 Sum_probs=150.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++-..+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 56788888888888888888888888888888888888888888877777666677777778888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI-WANLANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~ 376 (546)
+|+++.+.+|. .+....+-.+|. +.+.|.+-.+.--+..+..|.++-. |..+..+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayv---------------------R~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYV---------------------REKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 88888888887 555555555555 5555555444444444556665543 333333333
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 456 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (546)
.....+.... .....++. ..+...+... . ......=....-.++.
T Consensus 157 s~~~~~~~~~-------------~i~l~LA~--------------------~m~~~~l~~~-g-k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 157 SIFSENELLD-------------PILLALAE--------------------KMVQKLLEKK-G-KIESEAEIILYLLILE 201 (932)
T ss_pred hccCCccccc-------------chhHHHHH--------------------HHHHHHhccC-C-ccchHHHHHHHHHHHH
Confidence 3322222211 11112211 1112222222 1 1111111223345667
Q ss_pred hcccHHHHHHHHHhhcc----chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 457 THHEVAAAFETEENELS----KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 457 ~~~~~~~A~~~~~~~l~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
.+|++++|...+...+. +.+..........+...++|.+-.+...+.+..++++
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78899999999865333 2222223345567888999999999999999999987
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-05 Score=69.32 Aligned_cols=295 Identities=18% Similarity=0.120 Sum_probs=194.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 236 (546)
-|.+-.-.|+-..|.+.-.++-++...+ .+-+..+..... .+-.|+++.|.+-|+.++.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssD-----qepLIhlLeAQa----------------al~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSD-----QEPLIHLLEAQA----------------ALLEGDYEDARKKFEAMLD 148 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhcc-----chHHHHHHHHHH----------------HHhcCchHHHHHHHHHHhc
Confidence 3555666788888888888877554322 222332222222 2346888999999998874
Q ss_pred cCcccHHHHHHHHH--HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HH
Q 009045 237 SDTRQAVVWNTLGL--ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-AL 313 (546)
Q Consensus 237 ~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~ 313 (546)
+|+. ..+-..|. --.+.|..+.|+.+-.++-...|.-..++...-......|+|+.|++..+......--... +-
T Consensus 149 -dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 149 -DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred -ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 4432 22222222 2356899999999999999999999999988888889999999999999877643211111 11
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
...+.++..+ +.. .-.-+...|...-.+++++.|+....-..-+..++..|+..++-..++.+.+
T Consensus 227 R~rAvLLtAk--------------A~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 227 RSRAVLLTAK--------------AMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHHHH--------------HHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1222222211 000 1234578899999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHH---Hh
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETE---EN 470 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---~~ 470 (546)
..|.-..+. ... +.+.|+.......- ..
T Consensus 292 ~ePHP~ia~-lY~------------------------------------------------~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 292 AEPHPDIAL-LYV------------------------------------------------RARSGDTALDRLKRAKKLE 322 (531)
T ss_pred cCCChHHHH-HHH------------------------------------------------HhcCCCcHHHHHHHHHHHH
Confidence 998632211 110 11111111110000 11
Q ss_pred hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 009045 471 ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKVLM 539 (546)
Q Consensus 471 ~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 539 (546)
.+++++....+..+..-+..|++..|..--+.+....|.. .++..|+.+-... |+-.++..++-+++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4455566666666677777788888888778777777753 4666777776544 888888888777764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=70.68 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=60.6
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998777665543
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-07 Score=71.46 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+.+++.+|.++-.+|+.++|+..|++++...... ..+++.++..+. .+|++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------------~LG~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------------NLGRYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 3578999999999999999999999999975544 345666666665 9999999999
Q ss_pred HHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 353 CLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 353 ~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+++++...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999888 888889999999999999999999988775
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=69.83 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..+|...++|++|++++++++.++|+++..+..+|.++..+|++.+|+..|+++++..|++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888877665433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-06 Score=80.46 Aligned_cols=296 Identities=13% Similarity=0.053 Sum_probs=163.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
..|.+...+|..++|...|++.-..+ ++ +. + |...|.+++|.+..+.--
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D-----------Ll------NK---l-----------yQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD-----------LL------NK---L-----------YQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-----------HH------HH---H-----------HHhcccHHHHHHHHhhcc
Confidence 34556667777788888777765432 10 00 0 334566677766554322
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------hcCC----------CChHHHHHHHHHHHHcCCHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------AVDP----------NNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------~~~p----------~~~~~~~~la~~~~~~g~~~~A 295 (546)
++. --..|++.+.-+...++.+.|+++|+++- .-+| .+...|...|......|+.+.|
T Consensus 854 RiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 854 RIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 222 23467777777777788888888887651 1122 2334555666666677777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
+.+|..+-. |+.+.. +..-+|+.++|-...++ ..+..+.+.+|+.|
T Consensus 932 l~~Y~~A~D--------~fs~Vr---------------------I~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 932 LSFYSSAKD--------YFSMVR---------------------IKCIQGKTDKAARIAEE-----SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHhhh--------hhhhee---------------------eEeeccCchHHHHHHHh-----cccHHHHHHHHHHh
Confidence 777766532 222222 22256667766655443 45677888999999
Q ss_pred HHcCChHHHHHHHHHHHhc------CCCC--hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKL------EPNC--MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~------~p~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
...|++.+|+..|.++-.. ...+ .+-+.+++...-. ..+.. ....+.+. +..
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~---------~d~v~----aArYyEe~-------g~~ 1037 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG---------SDLVS----AARYYEEL-------GGY 1037 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc---------hhHHH----HHHHHHHc-------chh
Confidence 9999999999988876433 2221 1122222221000 00000 00011110 001
Q ss_pred HHHHHHHHHhcccHHHHHHH------------HHhhccch-hhhHHhhHHHHHHHhccHHHHHHHHH------HHHHh--
Q 009045 448 WAGFAAVQKTHHEVAAAFET------------EENELSKM-EECAGAGESAFLDQASAVNVAKECLL------AALKA-- 506 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~------------~~~~l~~~-~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~-- 506 (546)
......+|.+.|.+.+|++. ..+.+++. ++..+..-+..+....+|++|+..+- .|+++
T Consensus 1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12223445555555555443 22233322 33444456666777777777776543 33332
Q ss_pred --------------CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 507 --------------DPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 507 --------------~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
.|. ....+..+|.+..++|.|..|-+-|.+|=
T Consensus 1118 ~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1118 NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 121 14578889999999999999998887763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-06 Score=69.78 Aligned_cols=244 Identities=14% Similarity=0.055 Sum_probs=163.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+-.|+|..++..-.+..... ........+.+.|..+|++..-+......- .....+...++.....-++.+.-+..
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 44677888887777665443 667777888888888888877665544332 12244555566655555665555555
Q ss_pred HHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 299 ~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
..+.+........ .+..++ |.++...|++++|++...+. .+.++...--.++.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~a--------------------a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLA--------------------AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHhhccchhHHHHHHh--------------------hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHH
Confidence 5444433222222 232222 22334889999999887763 345666666778889
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
+.+++-|...++++.+++.+.... .++ .+|..++. .
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLt--QLA---------------------------------------~awv~la~---g 185 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLT--QLA---------------------------------------QAWVKLAT---G 185 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHH--HHH---------------------------------------HHHHHHhc---c
Confidence 999999999999998887653211 121 23333322 2
Q ss_pred cccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 458 HHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.+++..|+-.|+..-+ +.......+.+.|.+.+|+|++|...++.++..++++++++.++-.+-...|...++..-+-
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 2357788888887555 33345667889999999999999999999999999999999999999999998866665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-07 Score=86.89 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.++++.|+..|++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46689999999999998875 566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
++....|++...|..|+.+|. ..|+++.|+..++.+-
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi---------------------~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYI---------------------QLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHH---------------------hcCCHHHHHHHHhcCc
Confidence 999999999999999999998 9999999998777543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-07 Score=79.42 Aligned_cols=97 Identities=14% Similarity=0.242 Sum_probs=88.7
Q ss_pred cChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 292 (546)
+..|+|..|...|...++..|+. +.+++.||.+++.+|+|++|...|..+++..|+. +++++.+|.+...+|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 46678899999999999999976 6799999999999999999999999999987765 68899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
++|...|+++++..|+...+...
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999998877543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=75.08 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+-.-|.-++..|+|.+|..-|..+|.+.|..+ ..|.+.|.+.++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557788899999999999999999988653 3556667777777777777777777777777666666665655
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
|. +...+++|++.|.+.++.+|....+...+.
T Consensus 178 ye---------------------k~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 178 YE---------------------KMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HH---------------------hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55 556667777777777766666554444333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00059 Score=68.93 Aligned_cols=222 Identities=13% Similarity=0.013 Sum_probs=150.7
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..+|...+.++++.+|+..-+...-|..+.++|+.++|..+++..-...+.+ ... ...+-.+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D------~~t------Lq~l~~~------ 86 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD------DLT------LQFLQNV------ 86 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc------hHH------HHHHHHH------
Confidence 3677778888999999999999999999999999999997666544432221 111 1112222
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH-HHHHHHHHHHcCC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC-IGNLGIAYFQSGD 291 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~ 291 (546)
|.+.+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+=.+.--+..+..|+++.. |.-+..+......
T Consensus 87 -----y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 87 -----YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred -----HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence 34566779999999999999999 8888888889999888877666655666677776543 4444444433333
Q ss_pred HH---------HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH-HHh-
Q 009045 292 ME---------QSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA-ALK- 359 (546)
Q Consensus 292 ~~---------~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~- 359 (546)
.+ -|...+++.++.. +-...+ -+.+|. .++...|++++|.+.+.. ..+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a---E~~Lyl-----------------~iL~~~~k~~eal~~l~~~la~~ 220 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEA---EIILYL-----------------LILELQGKYQEALEFLAITLAEK 220 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHH---HHHHHH-----------------HHHHhcccHHHHHHHHHHHHHHh
Confidence 22 3555666666554 111111 111111 234478999999999943 233
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+.+...-......+...++|.+-.+...+.+...+++
T Consensus 221 l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 221 LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 334455555566778888999999999999999999887
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-06 Score=77.58 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=108.1
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhh-HhcCCC--------ChHHHHHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL-LAVDPN--------NCDCIGNLGIAYFQ 288 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~ 288 (546)
++...++..+....+.++.+..+.+.+++..+..++..|++.+|.+.+... +...|. ...+|.++|.+++.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 345556666666666667677788889999999999999999999987654 222332 23467899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc-----cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS-----VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+|.|.-+..+|.++++. ......-| + +... ........++.|..+...|+.-.|.++|.+++.....
T Consensus 296 ~~~y~~~~~~F~kAL~N----~c~qL~~g--~--~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRN----SCSQLRNG--L--KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHhcc--C--CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999961 00000000 0 0000 0001222334455555999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009045 364 AAHIWANLANAYYL 377 (546)
Q Consensus 364 ~~~~~~~l~~~~~~ 377 (546)
++..|..++.|++.
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999999874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=66.99 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=61.7
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.++.+.+++++|++++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|++.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999999999987665443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00017 Score=62.29 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
+......-|.+++..|++++|+....+. .+.++...-..++.++.+++-|.+.++++.+++.+ ..+..|+..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence 3345666778899999999999988763 45667777778899999999999999999887654 3455566665
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
... ....+.+.+|.-+|+..-+..|..+......+.|++.+|+|++|...++.++..++++++
T Consensus 180 v~l-----------------a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 180 VKL-----------------ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHH-----------------hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 532 114456899999999999988888999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 009045 401 TRYAVAV 407 (546)
Q Consensus 401 ~~~~l~~ 407 (546)
.+.++..
T Consensus 243 tL~Nliv 249 (299)
T KOG3081|consen 243 TLANLIV 249 (299)
T ss_pred HHHHHHH
Confidence 7766644
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-05 Score=66.51 Aligned_cols=173 Identities=17% Similarity=0.142 Sum_probs=123.0
Q ss_pred hhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHHhhhc
Q 009045 343 QASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR---YAVAVSRIKDAERS 416 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~l~~~~~~ 416 (546)
+.|++++|+..|+.+....|. ...+...++.++++.+++++|+...++-+++.|.++.+- +..++..+......
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 899999999999999999887 457889999999999999999999999999999887654 45555555444444
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 496 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A 496 (546)
.........+...+..++..-.... -.+.+-..+..+-.. -..--..+|..|.+.|.+..|
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~~d~------------------LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKLNDA------------------LAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHH------------------HHHHHHHHHHHHHHhcChHHH
Confidence 4445555556666666655533211 111111111111111 111123566789999999999
Q ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 009045 497 KECLLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 497 ~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
+..++.+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999987765 678888999999999999987763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-06 Score=66.71 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA-VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+.......+.+..-|. ..-.+.||..+...|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++..
T Consensus 73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4444444455555565 34577899999999999999999999986 466788999999999999999999999999999
Q ss_pred hhCCCC--HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 304 LKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 304 ~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
+.+|.. ++....++.++- ..|++.+|...|+.++...|+ +......+..+..+|+.
T Consensus 152 e~~pa~r~pd~~Ll~aR~la---------------------a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLA---------------------AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRL 209 (251)
T ss_pred hcCCccCCCCchHHHHHHHH---------------------hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcch
Confidence 988753 444555566555 899999999999999999987 67777889999999998
Q ss_pred HHHHHHHHHHHh
Q 009045 382 RSSGKCLEKAAK 393 (546)
Q Consensus 382 ~~A~~~~~~al~ 393 (546)
.+|...+....+
T Consensus 210 ~ea~aq~~~v~d 221 (251)
T COG4700 210 REANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHHHH
Confidence 888877766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-06 Score=75.56 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAA 318 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 318 (546)
.+..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+++.|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999976 6899999999999999999999999999987765 566777777
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+.. .+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~---------------------~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLG---------------------RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHH---------------------HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 776 8999999999999999999997766543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=87.10 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=66.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
.+|+++.+++++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999855 9999999999999999999999999973
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=68.43 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=84.7
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCC
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD 291 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 291 (546)
.++.|+|.+|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++ .+++..|.+++.+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 367899999999999999988854 56899999999999999999999999999999774 578999999998876
Q ss_pred ---------------HHHHHHHHHHHHhhCCCCHHH
Q 009045 292 ---------------MEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 292 ---------------~~~A~~~~~~al~~~p~~~~~ 312 (546)
..+|...|++.++..|+...+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 889999999999999988754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-08 Score=69.18 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----C---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----D---PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+-..++.++|.+|..+|++++|+.+|++++++ . |....++.++|.++..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 556788999999999999999999999999976 1 1236689999999999999999999999999763
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=68.35 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=55.3
Q ss_pred hhHHhhHHHHHHHhccHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 477 ECAGAGESAFLDQASAVNVAKECLLAALKA---DP-K---AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..++.++|.+|...|++++|+.+|++++++ .+ + .+.++.++|.++...|++++|+++|+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 345678888999999999999999999975 12 2 266889999999999999999999999999874
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-07 Score=73.10 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC--
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-- 291 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 291 (546)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|+.+|.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999887643 5678888999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHH
Q 009045 292 ---------MEQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 292 ---------~~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
|++|..+|+++...+|++...+..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 788999999999999998755443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-06 Score=67.44 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678899999999999999999999999998754 578999999999999999999999999999998875 455
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
..|.++.
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5665554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-06 Score=81.36 Aligned_cols=246 Identities=12% Similarity=0.077 Sum_probs=168.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHh--------hHhc---CCCChHHHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS--------LLAV---DPNNCDCIGNLGIAY 286 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------al~~---~p~~~~~~~~la~~~ 286 (546)
|...|+.+.|.+..+-+- ...+|-+++....+..+.+-|.-++-. ++.. +|+ +.-...+.+.
T Consensus 738 yvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 566777799887765432 346899999999999888888766532 2222 333 3334456777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
..+|..++|...|++.-+.+ .+-.+|. ..|.+++|.+..+.--.+. --.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D--------LlNKlyQ---------------------s~g~w~eA~eiAE~~DRiH--Lr~ 859 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD--------LLNKLYQ---------------------SQGMWSEAFEIAETKDRIH--LRN 859 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH--------HHHHHHH---------------------hcccHHHHHHHHhhcccee--hhh
Confidence 89999999999999876532 2333343 7899999988776533222 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
.|++.+.-+...++.+.|+++|+++-...-+ ...+..... ..+...++.. .++.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafe----v~rmL~e~p-----------------~~~e~Yv~~~-----~d~~ 913 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFE----VFRMLKEYP-----------------KQIEQYVRRK-----RDES 913 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHH----HHHHHHhCh-----------------HHHHHHHHhc-----cchH
Confidence 7888999999999999999999986321100 000000000 0111111211 2346
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.|.-+|..+...|+.+.|+..|..+- -|+.+..+.+-+|+.++|-..-++ ..+-.+.|.||+.|...|+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHH
Confidence 78889999999999999999998643 356666677788888888776554 4677789999999999999
Q ss_pred hHHHHHHHHHHH
Q 009045 527 HRSSGKCLEKVL 538 (546)
Q Consensus 527 ~~~A~~~~~~al 538 (546)
..+|+..|.+|-
T Consensus 983 v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=86.32 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=55.9
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI---WANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
++.....++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555677788888888888888888888888888888754 888888888888888888888888886
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00032 Score=65.73 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 151 AHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..++.++|..+...| +...++++++..+.. .+...--++.+..+|.++ +.-..+++.|.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~---------~is~~veart~LqLg~lL----------~~yT~N~elAk 67 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQF---------QISFLVEARTHLQLGALL----------LRYTKNVELAK 67 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHHHH----------HHHhccHHHHH
Confidence 467788899999999 899999999998876 333334456666666655 33456689999
Q ss_pred HHHHHHHhcC---ccc----HHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCCh----HHHHHHHHHHHHcCCHHHHH
Q 009045 229 SKLKESMQSD---TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNC----DCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 229 ~~~~~al~~~---p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~ 296 (546)
..++++..+. |.. .++...++.+|.... .+..|...+++++++....+ ...+.|+.++.-..++..|+
T Consensus 68 sHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~ 147 (629)
T KOG2300|consen 68 SHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL 147 (629)
T ss_pred HHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence 9999987653 332 346677899988877 88999999999999876654 35667888888888888887
Q ss_pred HHH
Q 009045 297 KCF 299 (546)
Q Consensus 297 ~~~ 299 (546)
+.+
T Consensus 148 elL 150 (629)
T KOG2300|consen 148 ELL 150 (629)
T ss_pred HHH
Confidence 764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=64.77 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=82.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----hHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 294 (546)
.+.|+++.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+.+++++.... ..++...|.+|..+|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 356778999999999999999999999999999999999999999999999985543 4678899999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 009045 295 SAKCFQDLILKDQNHP 310 (546)
Q Consensus 295 A~~~~~~al~~~p~~~ 310 (546)
|...|+.+.++.....
T Consensus 134 AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 134 ARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHhHHHHHHhCCHHH
Confidence 9999999998875543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=70.16 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH---HHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC---LDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|+.|.+.++.....+|.+.+.+++.|.+++.. +.. -.....+++|+.-|++++.++|+...++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL--------------Aqfk~g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL--------------AQFKQGPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH--------------HHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH--------------HhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 67899999999999999999999999888743 111 1133568899999999999999999999
Q ss_pred HHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 369 ANLANAYYLTGD-----------HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 369 ~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..+|.+|...+. |++|..+|+++...+|++...+..+..
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999987654 789999999999999999876665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-05 Score=63.23 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=127.8
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc----C
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS----D 238 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~----~ 238 (546)
-.+++++|.++|.++-... . -..+|..|=..|.++-+. +
T Consensus 26 g~~k~eeAadl~~~Aan~y-------------k------------------------laK~w~~AG~aflkaA~~h~k~~ 68 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMY-------------K------------------------LAKNWSAAGDAFLKAADLHLKAG 68 (288)
T ss_pred CCcchHHHHHHHHHHHHHH-------------H------------------------HHHhHHHHHHHHHHHHHHHHhcC
Confidence 3458999999999987652 1 123334444444444322 1
Q ss_pred -cc-cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 009045 239 -TR-QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 239 -p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 309 (546)
.+ -+..|...+.+|. .++..+|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-......
T Consensus 69 skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 69 SKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred CchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 12 2445666666664 4599999999999999865443 3455788888764 89999999999998765433
Q ss_pred HH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCh
Q 009045 310 PA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDH 381 (546)
Q Consensus 310 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~ 381 (546)
.. +.-+...+- .+.+-...++|.+|+..|++.....-++. ..++.-|.|++-..+.
T Consensus 148 es~ssANKC~lK----------------vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 148 ESVSSANKCLLK----------------VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred hhhhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH
Confidence 21 122222111 23444588999999999999887655543 2345567888888999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
-.+...+++..+++|.....+-..
T Consensus 212 v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHhcCCcccccHHHH
Confidence 999999999999999987766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00011 Score=59.66 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=104.1
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhhCccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL-KDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
....+.=+.+.......+.+...|. ..-.+.||....++|++.+|...|++++. +..++...+..++...+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf------- 135 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF------- 135 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-------
Confidence 3334444555666666666666676 45578899999999999999999999985 56677777888888777
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+++..|...+++..+.+|. .+.....+|.++...|++.+|...|+.++...|+.
T Consensus 136 --------------a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 136 --------------AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred --------------hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 889999999999999998886 67788889999999999999999999999998864
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-05 Score=60.07 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~ 319 (546)
.+-..|.++...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++...... ++...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR--- 121 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR--- 121 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH---
Confidence 34456888889999999999999999999999999999999999999999999999999998655432 23334
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
|.+|...|+-+.|...|+.+-++...
T Consensus 122 ------------------g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 ------------------GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred ------------------HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 44455899999999999988776443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00018 Score=72.87 Aligned_cols=291 Identities=14% Similarity=0.042 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc-----Cccc
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS-----DTRQ 241 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~ 241 (546)
..+|..+|+.+.+.. .......++.++...+.- ...|.+.|+.+|+.+.+. .-.+
T Consensus 228 ~~~a~~~~~~~a~~g--------------~~~a~~~~g~~y~~G~~g------~~~d~e~a~~~l~~aa~~~~~~a~~~~ 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--------------HSEAQYALGICYLAGTYG------VTQDLESAIEYLKLAAESFKKAATKGL 287 (552)
T ss_pred hhHHHHHHHHHHhhc--------------chHHHHHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467888888887762 122333444443322222 458899999999999761 1124
Q ss_pred HHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 009045 242 AVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
+.+.+.+|.+|.+.. ++..|+.+|.++-.. +++.+.+.+|.++..-. ++..|.++|..|.+. .+..+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~ 363 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAI 363 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHH
Confidence 557888999998853 678899999998876 45778889999987765 578999999998764 477888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-GDHRSSGKCLEKAA 392 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al 392 (546)
+.++.++.. | .....+...|..+|.++.+.. ++.+...++..+..- +++..+...+....
T Consensus 364 ~~la~~y~~---------------G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 364 YRLALCYEL---------------G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHh---------------C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 899988873 2 124567899999999999887 455555565555433 77777776666555
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
...-........... . ... ...... ....+...++..+.+..
T Consensus 425 ~~g~~~~q~~a~~l~--~-~~~-----------------------~~~~~~------------~~~~~~~~~~~~~~~a~ 466 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLL--D-QSE-----------------------EDLFSR------------GVISTLERAFSLYSRAA 466 (552)
T ss_pred HhhhhHHhhHHHHHH--H-hcc-----------------------cccccc------------ccccchhHHHHHHHHHH
Confidence 443332211110000 0 000 000000 00123344445555555
Q ss_pred cchhhhHHhhHHHHHHHh----ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHh
Q 009045 473 SKMEECAGAGESAFLDQA----SAVNVAKECLLAALKADPKAAHIWANLANAYYLT---GDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~ 541 (546)
...+..+...+|.+|... .+++.|...|.++.... +...+++|.++..- .....|..+|.++.+.-
T Consensus 467 ~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 467 AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 556666666677666654 34888888888887766 78888888888431 12678888888877643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-05 Score=64.02 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.++++.+ |..+.....||.+.++.|+.+.|..+|++.-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44555555543 3567778889999999999999999999998 6778889999999999999999999999665
Q ss_pred hhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 304 LKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 304 ~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+... .+.....+.+.+ +.-.+++..|...|.+++..+|.++.+..+.+.|+..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i---------------------~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL---------------------HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh---------------------eecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 3321 112223333333 3478899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.|+..+|++.++.++...|...
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999754
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=71.78 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=84.7
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++....|..|+.+|.+++.++|..+..|.+.+.+|++..+|+.+....+++++++|+....++.+|........|++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 009045 298 CFQDLILK 305 (546)
Q Consensus 298 ~~~~al~~ 305 (546)
.+.++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 99999755
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.5e-07 Score=51.84 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 499 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 499 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
+|+++|+++|+++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00023 Score=61.29 Aligned_cols=227 Identities=14% Similarity=0.117 Sum_probs=127.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------------------CDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
+...|...-.++.+...+++|...+...-.++..+ .......|.+...+|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34567777778888888888887776655543211 11233446666677877777665554
Q ss_pred HHhhC------------CC-CHHHHH-HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-CCCHH
Q 009045 302 LILKD------------QN-HPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-PKAAH 366 (546)
Q Consensus 302 al~~~------------p~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 366 (546)
....- |. ....|. .++.+.. .+..++.-.|.|.-.+..+.+.++.+ |..+.
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy--------------~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMY--------------SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--------------HHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 43210 00 111111 1111111 12344456666777777777777666 44666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
....||.+-++.|+.+.|..+|+.+-+... .+.... ..-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~------------------------------------kL~~~q----~~~~ 253 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQ------------------------------------KLDGLQ----GKIM 253 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------------------------------hhhccc----hhHH
Confidence 666677777777777777666665542111 011111 1123
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAY 521 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 521 (546)
+..+.+.++.-.+++..|...+.+.+. +.+..+..+.|.|++..|+..+|++.++.+++..|.. ....++|..+|
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 445566666666777777777766443 4444555567777777777777777777777777753 23445555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=64.53 Aligned_cols=153 Identities=8% Similarity=-0.010 Sum_probs=127.5
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-CCCC---hHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-DPNN---CDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~ 294 (546)
...|++.+|....++.++..|.+..++..--.+++..|+...-...+++++-. +++. ..+.-.++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677799999999999999999999988889999999999999999999877 6655 4566677888899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----AAHIWAN 370 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 370 (546)
|.+.-++++++++.+..+...++.++. ..|++.++.+++.+.-..-.. ...-|..
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVle---------------------m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLE---------------------MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHH---------------------hcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 999999999999999999888888877 788999999988875443222 1123455
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al 392 (546)
.+.++...+.|+.|++.|.+-+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHH
Confidence 6888889999999999998754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0045 Score=59.27 Aligned_cols=181 Identities=10% Similarity=0.044 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHhhhc
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGD--------------HRSSGKCLEKAAKLEPNC-MSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~-~~~~~~l~~~~l~~~~~~ 416 (546)
-.|++++..-+..+++|+.-+.-+...++ .+++..+|++++...-.. ...++.+ ....+....
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~--a~~eE~~~~ 343 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL--ADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHhcc
Confidence 34556666556667777666555555544 567777777777543322 1112222 112211111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh--HHhhHHH-HHHHhccH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC--AGAGESA-FLDQASAV 493 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~la~-~~~~~g~~ 493 (546)
....+......+.+... ... +...+|..+-..-.+..-...|...|.++-+..-.. .+..-|. -|.-.++.
T Consensus 344 ~n~~~~~~~~~~~ll~~----~~~--~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKI----EDI--DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK 417 (656)
T ss_pred cchhhhhHHHHHHHHhh----hcc--CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh
Confidence 11011111111111111 111 122345555555555556677777777755433222 2222221 34567889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 494 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
.-|...|+-.++..++.+..-......+...++-..|...|++++..
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999999999999999988888888889999999999999998875
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00064 Score=68.94 Aligned_cols=149 Identities=23% Similarity=0.167 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CChHHHHHHHHhhHhc-----CCCChHHHHHHHHHHHHcC--
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-----GRLQSSISVLSSLLAV-----DPNNCDCIGNLGIAYFQSG-- 290 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 290 (546)
+...|..+++.+... .+..+...+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888888754 4677888888888764 6899999999999771 1225678899999998853
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 291 ---DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 291 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
+...|..+|.++-... ++.+.+.+|.++.. |. ...++..|.++|..+... .+..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~---------------g~---~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET---------------GT---KERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc---------------CC---ccccHHHHHHHHHHHHHc--CChHH
Confidence 6788999999998765 56778888988872 11 235788999999999865 56888
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 009045 368 WANLANAYYL----TGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 368 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~ 395 (546)
.+.++.+|.. ..+...|..+|+++.+..
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8999998875 357899999999999987
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.4e-06 Score=53.28 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
++..+|.+|...|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-06 Score=81.25 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=97.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.+..+.|+.|+..|.++++++|+.+..+-+++.++.+.+++..|+..+.++++++|....+|+..|.+...++++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.|+....+.|+++.+...+..+-
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999998876665554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00067 Score=63.74 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=98.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
+.....+.+.+++..+..++..|++.+|.+.+...=-. . .+... ..-....|.....+|-+ +++.+
T Consensus 232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~-----~~g~~--~T~q~~~cif~NNlGcI----h~~~~ 297 (696)
T KOG2471|consen 232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIH---K-----EAGGT--ITPQLSSCIFNNNLGCI----HYQLG 297 (696)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccc---c-----ccCcc--ccchhhhheeecCcceE----eeehh
Confidence 34445678899999999999999999999887654211 0 11110 01112344555666666 67778
Q ss_pred hHHHHHHHHHHHHhc---------Cc---------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 223 ELEEILSKLKESMQS---------DT---------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 223 ~~~~A~~~~~~al~~---------~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
.|.-+..+|.++++. .| ....++++.|..|...|+.-.|.++|.+++.....++..|..++.
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 889999999999851 11 235689999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009045 285 AYFQ 288 (546)
Q Consensus 285 ~~~~ 288 (546)
+...
T Consensus 378 cCim 381 (696)
T KOG2471|consen 378 CCIM 381 (696)
T ss_pred HHHH
Confidence 8865
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00068 Score=66.83 Aligned_cols=346 Identities=14% Similarity=0.136 Sum_probs=191.0
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChhH
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLK 169 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~ 169 (546)
-..+.++-+.|+.+..+ ..|++++++ +.+|.. .++|.++.+-+ -|.. ...--..|.-+...|+++.
T Consensus 658 lik~elydkagdlfeki-~d~dkale~--------fkkgda-f~kaielarfa---fp~evv~lee~wg~hl~~~~q~da 724 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKI-HDFDKALEC--------FKKGDA-FGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDA 724 (1636)
T ss_pred HHhhHHHHhhhhHHHHh-hCHHHHHHH--------HHcccH-HHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHH
Confidence 34677888899999998 899999988 445554 24444432222 2322 2223345777888999999
Q ss_pred HHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHH
Q 009045 170 AVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 249 (546)
Q Consensus 170 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 249 (546)
|+..|-.+--+- ..+. ..+...+|.+|+..++....... ....|-.++
T Consensus 725 ainhfiea~~~~-------------kaie------------------aai~akew~kai~ildniqdqk~-~s~yy~~ia 772 (1636)
T KOG3616|consen 725 AINHFIEANCLI-------------KAIE------------------AAIGAKEWKKAISILDNIQDQKT-ASGYYGEIA 772 (1636)
T ss_pred HHHHHHHhhhHH-------------HHHH------------------HHhhhhhhhhhHhHHHHhhhhcc-ccccchHHH
Confidence 999887764331 0000 02345667888887776544322 233455678
Q ss_pred HHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHhhCccc
Q 009045 250 LILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA-LINYAALLLCKYGSVL 328 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~ 328 (546)
.-|...|+|+.|.+.|.++- ....-...|-+.|+|.+|.+.-+++.. |..... +...+.-+...
T Consensus 773 dhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh----- 837 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH----- 837 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh-----
Confidence 88888888888888887642 222334566778888888777666532 322221 22222211111
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHH------Hh----cCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAA------LK----ADPK-AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~----~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+...-.+|.-.|..++|+..|.+. +. ..|+ -.+.+..+|.-|...|+...|...|-++-.....
T Consensus 838 ---gkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaa 914 (1636)
T KOG3616|consen 838 ---GKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAA 914 (1636)
T ss_pred ---cchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence 11111112233445555566655542 11 1233 3457788899999999999999888766432110
Q ss_pred ChhHHHHHHHHHHHHhhh--------ccCchhHHHHHH----HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHH
Q 009045 398 CMSTRYAVAVSRIKDAER--------SQEPTEQLSWAG----NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 465 (546)
Q Consensus 398 ~~~~~~~l~~~~l~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 465 (546)
.....+...+.++.+ ..+....+.|+. ....+.+.... .+..-.......+-++-|+
T Consensus 915 ---vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g--------ll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 915 ---VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG--------LLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred ---HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh--------hHHHHhhhhhcccchhhHH
Confidence 000001111111110 001111122211 11111111100 0111112223445566666
Q ss_pred HHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 466 ETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 466 ~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
..-+-..+......+..++..+...|++++|-+.|-.+++++.-+
T Consensus 984 dlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 984 DLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 666666677777888889999999999999999999999988655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.4e-05 Score=68.62 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
+|..+.....+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|..+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~- 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI- 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Confidence 566777777888889999999999997767778899999999777 556666999999999999999999888887776
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|+.+.|...|++++..-+... .+|......-...|+.+......+++.+..|+..
T Consensus 82 --------------------~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 --------------------KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp --------------------HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred --------------------HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 78899999999999998866644 6888888888899999999999999999888754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.5e-06 Score=51.65 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
+.++..+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999988875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0042 Score=56.94 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=180.1
Q ss_pred CchHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 132 SSSREEKGLVHVARKMPKN--AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
+...+.+.-.+.-++-..+ +-++..-+..-.-.|+++.|.+-|+..+. .|+...+. ..|+.+
T Consensus 99 da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----------dPEtRllG----LRgLyl-- 162 (531)
T COG3898 99 DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----------DPETRLLG----LRGLYL-- 162 (531)
T ss_pred chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----------ChHHHHHh----HHHHHH--
Confidence 3355555555554433333 44555667888889999999999999886 33332211 111100
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc---CCCCh-----HHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV---DPNNC-----DCIGN 281 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~ 281 (546)
.....|..+.|+.+-+.+-..-|.-+.++...-...+..|+|+.|++..+..... .++-. ..+..
T Consensus 163 -------eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 163 -------EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred -------HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 0235677799999999999999999988888888889999999999999876543 22211 11222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 282 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
.+... -..+...|...-..+.++.|+...+-..-+..+. +.|+..++-..++.+.+..
T Consensus 236 kA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf---------------------~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 236 KAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALF---------------------RDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH---------------------hccchhhhhhHHHHHHhcC
Confidence 22222 2346888999999999999999888877777777 8899999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAA---KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 362 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
|. +. ++.+|....--+.++.-++++- .+.|++.......
T Consensus 294 PH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~v--------------------------------- 335 (531)
T COG3898 294 PH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAV--------------------------------- 335 (531)
T ss_pred CC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHH---------------------------------
Confidence 86 33 3445555444455555555543 4456665444433
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh-hHHhhHHHHHHHh-ccHHHHHHHHHHHHHh
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-CAGAGESAFLDQA-SAVNVAKECLLAALKA 506 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 506 (546)
+..-...|++..|...-+......+. .++..++.+-... |+-.+...++-++++-
T Consensus 336 -------------a~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 336 -------------AEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -------------HHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33334445555444444443333222 3334455554433 7778888888888763
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.9e-06 Score=68.98 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
|..++.-.+|..|+.+|.+++.++|..+..+.+.+.+++ +.++++.+....+++++++|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl---------------------k~~~~~~v~~dcrralql~~ 75 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL---------------------KLKHWEPVEEDCRRALQLDP 75 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH---------------------HhhhhhhhhhhHHHHHhcCh
Confidence 333444444555555555555555555554544444444 45555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+.+..++.+|.+......|++|+..+.++.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 555555555555555555555555555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-06 Score=48.97 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVS 172 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 172 (546)
+|+++|+.+|+++.+|+.+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00018 Score=61.25 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc--chhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC--EADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..++...|+-+++.|+|.+|...|+.|+....+- ...+..|.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW----------------------------------- 222 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW----------------------------------- 222 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-----------------------------------
Confidence 5677788888899999999999988887652110 000111122
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
++++......+.+.+.|+...|+|-++++....++..+|.+..+++..|.+....-+..+|...|.++++++|.
T Consensus 223 ------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 223 ------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred ------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 22223334577888888999999999999999999999999999999999988888889999999999998887
Q ss_pred CHHHH
Q 009045 309 HPAAL 313 (546)
Q Consensus 309 ~~~~~ 313 (546)
-..+.
T Consensus 297 lasvV 301 (329)
T KOG0545|consen 297 LASVV 301 (329)
T ss_pred hHHHH
Confidence 65544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0026 Score=54.04 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-----C-CChHHHHHHHHHHHHcCCHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-----P-NNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A 295 (546)
+++++|.++|.++- ..|....+|+.|=..|.++-... . +-...|...+.+|. .++..+|
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 46799988888764 33444455555555555553331 1 12344555555554 4599999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh-hcCHHHHHHHHHHHHhcCCC------CHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ-ASAVNVAKECLLAALKADPK------AAHIW 368 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~ 368 (546)
+.++++++++..+-. +.-. .+..+..+|.+|.. +.++++|+.+|+++-+-... .-..+
T Consensus 93 v~cL~~aieIyt~~G-------rf~~--------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMG-------RFTM--------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred HHHHHHHHHHHHhhh-------HHHH--------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 999999988754322 2211 02223345555555 48999999999998776443 22355
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 369 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
...+..-...++|.+|+..|+++....-++....
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 6667777789999999999999988766665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00094 Score=57.04 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+..-+.+|....+|++|..++.+|.+-.-. +..+...+..+-..+.+. .+...+.++..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfhAAKayEqaamLa-----------ke~~klsEvvdl 93 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFHAAKAYEQAAMLA-----------KELSKLSEVVDL 93 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHHHHH-----------HHHHHhHHHHHH
Confidence 455666677888889999999999999875322 233334444444444333 244556888888
Q ss_pred HHHHHhcC-----cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 231 LKESMQSD-----TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 231 ~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
|+++.... |+.+..-...+--....-+.++|++.|++++.+-... .+.+...++++.+..++.+|-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 88887653 3333333344444566788999999999988763322 456667788888999999988877
Q ss_pred HHHHhh----C--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCCCHHHHH
Q 009045 300 QDLILK----D--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAHIWA 369 (546)
Q Consensus 300 ~~al~~----~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 369 (546)
.+-... + +.....+.....+++ ...+|..|..+++...++ .+++..+..
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L---------------------~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYL---------------------YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHh---------------------hHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 764422 2 222222332223333 567889999999887665 334556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 009045 370 NLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~~a 391 (546)
+|-..| ..|+.++....+..-
T Consensus 233 nLL~ay-d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHcCh
Confidence 665554 567777766655433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=67.79 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=116.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-----------------------C--
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-----------------------N-- 274 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------------~-- 274 (546)
+..+...-++.-.+|++++|+.+.+|..|+.- ......+|..+|+++++... .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 56677899999999999999999999988763 23345777777777766311 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
...+...+|.+..++|+.++|++.++..++..|. +.....++..+++ ..+.|.++..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL---------------------elq~Yad~q~ 316 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL---------------------ELQAYADVQA 316 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH---------------------hcCCHHHHHH
Confidence 1335667899999999999999999999988775 4456777777776 8888999988
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCChhHH
Q 009045 353 CLLAALKA-DPKAAHIWANLANAYYL-TGD---------------HRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 353 ~~~~al~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.+.+--++ -|+.+...+..+.+-.+ .++ -..|++.+.++++.+|..+...
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 88886443 25556666655554332 121 1347788999999999876543
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00032 Score=66.40 Aligned_cols=216 Identities=15% Similarity=0.058 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+-.++..++++++|+.+.+|..|+.-.. .-..+|..+|+++++..... +....
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----------------lg~s~-------- 238 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----------------LGKSQ-------- 238 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----------------hchhh--------
Confidence 33445778899999999999988876432 34688999999998863111 11000
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHc
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTR--QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS 289 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 289 (546)
..+....+-..+..... ...+...+|.|..++|+.++|++.|+..++..|. +..++.+|..++..+
T Consensus 239 ----------~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel 308 (539)
T PF04184_consen 239 ----------FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL 308 (539)
T ss_pred ----------hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence 00000001111111111 1345677999999999999999999999988774 567999999999999
Q ss_pred CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc---CHHHHHHHHHHHHhcCCCCH
Q 009045 290 GDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 290 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~ 365 (546)
+.|.++...+.+--++ -|+.....+..+.+..+.-.+.. ....-.+.| .-..|++.+.+|++.+|..+
T Consensus 309 q~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~f--------s~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 309 QAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKF--------SPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred CCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcccc--------CchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9999999998885433 24444444444433322100000 000111222 12348899999999999877
Q ss_pred HHHHHHHH------HHHHcCChHHHHHHHHHHHhc
Q 009045 366 HIWANLAN------AYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 366 ~~~~~l~~------~~~~~g~~~~A~~~~~~al~~ 394 (546)
..+..+=. -+.+.|+ .||+.+---.+..
T Consensus 381 ~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 381 KYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQH 414 (539)
T ss_pred hhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHH
Confidence 65543321 2344554 6777666555543
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0032 Score=53.87 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=78.1
Q ss_pred hhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc
Q 009045 343 QASAVNVAKECLLAALKA-----DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~ 417 (546)
....+.++..+|+++..+ .|+.+..-...+--.....+.++|+..|++++.+...........
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~------------ 150 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF------------ 150 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH------------
Confidence 455566666666666544 233232233333334455677778888877776654433222111
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhhHHHHHHH
Q 009045 418 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQ 489 (546)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~ 489 (546)
..+-..+.++....++.+|-..+.+... +..-..+.....+++.
T Consensus 151 ----------------------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 151 ----------------------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred ----------------------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2233444555555555555555544221 1111223333345566
Q ss_pred hccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 490 ASAVNVAKECLLAALKA----DPKAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 490 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
..+|..|..+++..-++ .|++..+..+|-..| ..|+.++....+
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 66888888888876654 344455555555544 456666655443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.7e-05 Score=62.79 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.|+...|+|-++++.....+..+|.+..+++..|.++...=+..+|...|.++++++|.-.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 3444899999999999999999999999999999999999999999999999999999754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.034 Score=57.55 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
++++.|.++.++. +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-++++.-
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3446666655553 34678888888888888888888888764 5666777777888888888888888776
Q ss_pred HHhhCCC-CHHH--HHHHHHH------------------------HHHhhCcc-----ccccccccccchHHHhhcCHHH
Q 009045 302 LILKDQN-HPAA--LINYAAL------------------------LLCKYGSV-----LAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 302 al~~~p~-~~~~--~~~l~~~------------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+-+.-.. ..+. .+.++.+ ++...... ......+..++..+..+|+|+.
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 6543211 1111 1111111 00000000 0013334457777888899999
Q ss_pred HHHHHHHHHhcCC-----------C--------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHH
Q 009045 350 AKECLLAALKADP-----------K--------------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 350 A~~~~~~al~~~p-----------~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
|++..+++-.... . .++-+-.+...|...|-+++-+..++.++.+...+...+..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 9888887643210 0 23344566777888999999999999999887766666555
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q 009045 405 VAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469 (546)
Q Consensus 405 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 469 (546)
++..+-.-.-.....--.+-|..-.+.+.++.. +....|..+..+|..-..|+.|.....
T Consensus 1319 LaiLYskykp~km~EHl~LFwsRvNipKviRA~-----eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1319 LAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAA-----EQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 555332211000000011112222222333322 224678888888888888887765543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00037 Score=64.05 Aligned_cols=127 Identities=10% Similarity=0.062 Sum_probs=100.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 34557999999999997777778999999999777 56666699999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 299 FQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 299 ~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
|++++..-+... ..|..+...-. ..|+.+...+..+++.+..|.....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~---------------------~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFES---------------------KYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHH---------------------HHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999998866655 23443333333 7899999999999999998884443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0009 Score=64.31 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
..-..++.+|.++..+..-+.....+|+..+|+.++..++-..+.- ..+ .+...+|.++.+.|..
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-----~kd-----i~lLSlaTiL~RaG~s----- 265 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH-----NKD-----IALLSLATVLHRAGFS----- 265 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc-----ccc-----chhhhHHHHHHHcccc-----
Confidence 4455667777777666555555556899999999999999885432 111 2234556666666655
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
.+|--++..|+...|....-++.+|.++...+.+...+.+|..+.+.+|...
T Consensus 266 ------adA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 266 ------ADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ------cchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 7777777888877776667789999999999999999999999999988653
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=72.78 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 325 (546)
-..+...+.-+.|+.|+..|.++|+++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+++..|....
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m---- 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM---- 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH----
Confidence 3456677888999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..+.+.+|+..|+....+.|+++.+...+-.|-.
T Consensus 84 -----------------~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 84 -----------------ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred -----------------hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 8899999999999999999999998877776644
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.9e-05 Score=45.24 Aligned_cols=34 Identities=32% Similarity=0.559 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.011 Score=51.40 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME-QSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a 302 (546)
..|+..-..++.++|.+..+|..+-.++..+ .+..+-++++..++.-+|++..+|...-.+....|++. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 5556666666666666666665555554443 24455566666666666666666666666666666665 556666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC--
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG-- 379 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g-- 379 (546)
+..+..+..+|...-.++. ..+.++.-+.+..+.++.+-.+-.+|...--+... .|
T Consensus 140 l~~DaKNYHaWshRqW~~r---------------------~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLR---------------------FFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HhccccchhhhHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 6666666666665555554 44556666666666666555544444432211111 11
Q ss_pred ---ChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 380 ---DHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 380 ---~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
..+.-+.+..+.+...|++..+|..+
T Consensus 199 ~~~~le~El~yt~~~I~~vP~NeSaWnYL 227 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVPNNESAWNYL 227 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 12233445555666666666666544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0059 Score=58.82 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=48.5
Q ss_pred hHHhhHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh-----------------HHHHHHH
Q 009045 478 CAGAGESAFLDQA------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH-----------------RSSGKCL 534 (546)
Q Consensus 478 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~ 534 (546)
.++..+|...... +..++++..|+++++.+|+...+|+.+|..+...=+. ..|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4455666666666 7889999999999999999999999999987544221 2367777
Q ss_pred HHHHHHhc
Q 009045 535 EKVLMVYC 542 (546)
Q Consensus 535 ~~al~~~~ 542 (546)
-+++.+.+
T Consensus 333 ~~al~~~~ 340 (352)
T PF02259_consen 333 LKALSLGS 340 (352)
T ss_pred HHHHhhCC
Confidence 77776554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.028 Score=52.92 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
-.+...|.++.+++++.+|...|.+..+..... |.... -.++.++..- .+-.++.+.-...+
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~------~f~lk-eEvl~griln-----------Affl~nld~Me~~l 68 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESS------PFLLK-EEVLGGRILN-----------AFFLNNLDLMEKQL 68 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc------hHHHH-HHHHhhHHHH-----------HHHHhhHHHHHHHH
Confidence 345677899999999999999999998753221 11111 0111111000 11234445555555
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHH
Q 009045 232 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 232 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~ 296 (546)
...-+..|..+....-.|...++.+.|.+|++.+..--..-... ...-...+.++...|++.++.
T Consensus 69 ~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 69 MELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 55555677777777788888888899999888776544331110 111224567778889999988
Q ss_pred HHHHHHHh
Q 009045 297 KCFQDLIL 304 (546)
Q Consensus 297 ~~~~~al~ 304 (546)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 88887764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.5e-05 Score=44.91 Aligned_cols=31 Identities=39% Similarity=0.572 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0032 Score=59.01 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=114.8
Q ss_pred ccChhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---cCChHHHHHHHHh-hHhcCCCChHHHHHHHHHHHHc
Q 009045 218 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLK---SGRLQSSISVLSS-LLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~~~la~~~~~~ 289 (546)
|....+|+.-++..+..-.. -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|...
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 35667788888888877665 45567788889999999 9999999999999 5555678899999999998642
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH---HHHH
Q 009045 290 ---------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC---LLAA 357 (546)
Q Consensus 290 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~---~~~a 357 (546)
...++|+.+|.+++.++|+. ..-++++.++...+... ..-.+..+. +...
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~-----------------~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDF-----------------ETSEELRKIGVKLSSL 292 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcc-----------------cchHHHHHHHHHHHHH
Confidence 34789999999999999654 34456666655322110 000011111 1111
Q ss_pred H-h----cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 358 L-K----ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 358 l-~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
+ + -.-.+...+-.++.+..-.|++++|+..+++++++.|....
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1 1 11123445566788888899999999999999999876654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.6e-05 Score=44.05 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
+++.+|.+++.+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0037 Score=61.92 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhh------Hhc----CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSL------LAV----DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
..|-.-|.+|.+..++++|+++|++. +++ .|.. ...--..|.-+...|+++.|+..|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 45555666677777777777766543 322 2222 112233455666677777777766544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.6e-05 Score=44.06 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=58.36 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=106.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhhCc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~ 326 (546)
-+.+.+..|++.+|-...++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++-+-..+.-|..-
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya------ 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA------ 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHH------
Confidence 3456677899999999999999999999999998899999999999999999999977 666544333333222
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
-.+...|-|++|.+..++++++++.+.-+...++.++...|++.++.+.+.+.
T Consensus 183 ------------FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 183 ------------FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ------------hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 23448899999999999999999999999999999999999999999988764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=57.66 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+.
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555554443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.05 Score=51.66 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCChhHHHHHHHHHHHHhcccchhccchhhH-HHHHHHhhccccc
Q 009045 133 SSREEKGLVHVARKMPKN---AHAHFLLGLMY-QRLGQPLKAVSSYEKAEEILLRCEADIARPELL-SLVQIHHAQCLLP 207 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~---~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (546)
.+.++++++..+...|.+ +..+..+|.++ ....+++.|...++++..+... -|.+. .-......++.++
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~------ip~fydvKf~a~SlLa~lh 98 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS------IPSFYDVKFQAASLLAHLH 98 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc------cccHHhhhhHHHHHHHHHH
Confidence 378888888888887764 56677788765 4578999999999999877421 22221 0111222233332
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCChHHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV----VWNTLGLILLKSGRLQSSISVLS 266 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 266 (546)
.... ..+..+...+++++++....+. ..+.++.++.-..++..|++.+.
T Consensus 99 ~~~~----------~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 99 HQLA----------QSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHhc----------CCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 2221 1468899999999988765543 55668888888888888887643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.09 Score=54.54 Aligned_cols=294 Identities=14% Similarity=0.022 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCc----ccHHHHHHHHHHHH-HcCChHHHHHHHHhhHhcCCC--C----hHHHHHHHHHHHHcCCHH
Q 009045 225 EEILSKLKESMQSDT----RQAVVWNTLGLILL-KSGRLQSSISVLSSLLAVDPN--N----CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 225 ~~A~~~~~~al~~~p----~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~ 293 (546)
..|+.+++-+++..+ ..+.+++.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 667788877774222 23558888999887 789999999999999887643 2 234556788888888877
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CCCHHH---
Q 009045 294 QSAKCFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHI--- 367 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~--- 367 (546)
|....++.++..... ...|...-..+. .......+++..|++.++...... ..++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~----------------~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLK----------------IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHH----------------HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 999999998765441 112222222221 011113379999999999988775 243332
Q ss_pred -HHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCh----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 368 -WANLANAYYLTGDHRSSGKCLEKAAKL------EPNCM----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 368 -~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
....+.++...+..+++++..+++... +++.. .++..+.. +.-..... .........+.+...+..
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~--l~~~l~~~-~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD--LCCSLQQG-DVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH--HHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 334466777788888888888877432 22221 11111111 11111111 111111111122221111
Q ss_pred CCCCC-------------------------C------C----cHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh----
Q 009045 437 GDPVQ-------------------------I------E----PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE---- 477 (546)
Q Consensus 437 ~~~~~-------------------------~------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---- 477 (546)
..... + . ...+|..-|......+..++|.+.+.+.+.....
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 11100 0 0 0112233344444555554555555543220000
Q ss_pred ------------------------hHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHhc
Q 009045 478 ------------------------CAGAGESAFLDQASAVNVAKECLLAALKAD---PK------AAHIWANLANAYYLT 524 (546)
Q Consensus 478 ------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~lg~~~~~~ 524 (546)
...+..+.+.+-.+++..|...++.+.... |. .+..++..|..+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 124466677778899999999888777642 22 377889999999999
Q ss_pred CChHHHHHHHHHHH
Q 009045 525 GDHRSSGKCLEKVL 538 (546)
Q Consensus 525 g~~~~A~~~~~~al 538 (546)
|+.+.|..+|.+..
T Consensus 418 g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 418 GDLEAALYQYQKPR 431 (608)
T ss_pred CCHHHHHHHHhhhH
Confidence 99999999998444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=51.78 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH-HHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL-EEILSKLKE 233 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~A~~~~~~ 233 (546)
...|......|+...++..+++++.+...+-..... ...| ......++.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~------------------------------~~~W~~~~r~~l~~ 59 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLD------------------------------DEEWVEPERERLRE 59 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT------------------------------TSTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC------------------------------ccHHHHHHHHHHHH
Confidence 344666677889999999999999875322100000 0011 222233333
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
. ...+...++..+...|++++|+..+++++..+|.+-.++..+..+|...|+..+|++.|++...
T Consensus 60 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 L------YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp H------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 2467778899999999999999999999999999999999999999999999999999998764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.052 Score=51.10 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK----DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
.+++..++=..|....+|+.-++..+..-.+ -++.......++.++.++ .+.|+.++|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr------------------n~~gdre~A 201 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR------------------NKPGDREKA 201 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc------------------ccCCCHHHH
Confidence 3566778888899999999999998887665 344555566666666521 138999999
Q ss_pred HHHHHHH-HhcCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCChh
Q 009045 351 KECLLAA-LKADPKAAHIWANLANAYYLT---------GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 351 ~~~~~~a-l~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 400 (546)
+..+..+ ....+.+++.+..+|.+|..+ ...++|+..|.++.+++|+...
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 9999994 455667899999999998642 3478999999999999976543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=64.03 Aligned_cols=134 Identities=19% Similarity=0.162 Sum_probs=96.9
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccH
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA 242 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (546)
-.|+-+.++..+.++.+. .+- +..+..++-..+.... ....+.. . ...+.+.|.+.+....+..|+..
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i-----~~~la~L~LL~y~~~~-~~~~~~~----~-~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENI-----RSPLAALVLLWYHLVV-PSFLGID----G-EDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCc-----chHHHHHHHHHHHHHH-HHHcCCc----c-cCCCHHHHHHHHHHHHHhCCCcH
Confidence 358899999999998763 111 2222222222111111 0111110 0 34567999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
-.++..|+++...|+.++|++.|++++...... .-.++.+|.++..+++|++|..+|.+..+.+.-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988643332 346889999999999999999999999986544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0076 Score=49.99 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCcccH---HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQA---VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
+.....++....++... -+...++..+...|++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444445555554432 245567888999999999999999988654332 345678899999999999998887
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
...-. ..|..+..-+ .|+++...|+-++|+..|++++...+.
T Consensus 150 ~t~~~------~~w~~~~~el----------------rGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKE------ESWAAIVAEL----------------RGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccc------ccHHHHHHHH----------------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 65422 1122221111 145555888888888888888887644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.4e-05 Score=69.88 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=85.4
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|.++.|++.|..++.++|..+..+..++.++..+++...|+..+..+++++|+....+-..|.....+|+|.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 009045 299 FQDLILKDQN 308 (546)
Q Consensus 299 ~~~al~~~p~ 308 (546)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 9999987643
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.028 Score=48.87 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH-HHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ-SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
++.+-++++.++++.+|.+..+|..+-.+....|+.. .-++..+.++..+.++..+|...-.+....+.++.-+.+..+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4688899999999999999999999999999999888 889999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC-
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL-TG- 379 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g- 379 (546)
.++.+-.+-.+|...-.+.... .|.. ..-..+.-+.+..+.|.+.|++..+|..|..++.. .|
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~-------------~~~~--~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNT-------------KGVI--SKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHHhhhccchhheeeEEEEec-------------cCCc--cHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 9998877777765432221100 0000 11234566788889999999999999999988886 44
Q ss_pred -ChHHHHHHHHHHH
Q 009045 380 -DHRSSGKCLEKAA 392 (546)
Q Consensus 380 -~~~~A~~~~~~al 392 (546)
.+.+-.......+
T Consensus 238 ~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 238 SSDSKVVSFVENLY 251 (318)
T ss_pred cCCchHHHHHHHHh
Confidence 2344444444444
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=64.15 Aligned_cols=93 Identities=11% Similarity=0.175 Sum_probs=84.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+++..+|..|+..|.+.|+..-.+ +..|.+++-+....|+|..|+....+++.++|.+..+++.-+.+++.+.++.
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 688899999999999999875443 5588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCH
Q 009045 294 QSAKCFQDLILKDQNHP 310 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~ 310 (546)
+|..+.+..+.++....
T Consensus 171 ~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 171 EAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHhhhhhhhHHHH
Confidence 99999999987765443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.006 Score=54.22 Aligned_cols=145 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
..+...|..++...|++.++...++.+|...|+.+.|...+...-..... ..... ...+..+. ...+.
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-------~~~~~-l~a~i~ll---~qaa~- 218 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-------KAAHG-LQAQIELL---EQAAA- 218 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-------hHHHH-HHHHHHHH---HHHhc-
Confidence 78888999999999999999999999999999999999888774322111 11110 01110110 00000
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHHcCC
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~ 291 (546)
.++ ...+++.+..+|++..+-+.+|..+...|+.+.|++.+-..++.+. .+..+...+-.++...|.
T Consensus 219 -------~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 -------TPE----IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred -------CCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 011 1345556678999999999999999999999999999998888755 345566666666666664
Q ss_pred HHHHHHHHHH
Q 009045 292 MEQSAKCFQD 301 (546)
Q Consensus 292 ~~~A~~~~~~ 301 (546)
-+.+...|++
T Consensus 288 ~Dp~~~~~RR 297 (304)
T COG3118 288 ADPLVLAYRR 297 (304)
T ss_pred CCHHHHHHHH
Confidence 4444444433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0014 Score=58.68 Aligned_cols=101 Identities=18% Similarity=0.112 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+.-+-.-|+-|++..+|..|+..|.+.|+..-. +...|.+.+.+.+.+|+|..|+....++++++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445667899999999999999999999997443 3567889999999999999999999999999999999999888
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+++ .++++.+|+.+++..+.++.+
T Consensus 161 kc~~---------------------eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLL---------------------ELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHH---------------------HHHHHHHHHHHHhhhhhhhHH
Confidence 8887 888999999999988776544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.006 Score=60.46 Aligned_cols=188 Identities=15% Similarity=0.004 Sum_probs=123.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEM 430 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (546)
+-.|.-++.+-|.. ...+-.+.--.|+-+.++..+.++.+ .++-....-.+.+..+-......-..+........+
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 34455556655532 22333344456899999999999877 333222222222221111110000000012223334
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc------chhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 431 ASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS------KMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+.......|+.....+..|.++...|+.++|+..+.+.+. +...-.++.++.++..+.+|++|..++.+.+
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 4555555556678888889999999999999999999997664 2333557899999999999999999999999
Q ss_pred HhCCCC-HHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHhc
Q 009045 505 KADPKA-AHIWANLANAYYLTGDH-------RSSGKCLEKVLMVYC 542 (546)
Q Consensus 505 ~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~~ 542 (546)
+.+.-. +...|..|.|+...|+. ++|.++|.++-.+..
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 876554 45567789999999999 888888887766553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00019 Score=64.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=81.3
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+..|.+++|++.|..++.++|.....+...+.++.++++...|+..+..++.++|+....+-..+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---------- 193 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---------- 193 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH----------
Confidence 3456889999999999999999999999999999999999999999999999999998877766666655
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+|+|++|...+..+.+++-+
T Consensus 194 -----------llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 -----------LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred -----------HhhchHHHHHHHHHHHhcccc
Confidence 789999999999999988654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.034 Score=51.89 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCC-hHHHHHHHHHHHHcC-----
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSG----- 290 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g----- 290 (546)
..+..+|...|+.+. ...++.+.+.+|.+|.. ..+..+|..+|.++....-.. ..+.+.+|..|..-.
T Consensus 90 ~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 456799999999554 45678899999999987 459999999999999875433 344888888887642
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 291 --DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 291 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
+...|+..|.++.... +..+...+|.+|..- ..-..++.+|+.+|.++-+... ...+
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----------------~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----------------LGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----------------CCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 2337899999888765 778888888877631 1145689999999999999876 8888
Q ss_pred HHHHHHHHHcC---------------ChHHHHHHHHHHHhcCCCC
Q 009045 369 ANLANAYYLTG---------------DHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 369 ~~l~~~~~~~g---------------~~~~A~~~~~~al~~~p~~ 398 (546)
+.++ ++...| +...|...+..+....+..
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 8888 777666 6666667666666555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00041 Score=40.29 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
|
... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.054 Score=50.52 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=56.5
Q ss_pred HHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------
Q 009045 462 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG------------ 525 (546)
Q Consensus 462 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------ 525 (546)
..|+..|.++.......+.+.+|.+|.. ..++.+|..+|.++-+... ..+++.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 172 KKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 4566666665555677777778877754 3368999999999988776 88888888 666666
Q ss_pred ---ChHHHHHHHHHHHHHh
Q 009045 526 ---DHRSSGKCLEKVLMVY 541 (546)
Q Consensus 526 ---~~~~A~~~~~~al~~~ 541 (546)
+...|..++.++....
T Consensus 249 ~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 249 KEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 7778888887776543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.022 Score=53.62 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=115.8
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCC------------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGR------------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
..|++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876554432 456788999999999999999999988999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-------C----C---
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-------D----P--- 362 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~----p--- 362 (546)
+.+++++..+|++...|..+-...... ...-.+......|.+++.. . +
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~------------------~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~ 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN------------------FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLP 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH------------------hccCcHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 999999999999999988776665421 0122355555666555543 1 0
Q ss_pred ----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 363 ----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 363 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
....+...+.......|..+.|+..++..++++=
T Consensus 148 ~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 148 ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1234566777888899999999999999998753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0089 Score=49.04 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=68.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.|......++...++..+.+++.+.... ..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555556677777777777777763211 235567788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
+|.+...+..+..++. ..|+...|+..|++...
T Consensus 92 dP~~E~~~~~lm~~~~---------------------~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALA---------------------AQGRRAEALRVYERYRR 124 (146)
T ss_dssp STT-HHHHHHHHHHHH---------------------HTT-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HCcCHHHHHHHHHHHHH
Confidence 9999999999998888 89999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00037 Score=40.48 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999999999999999998884
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=40.54 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+|.+||.+|...|++++|+.+|++++.+-.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888776553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00037 Score=40.13 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
+++.+|.++...|++++|+..|+++++.+|.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45666666666666666666666666666543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=47.15 Aligned_cols=240 Identities=16% Similarity=0.078 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHh----CCCC----HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcc-cchhccchhhH-HHHHHHhh
Q 009045 134 SREEKGLVHVARK----MPKN----AHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLR-CEADIARPELL-SLVQIHHA 202 (546)
Q Consensus 134 ~~a~~~~~~~l~~----~p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~~~~ 202 (546)
..|+..+.++-.. +|+. ...+++.|......+ ++++|+.+++++.++... .......++.. -...++..
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~ 89 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRL 89 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHH
Confidence 4555555554432 3332 566788888889999 999999999999998533 11112223321 12345556
Q ss_pred ccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHH
Q 009045 203 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGN 281 (546)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 281 (546)
++.++...+.. ...++|....+.+-...|+.+..+...-.++.+.++.+.+.+.+.+++..-+ .....-..
T Consensus 90 La~~~l~~~~~--------~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 90 LANAYLEWDTY--------ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHcCCCh--------HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 66665444443 5667788888888888888888886666666678999999999999988644 11211111
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 282 LGIA-YFQSGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 282 la~~-~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+ .........|...+...+.. .|.... +.....+....... ...-....+..+.....+....
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~----------~~~~~~~~~~i~~l~~~~~~v~ 230 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTT----------QSKDLSSSEKIESLEELLSIVE 230 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHc----------CCccccchhHHHHHHHHHHHHH
Confidence 2211 11223446777777777744 333221 33333222210000 0000001111233333333222
Q ss_pred hc--CCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 359 KA--DPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 359 ~~--~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+. .|-.. ....+.|...+..++|++|+..|+-++
T Consensus 231 ~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 231 HSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11 12122 234566888999999999999999776
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.17 Score=47.78 Aligned_cols=378 Identities=9% Similarity=-0.021 Sum_probs=194.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
-++.-++.+|++...|+.|...+..+|.+++-.+.|++...-.|-- ..++..+..+ .
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~----------~~aw~ly~s~-------------E 86 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM----------EHAWRLYMSG-------------E 86 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc----------cHHHHHHhcc-------------h
Confidence 3455678899999999999999999999999999999987654322 1112222222 1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C---------ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS-G---------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
+..++|......|.+++...-+ .+.|...- -|.+. + ..-+|.+..-..+-.+|.....|...+..+..
T Consensus 87 LA~~df~svE~lf~rCL~k~l~-ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 87 LARKDFRSVESLFGRCLKKSLN-LDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhhcc-HhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 3557778888888887764332 33443322 22221 1 12233333333444577777777776655432
Q ss_pred ---------cCCHHHHHHHHHHHHhhCCCCHHH-HHHH-------------------------HHHHHHhhCcccc----
Q 009045 289 ---------SGDMEQSAKCFQDLILKDQNHPAA-LINY-------------------------AALLLCKYGSVLA---- 329 (546)
Q Consensus 289 ---------~g~~~~A~~~~~~al~~~p~~~~~-~~~l-------------------------~~~~~~~~~~~~~---- 329 (546)
+.+.+.-...|.+++..--++.+- |... +...++.......
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 333445566677776532222111 1100 0000000000000
Q ss_pred ---------------ccccccccchH------HHhhcCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 330 ---------------GAGANTGEGAC------LDQASAVNV-AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 330 ---------------~~~~~~~~~~~------~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
....|++.-.. ....+-..+ ---.+++++.-.+-.++.|+.-...+...++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 00011110000 001111222 22346677777777888888888888888999999998
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH----HHHHHHHHHHHHhcCCCCCC------------CcHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ----LSWAGNEMASILREGDPVQI------------EPPIAWAGF 451 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l 451 (546)
.++++...|.-.. .+..-...-.+........+. +.................++ ....+|..+
T Consensus 325 v~rg~~~spsL~~-~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~ 403 (660)
T COG5107 325 VERGIEMSPSLTM-FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH 403 (660)
T ss_pred HHhcccCCCchhe-eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence 8888888776211 000000000000000000000 00000000000011111011 111233333
Q ss_pred HHHHHhcccHHHHHHHHHhhccch--hhhHHhhHHH-HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKM--EECAGAGESA-FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
-....+..-.+.|...|.+.-+.. ....+..-|. -+...|++..|-..|+-.+...|+.+...+..-..+...++-.
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence 333344444566666666644422 1122222221 4557788999999999999999988877777777778889999
Q ss_pred HHHHHHHHHHHHhc
Q 009045 529 SSGKCLEKVLMVYC 542 (546)
Q Consensus 529 ~A~~~~~~al~~~~ 542 (546)
.|...|+++++...
T Consensus 484 naraLFetsv~r~~ 497 (660)
T COG5107 484 NARALFETSVERLE 497 (660)
T ss_pred HHHHHHHHhHHHHH
Confidence 99999998877653
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.32 Score=50.20 Aligned_cols=244 Identities=11% Similarity=-0.044 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
++......++......++.+|.....++...-+. ....-..++...- -.|.+....|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~a--------------L~a~val~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQA--------------LRAQVALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHH--------------HHHHHHHhcCCHHHHHH
Confidence 4556666777778888888888888777654333 1111111111110 01344447899999999
Q ss_pred HHHHHHhcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH----HHHHHHHhhhccCchhHH
Q 009045 353 CLLAALKADPK-----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV----AVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 353 ~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----~~~~l~~~~~~~~~~~~~ 423 (546)
..+.++..-|. ...++..+|.+..-.|++++|..+...+.++.......++.+ -...+..... .......
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG-q~~~a~~ 558 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG-QVARAEQ 558 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 99999998776 355778899999999999999999999988754433322221 1111111111 0001111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhh-HHhhHHHHHHHhccHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEEC-AGAGESAFLDQASAVN 494 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~-~~~~la~~~~~~g~~~ 494 (546)
..+........... .+.........+.++...-+++.+.......+. +.... ..+.++.+....|+++
T Consensus 559 ~~~~~~~~~q~l~q---~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 559 EKAFNLIREQHLEQ---KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHhhh---cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 111112223333333333334444433333221 11122 2348899999999999
Q ss_pred HHHHHHHHHHHhCCCC--HH-----HHHHHHHHHHhcCChHHHHHHHHH
Q 009045 495 VAKECLLAALKADPKA--AH-----IWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 495 ~A~~~~~~al~~~p~~--~~-----~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+|...+.....+-.+. .. ++.-........||..+|.....+
T Consensus 636 ~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 636 KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999887753322 11 111122233677898888887766
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.2 Score=48.20 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
.....|...+.+..+.|+++.|...+.++....+. .+...+..+.+++ ..|+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw---------------------~~g~~~~ 202 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW---------------------AQGEQEE 202 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH---------------------HcCCHHH
Confidence 44556666666777777777777666666654321 2334444444444 5566666
Q ss_pred HHHHHHHHHhc-C---------------------------------CCCHHHHHHHHHHHHHc------CChHHHHHHHH
Q 009045 350 AKECLLAALKA-D---------------------------------PKAAHIWANLANAYYLT------GDHRSSGKCLE 389 (546)
Q Consensus 350 A~~~~~~al~~-~---------------------------------p~~~~~~~~l~~~~~~~------g~~~~A~~~~~ 389 (546)
|+..++..+.. . .....++..+|...... +..++++..|+
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 66666555551 0 00245666777777777 88899999999
Q ss_pred HHHhcCCCChhHHHHHHHHHH
Q 009045 390 KAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 390 ~al~~~p~~~~~~~~l~~~~l 410 (546)
++++.+|....+++..+....
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHH
Confidence 999999999988888776443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.17 Score=46.62 Aligned_cols=154 Identities=13% Similarity=0.116 Sum_probs=101.6
Q ss_pred ccChhhHHHHHHHHHHHHhcC----ccc----HHHHHHHHHHHHHcC-ChHHHHHHHHhhHhc----CC---CC------
Q 009045 218 ELEPEELEEILSKLKESMQSD----TRQ----AVVWNTLGLILLKSG-RLQSSISVLSSLLAV----DP---NN------ 275 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~----~p---~~------ 275 (546)
..++|+++.|..++.|+-... |+. ...+++.|......+ +++.|...++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357888999999999986543 433 347788899999999 999999999999887 21 11
Q ss_pred -hHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 276 -CDCIGNLGIAYFQSGDME---QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 276 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++. +.++.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~---------------------~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL---------------------KSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh---------------------ccCChhHHH
Confidence 346778899998888765 4555555555666776766644444443 467788888
Q ss_pred HHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 352 ECLLAALKADPK---AAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 352 ~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.+.+++..-+- +.........-+.. .....|...+...+.
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHH
Confidence 888888876442 12221111212222 334566666666654
|
It is also involved in sporulation []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.052 Score=51.70 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 139 GLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
.+...++.+|-+.+++..++.++..+|+...|.++.++|+-..-.. ..+.+. ....-...|.. .
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~----~~~~F~--------~~~~~~~~g~~----r 91 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA----FHPSFS--------PFRSNLTSGNC----R 91 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH----HHHHhh--------hhhcccccCcc----c
Confidence 3445779999999999999999999999999999999998763110 001110 00000011111 0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-ChHHH-HHHHHHHHHcCCHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCI-GNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~~A~ 296 (546)
+.-..+ .+.....+++.....+.+.|-+..|+++.+-.+.++|. ++-.. +.+-....+.++++--+
T Consensus 92 L~~~~~------------eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 92 LDYRRP------------ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred cCCccc------------cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 000000 01122346667788889999999999999999999998 66544 44444456778888777
Q ss_pred HHHHHHHh
Q 009045 297 KCFQDLIL 304 (546)
Q Consensus 297 ~~~~~al~ 304 (546)
+.++....
T Consensus 160 ~~~~~~~~ 167 (360)
T PF04910_consen 160 DFSESPLA 167 (360)
T ss_pred HHHHhHhh
Confidence 77776554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.34 Score=55.48 Aligned_cols=257 Identities=10% Similarity=0.054 Sum_probs=150.7
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
..-..+...|+|..|..+|++++..+|+....+...-......|.+...+...+-.....++....+..++.--.
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaa----- 1528 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAA----- 1528 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHH-----
Confidence 344456677999999999999999999888888877778888888888888887777666666666666654332
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH-----HHHHHHHHHhcCC-----
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-----SGKCLEKAAKLEP----- 396 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~p----- 396 (546)
.+.++++.-..+.. ..+-.+..+.. +|.+.....+-+. .++..+..+ +.|
T Consensus 1529 ---------------W~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s 1588 (2382)
T KOG0890|consen 1529 ---------------WRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACS 1588 (2382)
T ss_pred ---------------hhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhh
Confidence 25666665554433 11111122211 5555555433221 111111111 111
Q ss_pred ---CChhHHHHHHHHHH-HHhhhccCchhHHHHHHHHHHHHHhcCCC--CCCCcHHHHHHHHHHHHhcccHHHHHHHHHh
Q 009045 397 ---NCMSTRYAVAVSRI-KDAERSQEPTEQLSWAGNEMASILREGDP--VQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 470 (546)
Q Consensus 397 ---~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 470 (546)
.....+-.+....+ .+. ......+..... ....+..-|.+....-....+..+-+-.+++
T Consensus 1589 ~~~Sy~~~Y~~~~kLH~l~el--------------~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RR 1654 (2382)
T KOG0890|consen 1589 IEGSYVRSYEILMKLHLLLEL--------------ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRR 1654 (2382)
T ss_pred ccchHHHHHHHHHHHHHHHHH--------------HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHH
Confidence 00011111110000 000 001111111100 0112223455554444444445555544444
Q ss_pred hc---------cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 471 EL---------SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 471 ~l---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+ +..-.+.|...|++....|.++.|..++-+|.+.. -+.++...|..+...|+...|+..+++.+++.
T Consensus 1655 s~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1655 SMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 22 23444779999999999999999999999998876 57889999999999999999999999999876
Q ss_pred ccc
Q 009045 542 CSS 544 (546)
Q Consensus 542 ~~~ 544 (546)
-.+
T Consensus 1733 ~~~ 1735 (2382)
T KOG0890|consen 1733 FPD 1735 (2382)
T ss_pred ccc
Confidence 443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.024 Score=53.90 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=110.5
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------------------------CCCC---hHHHHHHHH
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------------------------DPNN---CDCIGNLGI 284 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~---~~~~~~la~ 284 (546)
.+..+|-+.+++..++.++..+|++..|.+.+++|+-. .+.| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999999988532 1122 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC-
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP- 362 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 362 (546)
...+.|-+..|.++.+-.+.++|. ++-........|. .+.++++=-++.++.......
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A--------------------Lrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA--------------------LRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH--------------------HhcCCHHHHHHHHHhHhhhhhh
Confidence 788999999999999999999999 6655544444443 266777777777776554211
Q ss_pred ----CCHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHhcCCCC
Q 009045 363 ----KAAHIWANLANAYYLTGDH---------------RSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 363 ----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 398 (546)
.-+..-+.++.+++..++- ++|...+.+|+...|.-
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 1345667788888888888 89999999999998854
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.13 Score=48.35 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|++.++.+|.+..+|..+........... ....-....-.+.-+.+|++|++.+|++...+..+-.+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~---------~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQ---------SSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcccc---------ccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4577788888999999988887665321100 0001112333567889999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+..+.++....+++++..+|++...|........
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999888876544333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.12 Score=51.36 Aligned_cols=239 Identities=12% Similarity=0.054 Sum_probs=137.4
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCI----------GNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++.+| ++..|..++..-...-.++-|...|-+.-.. +. .... ...+.+-.--|+|++|.+.|-.+-+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 44455 4889999999888888888888888765321 11 1111 2234444456899999988855432
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 382 (546)
. .++.-+. .+.|+|-...+.++..-.-+.+ --.++.++|..+..+..|+
T Consensus 763 r---------DLAielr--------------------~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 763 R---------DLAIELR--------------------KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred h---------hhhHHHH--------------------HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222111 2667776666666543222221 3568899999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|.++|.++-.... ..+.++.+-. + ..+..... ..|++...+-.+|..+...|.-+
T Consensus 814 ~A~~yY~~~~~~e~-~~ecly~le~--f-----------------~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 814 EAAKYYSYCGDTEN-QIECLYRLEL--F-----------------GELEVLAR----TLPEDSELLPVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHhccchHh-HHHHHHHHHh--h-----------------hhHHHHHH----hcCcccchHHHHHHHHHhhchHH
Confidence 99999987654322 1222222111 0 00111111 12445566778888999999999
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+|...|.+.-.+.... .....+.+|.+|++.-++-- -|.-....-..+.-+...++..+|++.++++
T Consensus 870 qAV~a~Lr~s~pkaAv------~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 870 QAVEAYLRRSLPKAAV------HTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHhccCcHHHH------HHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 9998887644433221 14455666777766555321 1221222222333345667777777777766
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0012 Score=38.87 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEIL 181 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 181 (546)
+|..||.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999988764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.34 Score=47.08 Aligned_cols=396 Identities=14% Similarity=0.096 Sum_probs=201.9
Q ss_pred HHhHhcCCCCcccccccCCC----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchh
Q 009045 112 DSALEFGVDADGDQSGLGTS----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEAD 187 (546)
Q Consensus 112 ~~al~~~~~~~~~~~~~g~~----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 187 (546)
++-|+.+|.+..+|..+-.- ...+..+.|++.+...|..+.+|.......++..+|+.-...|.+.+..--+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn---- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN---- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh----
Confidence 55677788877777654322 3477788999999999999999999999999999999999999998865211
Q ss_pred ccchhhHHHHHHHhhc-------------------cccccccC------------------CCccccccChhhHHHHHHH
Q 009045 188 IARPELLSLVQIHHAQ-------------------CLLPESSG------------------DNSLDKELEPEELEEILSK 230 (546)
Q Consensus 188 ~~~~~~~~~~~~~~~~-------------------~~~~~~~g------------------~~~~~~~~~~~~~~~A~~~ 230 (546)
-++ ...+... -.+....| -....++-++.+.+.-.+.
T Consensus 86 ---lDL---W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRri 159 (656)
T KOG1914|consen 86 ---LDL---WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRI 159 (656)
T ss_pred ---HhH---HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 111 1111100 00011111 0011122233344444455
Q ss_pred HHHHHhcCcccHH-HHHH-----------HH--HHHHHcCChHHHHHHHHhhHhc-------CCC----C-------hHH
Q 009045 231 LKESMQSDTRQAV-VWNT-----------LG--LILLKSGRLQSSISVLSSLLAV-------DPN----N-------CDC 278 (546)
Q Consensus 231 ~~~al~~~p~~~~-~~~~-----------l~--~~~~~~g~~~~A~~~~~~al~~-------~p~----~-------~~~ 278 (546)
|++++..--.+.+ .|.. .| .+--+...|..|...++....+ +|. . .+.
T Consensus 160 Yqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 160 YQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHH
Confidence 5555533222211 1100 00 0111222344444444433221 110 0 111
Q ss_pred HHHHHHHHHHcC------C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC----
Q 009045 279 IGNLGIAYFQSG------D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA---- 346 (546)
Q Consensus 279 ~~~la~~~~~~g------~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 346 (546)
|.++...-...+ . -..-.-.|++++..-+-.++.|+..+..+.. .++++...|+
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~--------------~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIE--------------ISDLLTEKGDVPDA 305 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------hhHHHHHhcccccc
Confidence 222221111111 0 0112234455555555555555554444431 2333334443
Q ss_pred ---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCc
Q 009045 347 ---VNVAKECLLAALKADPK-AAHIWANLANAYYLTG---DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 419 (546)
Q Consensus 347 ---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~ 419 (546)
-+++..+|++++..--. +...++.++.--...- +++.-...+++.+.+...+....+..-...+.. .+-
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eG 381 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEG 381 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhh
Confidence 56778888887764322 3334444443332222 256666777777766544433222111111111 111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-HHHhcccHHHHHHHHHhhccchhhhHHh--hHHHHHHHhccHHHH
Q 009045 420 TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA-VQKTHHEVAAAFETEENELSKMEECAGA--GESAFLDQASAVNVA 496 (546)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~la~~~~~~g~~~~A 496 (546)
.. ..+..+............++..-|. -|...++.+-|+..|...+........+ .....+...++-..|
T Consensus 382 lk-------aaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 382 LK-------AARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HH-------HHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 11 1112222111111111233333332 2456789999999999988755544433 334467788999999
Q ss_pred HHHHHHHHHh--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 497 KECLLAALKA--DPK-AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 497 ~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
...|++++.. .|+ ...+|..+-..-..-|+...+++.=++-...++
T Consensus 455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999987 443 356777777777888888888877776666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.069 Score=44.54 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccc
Q 009045 260 SSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 260 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
+......+....++... -+-..++..+...|++++|+..++.++....+.. +..++...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~--lk~l~~lR---------------- 131 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN--LKALAALR---------------- 131 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH--HHHHHHHH----------------
Confidence 33444444444454432 2455678889999999999999999986433221 11121111
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++++..+.|.+++|+..+....... -.+..-...|.++...|+-++|+..|++++...++.
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2444559999999999887644311 123445678999999999999999999999998554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0019 Score=37.10 Aligned_cols=32 Identities=16% Similarity=0.026 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKA 510 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 510 (546)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57889999999999999999999999999974
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.003 Score=55.85 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
..|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 567779999999999999999999999999999999999999999999999999999998877654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=42.80 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (546)
..+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 34667888899999999999999999999999999999999999998765 56666666666666665544444444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.72 Score=47.82 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++......+.......++.+|.....++...-+..... ...+......+..+.. .+..|++++|++
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~-~~~~l~ae~~aL~a~v-------------al~~~~~e~a~~ 479 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHS-RQGDLLAEFQALRAQV-------------ALNRGDPEEAED 479 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCccc-chhhHHHHHHHHHHHH-------------HHhcCCHHHHHH
Confidence 56666777888889999999999999987765443111 1111211112222221 345678899999
Q ss_pred HHHHHHhcCccc-----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC----CC--hHHHHHHHHHHHHcCCHH--HHH
Q 009045 230 KLKESMQSDTRQ-----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP----NN--CDCIGNLGIAYFQSGDME--QSA 296 (546)
Q Consensus 230 ~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~--~~~~~~la~~~~~~g~~~--~A~ 296 (546)
..+.++..-|.+ ..++..+|.+.+-.|++++|..+.+.+.+... -. ..+....+.++..+|+.. +..
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999887754 45777899999999999999999999887732 22 234445577888889433 333
Q ss_pred HHHHHHH----hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc----CCCCHH--
Q 009045 297 KCFQDLI----LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA----DPKAAH-- 366 (546)
Q Consensus 297 ~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~-- 366 (546)
..|...- ...|.........+.++.. .-+++.+..-..+.++. .|....
T Consensus 560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~---------------------~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRA---------------------WLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHH---------------------HHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 3333222 2233333333333333331 11144444444444433 333222
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 367 -IWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 367 -~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+.|+.+++..|+.++|...+..+.....+.
T Consensus 619 ~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 619 LALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23478999999999999999999887764443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0063 Score=58.78 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=88.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...|+...|+.++..++...|... ....+|+.++...|-...|-..+.+++.+....+-.++.+|..|..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 345666999999999999888654 3678899999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.|+.+++++|+++.....+-.+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999998876555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.36 Score=46.45 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
..-...|+.++...+.+...|........ +.+.+.+--..|.+++..+|+++..|..-+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k---------------------k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA 146 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK---------------------KKKTYGEVKKIFAAMLAKHPNNPDLWIYAA 146 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------------HhcchhHHHHHHHHHHHhCCCCchhHHhhh
Confidence 34566788999999999999888776665 666689999999999999999999999999
Q ss_pred HHHHHcCC-hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 373 NAYYLTGD-HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 373 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
.-.+..+. .+.|...|.++++.+|+++..|.....
T Consensus 147 ~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 147 KWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 88887776 999999999999999999988765443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.12 Score=48.78 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=77.5
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc---------------------------ccccc
Q 009045 283 GIAYFQSGD-MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---------------------------GAGAN 334 (546)
Q Consensus 283 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---------------------------~~~~~ 334 (546)
|.-+++.|. -++|+..++.+++..+.+.......-......+.+.+. +....
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445566676 78899999999998888775433222221111111111 12233
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
+.-|.++...|+|.++.-+-.=..+++| ++.++..+|.++....+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3457778899999999999999999999 799999999999999999999998865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0075 Score=38.73 Aligned_cols=43 Identities=9% Similarity=-0.164 Sum_probs=35.2
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 521 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (546)
.+|.+|..+.+.|+|++|..+++.+++.+|+|..+......+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4678888999999999999999999999999988876655543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=49.87 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=76.4
Q ss_pred cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcc---
Q 009045 164 LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR--- 240 (546)
Q Consensus 164 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 240 (546)
...+++|+..|.-|+-..--. .......+.++..++++|..+|+. ..+..-+..|+..|.+++.....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-----~~~~s~~A~l~LrlAWlyR~~~~~----~~E~~fl~~Al~~y~~a~~~e~~~~~ 160 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-----KEKPSKKAGLCLRLAWLYRDLGDE----ENEKRFLRKALEFYEEAYENEDFPIE 160 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 446778888887777552111 223335567788888888888886 45556668888888888865432
Q ss_pred ---cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-HHHHHHHH
Q 009045 241 ---QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-DCIGNLGI 284 (546)
Q Consensus 241 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 284 (546)
...+++.+|.+..+.|++++|+.+|.+++....... ..+..+|+
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 246788899999999999999999999887643322 34444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.71 Score=45.63 Aligned_cols=297 Identities=12% Similarity=0.035 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQD 301 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 301 (546)
..+.+...|...+...|.....|...|..-.+.|..+.++++|++++.--|-....|..+-. +--..|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34556666667777777777777777777777777777777777777777766666654332 23345666666677777
Q ss_pred HHhhCCCCHHH---HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 009045 302 LILKDQNHPAA---LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL- 377 (546)
Q Consensus 302 al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 377 (546)
|......+..+ |..+-... ...+++..-...|++.+++--.....++..=.=+..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~e---------------------n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFE---------------------NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHhcccchhccHHHHHHHHHH---------------------hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 77665443322 22222211 256677777777777776532222222211111111
Q ss_pred -----cCChHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHhhhccCchh----HHHH-----------HHHHHHH---
Q 009045 378 -----TGDHRSSGKCLEKAAKL--EPNCMSTRYAVAVSRIKDAERSQEPTE----QLSW-----------AGNEMAS--- 432 (546)
Q Consensus 378 -----~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~l~~~~~~~~~~~----~~~~-----------~~~~~~~--- 432 (546)
+-..+++...-...... .+......-.+ ...+........... .+.. ......+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~-~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL-EIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH-HHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 12223333322222211 00000000000 000000000000000 0000 0000000
Q ss_pred ---HHh----cCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHH
Q 009045 433 ---ILR----EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAA 503 (546)
Q Consensus 433 ---~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 503 (546)
.+. ...+........|..........|+++.....+.+.+-+ .....|...+......|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 000 011122223345666666667778888888888776553 33466777777777777777777777766
Q ss_pred HHh-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 504 LKA-DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 504 l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+. .|..+.++..-+.+-...|++..|...+++..+-+
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 664 35566677777777777778888888877777655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.1 Score=47.27 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=137.3
Q ss_pred HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcc
Q 009045 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327 (546)
Q Consensus 248 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 327 (546)
+|.+....+-|++|...|++- .-+..+.. .+....+..+.|.++-+++ +.+..|..++...+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL------ 1115 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL------ 1115 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH------
Confidence 466666777778888777762 11222221 1223445666666665554 34667777777776
Q ss_pred ccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-hhHHHHHH
Q 009045 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC-MSTRYAVA 406 (546)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~ 406 (546)
+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+..... .+.-...+
T Consensus 1116 ---------------~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1116 ---------------QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred ---------------hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 788899999988764 567778888888889999999999888877653322 12222222
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHH
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF 486 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~ 486 (546)
.....+.. ++...+. .|+.+ -....|.-++..+.|+.|.-.|.. ...|-.++..
T Consensus 1176 yAkt~rl~--------------elE~fi~-----gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1176 YAKTNRLT--------------ELEEFIA-----GPNVA-NIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLAST 1229 (1666)
T ss_pred HHHhchHH--------------HHHHHhc-----CCCch-hHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHH
Confidence 22111110 1111111 11222 244567777788888888777653 2345577778
Q ss_pred HHHhccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 487 LDQASAVNVAKECLLAALKADP-------------------------KAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+..+|+|..|+..-++|-...- -+++-+-.+...|...|-+++-+..++.++-
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 8888888888888777633110 0123344455566777777777777766654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.13 Score=41.93 Aligned_cols=77 Identities=6% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--C--hHHHHHHHHHHHHcCCHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--N--CDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++|+..|...-+..-.. .-+.+..|.+..+.|+...|+..|..+-...|- - -.+...-+.++...|-|++-..
T Consensus 74 ~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~s 153 (221)
T COG4649 74 TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSS 153 (221)
T ss_pred chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHH
Confidence 356666665554433222 224555666666666766777666665443321 1 1123333444555555555444
Q ss_pred HHH
Q 009045 298 CFQ 300 (546)
Q Consensus 298 ~~~ 300 (546)
..+
T Consensus 154 rve 156 (221)
T COG4649 154 RVE 156 (221)
T ss_pred Hhh
Confidence 433
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0066 Score=45.42 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=53.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ 236 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~ 236 (546)
++.-++..|++-+|++..+..+...++.... ...+...|.++..++...-+-..+.--+-.++++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch---------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 4677899999999999999999885543211 1223333333322222111112222333444444445444
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 270 (546)
+.|..+..++.+|.-+-....|++++...++++.
T Consensus 73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4554444444444444444444444444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.9 Score=49.81 Aligned_cols=295 Identities=13% Similarity=0.036 Sum_probs=168.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHH-HHHHcCCHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI-AYFQSGDMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~ 297 (546)
-..|++..|..+|++++..+|+....+...-......|.++..+...+-.....++...-++.+|. +-+..++++.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 356899999999999999999988878877778888899999999888877777766666666553 4477888887766
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH-------hcCCCCHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL-------KADPKAAHIWAN 370 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~ 370 (546)
+.. ..+-.+..+.. +|.++.....+. .=...+.++..+..+ .........|..
T Consensus 1540 ~l~---~~n~e~w~~~~-~g~~ll~~~~kD----------------~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVES-IGKLLLRNKKKD----------------EIATLDLIENSRELVIENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred hhh---cccccchhHHH-HHHHHHhhcccc----------------hhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHH
Confidence 654 22222222221 455544221100 000011111111111 001111122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCM-----STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
+-.++... +.+.-++... ...+++. +-|.+. +.....+....+. ..+.......+...........
T Consensus 1600 ~~kLH~l~-el~~~~~~l~---~~s~~~~s~~~sd~W~~R----l~~tq~s~~~~ep-ILa~RRs~l~~~~~~~~~~~~g 1670 (2382)
T KOG0890|consen 1600 LMKLHLLL-ELENSIEELK---KVSYDEDSANNSDNWKNR----LERTQPSFRIKEP-ILAFRRSMLDLRMRSNLKSRLG 1670 (2382)
T ss_pred HHHHHHHH-HHHHHHHHhh---ccCccccccccchhHHHH----HHHhchhHHHHhH-HHHHHHHHHHHhccccccchhH
Confidence 22222111 1111111111 1111111 111111 1111111111111 1111111112222224455677
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CC----------C----
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PK----------A---- 510 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~---- 510 (546)
..|...|.+....|.++.|....-++.....+.+....|..+...|+-..|+..+++.++++ |+ .
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 89999999999999999999999998888888899999999999999999999999999753 32 1
Q ss_pred --HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHhc
Q 009045 511 --AHIWANLANAYYLTGDH--RSSGKCLEKVLMVYC 542 (546)
Q Consensus 511 --~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~ 542 (546)
..+...++......|+. +.-+.+|..+.++++
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 22344455555666664 245677888888776
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.027 Score=50.79 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999876544443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=37.41 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.++.+|..++++|+|++|..+.+.++++.|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34566777777777777777777777777777766543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=52.44 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=64.7
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+.+++.+....
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33456789999999999999999999999999999999999999999999999999999999998877654
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=1 Score=43.98 Aligned_cols=242 Identities=10% Similarity=0.054 Sum_probs=131.7
Q ss_pred HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 259 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
+...+.+.......|.++......+..+...|+.+.|+..+...+. +..... ...+++ .+|
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~---~~l~~f--------------E~a 310 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV---KSLMVF--------------ERA 310 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH---HHHHHH--------------HHH
Confidence 3444455555566888888888888888888888888888887776 111111 011111 123
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHH--------cCChHHHHHHHHHHH---hcCCCChhHHHHHH
Q 009045 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLA-NAYYL--------TGDHRSSGKCLEKAA---KLEPNCMSTRYAVA 406 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~--------~g~~~~A~~~~~~al---~~~p~~~~~~~~l~ 406 (546)
.+..-..+|..|-..+....+...-....|..++ .|+.. .|+-++|..+++... ...|++...-.
T Consensus 311 w~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~--- 387 (546)
T KOG3783|consen 311 WLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK--- 387 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---
Confidence 3333666788888888887776554444444444 33322 234444444443332 22222211110
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH--HHHHHHHHHH-----hcccHHHHHHHHHh-hccchhh-
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI--AWAGFAAVQK-----THHEVAAAFETEEN-ELSKMEE- 477 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-----~~~~~~~A~~~~~~-~l~~~~~- 477 (546)
...+ ...+...... ..+..+. .+..++.++. ...+..+....+.. ..++.+.
T Consensus 388 ---------------f~~R---Kverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 388 ---------------FIVR---KVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDE 448 (546)
T ss_pred ---------------HHHH---HHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHH
Confidence 0000 1111111111 1111111 1222332222 11222323333332 2322222
Q ss_pred -hHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHh
Q 009045 478 -CAGAGESAFLDQASAVNVAKECLLAALKAD---PK----AAHIWANLANAYYLTGD-HRSSGKCLEKVLMVY 541 (546)
Q Consensus 478 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~ 541 (546)
--++-+|.++..+|+-..|..+|..+++.. .. -|.++|.+|..|..+|. ..++..++.+|-+-+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 224578899999999999999999888531 11 27899999999999999 999999999997755
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.1 Score=43.41 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLI 303 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 303 (546)
..-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4556788899999998999999988888888889999999999999999999999998888887776 889999999999
Q ss_pred hhCCCCHHHHHHHHH
Q 009045 304 LKDQNHPAALINYAA 318 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~ 318 (546)
+.+|+.+..|...-.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999999887765433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.036 Score=44.90 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=66.1
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+..++.+.+...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+.+....|..+.+--.++.+++.+|+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 345677889899988888899999999999999999999999999999998888999988899999998888765
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=1 Score=48.37 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred ccccChhhHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHc----C---ChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 216 DKELEPEELEEILSKLKESMQSDTRQ---AVVWNTLGLILLKS----G---RLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
+..+....|++|+..|++.....|.. .++.+..|..+..+ | .+++|+..|++.. -.|.-+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence 45678899999999999999999876 45788888877653 2 5778888887754 356667778999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
|.++|++++-+++|.-+++..|.++..-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999998886543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.26 Score=37.35 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHH--HHhcccHHHHHHHHHhhccc--------------hhhhHHhhHHHHHHHhccHHHHHHHHHHHH------
Q 009045 447 AWAGFAAV--QKTHHEVAAAFETEENELSK--------------MEECAGAGESAFLDQASAVNVAKECLLAAL------ 504 (546)
Q Consensus 447 ~~~~l~~~--~~~~~~~~~A~~~~~~~l~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 504 (546)
+|..|+.. ....|.+++|...+.++++. .+...+-.|+..+..+|+|++++..-++++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 34444433 34556788888888775541 111335578889999999988777766666
Q ss_pred -HhCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 505 -KADPKAAHIW----ANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 505 -~~~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++.+....| ++.|..+..+|+.++|+..|+++-+++.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 4566665544 6789999999999999999999988764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.87 Score=40.15 Aligned_cols=212 Identities=12% Similarity=0.164 Sum_probs=128.3
Q ss_pred CchHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhccc----chhccchhhHHHHHHHhhc
Q 009045 132 SSSREEKGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC----EADIARPELLSLVQIHHAQ 203 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~ 203 (546)
....|...|++++++.+... .++-.+-.+++++|+|++-...|.+.+..-... ............+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS----- 116 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS----- 116 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh-----
Confidence 44777788999999888754 466677889999999999999999887652110 00000000000000
Q ss_pred cccccccCCCccccccChhhHHHHHHHHHHHHhc--CcccHHHHH----HHHHHHHHcCChHHHHHHHHhhHhcCC----
Q 009045 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQS--DTRQAVVWN----TLGLILLKSGRLQSSISVLSSLLAVDP---- 273 (546)
Q Consensus 204 ~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~al~~~p---- 273 (546)
...+.+--...|+..+.. +..+...|+ .+|.+|+..|.|.+-.+.+++.-....
T Consensus 117 ----------------tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 117 ----------------TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ----------------hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 111122222333322221 222333443 589999999999888887777654322
Q ss_pred --------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc
Q 009045 274 --------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 345 (546)
Q Consensus 274 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (546)
.-.++|..-...|..+.+..+-...|++++.+...-+..+ .+|.+..+- |..+.+.|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG--------------GKMHlreg 245 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG--------------GKMHLREG 245 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC--------------Cccccccc
Confidence 1234566667788888888888889999998765443332 244443321 55566889
Q ss_pred CHHHHHHHHHHHHhcCCC-----CHHH--HHHHHHHHHHcC
Q 009045 346 AVNVAKECLLAALKADPK-----AAHI--WANLANAYYLTG 379 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~-----~~~~--~~~l~~~~~~~g 379 (546)
+|++|-..|-.+++.... ...+ |..|+..+...|
T Consensus 246 ~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 246 EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 999999988888876433 2222 445566666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0096 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP 273 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 273 (546)
+++.+|.++...|++++|+..|++++++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.053 Score=40.70 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHH
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGD-----------MEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.-++..|++-+|++..+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|.....++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666666666666666666655444 334444555543321 23478889999999998877777
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
.+|.-+- ....|++++.-.++++.+
T Consensus 83 ~la~~l~---------------------s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLG---------------------SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhh---------------------hHHHHHHHHHHHHHHhcc
Confidence 7776543 234477777777777764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.16 Score=41.23 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..+..+-...++.+++...+..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+..--.++.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33344444444455555555555554555555555555555555555555555555554444444443333333333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.9 Score=43.53 Aligned_cols=60 Identities=8% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHh----------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
..++.++|..+..+..|++|.++|.+.-. .-|++...+-.+|..+...|.-++|++.|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 34677777777777777777777665421 13555555556666666666666666655
Q ss_pred HH
Q 009045 300 QD 301 (546)
Q Consensus 300 ~~ 301 (546)
-+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 43
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.4 Score=43.48 Aligned_cols=124 Identities=19% Similarity=0.093 Sum_probs=71.2
Q ss_pred HHHHHHhhHhcCCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 261 SISVLSSLLAVDPNNCDCIGN--LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|.+..+..+++..+.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale----------------- 112 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALE----------------- 112 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHH-----------------
Confidence 555555555566666555333 3555556666666666666677777777666666666655
Q ss_pred hHHHhhcC-HHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 339 ACLDQASA-VNVAKECLLAALKADPKAAHIWANL------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 339 ~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
..|. +.-+....+.+....|.+......+ +.....+|+..++.....++..+.|+++.....+
T Consensus 113 ----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 113 ----LDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred ----HhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 2222 3333333444666666655444333 6666666666666677777777766665444333
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.12 Score=37.89 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 334455555555555555555555555555555555555555555444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=32.93 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.++..+|.++...|++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57889999999999999999999999998875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.12 Score=46.65 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=48.3
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 7777888888888888888888877788888888888888888888888888887776554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.19 Score=42.41 Aligned_cols=103 Identities=16% Similarity=0.024 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN---NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINY 316 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 316 (546)
..++..+|..|.+.|++++|++.|.++...... ..+.+..+..+.+..+++.....+..++-..-.. ++. ..+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~-~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE-RRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH-HHHH
Confidence 457889999999999999999999998876433 2567888999999999999999999998765332 222 2222
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
-.++. |......++|..|...|-.++...
T Consensus 115 lk~~~----------------gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYE----------------GLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH----------------HHHHHHhchHHHHHHHHHccCcCC
Confidence 23332 444456777777777777665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=44.56 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHHHhc----C-c--ccHHHHHHHHHHHHHcCChHH-------HHHHHHhhHhcCC------CChHHH
Q 009045 220 EPEELEEILSKLKESMQS----D-T--RQAVVWNTLGLILLKSGRLQS-------SISVLSSLLAVDP------NNCDCI 279 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~----~-p--~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~p------~~~~~~ 279 (546)
....+++|++.|.-|+-. . + .-+..+..+|.+|...|+.+. |+..|.+++.... +...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345678888888777632 1 1 235688889999999999554 5555555554422 225688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP-AALINYAA 318 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 318 (546)
+.+|.++.+.|++++|.++|.+++....... .....++.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 9999999999999999999999997544333 24444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.2 Score=39.30 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=93.4
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCChH-HHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAV----VWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNNCD-CIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-~~~~la~~~~~ 288 (546)
+...+.++|+..|++++++.+...+ ++-.+..+++++|+|++-...|++.+.. ..+..+ ....+-..-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4566889999999999999886543 5666788899999999999988887653 111111 11111111111
Q ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC----
Q 009045 289 SGDMEQSAKCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP---- 362 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---- 362 (546)
..+.+--...|+..+.. +..+...| ...+..+|.++...+.|.+-.+.+++.-....
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLW-----------------FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLW-----------------FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceee-----------------eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22222222333332221 11111112 12223345555566666666555554433211
Q ss_pred --------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 363 --------KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 363 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
.-.++|..-...|-.+.+-.+-...|++++.+...-+..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 123455556677888888888888899998876554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.025 Score=34.40 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
.++.++|.+|...|++++|..++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 5678889999999999999999999888764
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.35 Score=47.48 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCcccHHHHHH--HHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 009045 226 EILSKLKESMQSDTRQAVVWNT--LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD-L 302 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 302 (546)
-++..+...+..++.++..+.. +...+...+....+...+..++..+|++..+..+|+......|..-.+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555666666677877776443 477778889999999999999999999999999999999888877776666655 8
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
....|++......+..++. ++.+...+|+..++.....++..+.|.++.+...+.....+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQ---------------LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HhcCcchHHHHhhHHHHHH---------------HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 8889999888776655554 466667899999999999999999999877666555554444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.041 Score=52.10 Aligned_cols=127 Identities=9% Similarity=0.086 Sum_probs=94.5
Q ss_pred ccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHH
Q 009045 216 DKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 216 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
.+.+..|+...|-..+..+++..|.++......+.++..+|.|+.+...+.-+-..-..-..+...+-+..+.+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567888899999999999999999999999999999999999999888766555444455666666778889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
...-.-.+.-.-.+++....-+. ...++|-++++...+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~---------------------sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAG---------------------SADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecc---------------------cHHHHhHHHHHHHHHHHHhccCCh
Confidence 88887777655444443321111 122667778888888888877765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.026 Score=48.02 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=55.3
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4788999999999999999999999999999999999999999999999999999875
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.024 Score=48.20 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
+.++.+.|.+.|.+++..-|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44445555555555555555555555555555555555555555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.1 Score=41.40 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=85.3
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhhccCchh
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|+++...-.|++++-......+.|...+......|+.+-|-..+.++.++.-... ..+..- ..+.+... ...
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~--a~f~e~~~---n~~ 383 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE--ARFEESNG---NFD 383 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH--HHHHHhhc---cHH
Confidence 566666666667666666666666666666666666666666666666665543322 211111 11111110 001
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHH---HHHHhhccchh-----hhHHhhHHH-HHHHhcc
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF---ETEENELSKME-----ECAGAGESA-FLDQASA 492 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~l~~~~-----~~~~~~la~-~~~~~g~ 492 (546)
....+...+ ... .|....+-..........|+.+.+. ..+........ ...+...+. .+.-.++
T Consensus 384 ~A~~~lq~i---~~e----~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 384 DAKVILQRI---ESE----YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HHHHHHHHH---Hhh----CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 111111111 011 1233334444444555555555555 22222111100 011122222 3445667
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 493 VNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
.+.|...+.++++..|++-..+..+-.+....+
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888999999999999988877777766655444
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.7 Score=42.86 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=110.4
Q ss_pred ccChhhHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------------
Q 009045 218 ELEPEELEEILSKLKESMQS------------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-------------- 271 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 271 (546)
+-....|++|...|.-++.. .|-+...+..++.++..+|+.+-|.....++|-.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 44567889999999888654 4566889999999999999999988888877531
Q ss_pred -------CCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 272 -------DPNNCDC---IGNLGIAYFQSGDMEQSAKCFQDLILKDQN-HPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 272 -------~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
.|.|-.. ++..-..+.+.|-+..|.++.+-.++++|. ++-+...+..+|..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL------------------ 389 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL------------------ 389 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH------------------
Confidence 2333322 233344556789999999999999999998 77776666665542
Q ss_pred HHhhcCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC
Q 009045 341 LDQASAVNVAKECLLAA-----LKADPKAAHIWANLANAYYLTGD---HRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 397 (546)
+..+|+=-|+.++.. +..-|+ ...-..++..|..... -..|...+.+|+...|.
T Consensus 390 --rareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 390 --RAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred --HHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 455555555555544 233343 2333455666666555 56788889999988884
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.22 Score=38.77 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCChHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-ADPK-AAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.....++++.++... ....+..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.
T Consensus 31 s~~s~f~lAwaLV~S------------------~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~ 92 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS------------------RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR 92 (149)
T ss_pred hHHHHHHHHHHHHcc------------------cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH
Confidence 345567777777632 145667889999999997 4554 56678899999999999999999
Q ss_pred HHHHHHhcCCCChhHHH
Q 009045 387 CLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~ 403 (546)
+.+..++..|++..+..
T Consensus 93 yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 93 YVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHhhCCCcHHHHH
Confidence 99999999999986653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.25 E-value=4.6 Score=42.13 Aligned_cols=366 Identities=15% Similarity=0.095 Sum_probs=181.6
Q ss_pred HHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 136 EEKGLVHVARKMPK---N-AHAHFLL--GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 136 a~~~~~~~l~~~p~---~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
|...+++.++.--. . ....+.+ ...+...+++..|++.++......-.. ..+... +.+....+.+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~--v~~~l~~~~l~-- 189 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVF--VLASLSEALLH-- 189 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHH--HHHHHHHHHHH--
Confidence 55666666654333 2 2222222 223333479999999999998874211 022221 22222222222
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhc------C----cccHHHHHHHHH--HHHHcCChHHHHHHHHhhH---hc---
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQS------D----TRQAVVWNTLGL--ILLKSGRLQSSISVLSSLL---AV--- 271 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~------~----p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al---~~--- 271 (546)
+..+..+.+++.++++... + +....+|..+-. ++...|+++.+...+++.- ..
T Consensus 190 ---------l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 190 ---------LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred ---------hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 2333346666666665321 1 112334444333 4566777767666554432 11
Q ss_pred CC-------C---------------C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 009045 272 DP-------N---------------N--------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP----- 310 (546)
Q Consensus 272 ~p-------~---------------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 310 (546)
.+ + . .-++..-|......|..++|.++++++++.-.+..
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 11 0 0 01233445666677777799999988886421111
Q ss_pred ------------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC---CC------CHHHHH
Q 009045 311 ------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD---PK------AAHIWA 369 (546)
Q Consensus 311 ------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~ 369 (546)
..|...-.++ .....+.+..-.+++..|......+.... |. .+..++
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~------------~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~y 408 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCY------------LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHY 408 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHH------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Confidence 1111111111 11223555567889999988888776653 22 467889
Q ss_pred HHHHHHHHcCChHHHHHHHH--------HHHhcCCCChhHHHH---HHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 370 NLANAYYLTGDHRSSGKCLE--------KAAKLEPNCMSTRYA---VAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 370 ~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~~---l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
..|..+...|+.+.|...|. .+....+.+....+. +.............. . .+...+....
T Consensus 409 L~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~-~-------~~~~l~~~i~ 480 (608)
T PF10345_consen 409 LLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSE-S-------ELNELLEQIE 480 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhh-h-------HHHHHHHhcC
Confidence 99999999999999999998 333444443322221 111111111111100 0 1223333222
Q ss_pred CCCCCcHH----HH-HHHHHHHH--hcccHHHHHHHHHhhccch---------hhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 439 PVQIEPPI----AW-AGFAAVQK--THHEVAAAFETEENELSKM---------EECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 439 ~~~~~~~~----~~-~~l~~~~~--~~~~~~~A~~~~~~~l~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
+...+.+. .| ..+-..+. ..-...++...+...++.. -..++..++..++ .|+..+.......
T Consensus 481 p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~ 559 (608)
T PF10345_consen 481 PLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSAR 559 (608)
T ss_pred ccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 22111111 12 22111111 1112224444444333322 1122445555555 6777776666666
Q ss_pred HHHhC---CCCHH-HHH-----HHHHHHHhcCChHHHHHHHHHHHH
Q 009045 503 ALKAD---PKAAH-IWA-----NLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 503 al~~~---p~~~~-~~~-----~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.... |+... .|. .+...+...|+.++|.....+.-.
T Consensus 560 a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 560 AFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 66543 33333 332 455668889999999998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.21 Score=53.84 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred ChhhHHHHHH------HHHH-HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHH
Q 009045 220 EPEELEEILS------KLKE-SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~------~~~~-al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 284 (546)
..|.+.+|.+ .+.. .-.+.|.....+..++.++.+.|++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 4455665555 5553 33457888899999999999999999999998887654 3455778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 285 AYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..+..++...|...+.++..+ .|.-.....++..++. ..++++.|+.+.+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---------------------~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---------------------GVEEADTALRYLES 1082 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---------------------hHHHHHHHHHHHHH
Confidence 999999999999999988765 2333334455555544 67889999999999
Q ss_pred HHhcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 357 ALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 357 al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
|+..... ....+..+++++..++++..|+...+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9885322 4566777888888888888888777766654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.44 Score=37.18 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHhhHh-cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009045 241 QAVVWNTLGLILLKSG---RLQSSISVLSSLLA-VDPN-NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 315 (546)
.....++++.++.... +..+.+.+++..++ -.|. ..+..+.|+..++++++|+.++.+.+..++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567888999988765 45678889999986 4453 46788999999999999999999999999999999887643
Q ss_pred H
Q 009045 316 Y 316 (546)
Q Consensus 316 l 316 (546)
.
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=41.21 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
..++.+++...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+...+..+..+.+.-.++.++..+|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 34566888888888878889999988899999999999999999999988888787888888888888888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.051 Score=32.95 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
..++..+|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999999987
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.9 Score=42.17 Aligned_cols=255 Identities=13% Similarity=0.042 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+...+.+.......|+++...+..+.++...|+.+.|+..+...+...-. ..-.++.+|.++.-+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55556666666788999999999999999999988899999988871111 1345778899999999999999999988
Q ss_pred HhhCCCCHHHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH---HhcCCCCHH---HHHHHHHHH
Q 009045 303 ILKDQNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA---LKADPKAAH---IWANLANAY 375 (546)
Q Consensus 303 l~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a---l~~~p~~~~---~~~~l~~~~ 375 (546)
.....-....+..++ .+++.. . ..+....|+-++|-.+++.. +...|.+.. .....+.-+
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~-~------------~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf 396 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQN-W------------EVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERF 396 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhcc-H------------HHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHH
Confidence 776543333344443 333210 0 11111233444444444433 233333221 122223333
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE-PPIAWAGFAAV 454 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 454 (546)
...+. -.+...+. .|-...+++..+...+. .+.. . .+..........+.+ ....++.+|.+
T Consensus 397 ~~~~~-~~~~~~la-----~P~~El~Y~Wngf~~~s-----~~~l---~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~ 458 (546)
T KOG3783|consen 397 VKRGP-LNASILLA-----SPYYELAYFWNGFSRMS-----KNEL---E----KMRAELENPKIDDSDDEGLKYLLKGVI 458 (546)
T ss_pred hcccc-cccccccc-----chHHHHHHHHhhcccCC-----hhhH---H----HHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 33321 00000000 01111111111111100 0000 0 011111111111222 22346788999
Q ss_pred HHhcccHHHHHHHHHhhccc---------hhhhHHhhHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 009045 455 QKTHHEVAAAFETEENELSK---------MEECAGAGESAFLDQASA-VNVAKECLLAALKADPKA 510 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 510 (546)
+...|+-..|...+...++. ..+.++|.+|..+...+. ..++.+++.+|-+...++
T Consensus 459 lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 459 LRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999999998888775532 233678999999999998 999999999998876443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=42.23 Aligned_cols=163 Identities=14% Similarity=0.116 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK------------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD- 291 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 291 (546)
.++++.=.+.+..+|+...+|+..=.++.. +.-+++-+.+...+++.+|+...+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 677888888888999888777765444332 2346677888889999999999999999999987764
Q ss_pred -HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 292 -MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 292 -~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
+..-++..+++++.+|.+..+|...-.+.... ........+-+++..+++..++.+..+|..
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-----------------~~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-----------------ERSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-----------------hcccccchhHHHHHHHHHhccchhhhHHHH
Confidence 68889999999999999999987666555421 112234677788999999999999999998
Q ss_pred HHHHHHH------cCC------hHHHHHHHHHHHhcCCCChhHHHH
Q 009045 371 LANAYYL------TGD------HRSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 371 l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
...++.. .|+ ...-+..-..++-.+|++..+|+.
T Consensus 189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 8877763 231 234455666777789999887764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.14 Score=48.75 Aligned_cols=125 Identities=14% Similarity=0.027 Sum_probs=99.5
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccc
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 332 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (546)
+..|+.-.|-.-...++...|.++......+.+...+|+|+.+...+..+-..-.....+..-+-..+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~------------ 367 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL------------ 367 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh------------
Confidence 45688888988899999999999999999999999999999999888766554333333332222222
Q ss_pred cccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 333 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
..+|++++|.....-.+...-+++++....+.....+|-++++..++++.+.++|..
T Consensus 368 ---------~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 368 ---------HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ---------hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 278999999999998888777778877777777788899999999999999998754
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.37 Score=36.56 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHHH--HHHHcCChhHHHHHHHHHHHHhcccchhcc--chhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 152 HAHFLLGL--MYQRLGQPLKAVSSYEKAEEILLRCEADIA--RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 152 ~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
.+|..|+. -.+.-|-|++|...++++++....-+.... +..+. +.+|-.++.++..+|++ +++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFD--A~chA~Ls~A~~~Lgry-----------~e~ 74 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFD--AFCHAGLSGALAGLGRY-----------DEC 74 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHH--HHHHHHHHHHHHHTT-H-----------HHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHH--HHHHHHHHHHHHhhccH-----------HHH
Confidence 34444443 445678999999999999998543222111 12222 34455555555555554 776
Q ss_pred HHHHHHHHh-------cCcccHH----HHHHHHHHHHHcCChHHHHHHHHhhHh
Q 009045 228 LSKLKESMQ-------SDTRQAV----VWNTLGLILLKSGRLQSSISVLSSLLA 270 (546)
Q Consensus 228 ~~~~~~al~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 270 (546)
+..-.+++. ++.+... +.+..|..+...|+.++|+..|+.+-+
T Consensus 75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 666655553 3333322 344566677777777777777776644
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.1 Score=50.27 Aligned_cols=93 Identities=16% Similarity=0.013 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
..+....|+..|.++++..|.....+.+.+.+++.++ -.|+.-.|+..+..+++++|....+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk------------------W~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK------------------WRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh------------------ccccHHHHHHhHHhhccCChHHHHH
Confidence 3445667888888888888888888888877776431 2456677888888888888888889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
|+.|+.++..++++.+|+.+...+....|.+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999988888877777744
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.72 Score=36.88 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
+......-...++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++......+..+...-.++.++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3334444444666666666666666666666666666666666666666666666666555444443333333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.19 Score=48.40 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=82.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 294 (546)
.+..+.+..++..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.|+.++..++++.+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 34567789999999999999999999999999998875 566678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 009045 295 SAKCFQDLILKDQNHP 310 (546)
Q Consensus 295 A~~~~~~al~~~p~~~ 310 (546)
|+.+...+....|.+.
T Consensus 464 al~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDV 479 (758)
T ss_pred hhhhHHHHhhcCchhh
Confidence 9999988888888554
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.086 Score=47.16 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=77.1
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN-LGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.|.++-...|+++..|...+..-...|-+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555678899999998888888899999999999999999999999987 566678899999999999999999999
Q ss_pred CHHHHHHHHHH
Q 009045 309 HPAALINYAAL 319 (546)
Q Consensus 309 ~~~~~~~l~~~ 319 (546)
++..|...-..
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 99888765443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.2 Score=39.29 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAK 297 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~ 297 (546)
+++-+.+...+++.+|+...+|+.+..++.+.+. +..=+....++++.+|.+..+|...-.+..... ...+-++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4788888999999999999999999999987764 678899999999999999888876655554332 3567788
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+..+++.-++.|..+|.....++.....+..... .........-++....++-.+|++..+|+..
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~---------~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN---------FMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCc---------cCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 8899999999999999988888764433221100 0011124556677778888899999888763
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.12 Score=46.27 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN-LANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~ 376 (546)
.|.++....++++..|...+.... +.|.+.+--..|.+++..+|.+++.|.. -+.-+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~---------------------k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~ 153 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVI---------------------KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF 153 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh
Confidence 344555567888888877766555 6778899999999999999999999987 566778
Q ss_pred HcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
..++++.+...|.++++++|+++..|.....
T Consensus 154 ~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 154 EIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred hhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 8999999999999999999999988875443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.42 Score=43.14 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=66.4
Q ss_pred HHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 465 FETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 465 ~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+....+.+......++..++..+...|+++.++..+++.+..+|-+..+|..+-.+|...|+...|+..|++.-++.
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 33344445555566778888899999999999999999999999999999999999999999999999999987754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.6 Score=41.19 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=24.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
....+..|.+.|.+.=. ...+-.++...++|.+|....++--+.
T Consensus 759 ~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc
Confidence 44555556665554322 123455666778888887766554333
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.21 Score=37.07 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=41.1
Q ss_pred HHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 487 LDQASAVNVAKECLLAALKADPK---------AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..+.|+|..|++.+.+.+..... ...++.++|.++...|++++|+..+++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44677777777777776654221 1356777888888889999999999888887643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.7 Score=40.45 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=66.3
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
.....|+++++....... ++-|.- ..-...++..+.+.|..+.|+..- .++...+.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl----------- 329 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELAL----------- 329 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHH-----------
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHH-----------
Confidence 345668898877776521 112222 344666777788888888876653 24555665554
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+.|+++.|.+..+ ..++...|..||......|+++-|..+|+++-
T Consensus 330 -------------~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 330 -------------QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp -------------HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred -------------hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 7889988887654 34478899999999999999999999998764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=5.2 Score=36.64 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcccc
Q 009045 138 KGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDK 217 (546)
Q Consensus 138 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 217 (546)
+....+++++|..+.++..|+.--. --..+|.+.|++|++.... .+.........|..
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~----------------~yr~sqq~qh~~~~---- 262 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGET----------------IYRQSQQCQHQSPQ---- 262 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHH----------------HHhhHHHHhhhccc----
Confidence 4566788999999999988876543 2467888899998876211 10100000000100
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAV--VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 293 (546)
. +...+.+ .+.. +-..++.|-.++|+..+|++.|+...+-.|-. ..++-+|-..+..+.-|.
T Consensus 263 -------~------da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 263 -------H------EAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred -------h------hhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111122 2222 33468899999999999999999888776622 234445555555555444
Q ss_pred HHHHHH
Q 009045 294 QSAKCF 299 (546)
Q Consensus 294 ~A~~~~ 299 (546)
+....+
T Consensus 329 DvqavL 334 (556)
T KOG3807|consen 329 DVQAVL 334 (556)
T ss_pred HHHHHH
Confidence 444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.73 E-value=6.8 Score=37.62 Aligned_cols=296 Identities=12% Similarity=0.094 Sum_probs=168.9
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
-++.-++.+|.+...|+.|..-+..+|.+++-.+.|++...-.|-...+|...-..-....+|..-...|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 5667788899999999999999999999999999999999988888888876666566678888888888888864322
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------cCC
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL---------TGD 380 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---------~g~ 380 (546)
.+.|...- -|.++-+.. ..| ...-..-+|.+..-.+.-.+|.....|...+..+.. +.+
T Consensus 109 ldLW~lYl-~YIRr~n~~--------~tG---q~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqr 176 (660)
T COG5107 109 LDLWMLYL-EYIRRVNNL--------ITG---QKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQR 176 (660)
T ss_pred HhHHHHHH-HHHHhhCcc--------ccc---chhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHH
Confidence 33443222 222211100 000 011123344444444444677777777776665442 334
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHH------HHHHHHHhhhccCchhHHHHHHHHHHHHHhc---CCCCCC---------
Q 009045 381 HRSSGKCLEKAAKLEPNCMSTRYAV------AVSRIKDAERSQEPTEQLSWAGNEMASILRE---GDPVQI--------- 442 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p~~~~~~~~l------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------- 442 (546)
.+.-...|.+++..--++..-.+.- ....+-......+....+..+...+...... ....+|
T Consensus 177 id~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 177 IDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccc
Confidence 5566677888876543433222110 0000000000111111111222112111111 111111
Q ss_pred --CcHHHHHHHHHHHHhcc------cHHHHHH-HHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 443 --EPPIAWAGFAAVQKTHH------EVAAAFE-TEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 443 --~~~~~~~~l~~~~~~~~------~~~~A~~-~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
....-|.++...-...+ -..+-+. .+.+.+. ...+..|+.-...+...++-+.|+...++++...|.
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-- 334 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-- 334 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--
Confidence 11112555544433222 1222222 2223333 344566776666777888889999888888776665
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
..+.++.+|....+-+.-..+|+++.+-+
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 78889999998888888888888877654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=13 Score=40.44 Aligned_cols=141 Identities=8% Similarity=0.012 Sum_probs=89.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHH
Q 009045 156 LLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESM 235 (546)
Q Consensus 156 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al 235 (546)
....++.....|++|+..|++.....|.-... -.+.+..|......... .-....+++|+..|++.-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 546 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG---------YEAQFRLGITLLEKASE----QGDPRDFTQALSEFSYLH 546 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------hHHHHHhhHHHHHHHHh----cCChHHHHHHHHHHHHhc
Confidence 34556677788999999999999887754221 12233333333222221 112256889999998854
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----GDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~ 310 (546)
..|.-+--|...|.+|.++|++++-+++|.-+++..|+.+..-...-.+-+++ .+-..|....--++..-|...
T Consensus 547 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 547 -GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred -CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 45666777888999999999999999999999999998876543333222221 122334444445555555543
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.15 Score=30.10 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
+++..||.+-...++|++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.40 E-value=2 Score=36.37 Aligned_cols=96 Identities=7% Similarity=-0.129 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-----hhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHH--
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-----EECAGAGESAFLDQASAVNVAKECLLAALKADP--KAAHI-- 513 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~-- 513 (546)
....++..+|..|.+.|+++.|++.|.+..+.. ..+.++.+..+....+++.....++.++-..-. .+...
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345678899999999999999999999866532 225567788888899999999999998877533 33332
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHH
Q 009045 514 --WANLANAYYLTGDHRSSGKCLEKVL 538 (546)
Q Consensus 514 --~~~lg~~~~~~g~~~~A~~~~~~al 538 (546)
...-|..+...++|.+|...|-.+.
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 2344667788888888888876554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.5 Score=40.77 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=103.3
Q ss_pred CChhHHHHHHHHHHHHhcccchhc---cchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc----
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADI---ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS---- 237 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~---- 237 (546)
.-|++|...|.-+....+-+.... ..|.. +.....++.+....|+. -+..+-.+.++-.+++++.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYH---vdsLLqva~~~r~qgD~----e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYH---VDSLLQVADIFRFQGDR----EMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcc---hhHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHHhcccccc
Confidence 458899999998887744331111 12322 23333444444445554 44455556666667766542
Q ss_pred ----------CcccHH---HHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-ChHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 009045 238 ----------DTRQAV---VWNTLGLILLKSGRLQSSISVLSSLLAVDPN-NCDCIGNLGIAY-FQSGDMEQSAKCFQDL 302 (546)
Q Consensus 238 ----------~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~a 302 (546)
.|.+-. +++..-..+.+.|-+..|.++++-.++++|. ++-+...+..+| .+..+|+--++.++..
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 222322 3444455567889999999999999999998 777666666655 3556676666666655
Q ss_pred -----HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc--CHHHHHHHHHHHHhcCCC
Q 009045 303 -----ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPK 363 (546)
Q Consensus 303 -----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~ 363 (546)
+...|+... -..++..|.. +.. .-+.|...+.+|+...|.
T Consensus 405 e~~n~l~~~PN~~y-S~AlA~f~l~--------------------~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGY-SLALARFFLR--------------------KNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCchH-HHHHHHHHHh--------------------cCChhhHHHHHHHHHHHHHhCcH
Confidence 334454432 2344555542 111 367788888899888773
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.85 Score=45.35 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
++.+-|.-+++..+|..+++.|...+..-|.+ +.....++.+|..+.+.+.|.+++++|-+.+|.++-......
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45566777888899999999999888775543 556778889999999999999999999999988876655554
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.+.. ..+.-++|+.+......
T Consensus 436 ~~~~---------------------~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFL---------------------AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHH---------------------HhcchHHHHHHHHHHHh
Confidence 4444 55666677766665543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.69 Score=41.24 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
...++=..+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.+...+...|+.+.+-......
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444556788899999999999999999999999999999999999999999999999999999998776544433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.12 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEK 176 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~ 176 (546)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5788999999999999999998763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.19 Score=29.64 Aligned_cols=29 Identities=34% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999997
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=4.2 Score=33.55 Aligned_cols=137 Identities=13% Similarity=0.120 Sum_probs=93.8
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
+.+.+..++|+..|..+-+-.-.. .-+....|.+....|+...|+..|..+-...|- +.....++++-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlra-------- 138 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRA-------- 138 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHH--------
Confidence 456688899999998876654443 345667788999999999999999998765442 333323333221
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAAL-KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+..+...|.|++-....+..- ..+|-...+...||..-++.|++.+|...|..... +...+....+.+
T Consensus 139 --------a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 139 --------AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred --------HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 223347888887766555432 23455667888899999999999999999999887 444443333333
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.99 Score=48.96 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=97.5
Q ss_pred cchHHHhhcCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009045 337 EGACLDQASAVNVAKE------CLL-AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 409 (546)
.|......|.+.+|.+ .+. ..-.+.|.....+..++.++...|++++|+..-.++.-+......
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--------- 1008 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--------- 1008 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc---------
Confidence 4444555667776666 555 233457888899999999999999999999988887654321100
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh----------ccchhhhH
Q 009045 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE----------LSKMEECA 479 (546)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~~~~~ 479 (546)
...++....+.+++......++...|...+.+. ..|.....
T Consensus 1009 -----------------------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 1009 -----------------------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred -----------------------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 000001111222222222222222222222221 11222233
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADP--------KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..+++.++...++++.|+++.+.|+...- .....+..++..+...+++..|....+....+|.
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 44666677777888888888888877432 2345566777777778888888877777777664
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=9.5 Score=37.36 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=43.0
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhcCCCCh
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--------------------TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~~ 399 (546)
|....++.+|+......++.+..+..+...+..-+.. -.++.+++..|++.+..+..+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 3456778888888888888877777666666555444 5567888888888888776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.14 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777777665
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=12 Score=37.77 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+.+-|.-.++..+|..++++|...+..-|.+.....- +.... .+..||..+.+.+.|.++++.|-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR--------------~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQR--------------ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHH--------------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999887765443211 22221 23445568899999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
+.+|.++-....+-.+....|.-++|+.+........
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999988888889999999999999988876553
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.68 Score=34.33 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHcCChHHHHHHHHhhHhcCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPN---------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45778899998888777765221 245678899999999999999999999998743
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.55 Score=27.36 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHH--HHHHHhc
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYE--KAEEILL 182 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p 182 (546)
++.++.+|..+...|++++|+..|+ -+..+++
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999944 7776644
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.5 Score=41.68 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=40.6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++.|+++.|.+..++ .+++..|..||...+.+|+++-|.++|+++- -+..|..+|...|+.+.=.+.
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHH
Confidence 345666666655432 2355677777777777777777777777642 234455566666665444444
Q ss_pred HHHH
Q 009045 299 FQDL 302 (546)
Q Consensus 299 ~~~a 302 (546)
.+.+
T Consensus 396 ~~~a 399 (443)
T PF04053_consen 396 AKIA 399 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.03 E-value=8.8 Score=34.47 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=87.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCChHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDT--------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNNCDCIGNLGI 284 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~ 284 (546)
....+++++|+..|.+.+.... ........++.+|...|++..--+.....-.. .|....+...+..
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 3577889999999999986521 22447788999999999887654444332221 1111111111111
Q ss_pred H-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc---
Q 009045 285 A-YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--- 360 (546)
Q Consensus 285 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 360 (546)
- -.....++.-+......++........+..+..-. .+...+.+.|.|.+|+......+.-
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~---------------Kli~l~y~~~~YsdalalIn~ll~ElKk 157 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELEC---------------KLIYLLYKTGKYSDALALINPLLHELKK 157 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 1 11223344444444444433221111111111111 1233445888888888877665432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 361 ---DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 361 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+.-..++..-..+|....+..++...+..+-.
T Consensus 158 ~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 158 YDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 233456677777888888888777777666543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.1 Score=40.62 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999998764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.3 Score=29.77 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=16.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
++...+.++|+..++++++..++....+..+|.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3344455555555555555555444444444433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.84 E-value=9.8 Score=34.58 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------------hcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------AVDPNNCDCIGNLGI-AYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 302 (546)
.++..+..+|..+++.|++.+|..+|-..- +-.|...+.+...+. -|...++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 568899999999999999999988875431 124555555555544 456779999998887776
Q ss_pred Hhh----CCC---------CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 009045 303 ILK----DQN---------HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369 (546)
Q Consensus 303 l~~----~p~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 369 (546)
.+. +|. ......+...++...-++ .....+..-.+.|+..++.+|.......
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~---------------~~~~~F~~L~~~Y~~~L~rd~~~~~~L~ 232 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER---------------DNLPLFKKLCEKYKPSLKRDPSFKEYLD 232 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH---------------T-HHHHHHHHHHTHH---HHHHTHHHHH
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc---------------CcHHHHHHHHHHhCccccccHHHHHHHH
Confidence 655 331 111223333333211000 0112234444555555666666777777
Q ss_pred HHHHHHHHcC
Q 009045 370 NLANAYYLTG 379 (546)
Q Consensus 370 ~l~~~~~~~g 379 (546)
.+|..|+...
T Consensus 233 ~IG~~yFgi~ 242 (260)
T PF04190_consen 233 KIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHH---
T ss_pred HHHHHHCCCC
Confidence 8888887644
|
; PDB: 3LKU_E 2WPV_G. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.71 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~ 298 (546)
++.+|-.+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.75 Score=43.26 Aligned_cols=84 Identities=6% Similarity=0.003 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHHHHHHhcCc------ccH-----HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT------RQA-----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p------~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
..|+|..|++++.+.-.... ++. .+-..+..||.++++.+-|+....+.|.++|....-+...|.++..
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 44555666666655443321 111 2345689999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 009045 289 SGDMEQSAKCFQDLI 303 (546)
Q Consensus 289 ~g~~~~A~~~~~~al 303 (546)
+.+|.+|.+.+.-+.
T Consensus 275 LeRy~eAarSamia~ 289 (569)
T PF15015_consen 275 LERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766554
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.71 Score=41.14 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=58.9
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 340 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
.+.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4458899999999999999999999999999999999999999999999999999999876543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.9 Score=36.62 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 009045 225 EEILSKLKESMQS-DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN----NCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 225 ~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 296 (546)
++|...|-++-.. .-++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.+|..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 6677766655332 1256788888888776 57888999999999988443 4788899999999999988874
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.17 E-value=15 Score=33.79 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.-.+..+..+-++.-..+++++|+.+.++..|+.- ..--..+|.+.++++++.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 33455666666777778888888888888777643 223456777777777764
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.12 E-value=17 Score=38.85 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
...|...+.++.+.|+.++|+..|...++.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 457888899999999999999987665543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.5 Score=39.27 Aligned_cols=62 Identities=23% Similarity=0.072 Sum_probs=55.0
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
....+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|+..|++.-+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 33455678899999999999999999999999999999999999999999999998876654
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.96 E-value=15 Score=33.41 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHcCChH-HHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH----------
Q 009045 241 QAVVWNTLGLILLKSGRLQ-SSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI---------- 303 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 303 (546)
+....-+++.++...+.-+ +-....+++++. .-.++..+..+|..|++.|++.+|..+|-..-
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~l 127 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVML 127 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHH
Confidence 3344455666665554322 223334444433 22568899999999999999999988873321
Q ss_pred ------hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 304 ------LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 304 ------~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
+-.|...+.+...+.+. |...++...|...+..-++.
T Consensus 128 l~~~~~~~~~~e~dlfi~RaVL~--------------------yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 128 LEEWSTKGYPSEADLFIARAVLQ--------------------YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHH--------------------HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHH--------------------HHHhcCHHHHHHHHHHHHHH
Confidence 12233344443333332 34678888888877666554
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.4 Score=29.68 Aligned_cols=56 Identities=16% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHHHHh
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLA---NAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
-+....+.++|+..++++++..++.++-+..+| .+|...|+|.+.+++--.=+++.
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999999888777666555 46788899998888776666554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.11 E-value=28 Score=35.37 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhc-------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAV-------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
|..+|.--...=+++-|.+.|.++-.+ ......--..+|.++.-.|+|.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 555666556666777777777665332 0111122345677778888888888888663
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.03 E-value=17 Score=32.78 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=111.3
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH-HH
Q 009045 338 GACLDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA-VS 408 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~ 408 (546)
+.-..+.+++++|+..|.+.+...-. .......++.+|...|++..--+.....-+.-.+......... ..
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 33344788999999999999876211 3456788999999999986443333222211111111111000 01
Q ss_pred HHHHhhhccCc--------hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc---ch--
Q 009045 409 RIKDAERSQEP--------TEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS---KM-- 475 (546)
Q Consensus 409 ~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~---~~-- 475 (546)
.+.......+. .....|+..+-...++. ..-..+..++.+.|.|.+|+......+. ..
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~---------~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD 160 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRL---------ELECKLIYLLYKTGKYSDALALINPLLHELKKYDD 160 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence 11111111111 12234444444444443 3445677888999999999987765322 11
Q ss_pred ---hhhHHhhHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 476 ---EECAGAGESAFLDQASAVNVAKECLLAALKA-----DPKAAHIW--ANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 476 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
-...+..-..+|....+..++...+..|-.. .|....+. ..-|...+.-.+|.-|..+|-++++-|.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 1133445556788888888887777766543 23332222 2336666788899999999999887664
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.5 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
|+.+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443333444444444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.50 E-value=6.9 Score=33.40 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHH
Q 009045 346 AVNVAKECLLAALKADPK----AAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 346 ~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A 384 (546)
+.++++..+.+++++.+. +++++..|+.++..+|+++.|
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444322 355555555555555555554
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.18 E-value=4.2 Score=38.54 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHcCChHHHHHHHHhhHhcC--------CCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 250 LILLKSGRLQSSISVLSSLLAVD--------PNN----------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 250 ~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
..++++++|..|.--|..++++. |.. ..+...|..||..+++.+.|+....+.+-++|....
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 34455555555555555555541 111 124557899999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
.+...+.++. .+.+|.+|-..+.-+
T Consensus 264 nHLrqAavfR---------------------~LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFR---------------------RLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 8777777766 566677766655443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=37 Score=35.56 Aligned_cols=141 Identities=9% Similarity=-0.059 Sum_probs=78.8
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
..++++.....+...-..........+.+|.++...|+.++|...|+++.. +. ..+-.++...++...........
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHHHcCCCCCCCCCCCC
Confidence 677888877777775444445678899999999999999999999999854 22 23334444444322111000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
.. ...+ .. ..-...+..+...|+...|.......+...+......++......|.++.++....+
T Consensus 400 ~~------~~~~-------~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 400 KP------DSAL-------TQ--GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred ch------hhhh-------cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 00 0000 00 112344455556666666666665544444444445555556666666666655443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.7 Score=37.74 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4445677888999999999999999999999999999999999999999999888877543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.79 E-value=13 Score=29.91 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~ 422 (546)
..+.....+.+++..+..++.++..+..+..+|... +..+.+..++. .++....-..+..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~~~~--------------- 78 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKVGKL--------------- 78 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHHHHH---------------
Confidence 457788899999998888777788888888888765 34455555542 1111111111100
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHH
Q 009045 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLA 502 (546)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 502 (546)
... ...|.....++.+.|++.+|+..+ ....++++.|++++.+
T Consensus 79 -----------c~~--------~~l~~~~~~l~~k~~~~~~Al~~~------------------l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 -----------CEK--------AKLYEEAVELYKKDGNFKDAIVTL------------------IEHLGNYEKAIEYFVK 121 (140)
T ss_pred -----------HHH--------cCcHHHHHHHHHhhcCHHHHHHHH------------------HHcccCHHHHHHHHHh
Confidence 000 123556666677777777777653 2233778888888886
Q ss_pred HHHhCCCCHHHHHHHHHHHHh
Q 009045 503 ALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 503 al~~~p~~~~~~~~lg~~~~~ 523 (546)
..+++.|..++..+..
T Consensus 122 -----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 122 -----QNNPELWAEVLKALLD 137 (140)
T ss_pred -----CCCHHHHHHHHHHHHc
Confidence 3567888888776653
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.72 E-value=12 Score=34.53 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
..+..+|...++|.+|+......+.-..+-+ +-..++.++..-..+| ....+..+|...+..|
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD------DK~lLvev~llESK~y-----------~~l~Nl~KakasLTsA 194 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLD------DKILLVEVHLLESKAY-----------HALRNLPKAKASLTSA 194 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc------cccceeeehhhhhHHH-----------HHHhcchhHHHHHHHH
Confidence 4578889999999999998888776532211 1112223333333333 3334447776666655
Q ss_pred Hhc-----Cccc--HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChH---HHHHHHHHHHHcCCHHHHHH--HH
Q 009045 235 MQS-----DTRQ--AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCD---CIGNLGIAYFQSGDMEQSAK--CF 299 (546)
Q Consensus 235 l~~-----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~ 299 (546)
-.. .|.. +..-..-|..+....+|..|..+|-.+++-.. ++.. ++..+-.+-..++..++--. .-
T Consensus 195 RT~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 195 RTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred HHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 322 1211 12223346666677899999999988887522 1122 33333444445555555333 33
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
+.+++....+.++....+..+..+ .+.+|+.|+..|..-+..+|
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nR-------------------SLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNR-------------------SLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCC-------------------cHHHHHHHHHHhHHHHhcCh
Confidence 445666666777777777766533 56677888888777776554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=44 Score=35.02 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=41.1
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 486 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.....++++.....+...-..........|++|..+...|+.++|..+|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444778888777777765443345677889999998889999999999998743
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.38 E-value=1.5 Score=26.94 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 515 ANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.||.+|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788888888888888877774
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=86.35 E-value=2 Score=24.55 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEK 176 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 176 (546)
.|...|..+-..|.+.|+.++|++.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677899999999999999999999986
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=86.15 E-value=3 Score=38.37 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+=+|-+++-...-.+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765568888888888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.43 E-value=2.5 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 491 SAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 491 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999999887654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.80 E-value=22 Score=29.77 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-----C
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-----G 290 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g 290 (546)
+.+|++|.+.|..--..+ ..+...+.+|..++. .++...|+..|..+-. -+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 356677777776654433 345667777765543 4688999999998876 46788888888888652 2
Q ss_pred C--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc---ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 291 D--MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 291 ~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
+ ..+|.+++.++-.+. +..+.+.|...++.-...... ....-...+..+.-.++.++|.++--++-+++ ++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence 3 678999999987654 666777777777632111111 11222334445555667777777777776653 35
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 009045 366 HIWANLANAYYLT----GDHRSSGKCLEKAAK 393 (546)
Q Consensus 366 ~~~~~l~~~~~~~----g~~~~A~~~~~~al~ 393 (546)
.+.-++.+.|..- .+-++|..+-.++.+
T Consensus 201 ~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 201 QACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred HHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 5555555555331 234455555554444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.79 E-value=2.9 Score=35.86 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=36.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
++.+.+.+++...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445555666666666666666666666666666666666666666666666666654
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=84.63 E-value=2.1 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhc---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAV---------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
+...|.+++.-+|+|..|++.++.. ++ .+-....++..|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999988753 22 233467889999999999999999999999874
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.47 E-value=45 Score=33.02 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=32.9
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------------cCChHHHHHHHHHHHH
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--------------------TGDHRSSGKCLEKVLM 539 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~ 539 (546)
|....++++|++.+..+++.+..+..+.-.+-.-+.. -.++..++.-|++.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 4455667777777777777777666665554444333 4456666666666554
|
|
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.42 E-value=25 Score=31.70 Aligned_cols=166 Identities=14% Similarity=0.064 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc--CCHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK--------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--GDMEQ 294 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~ 294 (546)
..|++.-...+..+|....+|...-.+... ..-++.-+..+..+++.+|.+...|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 456666666777778777777766555543 22356667788899999999999999888877655 66788
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH---
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL--- 371 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--- 371 (546)
-....++.+..++.|...|...-.++. .+.-.....++..-.++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~---------------~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLR---------------TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeee---------------cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHH
Confidence 888889999999998877754433331 01111133344555677778888899999988877
Q ss_pred HHHHHHcCC------hHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 372 ANAYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 372 ~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
-...+..|+ +++=+.+.-.++-.+|++..+|..+
T Consensus 194 ~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 194 IERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 333444554 3455666666777789988777644
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.32 E-value=2.4 Score=25.99 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
.+.++.+|..+|+.+.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999995
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=83.93 E-value=7 Score=27.31 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
.+...|.-+-..|++.+|+.+|+++++.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445555566667777766666666654
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=83.74 E-value=3.2 Score=23.74 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009045 510 AAHIWANLANAYYLTGDHRSSGKCLEK 536 (546)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (546)
+..+|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777788888888888888888765
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=83.71 E-value=19 Score=34.77 Aligned_cols=59 Identities=14% Similarity=-0.048 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHh-hcc---------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEEN-ELS---------KMEECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~-~l~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
....+..++.-.|+|..|++.... .+. ......+|.+|-+|+-+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888887765 111 22224577888888888888888888887763
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.66 E-value=9.1 Score=33.02 Aligned_cols=59 Identities=22% Similarity=0.126 Sum_probs=54.8
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+.+...+++...+.-++-.|.+......+-.++.-.|+|++|...++-+-++.|++..
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 37788999999999999999999999999999999999999999999999999998753
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=83.58 E-value=3.9 Score=22.55 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|+.+.|...|++++...|.+...|..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666655443
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=83.50 E-value=28 Score=33.76 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh--HHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC--DCIGNL--GIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 305 (546)
.....+.-++..++|..|...|..+...-|... ..+..+ |..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445567788899999999999999988533333 344444 44456788999999999998865
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.35 E-value=10 Score=34.22 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHH
Q 009045 462 AAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 462 ~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
.+|+..|.+.-. ..-......+|..|+..|++++|+.+|+.+....... ..++..+..|+...|+.+..+.+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555554222 2333455689999999999999999999997654322 566778899999999998877665
Q ss_pred HH
Q 009045 535 EK 536 (546)
Q Consensus 535 ~~ 536 (546)
=+
T Consensus 242 le 243 (247)
T PF11817_consen 242 LE 243 (247)
T ss_pred HH
Confidence 33
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.14 E-value=21 Score=36.83 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.-.++-..|....+|+.-++..+..-.+ |+. -+..+...+.+..+.++.+.+ +.|+-++|+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t------~~vve~~nv~f~YaFALNRRN--------r~GDRakAL~ 264 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDT------LKVVETHNVRFHYAFALNRRN--------RPGDRAKALN 264 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cch------hhhhccCceEEEeeehhcccC--------CCccHHHHHH
Confidence 5777788888888888888877777665543 321 112222222334444444443 3488899999
Q ss_pred HHHHHHhcC-cccHHHHHHHHHHHHH---------cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 230 KLKESMQSD-TRQAVVWNTLGLILLK---------SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 230 ~~~~al~~~-p~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
..-.+++.. |-.++.+...|++|-. .+..+.|+++|+++.+..|... .=.+++.++...|+
T Consensus 265 ~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 265 TVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhh
Confidence 988888754 4446677777777753 3567789999999999998643 23455555555553
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=82.77 E-value=9.7 Score=26.62 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
.+...+.-+...|++.+|+.. |.+|++.+.+++...|+++.-......+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~-------------------------Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITN-------------------------YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHH-------------------------HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 345555566666666666655 4567777777777888887654444444
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.77 E-value=2.3 Score=39.27 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+...
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34555788888889999998888888888888899999999999999999999999999999999887765544433
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=82.45 E-value=53 Score=32.36 Aligned_cols=113 Identities=14% Similarity=-0.048 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcc---ccccChhhHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSL---DKELEPEELEEILS 229 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~A~~ 229 (546)
....||.+++..|+|+-|...|+.+.+-.-.+ ..+..++.+....+.++...+.... .+-.-..-++.|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~ 283 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYY 283 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHH
Confidence 34568999999999999999999988754222 2233333333333333333332200 00011223456666
Q ss_pred HHHHHH----hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc
Q 009045 230 KLKESM----QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 271 (546)
Q Consensus 230 ~~~~al----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 271 (546)
.|.+.- .....-..+....+.++...|.+.+|...+-+....
T Consensus 284 ~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 284 TYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 666631 111122335556666777777777777766665544
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=81.42 E-value=39 Score=30.16 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=34.6
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCChHHHHHHHHHHHhc
Q 009045 338 GACLDQASAVNVAKECLLAALKADPK-AAHIWANLANAYYL-TGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~ 394 (546)
+.+..+.|+|++.+.++++++..++. +.+-...++.+|-. .|....+...+......
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 44455888888888888888888766 44555556666532 34445555555544443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.41 E-value=52 Score=31.53 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+..|+.+..+|...|+...-...+...+....=-. ...... ...+.+ +..|+..+.|+.|-.
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh----d~e~qa--vLiN~L-----------Lr~yL~n~lydqa~~ 230 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH----DEEGQA--VLINLL-----------LRNYLHNKLYDQADK 230 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC----cchhHH--HHHHHH-----------HHHHhhhHHHHHHHH
Confidence 367788899999999997777666666655421000 000000 000000 112466677888888
Q ss_pred HHHHHHh----cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC
Q 009045 230 KLKESMQ----SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN 275 (546)
Q Consensus 230 ~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 275 (546)
...+..- .+...+..++.+|.+..-+++|..|.++|.+++...|..
T Consensus 231 lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 231 LVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 7777651 111335567788999999999999999999999998874
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=80.21 E-value=51 Score=30.71 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=107.8
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------------hhHHHHHHHHHHHHhcccch
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ--------------------------PLKAVSSYEKAEEILLRCEA 186 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--------------------------~~~A~~~~~~al~~~p~~~~ 186 (546)
++++...-.-+..+-|..++++-.++.+.+...+ .+++...+.+++.... .
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~-p-- 288 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR-P-- 288 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC-C--
Confidence 3666666677788899999999888887765422 5567777777766521 0
Q ss_pred hccchhhHHH-HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 187 DIARPELLSL-VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265 (546)
Q Consensus 187 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 265 (546)
-|..+.. +...+..+. .-..-+|..-..+|+-.....|. +.+-.+.+.......-...++...
T Consensus 289 ---GPYqlqAAIaa~HA~a~------------~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~v 352 (415)
T COG4941 289 ---GPYQLQAAIAALHARAR------------RAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMV 352 (415)
T ss_pred ---ChHHHHHHHHHHHHhhc------------ccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHH
Confidence 1222111 111111111 12345677777777776666664 455556666666666667777777
Q ss_pred HhhHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 266 SSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 266 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+..... -......+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 353 e~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 353 EALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 666554 2244566778899999999999999999999999988776654433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 546 | ||||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-04 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-04 |
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 6e-23
Identities = 34/254 (13%), Positives = 80/254 (31%), Gaps = 21/254 (8%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
A G + + G+ +A ++K + + LV+ Q L
Sbjct: 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKV--LKSNPSEQEEKEAESQLVKADEMQRLR- 124
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ + + ++ L + ++ A + +K G + +IS L +
Sbjct: 125 -----SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ +N + + Y+Q GD E S ++ + DQ+H +Y +
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN---- 235
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGDHRS 383
L + A + +K +P A + + +
Sbjct: 236 -----KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290
Query: 384 SGKCLEKAAKLEPN 397
+ + + ++EP+
Sbjct: 291 AIRICSEVLQMEPD 304
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 45/325 (13%), Positives = 101/325 (31%), Gaps = 56/325 (17%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
+ + + L G+ ++++ L+ ++A+ + G + G ++++ F+
Sbjct: 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 96
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG-------ACLDQASAVNV----- 349
++ + + + L+ L + +G LD+ V V
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 350 ----------------AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393
A L AA K + ++ YY GDH S + + K
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453
L+ + ++K + E E+L G + + ++ EP +A +
Sbjct: 217 LDQDHKRCFAHYK--QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274
Query: 454 VQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513
+ F ++ K E A L+ +P +
Sbjct: 275 ----KERICHCF----SKDEKPVE------------------AIRICSEVLQMEPDNVNA 308
Query: 514 WANLANAYYLTGDHRSSGKCLEKVL 538
+ A AY + + + + E
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 28/181 (15%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
LG LL +G+L ++S + + DP+N + G + + +I
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 305 KDQNHPAALINYAALLLCK---------YGSVL------AGAGANTGEGACLDQASAVNV 349
+ AA + LLL + + VL + D+ +
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
Query: 350 -------------AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396
A L L+ A + A + G+ R + L+ A+KL+
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185
Query: 397 N 397
+
Sbjct: 186 D 186
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 34/266 (12%), Positives = 58/266 (21%), Gaps = 66/266 (24%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVLAGAGANTGEG 338
LG +G + + F + D ++ A A + + K +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA------------ 55
Query: 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398
A L + + G + +K K P+
Sbjct: 56 -----------ALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS- 103
Query: 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTH 458
++ E S A
Sbjct: 104 ----EQEEKEAESQLVKADEMQRLRSQ------------------------ALDAFDGAD 135
Query: 459 HEVAAAFETEENELSKMEECAGAGESAFLDQASA------VNVAKECLLAALKADPKAAH 512
+ A L K+ E +A A L AA K
Sbjct: 136 YTAA------ITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189
Query: 513 IWANLANAYYLTGDHRSSGKCLEKVL 538
+ ++ YY GDH S + + L
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECL 215
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 57/441 (12%), Positives = 121/441 (27%), Gaps = 74/441 (16%)
Query: 130 TSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI--------- 180
+ L+ + A +L G +Y L +A Y++A +
Sbjct: 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238
Query: 181 ------LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234
LL + + L+ S L+K +EL L S
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-S 297
Query: 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294
+ + + + L R +++ + +L +DP N D + +SG+ +
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357
Query: 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354
DL+ + + G + ++ A+
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAV---------------------GIYYLCVNKISEARRYF 396
Query: 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----R 409
+ DP+ W A+++ + G+H + AA+L + +
Sbjct: 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456
Query: 410 IKDAERSQE------PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAA 463
I A + + L NE+ + +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLL--NELGVVAFN------------------KSDMQTAIN 496
Query: 464 AFETEENELSKMEECAGAGESAFLDQASA------VNVAKECLLAALKADPKAAHIWANL 517
F+ + K + + + + A + A + L L A++ +
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Query: 518 ANAYYLTGDHRSSGKCLEKVL 538
A Y + L + L
Sbjct: 557 ALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 5e-16
Identities = 40/266 (15%), Positives = 86/266 (32%), Gaps = 42/266 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A +G+ Y + + +A + K+ + + A
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQFG-----------PAWIGF- 413
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+S E E ++ +S + + + + LG+ ++ G + + L S
Sbjct: 414 ---A-HSFAIE---GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
A+ + + LG+ F DM+ + FQ+ +L + + +AA
Sbjct: 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL---- 522
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
G + + A + L L A++ +A Y +
Sbjct: 523 ----------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH 572
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDA 413
L ++ + PN +A +K A
Sbjct: 573 LHESLAISPN-----EIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 8e-15
Identities = 53/419 (12%), Positives = 107/419 (25%), Gaps = 90/419 (21%)
Query: 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
+ N + F L +Y G Y +A+ +L + + L A CL+
Sbjct: 113 ITGNPNDAFWLAQVYCCTGD-------YARAKCLLTKEDLYNRSSACRYL----AAFCLV 161
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTR---QAVVWNTLGLILLKSGRLQSSIS 263
+L+ E + + + D +A + G + +
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
L VD + L + + D E + + A L + L L K
Sbjct: 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281
Query: 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 383
L +A E L+++ K++ + A+ ++
Sbjct: 282 TSH-----------EDELRRA-------EDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323
Query: 384 SGKCLEKAAKLEPN---CMSTRYAVAVSR------IKDAER--SQEPTEQLSWAGNEMAS 432
K +++P A + + P + ++W +
Sbjct: 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW--LAVGI 381
Query: 433 ILRE-GDP----------VQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479
++P AW GFA + + E
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA-----------------HSFAIEGE-- 422
Query: 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
DQ A A + + L + G+ + + L+
Sbjct: 423 -------HDQ------AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 51/235 (21%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A + G+ +A+S+Y A R P L L H
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTA----ARLFQGTHLP-YLFLGMQHMQL---- 454
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI----- 262
+ L+ S ++ N LG++ +Q++I
Sbjct: 455 --------------GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500
Query: 263 --SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320
++ + + NLG AY + + + +L N A +
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560
Query: 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375
L + A L +L P L A
Sbjct: 561 L------------HKKI---PGLA------ITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 9e-10
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 203
AR + LG+ + +LG L A + + + + +
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---------FQYD---PLLLNEL 481
Query: 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263
++ + D + + + L +K++ ++ A W LG K ++I
Sbjct: 482 GVVAFNKSD--MQTAIN--HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
L+ L + N+ + + + Y + + + N A
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 40/297 (13%), Positives = 77/297 (25%), Gaps = 23/297 (7%)
Query: 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307
L + +G + +L+ + ++ C + D + + +
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSS-ACRYLAAFCLVKLYDWQGALNLLGE-----T 176
Query: 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367
N A LL + G + A G S + AKEC AL D K
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236
Query: 368 WANLANAYYLTGDHR---SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLS 424
+ L + + LT D +K + + + Y + +++ + + + LS
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 425 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGA--G 482
G + A L
Sbjct: 297 SI---------NGLE---KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 483 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539
A L ++ N + P+ A W + Y + + K
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 32/287 (11%), Positives = 85/287 (29%), Gaps = 50/287 (17%)
Query: 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312
L + + + V +L + N D L Y +GD ++ L +++
Sbjct: 95 LMQQQYKCAAFVGEKVLDITGNPND-AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 313 LINYAALLLC-KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
+ L+ + A G A + L+ +A+ +
Sbjct: 154 YLAAFCLVKLYDWQG------ALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS-MCYLR 206
Query: 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 431
Y + + +C ++A ++ C + + + A+ + +L+++
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYS----- 261
Query: 432 SILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQAS 491
+ A+ ++ + + + E+EL
Sbjct: 262 --------TYSKEDAAFL------RSLYMLKLNKTSHEDELR------------------ 289
Query: 492 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
E L+++ K++ + A+ ++ K+L
Sbjct: 290 ----RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-21
Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 27/257 (10%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-LLRCEADIARPELLSL--VQIHHAQC 204
A G + + G+ +A ++K + E A+ +L+ +Q +Q
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
L SGD ++ L + ++ A + +K G + +IS
Sbjct: 151 LNAFGSGD-----------YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324
L + + +N + + Y+Q GD E S ++ + DQ+H +Y +
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN- 258
Query: 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA----NLANAYYLTGD 380
L + A + +K +P A + + +
Sbjct: 259 --------KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310
Query: 381 HRSSGKCLEKAAKLEPN 397
+ + + ++EP+
Sbjct: 311 PVEAIRVCSEVLQMEPD 327
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 58/416 (13%), Positives = 123/416 (29%), Gaps = 90/416 (21%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210
H H G+ ++++ EK L L + A
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEK----------------HLELGKKLLAA------- 39
Query: 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270
+L + LS+ ++ D + + + L G+ ++++ L+ ++
Sbjct: 40 -----------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330
+ + G + G ++++ F+ ++ + + + L+ L
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 331 AGANTGEG-------ACLDQASAVNV---------------------AKECLLAALKADP 362
N A LD+ V V A L AA K
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422
+ ++ YY GDH S + + KL+ + ++K + E E+
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK--QVKKLNKLIESAEE 266
Query: 423 LSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAG 482
L G + + ++ EP IA ++ + F ++ K E
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIA----EYTVRSKERICHCF----SKDEKPVE----- 313
Query: 483 ESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
A L+ +P + + A AY + + + + E
Sbjct: 314 -------------AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 42/327 (12%), Positives = 94/327 (28%), Gaps = 44/327 (13%)
Query: 68 DSNHSSSHHDKGSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSG 127
+ + + + ++ S EM + G + I+ +D LE V
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF-LDKILEVCVW------- 175
Query: 128 LGTSSSSREEKGLVHVARKM---------------PKNAHAHFLLGLMYQRLGQPLKAVS 172
+ RE + + N A + + +Y +LG ++S
Sbjct: 176 ---DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232
Query: 173 SYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232
+ ++ + H+ Q S ++ + + SK +
Sbjct: 233 EVRECLKL---------DQDH-KRCFAHYKQVKKLNKL-IESAEELIRDGRYTDATSKYE 281
Query: 233 ESMQSDTRQAVVW----NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288
M+++ A + K + +I V S +L ++P+N + + + AY
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341
Query: 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 348
+++ + ++ ++N S G A
Sbjct: 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILG---VKRNAKKQE 398
Query: 349 VAKECLLAALKADPKAAHIWANLANAY 375
+ K AL+ P A
Sbjct: 399 IIKAYRKLALQWHPDNFQNEEEKKKAE 425
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 71/391 (18%), Positives = 129/391 (32%), Gaps = 88/391 (22%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P A A+ LG +Y+ GQ +A+ Y A + +P+ + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---------KPDF---IDGYINLAAAL 111
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
++GD +E + ++Q + V + LG +L GRL+ + +
Sbjct: 112 VAAGD-----------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ PN NLG + G++ + F+ + D N A IN +L
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL------- 213
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
D+ A L AL P A + NLA YY G +
Sbjct: 214 -----KEARI---FDR------AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447
+A +L+P+ +A + K+ E + + A +++ P A
Sbjct: 260 YRRAIELQPHFPDAYCNLANAL-KEKGSVAEAEDCYNTA-------------LRLCPTHA 305
Query: 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507
+ + +A E +EE A AL+
Sbjct: 306 DS--------LNNLANIK----REQGNIEE------------------AVRLYRKALEVF 335
Query: 508 PKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
P+ A +NLA+ G + + ++ +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 65/381 (17%), Positives = 117/381 (30%), Gaps = 92/381 (24%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 205
P + L G AV +Y A + P+ L + L
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---------NPD---LYCVRSDLGNLL 145
Query: 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
K L LEE + +++++ AV W+ LG + G + +I
Sbjct: 146 -----------KAL--GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
+ +DPN D NLG ++ +++ + + NH N A +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY----- 247
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385
G +D A + A++ P + NLANA G +
Sbjct: 248 -------YEQGL---IDL------AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 386 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445
C A +L P + +A + ++ +E A +++ P
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIK-REQGNIEEAVRLYRKA-------------LEVFPE 337
Query: 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 505
A A H +A+ + + K++E A A++
Sbjct: 338 FAAA--------HSNLASVLQ----QQGKLQE------------------ALMHYKEAIR 367
Query: 506 ADPKAAHIWANLANAYYLTGD 526
P A ++N+ N D
Sbjct: 368 ISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 53/338 (15%), Positives = 103/338 (30%), Gaps = 75/338 (22%)
Query: 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 282
+ E + + + V L I + RL S + + +P + NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342
G Y + G ++++ + ++ + + IN AA L G+ ++
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL------------VAAGD---ME 118
Query: 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402
A + ++AL+ +P + ++L N G + C KA + +PN
Sbjct: 119 G------AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 403 YAVAVS-----RIKDAERS------QEPTEQLSWAGNEMASILRE-GDP----------V 440
+ I A +P A + ++L+E +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECL 500
+ P A H +A + E ++ A +
Sbjct: 231 SLSPNHAVV--------HGNLACVY----YEQGLIDL------------------AIDTY 260
Query: 501 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
A++ P + NLANA G + C L
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 75/316 (23%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
L ++G +++ L +P+N + L +FQ +++SA I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
++ A N + G+ L + A E AL+ P
Sbjct: 62 QNPLLAEAYSNLGNVY------------KERGQ---LQE------AIEHYRHALRLKPDF 100
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERSQE- 418
+ NLA A GD + + A + P+ R + R+++A+
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 419 -----PTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVA 462
P + A + + + G+ V ++P A + +
Sbjct: 161 AIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA--------YINLG 210
Query: 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 522
E + A L AL P A + NLA YY
Sbjct: 211 NVL----KEARIFDR------------------AVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 523 LTGDHRSSGKCLEKVL 538
G + + +
Sbjct: 249 EQGLIDLAIDTYRRAI 264
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 2e-19
Identities = 51/435 (11%), Positives = 121/435 (27%), Gaps = 69/435 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLS----LVQIHHAQ 203
A LL + GQ A+ KAEE++ + AD A L +++
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263
D ++ ++++ + K + ++ + + + + +
Sbjct: 108 --------GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDM---EQSAKCFQDLILKDQNHPAALINYAALL 320
L P N + L IA ++ + + + + I + ++ + A L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380
++ ++ + AL+ P + + A Y +
Sbjct: 220 -----------------HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262
Query: 381 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG--- 437
+ + L+KA + PN + + E + ++ ++
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 438 --DPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF------L 487
+ + A++ + A + E SK L
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382
Query: 488 DQASAVNVAKECLLAALKADPKA------------------------AHIWANLANAYYL 523
Q + A + +K + K+ + LA L
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 524 TGDHRSSGKCLEKVL 538
+ + + E+ L
Sbjct: 443 NEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 3e-17
Identities = 56/362 (15%), Positives = 120/362 (33%), Gaps = 59/362 (16%)
Query: 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL------- 265
N ++ E ++ E+ + E Q+ +A + N L + G+ ++++ L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTE-FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 266 --SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
+ + GN Y+ G + + + + + L C+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD--- 380
G G N ++ AK C AL+ PK + LA A Y +
Sbjct: 142 EGWTRLKCGGN-----QNER------AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 381 HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE-------------QLSWAG 427
+++ L +A +L P+ + +A+ K E +E E ++
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250
Query: 428 NEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME 476
A R +P ++ P A+ H ++ + + ++ +
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL--------HCQIGCCYRAKVFQVMNLR 302
Query: 477 ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536
E G+ L+ + A L A +A+ + + LA+ + L + + +K
Sbjct: 303 ENGMYGKRKLLE---LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359
Query: 537 VL 538
Sbjct: 360 EF 361
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 3e-15
Identities = 30/290 (10%), Positives = 81/290 (27%), Gaps = 40/290 (13%)
Query: 142 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 201
H + ++ +Y +G+ +K + + + P + ++
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC----EKFSSPYRIESPELDC 140
Query: 202 AQCLLPESSGDNSLDK---------ELEPE-------------------ELEEILSKLKE 233
+ G N ++ E +P+ + + L++
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200
Query: 234 SMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 289
+++ + + L L L K ++ L P D + + Y +
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Query: 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA-SAVN 348
+ +++ + + + N+ C V + +
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIG---CCYRAKVFQVMNLRENGMYGKRKLLELIG 317
Query: 349 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398
A L A +A+ + + LA+ + L + + +K E
Sbjct: 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 2e-10
Identities = 33/265 (12%), Positives = 64/265 (24%), Gaps = 55/265 (20%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204
K P Y+R +P KA+ +KA E P +H
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNN---AYLHC--- 285
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
G K + L E K + A ++
Sbjct: 286 ----QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA-------------------VAH 322
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324
L + N L + + E++ FQ K+ A + + +Y
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH-----LRY 377
Query: 325 GSVLAGAGANTGEG-ACLDQA-----------SAVNVAKECLLAALKADPKAAHIWANLA 372
G+ + + + ++ L + + LA
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437
Query: 373 NAYYLTGDHRSSGKCLEKAAKLEPN 397
L + + + E+ +
Sbjct: 438 FLQELNEKMQQADEDSERGLESGSL 462
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 45/176 (25%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+L ++ Q +A ++K
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKE------------------------------ 360
Query: 208 ESSGDNSLDKELEPEELEEI---LSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS 263
KEL P + + + +A+ G+ I KS +
Sbjct: 361 -------FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413
Query: 264 VLSSL----LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
L + L+ + + + + L + M+Q+ + + + P+A
Sbjct: 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 3e-19
Identities = 30/249 (12%), Positives = 63/249 (25%), Gaps = 61/249 (24%)
Query: 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 208
++ GQ +AVS + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQT------------------------------- 30
Query: 209 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSL 268
L + E + ++ + + L L K+ + L
Sbjct: 31 --------IALNIDRTE--MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80
Query: 269 LAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328
L PNN DC+ G + + + ++ ++ + ++ AA I
Sbjct: 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY------- 133
Query: 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388
T E ++ E L + K + + T + + L
Sbjct: 134 -----LTAE---QEKK-----KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
Query: 389 EKAAKLEPN 397
+K P+
Sbjct: 181 QKVILRFPS 189
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 5/138 (3%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
A ++G Q+ F+ I + + + + T
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK-----NSEISSKLATELALA 63
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
+ + A L+ P A G + + + EK +LE + ++
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 401 TRYAVAVSRIKDAERSQE 418
+ AE+ ++
Sbjct: 124 ANIFLGNYYYLTAEQEKK 141
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-07
Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P N M GQ A+ YEK ++ + L+ A L
Sbjct: 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---------EADNLA------ANIFL- 128
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
G N E E ++ L + + S T+ GL L + R + + + L
Sbjct: 129 ---G-NYYYLTAEQE--KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQ 294
++ P+ + L ++ +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 20/175 (11%), Positives = 52/175 (29%), Gaps = 32/175 (18%)
Query: 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQ 198
V + ++ L L Y++ KA Y++ + P L + +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---------APNNVDCLEACAE 96
Query: 199 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-R 257
+ + + ++ L ++ +Q + LG + +
Sbjct: 97 MQVCR------------------GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138
Query: 258 LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312
+ + L+ G++ + E++ Q +IL+ + A
Sbjct: 139 EKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQ 193
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 27/193 (13%)
Query: 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQ 422
++ +A G + + + L + Y V + +E
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV---------DKNSEI 52
Query: 423 LSWAGNEMASILRE-GDP----------VQIEP--PIAWAGFAAVQKTHHEVAAAFETEE 469
S E+A ++ + +Q P A +Q + A E
Sbjct: 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 470 NELSKMEECAGA----GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525
L + A G + + A E L + K + + T
Sbjct: 113 KILQLEADNLAANIFLG-NYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171
Query: 526 DHRSSGKCLEKVL 538
+ + L+KV+
Sbjct: 172 RYEKARNSLQKVI 184
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 7e-19
Identities = 44/293 (15%), Positives = 84/293 (28%), Gaps = 49/293 (16%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
K A + G+ PL A +KA E+ R + I ++
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIM------------- 280
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ + E + ++++ D+ + V+ G + +
Sbjct: 281 -----------ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK---- 323
+DP N L ++ + F + K P +A +L K
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 324 -----YGSVLA----GAGANTGEGACLDQASAVNV---------AKECLLAALKADPKAA 365
Y + G G + +A+ + A L A K DP++
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449
Query: 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418
LA D + E++A L A+ +A + Q+
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---FAEAAKVQQ 499
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 55/452 (12%), Positives = 112/452 (24%), Gaps = 106/452 (23%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKA---------------------------EEI 180
P + + LG+ A+ +E
Sbjct: 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEK 129
Query: 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 240
+ A P LS + S+ + E + ES ++D
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 241 QAVVWNTLGLILLKS------------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288
+ L +S + + + + + + GI F
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN 348
D + + + I + I A ++ + + +
Sbjct: 250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA------------DRND---STEY---- 289
Query: 349 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408
ALK D + ++ + ++ ++ +GK +KA +L+P + +A
Sbjct: 290 --YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 409 R---------IKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEP--PI 446
++ + N A IL + D +++E
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407
Query: 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506
+ G A + A T + E A L A K
Sbjct: 408 IYVGIAPLVG-----KATLLTRNPTVENFIE------------------ATNLLEKASKL 444
Query: 507 DPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
DP++ LA D + E+
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 35/318 (11%), Positives = 90/318 (28%), Gaps = 46/318 (14%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
V ++ L + G L+ + + + L + P+ + A G +
Sbjct: 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
L L + A++ L K + +D A+A A + D
Sbjct: 99 LSLNGDFNDASIEPMLERNLNKQAM-----SKLKEKFGDIDTATATPTELSTQPAKERKD 153
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
+ +++ + +++ + + M+ + + +++ E
Sbjct: 154 KQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213
Query: 422 QLSWAGNEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVA-----AAFETEEN-- 470
+ A + + + +++ +A + G K A A E
Sbjct: 214 KA--ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271
Query: 471 ----------ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520
+ + E ALK D + ++ +
Sbjct: 272 SYIYMALIMADRNDSTE------------------YYNYFDKALKLDSNNSSVYYHRGQM 313
Query: 521 YYLTGDHRSSGKCLEKVL 538
++ ++ +GK +K
Sbjct: 314 NFILQNYDQAGKDFDKAK 331
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 33/284 (11%), Positives = 73/284 (25%), Gaps = 40/284 (14%)
Query: 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 332
+ + G +F++ + + K + + ++ N
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNL---------------- 45
Query: 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392
AC + E AL+ P + + A+A G + L +
Sbjct: 46 -----SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100
Query: 393 -KLEPNCMSTRYAV-----------AVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440
+ N S + + D + + +LS + +E P
Sbjct: 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160
Query: 441 Q------IEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVN 494
FA +++ N + E + +F A
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220
Query: 495 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
+ K K A + +L D + + ++K +
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 45/421 (10%), Positives = 108/421 (25%), Gaps = 91/421 (21%)
Query: 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209
+ + L Y +G K V KA E+ +P+ +++ LL
Sbjct: 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALEL---------KPD--------YSKVLL--R 78
Query: 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
++ + + + LS L + + L +L+ + +
Sbjct: 79 RA-SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137
Query: 270 AVDPNNCDCIGNLGI-------------AYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316
A ++F E + + + D+ L N
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376
Y + + + A + K K A + +
Sbjct: 198 YKRSPESY---------DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
Query: 377 LTGDHRSSGKCLEKAAKLEPNCMS-TRYAVAVSR-------IKDAERSQEPTEQLSWAGN 428
L D + + ++KA +L P S A+ ++ +++ + S
Sbjct: 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308
Query: 429 EMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477
+ + +++P + + ++A +K ++
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFP--------YIQLACLA----YRENKFDD 356
Query: 478 CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537
+ A + P+A + A D + K +
Sbjct: 357 ------------------CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398
Query: 538 L 538
+
Sbjct: 399 I 399
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 9e-19
Identities = 33/287 (11%), Positives = 75/287 (26%), Gaps = 28/287 (9%)
Query: 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209
+++ L L + ++KA ++ PE H Q
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDL---------NPEY-PPTYYHRGQMY---- 320
Query: 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
L+ + + +++ + + L +L K G+ S + +
Sbjct: 321 -------FILQ--DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329
P + GD + + K + ++ + L+
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI-----GKAT 426
Query: 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389
+ + N A + L A + DP++ LA + + E
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486
Query: 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436
+A L A + ++ +S + R
Sbjct: 487 DSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRA 533
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 55/441 (12%), Positives = 115/441 (26%), Gaps = 91/441 (20%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE--------------EILLRCEADIARPEL 193
P ++ A + LG A+ E L +A E
Sbjct: 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNEN 149
Query: 194 L------------SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQ 241
L S + + +S++ + +LS + + S T
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT-D 208
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
L+ + S +S + + N + GI +F ++ +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL-Q 267
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ P + I A L K + + A+ +
Sbjct: 268 ESINLHPTPNSYIFLALTLADK------------EN---SQEF------FKFFQKAVDLN 306
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR---------IKD 412
P+ + + Y++ D++++ + +KA L P + +A
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 413 AERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWA----GFAAVQKT 457
++ L A IL + GD ++E G + T
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426
Query: 458 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517
++ + + + K A + L A + DP++ L
Sbjct: 427 ILARQSSQDPTQLDEEKFNA------------------AIKLLTKACELDPRSEQAKIGL 468
Query: 518 ANAYYLTGDHRSSGKCLEKVL 538
A + + E
Sbjct: 469 AQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 35/334 (10%), Positives = 91/334 (27%), Gaps = 54/334 (16%)
Query: 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 282
E + + +++ D + V ++ + + +G L+ I + L + P++ +
Sbjct: 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGE---GA 339
A G+ + L L A++ L K + + E
Sbjct: 100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159
Query: 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEKAAKLEP 396
L +++ + L+ + A A L + ++ + A L
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219
Query: 397 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEP- 444
Y + E + A + + + P
Sbjct: 220 KSTD-MYHSL---LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 445 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAAL 504
P ++ A + +E + A+
Sbjct: 276 PNSYIFLALTLA--------------DKENSQE------------------FFKFFQKAV 303
Query: 505 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
+P+ + + Y++ D++++ + +K
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 40/275 (14%), Positives = 78/275 (28%), Gaps = 43/275 (15%)
Query: 144 ARKMPKNAHAHFLLGLMYQRL-GQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQ 198
++ +P N G+ L + S+Y+ A +L + L++
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217
Query: 199 IHHAQCLLPESSGDNSLDKELEPE----------------ELEEILSKLKESMQSDTRQA 242
+ + + N++D L L + L+ES+
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P 276
Query: 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302
+ L L L Q + ++P + G YF D + + + FQ
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362
+ + I A LL G+ + ++ P
Sbjct: 337 QSLNPENVYPYIQLACLL------------YKQGK---FTE------SEAFFNETKLKFP 375
Query: 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ A GD ++ K + A +LE
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 39/279 (13%), Positives = 70/279 (25%), Gaps = 53/279 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-------LLRC-----------EADIA 189
P + + Y G K + KA EI LLR +A
Sbjct: 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115
Query: 190 RPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLG 249
L A N ++ E L + + + + S+T + + G
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS---LASFFG 172
Query: 250 LI--------LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QSGDMEQSAKCF 299
+ + S ++ ++LS L + D + +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359
+N AL L A+ L ++
Sbjct: 233 TVDDPLRENAALALCYTGIFHF------------LKNN---LLD------AQVLLQESIN 271
Query: 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398
P + + LA + + K +KA L P
Sbjct: 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 41/234 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+N + + L + + G+ ++ + + + + +I +
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNET----KLKFPTLPEV-PTFFAEILTDRGDFD 395
Query: 208 ESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
+ D LE + + + + ++ L + ++I +L
Sbjct: 396 TA--IKQYDIAKRLEEVQEKIHVGIG--PLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
+ +DP + L Q ++++ + F+D + + L
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT-------- 503
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379
A A + L+ADP + Y G
Sbjct: 504 --FAEAAK--------------------IQKRLRADPIISAKMELTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 28/283 (9%), Positives = 65/283 (22%), Gaps = 62/283 (21%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 205
A G + +A+ Y+ A E+ P + + C
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---------DPN---EPVFYSNISACY 69
Query: 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
+LE+++ ++++ + G ++ L
Sbjct: 70 -----------IST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
S L + G + +Q+ K + + KD+ + ++ L +G
Sbjct: 117 SVLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172
Query: 326 SV-------------------------------LAGAGANTGEGACLDQASAVNVAKECL 354
G +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
AA ++L + + L+++ L P
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 45/395 (11%), Positives = 95/395 (24%), Gaps = 62/395 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A Q L + + +A + P+ V +
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGL---------TPQQ---VVAIASHDGGK 116
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
++ ++ +L L ++ Q V + +Q+ + VL
Sbjct: 117 QALET-----------VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ P I + G +++ A+ +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN----------- 214
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
G V L A P+ A+ +
Sbjct: 215 ----------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--P 445
L +A L P VA++ +++ E ++L + + + + P
Sbjct: 265 LCQAHGLTPQ-----QVVAIASNSGGKQALETVQRL------LPVLCQ---AHGLTPQQV 310
Query: 446 IAWA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAA 503
+A A G + + + L+ + A A V L A
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 504 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
P+ A+ + L +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-16
Identities = 45/393 (11%), Positives = 90/393 (22%), Gaps = 92/393 (23%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A Q L + +A L E +A + S A
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQA--HGLTPEQVVA---IASNGGGKQAL---- 187
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
E ++ +L L ++ +Q V + G +Q + VL
Sbjct: 188 --------------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ P I + G +++ A+ +
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN----------- 282
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
V L A P+ A+ +
Sbjct: 283 ----------SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--P 445
L +A L P VA++ +++ E ++L + + + + P
Sbjct: 333 LCQAHGLTPQ-----QVVAIASHDGGKQALETVQRL------LPVLCQ---AHGLTPEQV 378
Query: 446 IAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 505
+A A ++ L ++ L A
Sbjct: 379 VAIASNGGGKQ--------------ALETVQR------------------LLPVLCQAHG 406
Query: 506 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
P+ A+ + L +
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAH 439
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 49/399 (12%), Positives = 97/399 (24%), Gaps = 57/399 (14%)
Query: 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ 203
R P LL + + ++AV ++ A L PE
Sbjct: 26 LRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNA----LTGAPLNLTPE--------QVV 73
Query: 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263
+ G +L E ++ +L L ++ +Q V + +Q +
Sbjct: 74 AIASHDGGKQAL------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
VL + P I + ++ A+ +
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN------- 180
Query: 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 383
G V L A P+ A+ +
Sbjct: 181 --------------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
Query: 384 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 443
L +A L P VA++ +++ E ++L + + + +
Sbjct: 227 LLPVLCQAHGLTPQ-----QVVAIASNGGGKQALETVQRL------LPVLCQA---HGLT 272
Query: 444 P--PIAWA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKEC 499
P +A A + + + L+ + A A V
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 500 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
L A P+ A+ + L +
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 371
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 8e-14
Identities = 34/275 (12%), Positives = 64/275 (23%), Gaps = 57/275 (20%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQIHHAQ 203
P+ A G Q L + + +A + P+ + S A
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGL---------TPQQVVAIASNSGGKQAL 289
Query: 204 CLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSIS 263
E ++ +L L ++ +Q V + G +Q +
Sbjct: 290 ------------------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
VL + P I + +++ A+ +
Sbjct: 332 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN------- 384
Query: 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 383
G V L A P+ A+ +
Sbjct: 385 --------------GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430
Query: 384 SGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418
L +A L P VA++ + E
Sbjct: 431 LLPVLCQAHGLTPQ-----QVVAIASNGGGRPALE 460
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 28/267 (10%), Positives = 62/267 (23%), Gaps = 48/267 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A Q L + + +A + P+ + +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGL---------TPQQ-VVAIASNGGGK-- 320
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ LE ++ +L L ++ +Q V + +Q + VL
Sbjct: 321 ---------QALE--TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ P I + G +++ A+ ++
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH----------- 418
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
V L A P+ A+ +
Sbjct: 419 ----------DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAE 414
+ A N + VA++ +
Sbjct: 469 PDPALAALTN----DHLVALACLGGRP 491
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 29/283 (10%), Positives = 57/283 (20%), Gaps = 65/283 (22%)
Query: 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
L + + L +D I G + A+ +
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77
Query: 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375
+ V L A P+ A+
Sbjct: 78 H---------------------DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116
Query: 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR 435
+ L +A L P VA++ +++ E + L + +
Sbjct: 117 QALETVQRLLPVLCQAHGLTPE-----QVVAIASHDGGKQALETVQALLPVLCQAHGL-- 169
Query: 436 EGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV 495
P E +A A ++ L ++
Sbjct: 170 --TP---EQVVAIASNGGGKQ--------------ALETVQR------------------ 192
Query: 496 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
L A P+ A+ + L +
Sbjct: 193 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 235
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 30/272 (11%), Positives = 69/272 (25%), Gaps = 44/272 (16%)
Query: 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209
N F + +A+ + K E P + +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRR------------ 43
Query: 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
+ + + ++ + + + ++ + G IL+K G+ +I + +
Sbjct: 44 -AVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101
Query: 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK------ 323
D D G +G ++ G+ + + + I P
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
Query: 324 ---YGSVL------AGAGANTGEG-ACLDQASAVNVAKECLLAALKADPKAAHI------ 367
+ VL A D + +AK ++
Sbjct: 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221
Query: 368 --WANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+A Y + D + + L+P
Sbjct: 222 EANEYIAYYYTINRDKVKADAAWKNILALDPT 253
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-14
Identities = 35/302 (11%), Positives = 75/302 (24%), Gaps = 53/302 (17%)
Query: 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ---SAKCFQ 300
V L K+ +I V + L A N+ + Y++ + + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 301 DLILKDQNHPAALINYAALL--LCKYGSVLAG-----------AGANTGEGACLDQASAV 347
+ + A Y +L + + G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124
Query: 348 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407
+A + + ++ ++ L AYY ++ + K +L+PN +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-----IYIGY 179
Query: 408 SRIKDAERSQEPTEQLSWAGN--EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAF 465
A +Q+P + A E + + + + A + +A +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEA--------NEYIAYYY 231
Query: 466 ETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525
+ A L DP L
Sbjct: 232 T----INRDKVK------------------ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
Query: 526 DH 527
H
Sbjct: 270 HH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-11
Identities = 24/239 (10%), Positives = 48/239 (20%), Gaps = 43/239 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH--AQCL 205
+ G + + GQ A+ Y+ A + + ++
Sbjct: 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR---------DTT---RLDMYGQIGSYF 118
Query: 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
+ +++ ++ T V+ LG + + S
Sbjct: 119 -----------YNK--GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 266 SSLLAVDPNNCDCIGNLGIAYF---QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322
+L + PN A + ++ LI A +
Sbjct: 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381
A L DP L H
Sbjct: 226 YIAYYYTINRDKVK-------------ADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 39/333 (11%), Positives = 87/333 (26%), Gaps = 59/333 (17%)
Query: 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284
+ + + ES+ V +L + + + S ++ DP + C+
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 285 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQA 344
+ + L+ ++P + L G +
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV--------------GHKNEH- 109
Query: 345 SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYA 404
A+ L A + W +++ + +H + AA+L C
Sbjct: 110 -----ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164
Query: 405 VAV-----SRIKDAERSQE------PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453
+ + + K AER P + +E+ + +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVM--HEVGVVAFQ----------------- 205
Query: 454 VQKTHHEVAAAFET--EENELSKMEECAGAGESAFLDQASA------VNVAKECLLAALK 505
F E+ + E E + A + AL
Sbjct: 206 -NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264
Query: 506 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
P+ A ++ + + L G+ ++ L
Sbjct: 265 LIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 47/280 (16%)
Query: 140 LVHVARKM----PKNAHAHFLLGLMYQRLGQPL-KAVSSYEKAEEILLRCEADIARPELL 194
L +++ K+ P N + F +G Y +G A KA +
Sbjct: 75 LFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---------EKTY- 124
Query: 195 SLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK 254
A G +S E E ++ ++ + Q + +GL
Sbjct: 125 -----GPAWIAY----G-HSFAVE---SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171
Query: 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD-LILKDQNHPAAL 313
+ + + S L++ P + + +G+ FQ+G+ + + K F D L
Sbjct: 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373
++ LL G V + A + AL P+ A ++ +
Sbjct: 232 VDKWEPLLNNLGHVCRKLK-------KYAE------ALDYHRQALVLIPQNASTYSAIGY 278
Query: 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 413
+ L G+ ++ A L + +V+ +
Sbjct: 279 IHSLMGNFENAVDYFHTALGLRRD-----DTFSVTMLGHC 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 17/150 (11%), Positives = 53/150 (35%), Gaps = 14/150 (9%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P++ +G++ + G+ A + A E + ++ + L +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL-LNNLGHVC-- 246
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
++L+ + E L ++++ + A ++ +G I G ++++ +
Sbjct: 247 ---------RKLK--KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297
L + ++ + LG ++
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 29/268 (10%), Positives = 65/268 (24%), Gaps = 45/268 (16%)
Query: 131 SSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIAR 190
S + E + + +N L + E D
Sbjct: 2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK------DPFH 55
Query: 191 PELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGL 250
L + H L EL + E+ + + V W +G
Sbjct: 56 ASCLPV----HIGTL-----------VEL--NKANELFYLSHKLVDLYPSNPVSWFAVGC 98
Query: 251 ILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309
L G + + LS ++ G ++ + +Q+ + +
Sbjct: 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158
Query: 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369
++ G + +A+ AL P+ +
Sbjct: 159 HLPMLYI---------------------GLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197
Query: 370 NLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ + G+ +++ K A +
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKA 225
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 20/243 (8%), Positives = 57/243 (23%), Gaps = 53/243 (21%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
A G + + +A+++Y A + P +L + +
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTA----AQLMKGCHLP-MLYIGLEYGLT---- 172
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL-- 265
+ +++ V + +G++ ++G +++
Sbjct: 173 --------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218
Query: 266 -------SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318
+ NLG + ++ + ++ + +
Sbjct: 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI-- 276
Query: 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378
G + + G N A + AL L + +
Sbjct: 277 ------GYIHSLMG-NFEN------------AVDYFHTALGLRRDDTFSVTMLGHCIEMY 317
Query: 379 GDH 381
Sbjct: 318 IGD 320
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-----LLRCEADIARPELLSLVQ 198
A+ M +GL Y A + +A I + E + +
Sbjct: 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV---AFQNGE 208
Query: 199 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL 258
A+ LE K + + + + N LG + K +
Sbjct: 209 WKTAE---------KWFLDALE-------KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 259 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318
++ L + P N +G + G+ E + F + ++ ++
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 319 LL 320
+
Sbjct: 313 CI 314
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 46/254 (18%), Positives = 94/254 (37%), Gaps = 28/254 (11%)
Query: 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212
+H Q++G+ E+A+ +L + + + + L + + + E +G
Sbjct: 19 SHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLV---DRLYCFRDSYFETHSVEDAGR 75
Query: 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAV 271
D + EE+E+ L +++E + S +A G L + + +LS + +
Sbjct: 76 KQQDVQ---EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL 132
Query: 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331
+P + LG Y++ GD+ + CF + +N + L VL
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS---------LQNLSMVLRQL 183
Query: 332 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT--------GDHRS 383
++G+ +V AK A++ D W L NAY +
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKL----AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239
Query: 384 SGKCLEKAAKLEPN 397
+ +A K++
Sbjct: 240 ALSAYAQAEKVDRK 253
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 8e-10
Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 73/313 (23%)
Query: 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS--------------GDM 292
T G + + + +L D + +YF++ +M
Sbjct: 25 TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEM 84
Query: 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352
E++ + ++++ Q AL+ G L + E A+
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLK--------GKALNVTPDYSPE------------AEV 124
Query: 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD 412
L A+K +P+ W L Y+ GD S+ C A N V++ +
Sbjct: 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSM 178
Query: 413 AERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAWA--GFAAVQKTHHEVAAAFETE 468
R + + + M S+ + VQ++ +W G A + +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY--------LSLYFNT 230
Query: 469 ENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA---AHIWANLANAYYLTG 525
++ A A K D KA + N A +
Sbjct: 231 GQNPKISQQ------------------ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272
Query: 526 DHRSSGKCLEKVL 538
+ + + +
Sbjct: 273 SYGEALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 45/263 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A LG +Y + G A + + A L C+ ++ L +L +
Sbjct: 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGA---LTHCKNKVS---LQNLSMVLRQLQTDS 187
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--------GRLQ 259
+ + + + + K ++Q D W LG L Q
Sbjct: 188 G---------DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 260 SSISVLSSLLAVD---PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316
++S + VD +N D N + ++ + F D P
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 317 AALL--LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
LL L + S+L + + +L +L+ +
Sbjct: 299 QQLLEFLSRLTSLL----------ESKGKTKPKKLQS--MLGSLR-----PAHLGPCGDG 341
Query: 375 YYLTGDHRSSGKCLEKAAKLEPN 397
Y + + L+ + L+P
Sbjct: 342 RYQSASGQKMTLELKPLSTLQPG 364
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 3e-15
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query: 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299
A N L I + G ++ ++ + L V P NL Q G ++++ +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359
++ I A N G L + V A +C A++
Sbjct: 67 KEAIRISPTFADAYSNM---------------------GNTLKEMQDVQGALQCYTRAIQ 105
Query: 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+P A +NLA+ + +G+ + A KL+P+
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 5e-14
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 23/173 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P +A + L + + G +AV Y KA E+ PE A L
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEF------AAAHSNL- 49
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ L ++ +L+E L KE+++ A ++ +G L + +Q ++ +
Sbjct: 50 ---A-SVL-QQQG--KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320
+ ++P D NL + SG++ ++ ++ + + P A N A L
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 3e-12
Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 21/174 (12%)
Query: 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283
+EE + +++++ A + L +L + G+LQ ++ + + P D N+G
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
Query: 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343
+ D++ + +C+ I + A N +
Sbjct: 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNL---------------------ASIHKD 123
Query: 344 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ + A ALK P + NLA+ + D + ++K + +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-08
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 23/172 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+ A AH L + Q+ G+ +A+ Y++A +R A ++ +
Sbjct: 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEA----IRISPTFADA-YSNMGNTLKEMQDVQ 94
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ L ++Q + A + L I SG + +I+ +
Sbjct: 95 GA------------------LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319
L + P+ D NL D + + L+ + +
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 4e-06
Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 18/183 (9%)
Query: 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEP 419
+ P A NLAN G+ + + KA ++ P + +A + + QE
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEA 62
Query: 420 TEQLSWAGNEMASILREGDPVQIEP--PIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477
A ++I P A++ K +V A + +
Sbjct: 63 LMHYKEA-------------IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 478 CAGA--GESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 535
A A ++ + + A ALK P + NLA+ + D + ++
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Query: 536 KVL 538
K++
Sbjct: 170 KLV 172
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 5e-15
Identities = 34/259 (13%), Positives = 68/259 (26%), Gaps = 47/259 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+ A + G++Y LG A + + +A I RP+ + ++ +
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI---------RPD---MPEVFN------ 81
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
G L + + ++ D G+ L GR + + L +
Sbjct: 82 -YLG-IYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
DPN+ L +A + + + Q D+
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG---------------- 180
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
G + + + + K + L Y GD S+
Sbjct: 181 WNIVEFYLGN---ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237
Query: 388 LEKAAKLEPNCMSTRYAVA 406
+ A + V
Sbjct: 238 FKLAVANNVH-----NFVE 251
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 39/298 (13%), Positives = 74/298 (24%), Gaps = 67/298 (22%)
Query: 245 WNTLGLILLKSGRLQSSIS----VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
L + L + + + ++ +L+S D + G+ Y G + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360
+ + P G L AG D A E + L+
Sbjct: 68 QALAIRPDMPEVFNY--------LGIYLTQAGN-------FDA------AYEAFDSVLEL 106
Query: 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
DP + N A Y G + + L + +PN + AE+ +
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----DPFRSLWLYLAEQKLDEK 161
Query: 421 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 480
+ + + + W + + +E + ME
Sbjct: 162 Q-------AKEVLKQH---FEKSDKEQWG---------WNIVEFYLGNISEQTLMER--- 199
Query: 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
K + L Y GD S+ + +
Sbjct: 200 ---------------LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 23/186 (12%)
Query: 213 NSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV 271
L L+ E + + + L +D +A + G++ G + + S LA+
Sbjct: 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72
Query: 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331
P+ + LGI Q+G+ + + + F ++ D + A +N
Sbjct: 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR--------------- 117
Query: 332 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391
G L +A++ LLA + DP L A + ++ + L++
Sbjct: 118 ------GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK-EVLKQH 170
Query: 392 AKLEPN 397
+
Sbjct: 171 FEKSDK 176
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-08
Identities = 27/178 (15%), Positives = 56/178 (31%), Gaps = 22/178 (12%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P +AH G+ G+ A + P L
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---------DPN--------DPFRSLW 150
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ LD++ E L++ K + +V LG + + ++ + +
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW---NIVEFYLG-NISEQTLMERLKADATD 206
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
++ + + LG Y GD++ + F+ + + ++ YA L L G
Sbjct: 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-RYALLELSLLG 263
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 21/153 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P + L L Q+L + +A ++ E + +
Sbjct: 142 PNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN------------------ 182
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ L E +E + + ++ + LG L G L S+ ++
Sbjct: 183 --IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
+A + +N + G +
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 26/186 (13%)
Query: 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314
+ + L + + P + L A GD Q + HP A+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
G A L A A P+ I L +A
Sbjct: 62 RL---------------------GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100
Query: 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL 434
G ++ +A +L P +++ + R L ++ + +
Sbjct: 101 LEDAGQAEAAAAAYTRAHQLLPE-----EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
Query: 435 REGDPV 440
+G
Sbjct: 156 AQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 21/160 (13%)
Query: 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 282
+ L +L+ +++ + V W L L G + + LA+ P + + + L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342
G + ++A Q HP + L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE--------------------- 102
Query: 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382
A A A + P+ +I A L N D R
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 23/177 (12%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204
R P++ A +L +G + ++ + P H +
Sbjct: 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPG--------HPEA 59
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
+ + E L+++ + + LG L +G+ +++ +
Sbjct: 60 VA------RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
+ + P L + D + A+ +A L
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 29/181 (16%), Positives = 44/181 (24%), Gaps = 48/181 (26%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409
L AA++ P+ W LA+A GD + +++ L P A
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA-VARLGRV 66
Query: 410 IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAWAGFAAVQKTHHEVAAAFET 467
+R E L A P P +
Sbjct: 67 RWTQQRHAEAAVLLQQA-------------SDAAPEHPGIALWLGHALE----------- 102
Query: 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527
+ + E A A + P+ +I A L N D
Sbjct: 103 ---DAGQAEA------------------AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW 141
Query: 528 R 528
R
Sbjct: 142 R 142
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 16/178 (8%)
Query: 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQS 295
+ + + + L + ++ + + + + L DP N Y +++
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 296 AKCFQDLILKDQNHPAALINYAALLLCKYG----------SVLAG------AGANTGEGA 339
+ F+ + + NY L + LA AN +G
Sbjct: 62 QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121
Query: 340 CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
C + +A+ L +L A P+ + LA L G + +K
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 33/180 (18%), Positives = 57/180 (31%), Gaps = 24/180 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
PKN A + +YQ L KA S+ +A I +P+ +I++
Sbjct: 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---------KPDS---AEINN------ 80
Query: 208 ESSGDNSLDKEL-EPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
+ G L L P E K L + + G+ K G+ + + L
Sbjct: 81 -NYG-WFLCGRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFGLAEAYL 136
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
LA P L +G + + F+ + + A + + G
Sbjct: 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 31/208 (14%), Positives = 50/208 (24%), Gaps = 41/208 (19%)
Query: 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390
+ T + A + ALK+DPK W A Y + + + +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 391 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 450
A ++P+ R E A DP P IA
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA---------DPTYPTPYIANLN 118
Query: 451 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510
+ + A+ L +L A P+
Sbjct: 119 KGICSA--------------KQGQFGL------------------AEAYLKRSLAAQPQF 146
Query: 511 AHIWANLANAYYLTGDHRSSGKCLEKVL 538
+ LA L G + +K
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 8e-14
Identities = 25/172 (14%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
+ LGL L+ G + + L L +DP++ D L + + + + + + ++
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK 96
Query: 302 LILKDQNHPAALINYAALLLCK----------YGSVLAG------AGANTGEGACLDQAS 345
+ D + L NY L + + G Q
Sbjct: 97 ALASDSRNARVLNNYGG-FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155
Query: 346 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
AKE +L+ + + +A+ Y ++ + + + A+
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 23/174 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P +A AH L +++Q +P A Y KA ++ +
Sbjct: 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALAS---------DSRN---ARVLN------ 109
Query: 208 ESSGDNSLDKELEPEELEEILSK-LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
+ G L ++ EE + L + ++++ + ++ V+ LGL+ L+ + +
Sbjct: 110 -NYG-GFLYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320
L ++ N + ++ + + + + + +L+ L
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 46/275 (16%)
Query: 125 QSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC 184
SGL S ++ + + + A+ LGL Y + G +A KA EI
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---- 66
Query: 185 EADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVV 244
P H A ++ ++ E + + ++++ SD+R A V
Sbjct: 67 -----DPS---SADAHAALAVVFQTEM-----------EPKLADEEYRKALASDSRNARV 107
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302
N G L + R + + L P NLG+ Q Q+ + F+
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167
Query: 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362
+ ++N P+ + A LL E A++ +
Sbjct: 168 LRLNRNQPSVALEMADLLY------------KERE---YVP------ARQYYDLFAQGGG 206
Query: 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ A + D ++ + +L P
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 18/165 (10%), Positives = 41/165 (24%), Gaps = 21/165 (12%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+NA G + +A +A + L + +R +L L
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRV-FENL-----GLVSL- 152
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ ++ + ++S++ + Q V + +L K +
Sbjct: 153 ------------QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312
N + D + +A L
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 22/149 (14%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
+ L+ G + L + D LG+ Y Q G+ EQ+ + +
Sbjct: 7 HHHHSSGLVPRGSHMGDQNPLKTD-KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
D + A A + E A E AL +D +
Sbjct: 66 IDPSSADAHAALAVVF------------QTEME---PKL------ADEEYRKALASDSRN 104
Query: 365 AHIWANLANAYYLTGDHRSSGKCLEKAAK 393
A + N Y + + + L +A++
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 282
+L + + ++Q D + W LG ++ + +IS L L + P+N + L
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342
+++ Q+ + +D + + + G+ AG G + L
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE------GAGGAGLGPSKRILGSLL 192
Query: 343 QASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
S KE LAA++ DP + L + L+G++ + C A + PN
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 42/257 (16%), Positives = 74/257 (28%), Gaps = 42/257 (16%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P N A L + + +A LR A L++ + L
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDW----LRYTPAYA--HLVTPAEEGAGGAGLG 182
Query: 208 ESSGDNSLDKELEPEELEEILSKLKE--SMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
S L L E+ + + V LG++ SG ++
Sbjct: 183 PS--KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
++ L+V PN+ LG E++ ++ + + + N
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN---------- 290
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-----------HIWANLANA 374
L + N G +A E L AL K+ +IW+ L A
Sbjct: 291 --LGISCINLG---AHREA------VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339
Query: 375 YYLTGDHRSSGKCLEKA 391
+ G + G +
Sbjct: 340 LSMLGQSDAYGAADARD 356
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 36/252 (14%), Positives = 66/252 (26%), Gaps = 68/252 (26%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
G+ Q GD+ + F+ + +D H A G
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---------------------GTT 107
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
+ +A L L+ P LA ++ R + + L + P
Sbjct: 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--- 164
Query: 401 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP----------VQIEPPIAWAG 450
YA V+ ++ L + + S+L + V+++P
Sbjct: 165 --YAHLVTPAEEGAGGA----GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP- 217
Query: 451 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510
+ F N + ++ A +C AAL P
Sbjct: 218 -----DVQCGLGVLF----NLSGEYDK------------------AVDCFTAALSVRPND 250
Query: 511 AHIWANLANAYY 522
+W L
Sbjct: 251 YLLWNKLGATLA 262
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 44/287 (15%), Positives = 82/287 (28%), Gaps = 36/287 (12%)
Query: 137 EKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 196
+KG ++ F GL + G AV +E A + P+
Sbjct: 50 DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---------DPKH--- 97
Query: 197 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG 256
A L + +N E+ +S L+ ++ L +
Sbjct: 98 ---MEAWQYLGTTQAEN--------EQELLAISALRRCLELKPDNQTALMALAVSFTNES 146
Query: 257 RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316
+ + +L L P + +G +K +L D +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG--LGPSKRILGSLLSDSLFLEVKELF 204
Query: 317 --AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
A L G G + + + A +C AAL P +W L
Sbjct: 205 LAAVRLDPTS----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260
Query: 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 416
+ +A +L+P + +RY + +S ++A
Sbjct: 261 LANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 31/204 (15%)
Query: 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396
EG Q + A AA++ DPK W L + L + +L+P
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 397 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 456
+ + A+AVS + ++ E L ++ P A A +
Sbjct: 130 DNQTALMALAVS-FTNESLQRQACEILRDW-------------LRYTPAYAHLVTPAEEG 175
Query: 457 THHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK--AAHIW 514
+ L KE LAA++ DP +
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLE---------------VKELFLAAVRLDPTSIDPDVQ 220
Query: 515 ANLANAYYLTGDHRSSGKCLEKVL 538
L + L+G++ + C L
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAAL 244
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 41/256 (16%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE----LLSLVQIHHAQ 203
P+ A LGL + A+ + A + P+ +L H +
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML---------DPKDIAVHAALAVSHTNE 102
Query: 204 CLLPESSGDNSLDK--ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 261
+ SL +P + E++ S ++ + +
Sbjct: 103 HNANAA--LASLRAWLLSQP-QYEQLGSVNLQADVDIDDLN--VQSEDFFFAAPNEYREC 157
Query: 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
++L + L ++PN+ +LG+ Y S + + +A + + + A L
Sbjct: 158 RTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL- 216
Query: 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381
AN + A + AL +P + N+A +Y +
Sbjct: 217 -----------ANGNR---PQE------ALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 382 RSSGKCLEKAAKLEPN 397
+ K L +A ++
Sbjct: 257 DLAAKQLVRAIYMQVG 272
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 31/229 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
PK+ H L + + A++S +P+ L ++ +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLS---------QPQYEQLGSVNLQADVDI 136
Query: 208 ESSGDNSLDKEL-EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
+ S D P E E + L +++ + A + +LG++ S S+ + L
Sbjct: 137 DDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196
Query: 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326
+ + P++ LG +++ + + + + + N
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN--------MAV 248
Query: 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375
+ D A + L+ A+ +
Sbjct: 249 SYSNMS-------QYDL------AAKQLVRAIYMQVGGTTPTGEASREA 284
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 32/252 (12%), Positives = 63/252 (25%), Gaps = 70/252 (27%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
G++ + ++ ++A F+ + A + G A
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL--------GLTQAENE-------K 70
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
A L A DPK + A LA ++ + ++ L +P
Sbjct: 71 DGLA------IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ--- 121
Query: 401 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP----------VQIEPPIAWAG 450
Y S A+ + +E + +++ P A
Sbjct: 122 --YEQLGSVNLQADVDIDDLNVQ----SEDFFFAAPNEYRECRTLLHAALEMNPNDAQL- 174
Query: 451 FAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA 510
H + + N + + A L A++ P
Sbjct: 175 -------HASLGVLY----NLSNNYDS------------------AAANLRRAVELRPDD 205
Query: 511 AHIWANLANAYY 522
A +W L
Sbjct: 206 AQLWNKLGATLA 217
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 35/289 (12%), Positives = 72/289 (24%), Gaps = 64/289 (22%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
GL +L +A ++E + PE A L
Sbjct: 18 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQA---------APER------EEAWRSLG 62
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ +N E+ + L + D + V L + ++++ L +
Sbjct: 63 LTQAEN--------EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
Query: 268 LLAVDPNNCD---------------CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312
L P + + + + + + + N
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372
+ L + D A L A++ P A +W L
Sbjct: 175 HASLGVLY------------NLSNN---YDS------AAANLRRAVELRPDDAQLWNKLG 213
Query: 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 416
+ + +A + P + Y +AVS + A +
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396
EG + + + + A A +A P+ W +L + L A L+P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 397 NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQK 456
++ A+AVS + + L + +P
Sbjct: 87 KDIAVHAALAVSH-TNEHNANAALASLRAW-------------LLSQP------------ 120
Query: 457 THHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWAN 516
+ +++ E F + + L AAL+ +P A + A+
Sbjct: 121 ---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177
Query: 517 LANAYYLTGDHRSSGKCLEKVL 538
L Y L+ ++ S+ L + +
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAV 199
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
G L S ++ L + + + + +L +QSG E + FQ L + D +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375
GAC ++A D + A
Sbjct: 61 L---------------------GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 376 YLTGDHRSSGKCLEKAAKLEPN 397
G+ + L A +L N
Sbjct: 100 LQXGELAEAESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 21/147 (14%)
Query: 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290
+ + + +L +SG + + V +L +D + LG G
Sbjct: 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350
+ + + + D P + CL Q + A
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHA---------------------AECLLQXGELAEA 108
Query: 351 KECLLAALKADPKAAHIWANLANAYYL 377
+ L A + +
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSM 135
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 12/128 (9%), Positives = 27/128 (21%), Gaps = 21/128 (16%)
Query: 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349
G + L + L + Q+
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSL---------------------AFNQYQSGXYED 39
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSR 409
A A D + + L G + + A ++ + A
Sbjct: 40 AHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99
Query: 410 IKDAERSQ 417
++ E ++
Sbjct: 100 LQXGELAE 107
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 12/98 (12%), Positives = 25/98 (25%)
Query: 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283
E+ + D + + LG G+ +I S +D +
Sbjct: 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96
Query: 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
Q G++ ++ N P +
Sbjct: 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-12
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
L + + + + LG +Q+G + + K FQ L + D +
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL----------- 58
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
GAC A + D + A + GD +
Sbjct: 59 ----------GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG 108
Query: 388 LEKAAKLEPN 397
A L
Sbjct: 109 FYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 21/147 (14%)
Query: 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290
L LG ++G+ + + +L +D + LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350
EQ+ + + L D N P + C Q ++ A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFH---------------------AAECHLQLGDLDGA 105
Query: 351 KECLLAALKADPKAAHIWANLANAYYL 377
+ +A A A A +
Sbjct: 106 ESGFYSARALAAAQPAHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 9e-07
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 2/102 (1%)
Query: 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281
+ ++ + D A + LG G + ++ S +D N +
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91
Query: 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHP--AALINYAALLL 321
+ Q GD++ + F P AL A +L
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-12
Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 13/163 (7%)
Query: 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQ 294
MQ+ Q LG+ L GR +++++ L +P + + + L + G +
Sbjct: 1 MQTAE-QN--PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354
+ + + L+ + + + + + G L+Q A L
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGY---LEQ------ALSVL 107
Query: 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
A + +P+ A + Y L G+ + L++A LE
Sbjct: 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 3e-10
Identities = 41/263 (15%), Positives = 75/263 (28%), Gaps = 58/263 (22%)
Query: 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
M LG+ LG+ A++ +E+A + P+ A L
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQD------PEALYWL 45
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK-----------S 255
+ +L + L K + R + L +
Sbjct: 46 ----A-RTQ-LKLG--LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97
Query: 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-LKDQNHPAALI 314
G L+ ++SVL V+P G+ Y G+ +++ + + L+D P
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED--TPEIRS 155
Query: 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
+ G LD+A AL+ PK + A+A
Sbjct: 156 AL--------AELYLSMG-------RLDEA------LAQYAKALEQAPKDLDLRVRYASA 194
Query: 375 YYLTGDHRSSGKCLEKAAKLEPN 397
L G + + +
Sbjct: 195 LLLKGKAEEAARAAALEHHHHHH 217
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 9e-12
Identities = 43/393 (10%), Positives = 89/393 (22%), Gaps = 59/393 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P A Q L + + +A + P+ V +
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQAHGL---------TPDQ---VVAIASHGGGK 304
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
++ ++ +L L ++ Q V + +Q + VL
Sbjct: 305 QALET-----------VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ P+ I + G +++ + A+ +
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG--------- 404
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
V L A P A+ +
Sbjct: 405 -------------KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPV 451
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447
L + L P VA++ +++ E +QL L + + + +A
Sbjct: 452 LCQTHGLTPA-----QVVAIASHDGGKQALETVQQLLPV-------LCQAHGLTPDQVVA 499
Query: 448 WA--GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALK 505
A + + + L+ + A A V L A
Sbjct: 500 IASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559
Query: 506 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
P A+ + L +
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 592
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 9e-11
Identities = 39/353 (11%), Positives = 79/353 (22%), Gaps = 36/353 (10%)
Query: 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281
E ++ +L L ++ Q V + +Q + VL + P+ I +
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVLAG--------- 330
+++ + A+ ++ L +L
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 331 --AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388
A V L A P A+ + L
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 389 EKAAKLEPNCMSTRY----AVAVSRIKDAERSQEPTEQLS----WAGNEMASILREGDPV 440
+A L P+ + A+ ++ L+ A + + V
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETV 445
Query: 441 Q-----------IEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA 485
Q + P A + + + L+ + A A
Sbjct: 446 QRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIG 505
Query: 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
+ V L A P A+ + L +
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 558
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 37/302 (12%), Positives = 67/302 (22%), Gaps = 34/302 (11%)
Query: 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297
Q V + +Q + VL + P I + M++
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357
+ A+ + V L A
Sbjct: 248 VLCQAHGLPPDQVVAIASN---------------------IGGKQALETVQRLLPVLCQA 286
Query: 358 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
P A+ + L +A L P+ VA++ +++
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD-----QVVAIASHDGGKQAL 341
Query: 418 EPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE 477
E ++L + + P Q+ A A ++ V +
Sbjct: 342 ETVQRLLPVLCQAHGL----TPDQVV---AIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 478 CAGAGESAFLDQA-SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 536
A S QA V L A P A+ + L +
Sbjct: 395 QVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 454
Query: 537 VL 538
Sbjct: 455 TH 456
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 31/263 (11%), Positives = 59/263 (22%), Gaps = 36/263 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P A Q L + + +A + +
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGL-----------------TPDQVVAI-- 500
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+++ + ++ +L L ++ Q V + G +Q + VL
Sbjct: 501 ----ASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 556
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN----YAAL---- 319
+ P+ I + G +++ Q A+ + AL
Sbjct: 557 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQ 616
Query: 320 -LLCKYGSVLAG----AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
LL A V L A P A+
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 676
Query: 375 YYLTGDHRSSGKCLEKAAKLEPN 397
+ L +A L
Sbjct: 677 KQALETVQRLLPVLCQAHGLTQE 699
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 5e-10
Identities = 50/401 (12%), Positives = 98/401 (24%), Gaps = 73/401 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P A G Q L + + +A + +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL---------TQV--------QVVAIAS 604
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
G +L E ++ +L L ++ Q V + +Q + VL
Sbjct: 605 NIGGKQAL------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ P+ I + G +++ Q A+ +
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS------------ 706
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
V L A P A+ +
Sbjct: 707 ---------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757
Query: 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447
L +A L P VA++ +++ E ++L PV +
Sbjct: 758 LCQAHGLTPA-----QVVAIASNIGGKQALETVQRLL--------------PVLCQDHGL 798
Query: 448 WAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNV------AKECLL 501
++ A ET + L DQ A+ A E +
Sbjct: 799 TLAQVVAIASNIGGKQALETVQRLL----PVLCQAHGLTQDQVVAIASNIGGKQALETVQ 854
Query: 502 AALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542
L + + + A + + + ++++L V C
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLC 895
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 8e-09
Identities = 48/401 (11%), Positives = 108/401 (26%), Gaps = 58/401 (14%)
Query: 140 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQI 199
L P A Q L + + +A L + +A + S
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQA--HGLTPDQVVA---IASNGGG 676
Query: 200 HHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 259
A E ++ +L L ++ Q V + +Q
Sbjct: 677 KQAL------------------ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 260 SSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319
+ VL + P+ I + G +++ A+ +
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG 778
Query: 320 L-----LCKYGSVLAGA-GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373
+ + VL G + + A E + L +A + +
Sbjct: 779 KQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVV 838
Query: 374 AYYLTGDHRSSGKCLEKAAKLEPNCM--STRYAVAVSRIKDAERSQEPTEQLSWAGNEMA 431
A + + + +++ + + VA++ +++ E ++L
Sbjct: 839 AIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRL-------L 891
Query: 432 SILREGDPVQIEPPIAWAGFAAVQK-THHEVAAAFETEENELSKMEECAGAGESAFLDQA 490
+L + + ++ +A A Q + +++ L+ DQ
Sbjct: 892 PVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLT-------------PDQV 938
Query: 491 SAVN------VAKECLLAALKADPKAAHIWANLANAYYLTG 525
A+ A E + L + + N A G
Sbjct: 939 VAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNG 979
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 54/285 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH---HAQC 204
A G + + Q +A+ Y KA E+ DI + + +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWEL----HKDITYLNNRAAAEYEKGEYETA 57
Query: 205 LLPESSGDNSLDK--ELEPE----------------ELEEILSKLKESMQSDTRQAVVWN 246
+ ++L+ E E L LK++++ +
Sbjct: 58 I-------STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110
Query: 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306
T IL K + + + V+P + G YF D + K + ++I +
Sbjct: 111 T-ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Query: 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366
N A L + + A A++ DP
Sbjct: 170 PEDARGYSN---------------------RAAALAKLMSFPEAIADCNKAIEKDPNFVR 208
Query: 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411
+ A A ++ S+ + L+ A + + A + ++
Sbjct: 209 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 30/267 (11%), Positives = 73/267 (27%), Gaps = 69/267 (25%)
Query: 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAG 332
+ D G ++++ +++ + + ++ L N AA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEY----------- 49
Query: 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392
GE + A L A++ + + ++ ++ G+ L+K
Sbjct: 50 -EKGE---YET------AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99
Query: 393 KLEPNCMST-RYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451
+ ++ R A ++++++AE+ + E + P A
Sbjct: 100 EYYQKSLTEHRTADILTKLRNAEKELKKAEAE----------------AYVNPEKAEE-- 141
Query: 452 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511
+ S A + +K P+ A
Sbjct: 142 ------ARLEGKEY----FTKSDWPN------------------AVKAYTEMIKRAPEDA 173
Query: 512 HIWANLANAYYLTGDHRSSGKCLEKVL 538
++N A A + K +
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 36/309 (11%), Positives = 71/309 (22%), Gaps = 89/309 (28%)
Query: 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
A G K+ + +I + + + + N A ++ G+ E +
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLN 62
Query: 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360
D + + + A + A G L ++
Sbjct: 63 DAVEQGREMRADYKVISKSF------------ARIGN---------AYHKLGDLKKTIEY 101
Query: 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
K+ A+ + EK +K AE
Sbjct: 102 YQKSL-TEHRTADILTKLRN-------AEKE------------------LKKAEAEAYVN 135
Query: 421 EQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAVQKTHHEVAAAFETEE 469
+ + D ++ P A + AAA
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--------YSNRAAAL---- 183
Query: 470 NELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529
+L E A A++ DP + A A ++ S
Sbjct: 184 AKLMSFPE------------------AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225
Query: 530 SGKCLEKVL 538
+ + L+
Sbjct: 226 ALETLDAAR 234
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 56/384 (14%), Positives = 101/384 (26%), Gaps = 96/384 (25%)
Query: 169 KAVSSYEKAEEILLRCEAD---IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225
+A ++ E E + +A+ +AR +S Q Q +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQ------------------VTVS 48
Query: 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285
++ + GL LK G L +I + + + DP + + LGI
Sbjct: 49 ASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT 108
Query: 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS 345
++ + + + Q + N+ AL+ A NT
Sbjct: 109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSY------------TNTSH---QQD-- 151
Query: 346 AVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405
A E L +K +PK ++ N + LT S ++ Y
Sbjct: 152 ----ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL-----YLE 202
Query: 406 AVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDP----------VQIEPPIAWAGFAAV 454
A Q + + G+ + + P
Sbjct: 203 AA--------HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL----- 249
Query: 455 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIW 514
+ + A + EE A E AL+ P
Sbjct: 250 ---WNRLGATL----ANGDRSEE------------------AVEAYTRALEIQPGFIRSR 284
Query: 515 ANLANAYYLTGDHRSSGKCLEKVL 538
NL + G +R + L
Sbjct: 285 YNLGISCINLGAYREAVSNFLTAL 308
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 7e-11
Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 56/262 (21%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P +A A LG+ A+ + ++ E+ +P + + L+
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLEL---------QPN--------NLKALM- 137
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ S ++ LK ++ + + + + R+ S S
Sbjct: 138 -ALA-VSYTNT---SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192
Query: 268 LLAV----------DPNNCDCIG--NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 315
L V + + D LG+ + SG+ ++ F + +
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252
Query: 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375
A L AN ++ A E AL+ P NL +
Sbjct: 253 LGATL------------ANGDR---SEE------AVEAYTRALEIQPGFIRSRYNLGISC 291
Query: 376 YLTGDHRSSGKCLEKAAKLEPN 397
G +R + A L+
Sbjct: 292 INLGAYREAVSNFLTALSLQRK 313
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 36/231 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P N A L + Y A + + + P+ + + P
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ---------NPKY---KYLVKNKKGSP 177
Query: 208 ESSGDNSLDKELEPEELEEILSKLKE--SMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
+ S ++ LE + E D + LG++ SG +I
Sbjct: 178 GLTRRMS-KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
++ L V P + LG E++ + + + + N
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN---------- 286
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376
L + N G + A L AL K+ + A
Sbjct: 287 --LGISCINLG---AYRE------AVSNFLTALSLQRKSRNQQQVPHPAIS 326
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 37/274 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
K+ F GL + G + E A P A L
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---------DPGD------AEAWQFLG 106
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ +N E + + L+ ++ L + + Q + L +
Sbjct: 107 ITQAEN--------ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ +P + N + + M +S L + + A
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD--------- 209
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
+ TG G + N A + AAL P+ +W L + +
Sbjct: 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269
Query: 388 LEKAAKLEPNCMSTRYAVAVS-----RIKDAERS 416
+A +++P + +RY + +S ++A +
Sbjct: 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 38/314 (12%), Positives = 73/314 (23%), Gaps = 58/314 (18%)
Query: 211 GDNSLDKELE-PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
G ++ E E K++ + R+ W + + +S
Sbjct: 1 GAMEFERAKAAVESDTEFWDKMQAEWEEMARRN--WISENQEAQNQVTVSASEKGYYFHT 58
Query: 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329
+ G+ + GD+ + + IL+D A G A
Sbjct: 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL--------GITQA 110
Query: 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389
A L L+ P LA +Y T + + + L+
Sbjct: 111 ENEN-------EQAA------IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157
Query: 390 KAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE-GDPVQIEPPIAW 448
K P Y V K + + + + + + +
Sbjct: 158 NWIKQNPK-----YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 449 AGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP 508
+ F + + A + AAL P
Sbjct: 213 P------DLQTGLGVLF----HLSGEFNR------------------AIDAFNAALTVRP 244
Query: 509 KAAHIWANLANAYY 522
+ +W L
Sbjct: 245 EDYSLWNRLGATLA 258
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 17/217 (7%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLR-CEADIARPELL-SLVQIHHAQCL 205
PK + + K+ E + EA +++ +Q
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223
Query: 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVL 265
E + ++ +WN LG L R + ++
Sbjct: 224 -----------HLSG--EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
+ L + P NLGI+ G ++ F + + +
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362
+ L A + + A+ ++ + LL A DP
Sbjct: 331 AALRIALSLMDQPELFQAANLGDL--DVLLRAFNLDP 365
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 21/134 (15%)
Query: 264 VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
L + A+ + D I + ++ G +E++ F+ L + D + ++
Sbjct: 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL------- 76
Query: 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 383
A A + A +
Sbjct: 77 --------------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLK 122
Query: 384 SGKCLEKAAKLEPN 397
+ +C E + +
Sbjct: 123 AKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 3/112 (2%)
Query: 213 NSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
N + E + + ++ LK+ + GR++ + L
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
D N D I L Y +Q+A + +N + + L
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 2e-11
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 26/170 (15%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
V LG+ +K+G + +L LA P+N LG+ Y Q + +
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ + + G L G D+A + AL
Sbjct: 102 VAEANPINFNVRFRL--------GVALDNLGR-------FDEA------IDSFKIALGLR 140
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411
P + +A +Y G H + +KA +L+ +V ++ +
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG-----ASVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 6e-11
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 21/156 (13%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
V + G+ K+GR ++ +L + D + D +LGIAY ++G +++ + +
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ ++ + D A L+ +A+
Sbjct: 68 SLADAPDNVKVATVLGLTY------------VQVQK---YDL------AVPLLIKVAEAN 106
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
P ++ L A G + + A L PN
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 9e-09
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+ LG+ Y + G + E++ P+ V++
Sbjct: 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---------APDN---VKVATVL---- 82
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
G + +++ + + + L + +++ V LG+ L GR +I
Sbjct: 83 ---G-LTY-VQVQ--KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313
L + PN + +Y Q G E++ F+ D+ L
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 2e-08
Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 44/224 (19%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+ G+ + + G+ +AV E+ + L
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---------DAFD------VDVALHL- 48
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
G + + ++ L+ S+ V LGL ++ + ++ +L
Sbjct: 49 ---G-IAY-VKTG--AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ +P N + LG+A G +++ F+ + N A
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY------- 154
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
G ++ A A + D A+ A +
Sbjct: 155 -----EQMGR---HEE------ALPHFKKANELDEGASVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 9e-06
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 26/135 (19%)
Query: 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331
D + GI++ ++G Q+ + + D ++ G
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALH--------LGIAYVKT 55
Query: 332 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391
G +D+ E L +L P + L Y + + L K
Sbjct: 56 G-------AVDR------GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 392 AKLEPNCMSTRYAVA 406
A+ P
Sbjct: 103 AEANPI-----NFNV 112
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 20/170 (11%)
Query: 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311
++ + L + +P N + LG Y D S ++ + +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
A +L + T + + + AL D L
Sbjct: 80 LYAALATVLY------YQASQHMTAQ------------TRAMIDKALALDSNEITALMLL 121
Query: 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421
A+ ++ ++ + + +K L V I A+ Q ++
Sbjct: 122 ASDAFMQANYAQAIELWQKVMDLNSP--RINRTQLVESINMAKLLQRRSD 169
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
P+N+ LLG Y ++ +Y +A ++ + A L
Sbjct: 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE----------LYAALATVLYY 90
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
++S + + + + +++ D+ + L +I +
Sbjct: 91 QASQHMT----------AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140
Query: 268 LLAVDPNN 275
++ ++
Sbjct: 141 VMDLNSPR 148
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR--YAVAV 407
+ L ++A+P+ + WA L Y D+ +S +A +L A +
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 408 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP--PIAW--AGFAAVQKTHHEVAA 463
+ + + A + ++ A A + ++ A
Sbjct: 89 YYQASQHMTAQTRAMIDKA-------------LALDSNEITALMLLASDAFMQANYAQAI 135
Query: 464 AF 465
Sbjct: 136 EL 137
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 44/234 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
++A + + + + +A++ Y+KA E+ ++
Sbjct: 54 KEDAIPYINFANLLSSVNELERALAFYDKALEL---------DSSA---ATAYY------ 95
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+G N E +E ++++++ ++ LG +L+K + + ++ L
Sbjct: 96 -GAG-NVY-VVKE--MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ ++ N+ + G+ G ++++ F + +D H A N
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA----------- 199
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381
G A E L A+ P + H
Sbjct: 200 ----------GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 26/165 (15%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A + G + + + + + L N D LG + + + Q
Sbjct: 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ ++N A + L AN G LD+A A + D
Sbjct: 151 AVELNENDTEARFQFGMCL------------ANEGM---LDEA------LSQFAAVTEQD 189
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406
P A + N Y + + + L+KA ++P+ + +A
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-----HMLA 229
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 18/181 (9%)
Query: 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298
+A+ G++ + ++ S++ + N+G Y +M ++ K
Sbjct: 3 LVEAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKA 59
Query: 299 FQDLILKDQNHPAALINYAALL--LCKYGSVLAGAGANTGEGACLDQASAV---NVAKEC 353
F I +D++ A L KY + L +A N +
Sbjct: 60 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK----------DLKEALIQLRGNQLIDY 109
Query: 354 LLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 413
+ L+ A + N+A Y + + + + L A ++ ++ A+ +
Sbjct: 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ 169
Query: 414 E 414
+
Sbjct: 170 K 170
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 5e-10
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304
GL +LK L + ++ +P + +LG+ ++ + +
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364
D A LA + N N A L A L + P+
Sbjct: 80 LDPKDIAVHAA------------LAVSHTNEHN---------ANAALASLRAWLLSQPQY 118
Query: 365 AHI 367
+
Sbjct: 119 EQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 21/117 (17%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
G++ + ++ ++A F+ + K+ A + G
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL---------------------GLT 60
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ +A L A DPK + A LA ++ + ++ L +P
Sbjct: 61 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-09
Identities = 14/92 (15%), Positives = 34/92 (36%)
Query: 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDC 278
L+ L E + Q + + W +LGL ++ + +I L+ +DP +
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87
Query: 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310
L +++ + + + +L +
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396
EG + + + + A A + +P+ W +L + L A L+P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 397 NCMSTRYAVAVS 408
++ A+AVS
Sbjct: 83 KDIAVHAALAVS 94
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 45/260 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+ A HF + Y + Q ++ +A +I I Q L
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY----------SIRTIQSLF- 186
Query: 208 ESSGDNSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
N D + ++ L L +Q+D A+ + +SG Q ++
Sbjct: 187 -VIAGNYDDFK-HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244
Query: 265 LSSLLAV-----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALI 314
V + L ++G +++ + ++ + + + +
Sbjct: 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304
Query: 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374
A+ T + + ++ ++ + A
Sbjct: 305 FLQAV------------YKETVDERKIHD--LLSYFEK-----KNLHAYIEACARSAAAV 345
Query: 375 YYLTGDHRSSGKCLEKAAKL 394
+ + + K K
Sbjct: 346 FESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 49/264 (18%), Positives = 85/264 (32%), Gaps = 28/264 (10%)
Query: 156 LLGLMYQ--RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213
+ Y+ R A + E+ + + E D SL+ H L G
Sbjct: 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKT 74
Query: 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP 273
++ E LE I + K+ + + G+ +I P
Sbjct: 75 YGNRPTVTELLETIETPQKKL--TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP 132
Query: 274 NNCDCIG------NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
D I + AY+ S + QNHP I L V
Sbjct: 133 FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL-----FV 187
Query: 328 LAGAGANTGEGACLDQA-----SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382
+AG + D+A +A+ +A + ++ D A N+AN+Y +GD +
Sbjct: 188 IAGNYDDFKH---YDKALPHLEAALELAMD-----IQNDRFIAISLLNIANSYDRSGDDQ 239
Query: 383 SSGKCLEKAAKLEPNCMSTRYAVA 406
+ + +KAAK+ +
Sbjct: 240 MAVEHFQKAAKVSREKVPDLLPKV 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 30/176 (17%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
N + +Y P A+ + + + + VQI
Sbjct: 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM----------AMTVQILLKL---- 143
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVL 265
+ L+ +LK+ D + + L +G +LQ + +
Sbjct: 144 --------------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189
Query: 266 SSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
+ + + G E + Q+ + KD HP LIN L
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 27/269 (10%)
Query: 150 NAHAHFLLGLMYQ---RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
+ F +G YQ Q +K S E + A +A+ + ++
Sbjct: 5 DVKNAFYIGS-YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP 63
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESM--QSDTRQAVVWNTLGLILLKSGRLQSSISV 264
+ + + I+++L M D I +++
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324
L ++ +C+ + ++ + K + + +D++ + A + L
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 325 GSVLAGA---------------GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA 369
G L A G+ AC A+ L AL D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 370 NLANAYYLTGDHRSSGKC-LEKAAKLEPN 397
NL G L + +
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 29/258 (11%), Positives = 71/258 (27%), Gaps = 46/258 (17%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210
A F + Y + Q ++ +A EI I QC
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHS--LF 190
Query: 211 GDNSLDKELEPEELEEILSK---LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
N LD + + E+ K + E+ + +GL + + +I
Sbjct: 191 ATNFLDLK-QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 268 LLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI-----LKDQNHPAALINY 316
+AV P+ + +++ G ++++ + + D + +
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376
+L + + + L + ++A Y+
Sbjct: 310 KSL------------YLSGPDEEAIQGF-------FDFLESKMLYADLEDFAIDVAKYYH 350
Query: 377 LTGDHRSSGKCLEKAAKL 394
+ + + K ++
Sbjct: 351 ERKNFQKASAYFLKVEQV 368
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.4 bits (127), Expect = 2e-08
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A W LG K G +I L +DP + + NLG AY++ GD +++ + +Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ D A N G+ G+ D+ A E AL+ D
Sbjct: 61 ALELDPRSAEAWYN--------LGNAY----YKQGD---YDE------AIEYYQKALELD 99
Query: 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
P++A W NL NAYY GD+ + + +KA +L+P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 8e-06
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210
A A + LG Y + G +A+ Y+KA E+ P A L
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPRS------AEAWYNL---- 41
Query: 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270
G N+ + + +E + +++++ D R A W LG K G +I L
Sbjct: 42 G-NAY-YKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
+DP + + NLG AY++ GD +++ + +Q
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 44/267 (16%), Positives = 77/267 (28%), Gaps = 39/267 (14%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
L G G V+ ++ A + ++ L +
Sbjct: 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAI-YSQLGNAYFYL---- 99
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
GD +K + + + L L +SM +A LG L GR +
Sbjct: 100 ---GD--YNKAM--QYHKHDL-TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 268 LLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY-AALL 320
L + + + NLG Y G + + A+ Y L
Sbjct: 152 HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211
Query: 321 LCKYGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAHIWA 369
L + G +G D +A+ +E L A + +AA A
Sbjct: 212 LMR------DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265
Query: 370 --NLANAYYLTGDHRSSGKCLEKAAKL 394
NL N++ G + + ++ L
Sbjct: 266 NSNLGNSHIFLGQFEDAAEHYKRTLAL 292
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 38/262 (14%), Positives = 76/262 (29%), Gaps = 39/262 (14%)
Query: 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209
++ + + LG +S++ + + + L L C
Sbjct: 7 SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSS--MCLELALEGERLCNA--- 61
Query: 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269
GD + + + E +++ + +++ LG G ++ L
Sbjct: 62 -GD--CRAGV--AFFQAAIQAGTEDLRT---LSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113
Query: 270 AV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP---AALINYA 317
+ GNLG G +++A C + L + + AL N
Sbjct: 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173
Query: 318 ALL--LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK------ADPKAAHIWA 369
+ K+ L + A E LK
Sbjct: 174 NVYHAKGKHLGQRNPGKFGDDVKEALTR------AVEFYQENLKLMRDLGDRGAQGRACG 227
Query: 370 NLANAYYLTGDHRSSGKCLEKA 391
NL N YYL GD +++ + ++
Sbjct: 228 NLGNTYYLLGDFQAAIEHHQER 249
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 47/266 (17%), Positives = 85/266 (31%), Gaps = 35/266 (13%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRC--EADIARPELLSLVQIHHAQ-- 203
A + LG + +G+ +A E+ + + R L +L ++HA+
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR-ALYNLGNVYHAKGK 181
Query: 204 CLLPESSGDNSLDKELEPEE----LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ 259
L + G D + +E L KL + Q LG G Q
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQENL-KLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240
Query: 260 SSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP 310
++I L + NLG ++ G E +A+ ++ L ++
Sbjct: 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300
Query: 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA--LKADPKAAHIW 368
+ +L G+ + +A+ L A L A
Sbjct: 301 VEAQSCYSL-----GNTYTLLH---------EFNTAIEYHNRHLAIAQELGDRIGEARAC 346
Query: 369 ANLANAYYLTGDHRSSGKCLEKAAKL 394
+L NA+ G H + K E+ +L
Sbjct: 347 WSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283
++ I +L+ + T ++ TLG + + +++ L + L DP LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 284 IAYFQSGDMEQSAKCFQDLIL--KDQNHPAALINYAALL 320
GD + + ++ + + + + L
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 11/100 (11%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS- 408
E L A L + L Y ++ L A +P + +
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 409 ----RIKDAER------SQEPTEQLSWAGNEMASILREGD 438
A + + + E+ LR
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 16/182 (8%)
Query: 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281
++L E ++ + ++ + VW+ +++ + ++ +L D N +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341
+ + + L+ +D + + N ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW-NQRYFVISNTTG--------------Y 250
Query: 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401
+ + + + L +K P W L G + L + L+P+ S
Sbjct: 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP-NLLNQLLDLQPSHSSP 309
Query: 402 RY 403
Sbjct: 310 YL 311
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 4e-07
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 27/131 (20%)
Query: 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL--LCKYGSVL 328
+ N + G+ + +G+ +S F+ I D + L L +Y
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY---- 56
Query: 329 AGAGANTGEGA--CLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 386
E A C + + D +WA A+A +
Sbjct: 57 --------EEAVDCYNYV-----------INVIEDEYNKDVWAAKADALRYIEGKEVEAE 97
Query: 387 CLEKAAKLEPN 397
E AKLE +
Sbjct: 98 IAEARAKLEHH 108
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 55/385 (14%), Positives = 107/385 (27%), Gaps = 128/385 (33%)
Query: 19 SSTE--DISKTG----QASKLFILADLNNNPPET------DADANTSPLVSAPELSRLTN 66
S E I + +LF L + E + + +S +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFL----MSPIKT 100
Query: 67 EDSNHS------SSHHDK---GSILMSKEMDVAEVEGKKINKLGKCRSRISSKMDSALEF 117
E S D+ + + +K +V+ ++ KL + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQ--PYLKLRQALLELRP------AK 151
Query: 118 GVDADGDQSGLG----TSSSSREEKGLVHVARKMPKNAH---------AHFLLGLM---Y 161
V DG G G K V KM +L ++
Sbjct: 152 NVLIDGV-LGSGKTWVALDVCLSYK----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 QRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIH-HAQCLL-------------- 206
++ + S + + I LR + + EL L++ + CLL
Sbjct: 207 YQIDPNWTSRSDH--SSNIKLRIHS--IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 207 --------------------PESSGDNSLDKE---LEPEELEEILSK-LKESMQSDTRQA 242
++ SLD L P+E++ +L K L Q R+
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPN--------NCDCIGNL---GIAYFQSGD 291
+ N +S+++ + NCD + + + + +
Sbjct: 323 LTTNPR------------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 292 MEQSAKCFQDL-IL-KDQNHPAALI 314
+ F L + + P L+
Sbjct: 371 YRK---MFDRLSVFPPSAHIPTILL 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 52/374 (13%), Positives = 128/374 (34%), Gaps = 78/374 (20%)
Query: 1 MEREVYPVPVKSESGTAESSTEDISKTGQASKLFILADLNNNPPETDADANTSPLVSAPE 60
M+ +++ + +K+ + S E + + Q KL D N +D +N L
Sbjct: 180 MDFKIFWLNLKNCN-----SPETVLEMLQ--KLLYQIDPNWTS-RSDHSSNI-KL----R 226
Query: 61 LSRLTNEDSNHSSSHHDKGSILMSKEMDVAEVEGKKINKL--GKCR----SR---ISSKM 111
+ + E S + +L+ + V+ K C+ +R ++ +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV---LL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 112 DSALEFGVDADGDQSGLGTSSSSRE--EKGLVHVARKMPKNAHAH--FLLGLMYQRLG-- 165
+A + D L T + K L + +P+ L ++ + +
Sbjct: 282 SAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 166 ----QPLKAVSSYEKAEEILLRC----EADIARPELLSLVQIHHAQCLLPESSGDN---- 213
K V+ +K I+ E R L + P S+ +
Sbjct: 341 LATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDRLS-------VFPPSA--HIPTI 390
Query: 214 ---SLDKELEPEELEEILSKL-KESM-QSDTRQAVVWNTL-GLILLKSGRLQSSISVLSS 267
+ ++ ++ +++KL K S+ + +++ + ++ + L +L++ ++ S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRS 448
Query: 268 LL-AVDPNNCDCIGNLG-----------IAY-FQSGDMEQSAKCFQDLILKDQNHPAALI 314
++ + +L I + ++ + + F+ + L D I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKI 507
Query: 315 NYAALLLCKYGSVL 328
+ + GS+L
Sbjct: 508 RHDSTAWNASGSIL 521
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296
A + LG G + + +VL++ + PN+ + + G EQ
Sbjct: 22 QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81
Query: 297 KCFQDLILKDQNHPA------ALINYAALL 320
+ +I + + A++ YA L
Sbjct: 82 ELLLKIIAETSDDETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 24/111 (21%)
Query: 290 GDMEQSAKCFQ---DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346
G Q+ ++ L+ ++ + + GE +A
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTF------------RTLGE---YRKA-- 46
Query: 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ L +K P + A Y G + + L K +
Sbjct: 47 ----EAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 496 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
A+ L +K P + A Y G + + L K++
Sbjct: 46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 36/262 (13%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE--ADIARPELLSLVQIHHAQ--CLL 206
A A LG + LG +A+ ++ +I AR L +L ++HA+
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA-LYNLGNVYHAKGKSFG 145
Query: 207 PESSGDNSLDKELEPEELEEILS------KLKESMQSDTRQAVVWNTLGLILLKSGRLQS 260
D E + L+ + L ++ Q + LG G +
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 205
Query: 261 SISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHPA 311
++ L + NLG AY G+ E +++ ++ L + ++
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Query: 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA--LKADPKAAHIWA 369
+ +L G+ D A++ + L A L
Sbjct: 266 EAQSCYSL-----GNTYTLLQ---------DYEKAIDYHLKHLAIAQELNDRIGEGRACW 311
Query: 370 NLANAYYLTGDHRSSGKCLEKA 391
+L NAY G+H + EK
Sbjct: 312 SLGNAYTALGNHDQAMHFAEKH 333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 33/262 (12%), Positives = 63/262 (24%), Gaps = 70/262 (26%)
Query: 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
M + L G + G VS +E A ++ ++
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------- 48
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
+++ LG ++
Sbjct: 49 -------------------------------------IYSQLGNAYFYLHDYAKALEYHH 71
Query: 267 SLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHP--AALIN 315
L + GNLG G+ +++ C Q D+ + + A +
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 316 YAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK------ADPKAAHIWA 369
+ G G + A+ A + L +
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191
Query: 370 NLANAYYLTGDHRSSGKCLEKA 391
NL N +YL G+ R + E+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQR 213
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 10/71 (14%), Positives = 22/71 (30%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
L LK ++++ L+ DP+ +LG Y + + + +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
Query: 302 LILKDQNHPAA 312
I +
Sbjct: 67 GIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 23/106 (21%)
Query: 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331
DP + L + + + ++ F++L+ D ++ + L
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY----------- 51
Query: 332 GANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAY 375
D A + ++ + + L +A
Sbjct: 52 -ERLDR---TDD------AIDTYAQGIEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
P++ + L + + +A++ +E+ E
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET 36
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 9e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180
P ++ LG +Y+RL + A+ +Y + E+
Sbjct: 38 PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 45/262 (17%), Positives = 83/262 (31%), Gaps = 36/262 (13%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCE--ADIARPELLSLVQIHHAQ--CLL 206
A A LG + LG +A+ ++ +I AR L +L ++HA+
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR-ALYNLGNVYHAKGKSFG 141
Query: 207 PESSGDNSLDKELEPEELEEILS------KLKESMQSDTRQAVVWNTLGLILLKSGRLQS 260
D E L+ + L ++ Q + LG G +
Sbjct: 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201
Query: 261 SISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQ---DLILKDQNHPA 311
++ L + NLG AY G+ E +++ ++ L + ++
Sbjct: 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PKAAHIWA 369
+ +L G+ D A++ + L A +
Sbjct: 262 EAQSCYSL-----GNTYTLLQ---------DYEKAIDYHLKHLAIAQELKDRIGEGRACW 307
Query: 370 NLANAYYLTGDHRSSGKCLEKA 391
+L NAY G+H + EK
Sbjct: 308 SLGNAYTALGNHDQAMHFAEKH 329
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 49/267 (18%), Positives = 76/267 (28%), Gaps = 42/267 (15%)
Query: 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210
L G + G VS +E A ++ ++ L +
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA-IYSQLGNAYFYL------- 56
Query: 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270
D K L E L L ++ +A LG L G +I L
Sbjct: 57 HD--YAKAL--EYHHHDL-TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 111
Query: 271 VD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALINY-AALL 320
+ + NLG Y G + A A+ Y L
Sbjct: 112 ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171
Query: 321 LCKYGSVLAGAGANTGEGACL-----------DQASAVNVAKECLLAALKADPKAAH--I 367
L G +G + AV ++ LL A + KAA
Sbjct: 172 LVT------ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225
Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKL 394
++NL NAY G+ ++ + +K L
Sbjct: 226 YSNLGNAYIFLGEFETASEYYKKTLLL 252
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 3e-05
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A W LG K G +I L +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361
+ D N+ A N G+ G D+ A E AL+ D
Sbjct: 69 ALELDPNNAEAWYN--------LGNAYYKQGD-------YDE------AIEYYQKALELD 107
Query: 362 PKAAHIWANLANAYYLTG 379
P A NL NA G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.8 bits (97), Expect = 1e-04
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 24/144 (16%)
Query: 148 PKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
P N A A + LG Y + G +A+ Y+KA E+ P A L
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------DPNN------AEAWYNL 49
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
G N+ + + +E + +++++ D A W LG K G +I
Sbjct: 50 ----G-NAY-YKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 267 SLLAVDPNNCDCIGNLGIAYFQSG 290
L +DPNN + NLG A + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-05
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 27/146 (18%)
Query: 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLA 329
D + + G + + E + + I + + N AA L Y
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG--- 64
Query: 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389
A + A+ DP + + + A H + +
Sbjct: 65 --------------------AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104
Query: 390 KAAKLEPNC--MSTRYAVAVSRIKDA 413
KA +L+P+ + +A ++++A
Sbjct: 105 KALELDPDNETYKSNLKIAELKLREA 130
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 29/148 (19%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGANTGEG 338
+ G A + ++ + + +P L N AA ++ A
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA------- 68
Query: 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN- 397
A DPK + W+ L A + D++ + + EK + E N
Sbjct: 69 ----------------ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112
Query: 398 ---CMSTRYAVAVSRIKDAERSQEPTEQ 422
M +I++A R EP
Sbjct: 113 GSDAMKRGLETTKRKIEEANRGAEPPAD 140
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVLAGAGANTGEG 338
LG ++ D + + K + D + + N AA Y
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE--------- 59
Query: 339 ACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398
A+ V +E + + A +A + N+Y+ ++ + K+
Sbjct: 60 ---LCEKAIEVGRENR----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
Query: 399 -MSTRYAVAVSRIKDAER 415
+ + A +K+ ER
Sbjct: 113 DVLKKCQQAEKILKEQER 130
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 30/149 (20%)
Query: 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA--LLLCKYGSVL 328
++P+ + N G FQ GD Q+ K + + I ++ N AA L ++ L
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388
++ +P + A A D+ +
Sbjct: 71 KDC-----------------------EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVY 107
Query: 389 EKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417
+KA L+ + A + +Q
Sbjct: 108 QKALDLDSS-----CKEAADGYQRCMMAQ 131
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 38.5 bits (91), Expect = 5e-04
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 301
A W LG K G +I L +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 302 LILKDQNHPAALIN 315
+ D N+ A N
Sbjct: 69 ALELDPNNAEAKQN 82
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 7e-04
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 252 LLKSGRLQSSISVLSSLLAVDPNNCDCI-GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310
L+ G +++++ L L +P D +G AY + GD +++ +Q I + + P
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
Query: 311 AA 312
A
Sbjct: 70 AL 71
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 7e-04
Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL--GIAYFQSGDMEQSAK---C 298
+ N L L K+ + +L + P+ + N Y GD + +
Sbjct: 162 IQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASEL 221
Query: 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358
+++ A A + + ++ +D L
Sbjct: 222 LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI-----------VTL 270
Query: 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
+ I+ A + + G S + + LE + ++
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLN 312
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.98 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.9 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.9 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.9 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.9 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.9 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.89 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.88 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.83 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.82 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.73 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.63 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.62 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.61 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.57 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.48 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.47 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.44 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.85 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.8 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.42 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.4 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.36 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.32 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.3 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.66 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.55 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.26 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.92 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.66 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.46 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.42 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.13 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.91 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.63 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.61 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.31 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.29 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.91 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.61 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.52 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.89 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.56 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 92.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.48 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.81 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.13 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.24 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.9 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=321.32 Aligned_cols=357 Identities=20% Similarity=0.198 Sum_probs=212.3
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChh
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPL 168 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 168 (546)
+..+++.|+...++ ..+.+++...|++...+...|.+ +..++...++.+++.+|.++.+++.+|.++...|+++
T Consensus 6 a~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 44555666666655 55666666666655555444433 3355555666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHH
Q 009045 169 KAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTL 248 (546)
Q Consensus 169 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 248 (546)
+|+..|+++++++|+. ...+..++.++...|+. ++|+..|+++++.+|++..++..+
T Consensus 85 ~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDF------------IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHcCcch------------HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 6666666666654432 12233444443333333 666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccc
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 328 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 328 (546)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------- 214 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------- 214 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------
Confidence 6666666666666666666666666666666666666666666666666666666666666666666555555
Q ss_pred cccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 329 AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.
T Consensus 215 --------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 272 (388)
T 1w3b_A 215 --------------EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-------- 272 (388)
T ss_dssp --------------TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH--------
T ss_pred --------------HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------
Confidence 5566666666666666666666666666666666666666666666666666665544
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHH
Q 009045 409 RIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAF 486 (546)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~ 486 (546)
+|..+|.++...|++++|+..+.+.+. +....++..+|.+
T Consensus 273 --------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 273 --------------------------------------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp --------------------------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 455555555556666666666655333 3344555556666
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+.+|++++++.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666666666666666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=302.73 Aligned_cols=344 Identities=18% Similarity=0.189 Sum_probs=313.2
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
.-+..+.+.|+...+. ..+..++...|.....+..+|.+ +..+|.+.|++++..+|++..++..+|.++...|+
T Consensus 38 ~l~~~~~~~~~~~~a~-~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSA-HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC
Confidence 3566677788888776 88899999999998888887776 66889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 246 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (546)
+++|+..|+++++.+|+. ...+..++.++ ...|++++|+..|+++++.+|++..++.
T Consensus 117 ~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDL------------YCVRSDLGNLL-----------KALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp SSHHHHHHHHHHHHCTTC------------THHHHHHHHHH-----------HTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc------------HHHHHHHHHHH-----------HHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999997654 13344555554 3456669999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----- 248 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY----- 248 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 249 ----------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------- 305 (388)
T 1w3b_A 249 ----------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA------- 305 (388)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-------
T ss_pred ----------------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-------
Confidence 899999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHH
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGES 484 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la 484 (546)
.++..++.++...|++++|+..+.+.+. +....+++.+|
T Consensus 306 ---------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 306 ---------------------------------------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp ---------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3566778889999999999999999766 55667899999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 485 AFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999988874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=294.89 Aligned_cols=373 Identities=13% Similarity=0.093 Sum_probs=318.3
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|..+++.|++..++ ..|.+++...|+ ...+..+|.+ +..+|...|+++++.+|++..+++.+|.++...|
T Consensus 10 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAI-KYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHTSCHHHHH-HHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 45688899999999998 999999999994 5566666655 6689999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccchhhHHH-------------------------------------------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARPELLSL------------------------------------------------- 196 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------------------- 196 (546)
++++|+..|++++...|.+..... .....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIE--PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTH--HHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998764321110 00000
Q ss_pred --------------------HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHh-----c---------CcccH
Q 009045 197 --------------------VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQ-----S---------DTRQA 242 (546)
Q Consensus 197 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~-----~---------~p~~~ 242 (546)
...+...+..+. .+...|++++|+..|+++++ . +|.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNL--------YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH--------SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH--------HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 011111111110 01247999999999999999 5 36678
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++..+|.+..++..++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF- 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-
Confidence 89999999999999999999999999999999 9999999999999999999999999999999999999999988887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|++.
T Consensus 316 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 372 (514)
T 2gw1_A 316 --------------------ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP--- 372 (514)
T ss_dssp --------------------HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS---
T ss_pred --------------------HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH---
Confidence 899999999999999999999999999999999999999999999999999988764
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh----
Q 009045 403 YAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC---- 478 (546)
Q Consensus 403 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---- 478 (546)
.++..+|.++...|++++|+..+.+.+...+..
T Consensus 373 -------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 373 -------------------------------------------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp -------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred -------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 356677888888999999999998866533332
Q ss_pred ----HHhhHHHHHHH---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 479 ----AGAGESAFLDQ---ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 479 ----~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.+.
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 78899999999 999999999999999999999999999999999999999999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=294.47 Aligned_cols=350 Identities=15% Similarity=0.154 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHh------------------------hcccc
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH------------------------AQCLL 206 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------------------------~~~~~ 206 (546)
..+|+.+|.+|.+.|++++|+..|+++++.+|..... +..++..+. ....+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA-----FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH-----HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 8889999999999999999999999999987654211 110100000 00011
Q ss_pred ccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH
Q 009045 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 286 (546)
Q Consensus 207 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 286 (546)
+..++.. +...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|++++..+|++..++..++.++
T Consensus 275 ~~~~~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 275 YMLKLNK----TSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHTTSCT----TTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHH----HcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 2223444 77899999999999999988 788999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
...|++++|+..++++++..|++...+..++.++. +.|++++|+..|+++++.+|.+..
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL---------------------CVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999988887 899999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
+|..+|.+|...|++++|+..|+++++..|++...+..++...... ..+..+...+...+.. .+.++.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~~~~~~ 476 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--------GNILLANEYLQSSYAL----FQYDPL 476 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHH----CCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----CCCChH
Confidence 9999999999999999999999999999999998888877655432 1222333333333332 456788
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhccc--------hh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELSK--------ME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANL 517 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 517 (546)
+|..++.++...|++++|+..+.+.+.. .. ...+..+|.++...|++++|+..|+++++.+|+++.+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999986543 21 46788999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 518 ANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|.+|...|++++|+.+|++++++.+.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=292.64 Aligned_cols=379 Identities=14% Similarity=0.106 Sum_probs=310.4
Q ss_pred hhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 91 EVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 91 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
...|..+++.|+...++ ..|.+++...|++...+..+|.+ +..+|.+.|++++..+|+++.+++.+|.++...|
T Consensus 29 ~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAI-KYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHHTTCCC-CH-HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 44688889999999988 99999999999998888887776 6789999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhcccchhccch------------------------------hhHHHHH-----------------
Q 009045 166 QPLKAVSSYEKAEEILLRCEADIARP------------------------------ELLSLVQ----------------- 198 (546)
Q Consensus 166 ~~~~A~~~~~~al~~~p~~~~~~~~~------------------------------~~~~~~~----------------- 198 (546)
++++|+..|+ ++...|+........ .......
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp CHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999995 776666532211000 0000000
Q ss_pred ---------HHhhcccccccc-CCCccccccChhhHHHHHHHHHHHHhcCcccHH-------HHHHHHHHHHHcCChHHH
Q 009045 199 ---------IHHAQCLLPESS-GDNSLDKELEPEELEEILSKLKESMQSDTRQAV-------VWNTLGLILLKSGRLQSS 261 (546)
Q Consensus 199 ---------~~~~~~~~~~~~-g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A 261 (546)
....++..+... +.. ....|++++|+..|+++++.+|++.. ++..+|.++...|++++|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~----~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGY----LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHH----HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 000000000000 000 11235899999999999999999855 578889999999999999
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
+..|++++..+|+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.++.
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------- 321 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-------------------- 321 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH--------------------
Confidence 9999999999999 9999999999999999999999999999999999999999998887
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTE 421 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~ 421 (546)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 322 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------- 378 (537)
T 3fp2_A 322 -ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP---------------------- 378 (537)
T ss_dssp -HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----------------------
T ss_pred -hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----------------------
Confidence 899999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--hhH------HhhHHHHHHHh---
Q 009045 422 QLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--ECA------GAGESAFLDQA--- 490 (546)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~------~~~la~~~~~~--- 490 (546)
.++..+|.++...|++++|+..+.+.+...+ ... ++.+|.++...
T Consensus 379 ------------------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 379 ------------------------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred ------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 3566778888999999999999998665332 222 44567888888
Q ss_pred -------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 491 -------SAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 491 -------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|++++++.++
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=283.02 Aligned_cols=331 Identities=15% Similarity=0.085 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.....+.+++..+|.++.+++.+|.++...|++++|+..|+++++.+|.+ ..++..++.++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~l~~~~~~----- 72 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVFLA----- 72 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHH-----
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------HHHHHHHHHHHHH-----
Confidence 34456777889999999999999999999999999999999999986653 3445566666544
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHH---------
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNL--------- 282 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l--------- 282 (546)
.|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++++..+|++. .++..+
T Consensus 73 ------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 73 ------MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence 45569999999999999999999999999999999999999999999999999988 776655
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 283 ---GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 283 ---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
|.++...|++++|+..|++++...|.+..++..++.++. ..|++++|+..|+++++
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~ 205 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASK 205 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHH
Confidence 666999999999999999999999999999999998887 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCC
Q 009045 360 ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDP 439 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (546)
.+|.++.++..+|.+|...|++++|+..|++++..+|++...+..+.....
T Consensus 206 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------- 256 (450)
T 2y4t_A 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------------- 256 (450)
T ss_dssp HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999998876655433110
Q ss_pred CCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chh----hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 009045 440 VQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME----ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513 (546)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 513 (546)
...+..+|.++...|++++|+..+.+.+. +.. ...+..+|.++.+.|++++|+..++++++.+|+++.+
T Consensus 257 -----~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 257 -----LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 12456678899999999999999998665 332 2367889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 514 WANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
|..+|.++...|++++|+.+|++++++.+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999987654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=270.08 Aligned_cols=316 Identities=14% Similarity=0.085 Sum_probs=281.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.++.+|.++...|++++|+..|+++++.+|.+ ..++..+|.++. ..|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~~a~~~~-----------~~~~~~~A~~ 58 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------YIAYYRRATVFL-----------AMGKSKAALP 58 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------------HHHHHHHHHHHH-----------HccCHHHHHH
Confidence 56889999999999999999999999999997654 234555665553 4556699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChHHHHHH------------HHHHHHcCCHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNL------------GIAYFQSGDMEQ 294 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~ 294 (546)
.|+++++.+|++..++..+|.++...|++++|+..|+++++.+| ++..++..+ |.++...|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999999999999999999999999999 888888877 799999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+..|+++++..|.+..++..+|.++. ..|++++|+..++++++..|.++.++..+|.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFI---------------------KEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998888 89999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+...|++++|+..|+++++..|++...+..+.... .......+|.+
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~a~~ 243 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK----------------------------------KLNKLIESAEE 243 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------------------HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH----------------------------------HHHHHHHHHHH
Confidence 99999999999999999999999987654433211 11346677899
Q ss_pred HHhcccHHHHHHHHHhhcc--chhh----hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChH
Q 009045 455 QKTHHEVAAAFETEENELS--KMEE----CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 528 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 528 (546)
+...|++++|+..+.+.+. +... ..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998665 3322 346679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 009045 529 SSGKCLEKVLMVYCS 543 (546)
Q Consensus 529 ~A~~~~~~al~~~~~ 543 (546)
+|+.+|++++++.+.
T Consensus 324 ~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 324 EAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=281.27 Aligned_cols=324 Identities=14% Similarity=0.122 Sum_probs=287.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++.
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~----- 105 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------------TAARLQRGHLLL----- 105 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHH-----
Confidence 788889999999999999999999999999999999999999999997653 244555666654
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccH---HHHHHH------------HHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQA---VVWNTL------------GLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
..|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|++++...|.+..+
T Consensus 106 ------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 106 ------KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp ------HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 44556999999999999999988 766555 677999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+|.+|...|++++|+..|+++++.+|.+..++..++.++. ..|++++|+..|++++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY---------------------QLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 8999999999999999
Q ss_pred hcCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 359 KADPKAAHIWANL------------ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 359 ~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
..+|++...+..+ |.++...|++++|+..|++++...|+++...
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------------------------ 294 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT------------------------ 294 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH------------------------
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 9999999888766 9999999999999999999999999865322
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc--cchhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL--SKMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+..+|.++...|++++|+..+.+.+ .+....+++.+|.++...|++++|+..|++++
T Consensus 295 ------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 295 ------------------VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp ------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1357888999999999999999999966 46667899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHHHhcc
Q 009045 505 KADPKAAHIWANLANA------------YYLTG-----DHRSSGKCLEK-VLMVYCS 543 (546)
Q Consensus 505 ~~~p~~~~~~~~lg~~------------~~~~g-----~~~~A~~~~~~-al~~~~~ 543 (546)
+++|+++.++..++.+ |..+| +.+++.+.|++ +++..|+
T Consensus 357 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999955 55555 66777888887 6665544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=259.37 Aligned_cols=307 Identities=14% Similarity=0.109 Sum_probs=275.8
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|++++..+|.++.+++.+|.++...|++++|+..|+++++..|.. ..++..+|.++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~------ 81 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF------------TAARLQRGHLL------ 81 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------------chHHHHHHHHH------
Confidence 788889999999999999999999999999999999999999999996653 13445555554
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCc---ccHHHHHHH------------HHHHHHcCChHHHHHHHHhhHhcCCCChHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDT---RQAVVWNTL------------GLILLKSGRLQSSISVLSSLLAVDPNNCDC 278 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 278 (546)
...|++++|+..|+++++.+| ++..++..+ |.++...|++++|+..|++++..+|.++.+
T Consensus 82 -----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 82 -----LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp -----HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -----HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 445666999999999999999 888888877 799999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+..+|.++...|++++|+..++++++..|.+..++..+|.++. ..|++++|+..|++++
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY---------------------QLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 8999999999999999
Q ss_pred hcCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 359 KADPKAAHIWA------------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 359 ~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
+..|++..++. .+|.++...|++++|+..|++++...|++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------------ 271 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT------------------------ 271 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH------------------------
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH------------------------
Confidence 99999888654 448889999999999999999999999875332
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
..++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|++++
T Consensus 272 ------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 272 ------------------VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 13477889999999999999999999655 6667889999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhcCC
Q 009045 505 KADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+++|++..++..++.++...++
T Consensus 334 ~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 334 EHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=274.67 Aligned_cols=364 Identities=15% Similarity=0.072 Sum_probs=267.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..+..+..||.++..+|++++|+++|++|+++.+........+.. +..+.++|.+|..+|+ +++|+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~---~~~~~nla~~y~~~g~-----------~~~A~ 114 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS---LVTWGNYAWVYYHMGR-----------LSDVQ 114 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT---HHHHHHHHHHHHHTTC-----------HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHHHHcCC-----------hHHHH
Confidence 346788899999999999999999999999986654322222322 3556777777765555 59999
Q ss_pred HHHHHHHhcC--------cccHHHHHHHHHHHHHc--CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH---cCCHHHH
Q 009045 229 SKLKESMQSD--------TRQAVVWNTLGLILLKS--GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ---SGDMEQS 295 (546)
Q Consensus 229 ~~~~~al~~~--------p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A 295 (546)
.+|++++++. +..+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++.++|
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 9999998863 34577888888877765 579999999999999999999999999988654 5778899
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
++.|+++++++|++..++..++..+... +...+++++|+.++++++..+|.+..++..+|.+|
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~-----------------~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKM-----------------REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHC-----------------C------CHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 9999999999999999999888776532 22678899999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc-------CchhHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ-------EPTEQLSWAGNEMASILREGDPVQIEPPIAW 448 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (546)
...|++++|+..|+++++.+|++..++..++........... ................+.......|....++
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 337 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVC 337 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCH
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhh
Confidence 999999999999999999999999999988875433211100 0011111111222222222233345667789
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhccc--hhh---hHHhhHHHH-HHHhccHHHHHHHHHHHHHh----------------
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELSK--MEE---CAGAGESAF-LDQASAVNVAKECLLAALKA---------------- 506 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~~---------------- 506 (546)
..+|.++...|++++|+..|.+++.. .+. ..++.+|.+ +...|++++|+.+|++++++
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~ 417 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999997652 222 235566654 45789999999999988876
Q ss_pred --------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 507 --------DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 507 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+|+++.+|..||.+|...|++++|+++|++|+++-+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4666789999999999999999999999999997643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=282.46 Aligned_cols=401 Identities=12% Similarity=0.053 Sum_probs=325.3
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ 166 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 166 (546)
..+..+.+.|+...++ ..|.+++...|+. ..+...|.. +..+|...|++++.. |.++.+++.+|.+|.+.|+
T Consensus 89 ~~~~~~~~~g~~~~A~-~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAA-FVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCchHHH-HHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh
Confidence 3455677788888887 8889998888854 333333333 447788888887654 7789999999999999999
Q ss_pred hhHHHHHHHHHHHHhcccchhc-------cchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc
Q 009045 167 PLKAVSSYEKAEEILLRCEADI-------ARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 239 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p 239 (546)
+++|+..|++.. |...... ...........+..++.++. +.|++++|+..|+++++.+|
T Consensus 166 ~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 166 WQGALNLLGETN---PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-----------NLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHCSSC---TTC----------CCCSSCCHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccC---CccccccccccccccccccchhHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCc
Confidence 999999999632 2210000 00000112345666666654 45556999999999999999
Q ss_pred ccHHHHHHHHH--------------------------------------HHHHcCChHHHHHHHHhhHhcCCCChHHHHH
Q 009045 240 RQAVVWNTLGL--------------------------------------ILLKSGRLQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 240 ~~~~~~~~l~~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.+..++..++. .|.+.|++++|+..|+++++. |.+..++..
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 310 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLC 310 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHH
Confidence 99888777654 344678999999999999988 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 282 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
+|.+|...|++++|+..|+++++.+|.+..++..++.++. ..|++++|+..++++++..
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH---------------------ESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999998888887 8999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 009045 362 PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 441 (546)
Q Consensus 362 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (546)
|.+..++..+|.+|...|++++|+..|+++++.+|.+...+..++...... ..+..+...+...+.. .
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~----~ 437 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------GEHDQAISAYTTAARL----F 437 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHT----T
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh----C
Confidence 999999999999999999999999999999999999999888887654432 1222333333333332 4
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh------CCCC-HH
Q 009045 442 IEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKA------DPKA-AH 512 (546)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~ 512 (546)
+.+..+|..++.++...|++++|+..+.+.+. +.+...+..+|.++.+.|++++|+..|+++++. +|++ ..
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 55778999999999999999999999999654 566788999999999999999999999999998 6665 78
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 513 IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+|..+|.+|...|++++|+..|++++++.+.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=252.99 Aligned_cols=307 Identities=10% Similarity=0.032 Sum_probs=264.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC
Q 009045 141 VHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE 220 (546)
Q Consensus 141 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 220 (546)
...+...|.++..+..+|..+...|++++|+..|+++++.+|.+. . .+..++.+ +..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~------~~~~~~~~-----------~~~ 68 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA------S------CLPVHIGT-----------LVE 68 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------T------THHHHHHH-----------HHH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh------h------hHHHHHHH-----------HHH
Confidence 345667788999999999999999999999999999999977642 1 11122222 235
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
.|++++|+..++++++.+|.++.+++.+|.++...| ++++|+.+|++++..+|++..++..+|.++...|++++|+..|
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 567799999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 300 QDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 300 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+++++..|++...+..+|.++. ..|++++|+..|+++++.+|.++.++..+|.++...|
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 207 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYG---------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccHHHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999999998888887 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc
Q 009045 380 DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH 459 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (546)
++++|+..|++++...+.... ....+..+.++..+|.++...|
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~-------------------------------------~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGN-------------------------------------EVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC-------------------------------------SCTTTTCCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhhccc-------------------------------------cccccHHHHHHHHHHHHHHHhc
Confidence 999999999999998764321 0111334568999999999999
Q ss_pred cHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCChH
Q 009045 460 EVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAY-YLTGDHR 528 (546)
Q Consensus 460 ~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~ 528 (546)
++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999654 666788999999999999999999999999999999999999999999 5666643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-31 Score=265.86 Aligned_cols=336 Identities=13% Similarity=0.027 Sum_probs=283.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+.+++.+|.++...|++++|+..|+++++.+|+ ..++..+|.++ +..|++++|+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~la~~~-----------~~~g~~~~A~~ 60 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-------------PVFYSNLSACY-----------VSVGDLKKVVE 60 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHH-----------HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-------------HHHHHhHHHHH-----------HHHhhHHHHHH
Confidence 4678999999999999999999999999998652 23455555554 44566699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC----------------------------------
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------------------------- 275 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------- 275 (546)
.|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+
T Consensus 61 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 140 (514)
T 2gw1_A 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATP 140 (514)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998887632
Q ss_pred ---------------------------------------------hHHHHHHHHHHHH---cCCHHHHHHHHHHHHh---
Q 009045 276 ---------------------------------------------CDCIGNLGIAYFQ---SGDMEQSAKCFQDLIL--- 304 (546)
Q Consensus 276 ---------------------------------------------~~~~~~la~~~~~---~g~~~~A~~~~~~al~--- 304 (546)
..++..+|.++.. .|++++|+..|+++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 141 TELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ----------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred hhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 6677888888876 8999999999999999
Q ss_pred --h--CCCC-------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 305 --K--DQNH-------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 305 --~--~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+ +|++ ..++..+|.++. ..|++++|+..|+++++.+|. ..++..+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKF---------------------LKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHH---------------------HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred hhhccCccccccChHHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 6 5554 444555555554 999999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+..|++++..+|.+...+..++....... .+..+...+...+.. .+..+.++..+|.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~----~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ--------NYDQAGKDFDKAKEL----DPENIFPYIQLAC 346 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT--------CTTHHHHHHHHHHHT----CSSCSHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHh----ChhhHHHHHHHHH
Confidence 9999999999999999999999999998888877655421 122333333333332 4556789999999
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHh--
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH------IWANLANAYYL-- 523 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~-- 523 (546)
++...|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++..|++.. +++.+|.++..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999655 556688999999999999999999999999999998855 99999999999
Q ss_pred -cCChHHHHHHHHHHHHHhcc
Q 009045 524 -TGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 524 -~g~~~~A~~~~~~al~~~~~ 543 (546)
.|++++|+.+|++++++.+.
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999987653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=256.62 Aligned_cols=282 Identities=17% Similarity=0.173 Sum_probs=166.6
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 139 GLVHVARKMPKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 139 ~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.|.+++...|.+ ...++.+|.++...|++++|+..|+++++.+|.. ..++..+|.++.
T Consensus 48 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~------ 109 (368)
T 1fch_A 48 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------------MEAWQYLGTTQA------ 109 (368)
T ss_dssp HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHH------
T ss_pred hhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHH------
Confidence 444444444433 2345555555555555555555555555553322 122233333322
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHH--------------
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG-------------- 280 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------------- 280 (546)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|.+...+.
T Consensus 110 -----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 110 -----ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp -----HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred -----HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 2233355555555555555555555555555555555555555555555555555444433
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 281 --NLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 281 --~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
.++.++ ..|++++|+..|+++++.+|. +..++..+|.++. ..|++++|+..|++
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---------------------LSGEYDKAVDCFTA 242 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 233333 555555555555555555555 4444444444444 45555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 284 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------------------------------------- 284 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------------
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--------------------------------------
Confidence 555555555555555555555555555555555555555443
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC------
Q 009045 437 GDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA------ 510 (546)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 510 (546)
..+++.+|.++...|++++|+.+|++++++.|++
T Consensus 285 ----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 285 ----------------------------------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 3445566668889999999999999999999888
Q ss_pred -----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 511 -----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..+|..+|.++..+|++++|..+++++++.+..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 899999999999999999999999999988753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=241.89 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=240.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC-CHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG-DMEQSAK 297 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~ 297 (546)
+..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| ++++|+.
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 112 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARR 112 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 455778999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+|+++++.+|.+..++..+|.++. ..|++++|+..|+++++..|.+...+..+|.++..
T Consensus 113 ~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 113 YLSKATTLEKTYGPAWIAYGHSFA---------------------VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHTTCTTCTHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999999999999998887 89999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|+++++..|++. .++..+|.++..
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~----------------------------------------------~~~~~l~~~~~~ 205 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDP----------------------------------------------FVMHEVGVVAFQ 205 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH----------------------------------------------HHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCCh----------------------------------------------HHHHHHHHHHHH
Confidence 9999999999999999998754 457778888999
Q ss_pred cccHHHHHHHHHhhcc-----------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 458 HHEVAAAFETEENELS-----------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.|++++|+..+.+.+. +....+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 9999999999998665 33346889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcc
Q 009045 527 HRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~ 543 (546)
+++|+.+|++++++.+.
T Consensus 286 ~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 286 FENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999987754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=257.30 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=175.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
.|++++|+..|+++++.+|++...+..++.++.. +|.++...|++++|+..|+++++.+|+ ..++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 279 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCY--------------TGIFHFLKNNLLDAQVLLQESINLHPT-PNSY 279 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH--------------HHHHHHhcccHHHHHHHHHHHHhcCCC-chHH
Confidence 3589999999999999999999888877776653 577888999999999999999999999 9999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 009045 369 ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAW 448 (546)
Q Consensus 369 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (546)
..+|.++...|++++|+..|++++..+|++. .+|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------~~~ 313 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYP----------------------------------------------PTY 313 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCH----------------------------------------------HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccCCCCH----------------------------------------------HHH
Confidence 9999999999999999999999999998754 457
Q ss_pred HHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 449 AGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 449 ~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 7788889999999999999999654 56668899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccc
Q 009045 527 HRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 527 ~~~A~~~~~~al~~~~~~ 544 (546)
+++|+.+|++++++.+..
T Consensus 394 ~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 999999999999987643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=250.68 Aligned_cols=271 Identities=16% Similarity=0.149 Sum_probs=226.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++.. .|++++|+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~-----------~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD------------AEAWQFLGITQAE-----------NENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHH-----------TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC------------HHHHHHHHHHHHH-----------CCCHHHHHH
Confidence 44569999999999999999999999999997654 2445566666544 455599999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH----------HHHHHHcCCHHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL----------GIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~ 299 (546)
.|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+ |.++...|++++|+..|
T Consensus 121 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876666555 89999999999999999
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 300 QDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 300 ~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+++++.+|. +..++..+|.++. ..|++++|+.+|+++++.+|+++.+|..+|.++..
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFH---------------------LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcCccCHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999 8888888888887 88999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|+++++++|++..++.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------------ 285 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRY------------------------------------------------------ 285 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHH------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHH------------------------------------------------------
Confidence 99999999999999999887654333
Q ss_pred cccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcC
Q 009045 458 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTG 525 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g 525 (546)
.+|.++...|++++|+.+|++++++.|+ +..+|..++.++...|
T Consensus 286 ------------------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 286 ------------------------NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp ------------------------HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 3344777888999999999999998877 3678999999999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 009045 526 DHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 526 ~~~~A~~~~~~al~~~~ 542 (546)
+.+.|..+.++.++.+.
T Consensus 342 ~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 342 QPELFQAANLGDLDVLL 358 (365)
T ss_dssp CHHHHHHHHTTCCGGGT
T ss_pred cHHHHHHHHHhhHHHHH
Confidence 99999999888777664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=245.57 Aligned_cols=260 Identities=12% Similarity=0.081 Sum_probs=215.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
++..+|++..++..+|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------------~~a~~~~g~~l~~~g~---------- 146 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------YTVWHFRRVLLKSLQK---------- 146 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTC----------
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------------HHHHHHHHHHHHHccc----------
Confidence 456788999999999999999999999999999999997654 3556667776655543
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 15999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh-hcCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ-ASAVNVA-----KECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
++++|++..+|.++|.++. . .|.+++| +.+|++++.++|++..+|..+|.++.
T Consensus 227 l~l~P~~~~a~~~lg~~l~---------------------~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVIS---------------------NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHH---------------------HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHH---------------------HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999998888887 4 4444666 58899999999999999999999988
Q ss_pred HcC--ChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 377 LTG--DHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 377 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
..| ++++|+..++++ +.+|++..++..++ .
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La----------------------------------------------~- 317 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLV----------------------------------------------D- 317 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHH----------------------------------------------H-
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHHHHHHHH----------------------------------------------H-
Confidence 888 688888888887 77777654433332 2
Q ss_pred HHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHh--------cc-HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhc
Q 009045 455 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA--------SA-VNVAKECLLAA-LKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~--------g~-~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 524 (546)
+|... ++ +++|+.+|+++ ++++|.....|..++..+...
T Consensus 318 -------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 318 -------------------------------IYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp -------------------------------HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 33333 22 58999999999 999999999999999988653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=250.59 Aligned_cols=343 Identities=11% Similarity=0.027 Sum_probs=246.1
Q ss_pred hHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcc
Q 009045 134 SREEKGLVHVARK---------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204 (546)
Q Consensus 134 ~~a~~~~~~~l~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 204 (546)
.+|.+.|++++++ +|....++.++|.+|..+|++++|+.+|++++++.+...... .+ ....++...|
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-~~---~~~~~~~~~g 143 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-RI---ESPELDCEEG 143 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-CC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-ch---hhHHHHHHHH
Confidence 6777777777765 678889999999999999999999999999999876532111 11 1123344444
Q ss_pred ccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---cCChHHHHHHHHhhHhcCCCChHHHHH
Q 009045 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK---SGRLQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 205 ~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.++.. +..+++++|+.+|+++++++|+++.++..+|.++.. .+++++|++.|+++++++|++..++..
T Consensus 144 ~~~~~---------~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 144 WTRLK---------CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHH---------HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHH---------HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 43322 234678999999999999999999999999988654 578899999999999999999999999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 282 LGIAYFQS----GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 282 la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
+|..+... |++++|+.+|++++..+|.+..++..+|.++. ..|++++|+..|+++
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR---------------------RKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH---------------------HcCchHHHHHHHHHH
Confidence 99877654 67889999999999999999999999999888 899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccC
Q 009045 358 LKADPKAAHIWANLANAYYLT-------------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQE 418 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~ 418 (546)
++.+|+++.++..+|.+|... +.+++|+..|++++..+|.+...+..++......
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~------ 347 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA------ 347 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT------
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh------
Confidence 999999999999999998653 3468899999999999999999998887755432
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HHhcccHHHHHHHHHhhcc------------------------
Q 009045 419 PTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS------------------------ 473 (546)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~------------------------ 473 (546)
..+..+...+.+.+..... ......++..+|.+ ....|++++|+..|.+++.
T Consensus 348 --~~~~~A~~~~~kaL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 348 --DQYEEAEYYFQKEFSKELT-PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLS 424 (472)
T ss_dssp --TCHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444443211 11112345566654 4577899999998887542
Q ss_pred --chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009045 474 --KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 519 (546)
Q Consensus 474 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (546)
|....+++.+|.+|...|++++|+++|++++++.|.++.++.++|.
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 3445678999999999999999999999999999999999988874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=235.38 Aligned_cols=272 Identities=11% Similarity=0.113 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+...++.+|.++...|++++|+..|+++++.+|+. ..++..++.++. ..|++++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~-----------~~~~~~~A~~ 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER------------EEAWRSLGLTQA-----------ENEKDGLAII 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHH-----------HcCCHHHHHH
Confidence 45668899999999999999999999999986543 233444555443 4455699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHH--------------HH-HHHHcCCHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL--------------GI-AYFQSGDMEQ 294 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~ 294 (546)
.|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+...+..+ +. ++...|++++
T Consensus 77 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 77 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 99999999998888999999999999999999999999999888888877776 66 6788888899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+..++++++..|.+..++..+|.++. ..|++++|+..++++++.+|++..++..+|.+
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYN---------------------LSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999988888888888888777 78889999999999999888888889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+...|++++|+..|+++++..|++...+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------------------------------------------------- 243 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVM---------------------------------------------------- 243 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHH----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHH----------------------------------------------------
Confidence 9999999999999999888888764333
Q ss_pred HHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHH
Q 009045 455 QKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYY 522 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~ 522 (546)
+.+|.++...|++++|+..|+++++..|+ +..+|..+|.++.
T Consensus 244 --------------------------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 244 --------------------------YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp --------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 33444788899999999999999999999 7999999999999
Q ss_pred hcCChHHHHHHHHHHHHHhcc
Q 009045 523 LTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~~~ 543 (546)
..|++++|..+++++++.++.
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcch
Confidence 999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=238.27 Aligned_cols=260 Identities=17% Similarity=0.146 Sum_probs=228.1
Q ss_pred cChhhHHHHHH-HHHHHHhcCcccH----HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 219 LEPEELEEILS-KLKESMQSDTRQA----VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 219 ~~~~~~~~A~~-~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34567799999 9999999888764 568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHH----
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWA---- 369 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---- 369 (546)
+|+..|+++++++|++..++..+|.++. ..|++++|+..|++++...|.+...+.
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFT---------------------NESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 9999999999999999999999998887 899999999999999999998776664
Q ss_pred ------------HHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcC
Q 009045 370 ------------NLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREG 437 (546)
Q Consensus 370 ------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (546)
.++.++ ..|++++|+..|+++++.+|+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-------------------------------------- 215 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-------------------------------------- 215 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC--------------------------------------
T ss_pred HhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc--------------------------------------
Confidence 466666 99999999999999999998732
Q ss_pred CCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 009045 438 DPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 515 (546)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 515 (546)
.+.++..+|.++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.+++
T Consensus 216 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 216 ------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 124677888999999999999999999654 566688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.+|...|++++|+.+|++++++.+..
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999988654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=214.23 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=173.5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++...+.. .+......|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ ++
T Consensus 82 ~~~~~~~~----------~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 82 AYVALYRQ----------AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHHHHHT----------CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHhhhh----------hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 98821000 00011122999999999999999999999999999999999999999999999999998 66
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEEC 478 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 478 (546)
+.+++
T Consensus 151 ~~~~~--------------------------------------------------------------------------- 155 (217)
T 2pl2_A 151 PEIRS--------------------------------------------------------------------------- 155 (217)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 54433
Q ss_pred HHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 479 AGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 479 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.+|+++-.
T Consensus 156 ---~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ---ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3344788899999999999999999999999999999999999999999999998753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=234.15 Aligned_cols=241 Identities=11% Similarity=0.015 Sum_probs=214.1
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHH
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 312 (546)
++..+|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4678899999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
|+++|.++. ..|++++|+.+|+++++++|++..+|.++|.++..+|++++|+.+|++++
T Consensus 169 ~~~~g~~~~---------------------~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 169 WHHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp HHHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999988 88999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh-cccHHHH-----HH
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT-HHEVAAA-----FE 466 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~ 466 (546)
+++|++..+|+.++ .++.. .|..++| +.
T Consensus 228 ~l~P~~~~a~~~lg----------------------------------------------~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 228 KEDVRNNSVWNQRY----------------------------------------------FVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp HHCTTCHHHHHHHH----------------------------------------------HHHHHTTCSCSHHHHHHHHH
T ss_pred HhCCCCHHHHHHHH----------------------------------------------HHHHHhcCcchHHHHHHHHH
Confidence 99999876555544 44444 3333444 46
Q ss_pred HHHhh--ccchhhhHHhhHHHHHHHhc--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------C-hHHHHHH
Q 009045 467 TEENE--LSKMEECAGAGESAFLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG--------D-HRSSGKC 533 (546)
Q Consensus 467 ~~~~~--l~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~-~~~A~~~ 533 (546)
.+.++ +++....+|+++|.++...| ++++|+..++++ +.+|++..++..+|.+|..+| + +++|+.+
T Consensus 262 ~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 262 YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 66664 45777788999999999888 699999999998 999999999999999999885 3 5899999
Q ss_pred HHHH-HHHhc
Q 009045 534 LEKV-LMVYC 542 (546)
Q Consensus 534 ~~~a-l~~~~ 542 (546)
|+++ +++-+
T Consensus 341 ~~~l~~~~DP 350 (382)
T 2h6f_A 341 CEILAKEKDT 350 (382)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHHHhCc
Confidence 9998 66543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=232.12 Aligned_cols=251 Identities=18% Similarity=0.120 Sum_probs=216.3
Q ss_pred HHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 228 LSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 228 ~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
...+.+.+...+.+ ...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555544444 34599999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH----------HH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL----------AN 373 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~ 373 (546)
+++|++..++..+|.++. ..|++++|+..|++++++.|++...+..+ |.
T Consensus 127 ~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYT---------------------NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred hcCCCCHHHHHHHHHHHH---------------------ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 999999999999999888 89999999999999999999876665554 99
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|++++|+.+|+++++.+|+.. .+.++..+|.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~--------------------------------------------~~~~~~~l~~ 221 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMI--------------------------------------------DPDLQTGLGV 221 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSC--------------------------------------------CHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCcc--------------------------------------------CHHHHHHHHH
Confidence 99999999999999999999999731 2346778888
Q ss_pred HHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHH
Q 009045 454 VQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 531 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (546)
++...|++++|+..+.+.+. +....+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999655 6667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 009045 532 KCLEKVLMVYCS 543 (546)
Q Consensus 532 ~~~~~al~~~~~ 543 (546)
.+|++++++.+.
T Consensus 302 ~~~~~al~~~~~ 313 (365)
T 4eqf_A 302 SNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhCcc
Confidence 999999998865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-24 Score=217.34 Aligned_cols=349 Identities=14% Similarity=0.047 Sum_probs=286.4
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccc
Q 009045 132 SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR----LGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207 (546)
Q Consensus 132 ~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (546)
+..+|...|+++++. .++.+++.||.+|.. .+++++|+.+|+++.+.. . ..++..+|.+|
T Consensus 58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~------~~a~~~Lg~~y 121 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------L------PQAQQNLGVMY 121 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------C------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------C------HHHHHHHHHHH
Confidence 348899999999876 689999999999999 999999999999998752 1 13334455444
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..- . -..+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|
T Consensus 122 ~~g-~------g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg 190 (490)
T 2xm6_A 122 HEG-N------GVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLG 190 (490)
T ss_dssp HHT-S------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HcC-C------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 321 0 0146789999999999875 578999999999998 89999999999999986 5799999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 284 IAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 284 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
.+|.. .+++++|+.+|+++++. .++.++..++.++....+ ..+++++|+.+|+++++
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g-----------------~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG-----------------VTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------CCCCHHHHHHHHHHHHH
Confidence 99998 89999999999999875 568888899988872110 27899999999999987
Q ss_pred cCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHh
Q 009045 360 ADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILR 435 (546)
Q Consensus 360 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (546)
. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.++......... .......+...+.....
T Consensus 252 ~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g---~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 252 Q--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG---VAKNREQAISWYTKSAE 324 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT---BCCCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC---CcCCHHHHHHHHHHHHh
Confidence 5 568899999999999 99999999999999876 5677777777655443111 11223334444444444
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhcc---cHHHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 009045 436 EGDPVQIEPPIAWAGFAAVQKTHH---EVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADP 508 (546)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 508 (546)
. .++.++..+|.++...| ++++|+..|.++....+..+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 325 ~------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-- 396 (490)
T 2xm6_A 325 Q------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-- 396 (490)
T ss_dssp T------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred c------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--
Confidence 3 35688999999998866 899999999999888889999999999999 89999999999999986
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHh
Q 009045 509 KAAHIWANLANAYYL----TGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 509 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 541 (546)
.++.++++||.+|.. .+++++|+.+|+++++..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 469999999999998 899999999999999886
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=209.92 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|.++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++.. .|++++|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~~-----------~g~~~~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD------------PEALYWLARTQLK-----------LGLVNPA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------------HHHHHHHHHHHHH-----------TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHH-----------cCCHHHH
Confidence 7889999999999999999999999999999997765 3455666666544 4556999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHc-----------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKS-----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
+..|+++++.+|+++.+++.+|.++... |++++|+..|+++++++|+++.++..+|.++..+|++++|+
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|+++++++ +++.++..+|.++. ..|++++|+..|+++++++|+++.++..+|.++.
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYL---------------------SMGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999 99999999999888 8999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 009045 377 LTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~ 393 (546)
..|++++|+..|+++-.
T Consensus 197 ~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 197 LKGKAEEAARAAALEHH 213 (217)
T ss_dssp C----------------
T ss_pred HccCHHHHHHHHHHHhh
Confidence 99999999999988653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=211.03 Aligned_cols=259 Identities=13% Similarity=0.103 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
++.++.+|.++...|++++|+..|+++++.+|++. .++..++.++ ...|++++|+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~-----------~~~~~~~~A~~~ 59 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP------------YIYNRRAVCY-----------YELAKYDLAQKD 59 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS------------TTHHHHHHHH-----------HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH------------HHHHHHHHHH-----------HHHhhHHHHHHH
Confidence 44556666666666666666666666666544321 1122222222 222333555555
Q ss_pred HHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 231 LKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 231 ~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
|+++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+
T Consensus 60 ~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 60 IETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 555554 2222 22345555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHH-HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hH
Q 009045 307 QNHPAALINYA-ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD---HR 382 (546)
Q Consensus 307 p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~ 382 (546)
|.+..++..+| .++ ..+++++|+..|+++++.+|++..++..+|.++..+|+ ++
T Consensus 139 ~~~~~~~~~l~~~~~----------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 139 TTDPKVFYELGQAYY----------------------YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp CCCHHHHHHHHHHHH----------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC
T ss_pred CCcHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH
Confidence 55555555555 322 22255555555555555555555555555555555555 44
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|+..|+++++.....+ + +
T Consensus 197 ~A~~~~~~a~~~~~~~~-------------------------------------------~-~----------------- 215 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGG-------------------------------------------A-K----------------- 215 (272)
T ss_dssp TTHHHHHHHHHHHGGGG-------------------------------------------G-G-----------------
T ss_pred HHHHHHHHHHHHHhccc-------------------------------------------c-c-----------------
Confidence 45555555544322110 0 0
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 525 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 525 (546)
. ......++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 216 --------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 216 --------Y-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --------G-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --------c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0 00112567788999999999999999999999999999999999988876554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-24 Score=216.44 Aligned_cols=374 Identities=13% Similarity=-0.025 Sum_probs=294.3
Q ss_pred ccchhhhhhHHHHHhHhcCCCCcccccccCCC---------CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 009045 100 LGKCRSRISSKMDSALEFGVDADGDQSGLGTS---------SSSREEKGLVHVARKMPKNAHAHFLLGLMYQR----LGQ 166 (546)
Q Consensus 100 ~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~---------~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~ 166 (546)
.++...++ ..|.++++. .+..+++.+|.+ +..+|.+.|+++... .++.+++.+|.+|.. .++
T Consensus 56 ~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAM-DWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHH-HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 45555555 677777765 334444443332 557889999999875 589999999999999 899
Q ss_pred hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHH
Q 009045 167 PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWN 246 (546)
Q Consensus 167 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 246 (546)
+++|+.+|+++.+.. . ...+..+|.+|.. |. -..+++++|+..|+++++. .++.+++
T Consensus 131 ~~~A~~~~~~a~~~~--------~------~~a~~~Lg~~y~~-g~------g~~~d~~~A~~~~~~a~~~--~~~~a~~ 187 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG--------R------DSGQQSMGDAYFE-GD------GVTRDYVMAREWYSKAAEQ--GNVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTT--------C------HHHHHHHHHHHHH-TS------SSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHHCC--------C------HHHHHHHHHHHHc-CC------CCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 999999999998752 1 2334455554432 11 1246789999999999986 5789999
Q ss_pred HHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 247 TLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 247 ~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..+++.++.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 99999999 89999999999999876 578999999999997 89999999999999875 56788889998
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-----GDHRSSGKCLEKAAK 393 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~ 393 (546)
++..... ..+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++++
T Consensus 264 ~y~~g~~-----------------~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 264 ILEQGLA-----------------GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHTTT-----------------SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHCCCC-----------------CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 8872100 278999999999999875 6789999999999998 999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh----cccHHHHHHHHH
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAAFETEE 469 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 469 (546)
.. +..+++.++...... ........+...+.+.+.. .++.+++.+|.++.. .+++++|+..|.
T Consensus 325 ~~--~~~a~~~lg~~y~~~-----g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 325 QG--DATAQANLGAIYFRL-----GSEEEHKKAVEWFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp TT--CHHHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 64 567777777765542 1223445555555555544 357899999999999 899999999999
Q ss_pred hhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCChH--HHHHHHHHH
Q 009045 470 NELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPK---AAHIWANLANAYYLTGDHR--SSGKCLEKV 537 (546)
Q Consensus 470 ~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~--~A~~~~~~a 537 (546)
++....+..+++.+|.+|.. .+++++|+.+|+++++.+|+ ++.++.++|.++....+.. .|..+|+++
T Consensus 392 ~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 392 KAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 99888889999999999998 89999999999999999954 8999999999876533221 244555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=205.20 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
.+.+++.+|.++...|++++|+.+|+++++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------------------------------------- 34 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL------------------------------------------------- 34 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------------------------------------
Confidence 3566777777777777777777777776665
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+ .++.++..+|.++...|++++|+..|++++.+.|++ +.++..+|.++...|++++|+.+|+++
T Consensus 35 --------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 105 (258)
T 3uq3_A 35 --------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105 (258)
T ss_dssp --------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 345567777777777777777777777777776655 567777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
+.+.|. +.++. ..|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 106 ~~~~~~--------~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 106 LTEHRT--------ADILT---------------------KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHCCC--------HHHHH---------------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhcCch--------hHHHH---------------------HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 777665 12222 5666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVA 462 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (546)
+|+..|++++..+|.+...+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~----------------------------------------------------------- 177 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYS----------------------------------------------------------- 177 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH-----------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcccHHHHH-----------------------------------------------------------
Confidence 777777777777776542222
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++++.
T Consensus 178 -------------------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 178 -------------------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 222355566666666666666666666666666666666666666666666666666665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=213.15 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=237.0
Q ss_pred chhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009045 90 AEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRL 164 (546)
Q Consensus 90 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 164 (546)
.-..+..+...|+...++ ..+.+++...|+....+...|.+ +..+|...|++++..+|.+..++..+|.++...
T Consensus 24 ~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAA-LAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 345788889999999987 89999999999988887777665 568899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc-CC-CccccccChhhHHHHHHHHHHHHhcCcccH
Q 009045 165 GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-GD-NSLDKELEPEELEEILSKLKESMQSDTRQA 242 (546)
Q Consensus 165 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 242 (546)
|++++|+..|+++++..|...... ....... ..+.....+ |. . +...|++++|+..++++++..|.+.
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLG-----SVNLQAD-VDIDDLNVQSEDFF----FAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------------CC----TTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHH-----HHHhHHH-HHHHHHHHHHHhHH----HHHcccHHHHHHHHHHHHhhCCCCH
Confidence 999999999999999876542110 0000000 000000011 22 2 5788999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++..|++..++..++.++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~- 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS- 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------------AAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
..|++++|+..|++++...|. +..++..+|.++..+|++++|...+++
T Consensus 252 --------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 252 --------------------NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred --------------------HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 899999999999999999999 799999999999999999999999998
Q ss_pred HHhcCCC
Q 009045 391 AAKLEPN 397 (546)
Q Consensus 391 al~~~p~ 397 (546)
++...|+
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 8876554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=224.58 Aligned_cols=308 Identities=14% Similarity=0.084 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
+....+++.+|.++...|++++|+.+|+++++..|.+ +. ..+.++..+|.++. ..|++++|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~~--~~~~~~~~l~~~~~-----------~~g~~~~A 66 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED------LK--TLSAIYSQLGNAYF-----------YLHDYAKA 66 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------HH--HHHHHHHHHHHHHH-----------HTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccc------HH--HHHHHHHHHHHHHH-----------HhcCHHHH
Confidence 3467789999999999999999999999999996543 11 22455666666654 44556999
Q ss_pred HHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCC----
Q 009045 228 LSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD---- 291 (546)
Q Consensus 228 ~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~---- 291 (546)
+..|++++.. .|....++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.+|...|+
T Consensus 67 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 9999999876 45567899999999999999999999999999986643 4589999999999999
Q ss_pred ----------------HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 292 ----------------MEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 292 ----------------~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++|+.+|++++.+.+ ....++..+|.++. ..|++++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~ 205 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY---------------------LLGNFRD 205 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTBHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH---------------------HccCHHH
Confidence 9999999999988632 22334555555554 9999999
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHH
Q 009045 350 AKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 350 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
|+.++++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 206 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 265 (406)
T 3sf4_A 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-------------------- 265 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH--------------------
Confidence 999999999886553 348999999999999999999999999987665422110
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch--------hhhHHhhHHHHHHHhccHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM--------EECAGAGESAFLDQASAVNV 495 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~la~~~~~~g~~~~ 495 (546)
...++..+|.++...|++++|+..+.+.+... ...++..+|.++...|++++
T Consensus 266 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 266 --------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 12468889999999999999999999866522 13568899999999999999
Q ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 496 AKECLLAALKADP------KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 496 A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
|+.+|++++++.+ ....++..+|.++...|+...+...+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 9999999998743 347789999999999998755444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=201.14 Aligned_cols=245 Identities=15% Similarity=0.095 Sum_probs=212.5
Q ss_pred ccChhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
....|++++|+..|+++++. .|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 46779999999999999987 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|+.+|+++++.+|.+..++..+|.++. ..|++++|+..|+++++++|++......++.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999888 8999999999999999999999877766664
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
+ ...|++++|+..+++++...|.+...+ .++.
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~ 185 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGW-----------------------------------------------NIVE 185 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHH-----------------------------------------------HHHH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHH-----------------------------------------------HHHH
Confidence 4 667999999999999999988764322 2444
Q ss_pred HHHhcccHHHHHHHHHhhccchh------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCh
Q 009045 454 VQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 527 (546)
.+...++.++|+..+.+.+...+ ...++.+|.++...|++++|+.+|+++++.+|++... .+.++...|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHH
Confidence 55566777888888888666443 5778899999999999999999999999999987543 47888999999
Q ss_pred HHHHHHH
Q 009045 528 RSSGKCL 534 (546)
Q Consensus 528 ~~A~~~~ 534 (546)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-24 Score=216.43 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=267.3
Q ss_pred HHHhHhcCCCCcccccccCCC----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccch
Q 009045 111 MDSALEFGVDADGDQSGLGTS----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEA 186 (546)
Q Consensus 111 ~~~al~~~~~~~~~~~~~g~~----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 186 (546)
++++|+.+|.+...|...+.. +..++...|++++..+|.+...|..+|..+...|++++|+..|++++...|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~- 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID- 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH-
T ss_pred hhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-
Confidence 567778888877766544332 448889999999999999999999999999999999999999999999876321
Q ss_pred hccchhhHHHHHHH-hhcc--------------ccccccCCC--ccc----------------cccChhhHHHHHHHHHH
Q 009045 187 DIARPELLSLVQIH-HAQC--------------LLPESSGDN--SLD----------------KELEPEELEEILSKLKE 233 (546)
Q Consensus 187 ~~~~~~~~~~~~~~-~~~~--------------~~~~~~g~~--~~~----------------~~~~~~~~~~A~~~~~~ 233 (546)
-+...+... ...+ .+....|.. ... .+...|++++|..+|++
T Consensus 81 -----lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 81 -----LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -----HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 111111000 0000 000001100 000 00114666666677777
Q ss_pred HHhcCcccH--HHHHHHHHHHH-------------HcCChHHHHHHHHh------hHhc-----CCCC-------hHHHH
Q 009045 234 SMQSDTRQA--VVWNTLGLILL-------------KSGRLQSSISVLSS------LLAV-----DPNN-------CDCIG 280 (546)
Q Consensus 234 al~~~p~~~--~~~~~l~~~~~-------------~~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~ 280 (546)
+++ .|... ..|...+.... ..+++..|...|.. .++. .|.. ...|.
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 666 34332 22322222111 23345555555544 3321 2221 12333
Q ss_pred HHHHHHHH----cCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH----
Q 009045 281 NLGIAYFQ----SGDM----EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN---- 348 (546)
Q Consensus 281 ~la~~~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 348 (546)
........ .++. ..++..|++++..+|.++..|+.++.++.... ......|+++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~--------------~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSS--------------KLLAEKGDMNNAKL 300 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------HHHHTTTCCHHHHH
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------hhhhhccchhhhhh
Confidence 32222111 1222 47788899999999999999999888876210 0000268876
Q ss_pred ---HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhhccCchhHH
Q 009045 349 ---VAKECLLAALK-ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAVSRIKDAERSQEPTEQL 423 (546)
Q Consensus 349 ---~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~l~~~~~~~~~~~~~ 423 (546)
+|+..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|...+...... ..+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~~~ 372 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--------EGI 372 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH--------HHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh--------cCH
Confidence 99999999997 8999999999999999999999999999999999999885 4666555432221 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHH
Q 009045 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAV-QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECL 500 (546)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 500 (546)
..+...+...+.. .+.....+...+.+ +...|++++|...|.+.+. +.....|..++.++...|++++|...|
T Consensus 373 ~~A~~~~~~Al~~----~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 373 KSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHTC----TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 3333333333332 33445556655555 3468999999999999766 555678899999999999999999999
Q ss_pred HHHHHhCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 501 LAALKADPKAAH----IWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 501 ~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++++...|.++. +|...+......|+.+.+..+++++++.++.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999998776544 8888888889999999999999999999874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=200.48 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=216.9
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.+..|++.+|+..+++....+|++ ......++.+|+.+|++++|+..++.. +|....++..++..+...|++++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345788999999999998888887 468888999999999999999988762 5666788999999999999999999
Q ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 297 KCFQDLILK--DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 297 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
+.+++++.. +|++..+++.+|.++. ..|++++|+..|++ |.+..++..+|.+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~---------------------~~g~~~~Al~~l~~-----~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYF---------------------YDQNPDAALRTLHQ-----GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHH---------------------HTTCHHHHHHHHTT-----CCSHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHH---------------------HCCCHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence 999999876 6999999999998888 89999999999998 8999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+..+|++++|+..|+++++.+|++.......+ |. .+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a-----------------------------------------~~---~l 175 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATA-----------------------------------------WV---SL 175 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------------------------HH---HH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH-----------------------------------------HH---HH
Confidence 99999999999999999999998643221111 11 22
Q ss_pred HHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH-HH
Q 009045 455 QKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SG 531 (546)
Q Consensus 455 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~ 531 (546)
+...|++++|+..|.+.+. +.....++++|.++...|++++|+..|+++++++|++++++.++|.++...|++.+ +.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3356889999999988655 55667788999999999999999999999999999999999999999999999876 56
Q ss_pred HHHHHHHHHhccc
Q 009045 532 KCLEKVLMVYCSS 544 (546)
Q Consensus 532 ~~~~~al~~~~~~ 544 (546)
.++++++++.|..
T Consensus 256 ~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 256 RYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 8889998887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=204.24 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA----ALINYAA 318 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~ 318 (546)
..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++. .|.+.. ++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666 332222 2445554
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
++. ..|++++|+.+|+++++.+|.+..++..+|.+|...|++++|+.+|+++++.+|.+
T Consensus 83 ~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 83 ILM---------------------KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHH---------------------HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 444 66666666666666666666666666666666666666666666666666666655
Q ss_pred hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chh
Q 009045 399 MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KME 476 (546)
Q Consensus 399 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~ 476 (546)
...+ ..+|......+++++|+..+.+.+. +..
T Consensus 142 ~~~~----------------------------------------------~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 142 PKVF----------------------------------------------YELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHH----------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4333 3333111122356666666665433 333
Q ss_pred hhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 477 ECAGAGESAFLDQASA---VNVAKECLLAALKAD---PK-----AAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 477 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
..+++.+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|++++++.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 4566677778888888 888999999999875 44 23689999999999999999999999999988653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=200.70 Aligned_cols=223 Identities=11% Similarity=0.090 Sum_probs=181.0
Q ss_pred hHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
..+...++++...+|++ .++...++.+|..+|++++|+..++.. . .|.. ..+..++..+
T Consensus 16 ~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~--------~~~~----~a~~~la~~~----- 75 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S--------APEL----QAVRMFAEYL----- 75 (291)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S--------CHHH----HHHHHHHHHH-----
T ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C--------ChhH----HHHHHHHHHH-----
Confidence 55555555555556665 467888999999999999999877552 1 2221 2333333333
Q ss_pred CccccccChhhHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 213 NSLDKELEPEELEEILSKLKESMQS--DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
...++.++|++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |.+..++..+|.++..+|
T Consensus 76 ------~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 76 ------ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp ------HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT
T ss_pred ------cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC
Confidence 3456679999999999876 699999999999999999999999999998 899999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWAN 370 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 370 (546)
++++|+..|+++++.+|++.......+.+.. +...|++++|+..|+++++.+|+++.++..
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-------------------~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDATLTQLATAWVSL-------------------AAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------HHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-------------------HhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999998644433332222 125689999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 371 LANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 371 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+|.++..+|++++|+..|++++..+|+++.++.+++
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999999999876654443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=219.04 Aligned_cols=281 Identities=17% Similarity=0.124 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
.....++.+|.++...|++++|+.+|+++++..|++. .
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~------------------------------------ 83 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL------R------------------------------------ 83 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------H------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh------h------------------------------------
Confidence 3456677888899999999999988888888744320 0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|+++
T Consensus 84 -----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 84 -----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01346788899999999999999999999887 4666788999999999999999999999999
Q ss_pred Hhh------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-----------------HHHHHHHHHHHHh
Q 009045 303 ILK------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-----------------VNVAKECLLAALK 359 (546)
Q Consensus 303 l~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~ 359 (546)
+.+ .+....++..+|.++. ..|+ +++|+.+++++++
T Consensus 153 l~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 153 LTLARQLGDRLSEGRALYNLGNVYH---------------------AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHH---------------------HcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 887 3444455666666665 7888 9999999999988
Q ss_pred cC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 360 AD------PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 360 ~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
+. +....++..+|.++...|++++|+.+|++++++.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------ 261 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------------------------------ 261 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH------------------------------
Confidence 64 234568999999999999999999999999988764321110
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--------hhHHhhHHHHHHHhccHHHHHHHHHHHHH
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLDQASAVNVAKECLLAALK 505 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 505 (546)
...++..+|.++...|++++|+..+.+.+...+ ...+..+|.++...|++++|+.+|+++++
T Consensus 262 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 ----------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp ----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 124688899999999999999999998665332 46788999999999999999999999998
Q ss_pred hCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 506 ADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 506 ~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.+.. ..++..+|.+|...|++++|+.+|+++++++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 75433 568999999999999999999999999998754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=217.16 Aligned_cols=224 Identities=18% Similarity=0.182 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh-HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL-QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
+.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4468889999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 378 (546)
++++++|+ ..++..+|.++... ..+......|++++|+..|+++++++|++..+|..+|.+|...
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 68899999888711 0122223339999999999999999999999999999999999
Q ss_pred ------CChHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHH
Q 009045 379 ------GDHRSSGKCLEKAAKLEP---NCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWA 449 (546)
Q Consensus 379 ------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (546)
|++++|+.+|+++++++| ++..++
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------------------- 261 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLH----------------------------------------------- 261 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH-----------------------------------------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHH-----------------------------------------------
Confidence 999999999999999998 554333
Q ss_pred HHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 450 GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 450 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
+++|.+|...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 262 -------------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 262 -------------------------------LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp -------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344478888999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 009045 530 SGKCLEK 536 (546)
Q Consensus 530 A~~~~~~ 536 (546)
|+..+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 9987654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=196.15 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|...|+++++.+ .++.+++.+|.++...|++++|+..|++++++.|+. .++......++..+|.++..+
T Consensus 22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~--- 92 (258)
T 3uq3_A 22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-----RADYKVISKSFARIGNAYHKL--- 92 (258)
T ss_dssp HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----ccchHHHHHHHHHHHHHHHHc---
Confidence 78888899999999 999999999999999999999999999999998764 223333356677777776544
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
|++++|+..|++++...|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 93 --------~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 93 --------GDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp --------TCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred --------ccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 5559999999999999987 567788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|+..|++++..+|.+..++..+|.++. ..|++++|+..|+++++.+|+++.++..+|.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999999999999998887 8999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcC------CCChhHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVA 406 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~ 406 (546)
++...|++++|+.+|+++++++ |++...+..+.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9999999999999999999999 87766555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=192.00 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=207.5
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 577899999999999999999999999999998 7889999999999999 999999999999999885 78889
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHh----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSG 385 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 385 (546)
..+|.++. . .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+
T Consensus 78 ~~lg~~~~---------------------~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 78 HLLGNLYY---------------------SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHH---------------------HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHh---------------------CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHH
Confidence 99998887 6 89999999999999997 479999999999999 99999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh----cccH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEV 461 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 461 (546)
.+|+++++..+ . .++..+|.++.. .+++
T Consensus 135 ~~~~~a~~~~~--~----------------------------------------------~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 135 EYFTKACDLND--G----------------------------------------------DGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHTTC--H----------------------------------------------HHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHhcCc--H----------------------------------------------HHHHHHHHHHHcCCCCCCCH
Confidence 99999998652 2 346677777777 8999
Q ss_pred HHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 009045 462 AAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 533 (546)
Q Consensus 462 ~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~ 533 (546)
++|+..+.+.+...+..+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+
T Consensus 167 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~ 244 (273)
T 1ouv_A 167 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIEN 244 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 9999999998888888999999999999 9999999999999999866 8899999999999 9999999999
Q ss_pred HHHHHHHhcc
Q 009045 534 LEKVLMVYCS 543 (546)
Q Consensus 534 ~~~al~~~~~ 543 (546)
|++++++-+.
T Consensus 245 ~~~a~~~~~~ 254 (273)
T 1ouv_A 245 FKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHcCCH
Confidence 9999987643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=193.90 Aligned_cols=210 Identities=10% Similarity=0.106 Sum_probs=178.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD 112 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHH
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
.|+++++..|.+...+..++.++. ..|++++|+..++++++..|.+..++..+|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 113 MFEKALRAGMENGDLFYMLGTVLV---------------------KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH---------------------HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 999999999999999888888887 88999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT 457 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (546)
.|++++|+..|++++...|++...+.
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 197 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFY------------------------------------------------------ 197 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHH------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHH------------------------------------------------------
Confidence 99999999999999999887654332
Q ss_pred cccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 458 HHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 458 ~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
.+|.++...|++++|+.+|+++++++|++..++..++.+....|+
T Consensus 198 ------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 198 ------------------------NAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp ------------------------HHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred ------------------------HHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 334477888999999999999999999999999999888765553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=213.20 Aligned_cols=264 Identities=16% Similarity=0.156 Sum_probs=222.5
Q ss_pred cChhhHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQ----AVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 288 (546)
+..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|....++..+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 45677799999999999999987 468899999999999999999999999887 34457789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC----------------
Q 009045 289 SGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA---------------- 346 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 346 (546)
.|++++|+.++++++.+.+.. ..++..+|.++. ..|+
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH---------------------AKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------HHHHTCC-------CCCCHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---------------------HcCCcccccccchhhhhhhh
Confidence 999999999999999887643 224555555554 8888
Q ss_pred ----HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 347 ----VNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 347 ----~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
+++|+.++++++.+ .+....++..+|.++...|++++|+.+|++++.+.+.......
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------- 225 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------------- 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH-------------
Confidence 99999999999887 3345678999999999999999999999999988665432111
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchh--------hhHHhhHHHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKME--------ECAGAGESAFLD 488 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~la~~~~ 488 (546)
...++..+|.++...|++++|+..+.+.+...+ ..++..+|.++.
T Consensus 226 ---------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 226 ---------------------------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 124688999999999999999999998665222 456889999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 489 QASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++...
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985543 678999999999999999999999999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-23 Score=208.02 Aligned_cols=364 Identities=10% Similarity=0.004 Sum_probs=269.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCcccccc
Q 009045 140 LVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKEL 219 (546)
Q Consensus 140 ~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 219 (546)
|+++++.+|.+..+|..++.. ...|++++|...|+++++.+|.+ ..+|..++..+ .
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~------------~~~w~~~~~~~-----------~ 57 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSS------------GRFWKLYIEAE-----------I 57 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTC------------HHHHHHHHHHH-----------H
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHH-----------H
Confidence 678999999999999999984 78999999999999999997764 23344444443 3
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHcCChHHHHH----HHHhhHhc---CCCChHHHHHHHHHHHH---
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGL-ILLKSGRLQSSIS----VLSSLLAV---DPNNCDCIGNLGIAYFQ--- 288 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~--- 288 (546)
..|++++|...|++++...| +...|..++. +....|++++|.+ .|++++.. +|....+|...+.....
T Consensus 58 ~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC
T ss_pred hcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC
Confidence 44666999999999999999 5778888885 4456788888776 78887754 56778889888887765
Q ss_pred ------cCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH--------------------------------hhCccc
Q 009045 289 ------SGDMEQSAKCFQDLILKDQNHP--AALINYAALLLC--------------------------------KYGSVL 328 (546)
Q Consensus 289 ------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~--------------------------------~~~~~~ 328 (546)
.|+++.|+..|+++++ .|... ..|......... ......
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7899999999999999 57543 223222221100 000000
Q ss_pred cc-c-----------ccccccchHHHh----hcC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCh
Q 009045 329 AG-A-----------GANTGEGACLDQ----ASA----VNVAKECLLAALKADPKAAHIWANLANAYYL-------TGDH 381 (546)
Q Consensus 329 ~~-~-----------~~~~~~~~~~~~----~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~~ 381 (546)
.. . ..+......... .++ ...++..|++++..+|.++.+|..+|..+.. .|++
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch
Confidence 00 0 000000000001 122 2478899999999999999999999999986 7998
Q ss_pred H-------HHHHHHHHHHh-cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH-HHHHHHH
Q 009045 382 R-------SSGKCLEKAAK-LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFA 452 (546)
Q Consensus 382 ~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 452 (546)
+ +|+..|+++++ ..|++...+..++...... ..+..+...+.+.+.. .|..+ .+|..++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------g~~~~A~~~~~~al~~----~p~~~~~~~~~~~ 363 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------MKYEKVHSIYNRLLAI----EDIDPTLVYIQYM 363 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHS----SSSCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhCc----cccCchHHHHHHH
Confidence 7 99999999997 8999998888877654332 1223333334444442 34443 5899999
Q ss_pred HHHHhcccHHHHHHHHHhhccchhh--hHHhhHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAF-LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
.++...|++++|...|.+++...+. ..+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++
T Consensus 364 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 364 KFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999998874433 334444433 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009045 530 SGKCLEKVLMVY 541 (546)
Q Consensus 530 A~~~~~~al~~~ 541 (546)
|...|++++...
T Consensus 444 Ar~~~~~al~~~ 455 (530)
T 2ooe_A 444 TRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=181.36 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=132.9
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++...++++.|+..+.+++..+|.+..++.
T Consensus 32 l~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 111 (184)
T 3vtx_A 32 LKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY 111 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 33467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. ..|++++|+..|+++++++|.++.++..+|.+|..+|++++|+.+|++++++
T Consensus 112 ~lg~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 112 KLGLVYD---------------------SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH---------------------HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9888887 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCCh
Q 009045 395 EPNCM 399 (546)
Q Consensus 395 ~p~~~ 399 (546)
+|+++
T Consensus 171 ~p~~a 175 (184)
T 3vtx_A 171 EEKKA 175 (184)
T ss_dssp THHHH
T ss_pred CccCH
Confidence 98764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=181.10 Aligned_cols=144 Identities=17% Similarity=0.293 Sum_probs=136.2
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|.+..++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+. ..++++.|+..+.+++..+|.+..++..+|.+|..+|++++|+..|+++++++|++.
T Consensus 83 ~~---------------------~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NF---------------------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 87 889999999999999999999999999999999999999999999999999999876
Q ss_pred hHHHH
Q 009045 400 STRYA 404 (546)
Q Consensus 400 ~~~~~ 404 (546)
.+++.
T Consensus 142 ~~~~~ 146 (184)
T 3vtx_A 142 RAYQS 146 (184)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 54433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=205.84 Aligned_cols=282 Identities=17% Similarity=0.113 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
...++..|.++...|++++|+..|+++++..|.+ + .....++..+|.++. ..|++++|+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------~--~~~~~~~~~l~~~~~-----------~~g~~~~A~~~ 65 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED------L--KTLSAIYSQLGNAYF-----------YLHDYAKALEY 65 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC------H--HHHHHHHHHHHHHHH-----------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc------H--HHHHHHHHHHHHHHH-----------HcCCHHHHHHH
Confidence 4567889999999999999999999999986553 1 122355666666654 44556999999
Q ss_pred HHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCC-------
Q 009045 231 LKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGD------- 291 (546)
Q Consensus 231 ~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~------- 291 (546)
+++++.. .|....++..+|.++...|++++|+..|++++.+.+.. ..++..+|.++...|+
T Consensus 66 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (338)
T 3ro2_A 66 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence 9999877 55667899999999999999999999999999886543 3489999999999999
Q ss_pred -------------HHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 292 -------------MEQSAKCFQDLILKDQ------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 292 -------------~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+++|+..+++++.+.+ .....+..+|.+ +...|++++|+.
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~~~A~~ 204 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT---------------------HYLLGNFRDAVI 204 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------HHHHTCHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------------------HHHhCCHHHHHH
Confidence 9999999999987632 222334444444 449999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 353 CLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 353 ~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+......
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------ 260 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA------------------------ 260 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------------------------
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh------------------------
Confidence 999999875542 34899999999999999999999999997755432110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh
Q 009045 427 GNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506 (546)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 506 (546)
....++..+|.++...|++++|+.+++++++.
T Consensus 261 ------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 261 ------------------------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123344555777777788888888888776
Q ss_pred CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 507 DPKA------AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 507 ~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+.. ..++..+|.+|...|++++|..+|++++++.++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4432 5578899999999999999999999999887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=187.62 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=178.6
Q ss_pred hcCccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 236 QSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 236 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
..+|.. +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+...+.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 356766 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
.++.++. ..|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++
T Consensus 110 ~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 110 NYGGFLY---------------------EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHH---------------------HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988887 89999999999999999 888899999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
+..|.+...+ ..+|.
T Consensus 169 ~~~~~~~~~~----------------------------------------------~~la~------------------- 183 (252)
T 2ho1_A 169 RLNRNQPSVA----------------------------------------------LEMAD------------------- 183 (252)
T ss_dssp HHCSCCHHHH----------------------------------------------HHHHH-------------------
T ss_pred hcCcccHHHH----------------------------------------------HHHHH-------------------
Confidence 9988764332 22333
Q ss_pred cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 473 SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 473 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++...|++++|+.+++++++..|++..++..++.++...|++++|..++++++++.+.
T Consensus 184 -------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 184 -------------LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp -------------HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -------------HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5556666777777777777777777777777777777777777777777777766554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=188.83 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=172.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
. ..|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|++..
T Consensus 102 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 102 V---------------------VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 7 8999999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHH
Q 009045 401 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 480 (546)
Q Consensus 401 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 480 (546)
.+.
T Consensus 161 ~~~----------------------------------------------------------------------------- 163 (243)
T 2q7f_A 161 ARF----------------------------------------------------------------------------- 163 (243)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 332
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 481 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
.+|.++...|++++|+..|+++++..|+++.++..+|.+|...|++++|+.+|++++++.+..
T Consensus 164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 334477888999999999999999999999999999999999999999999999999987643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=188.47 Aligned_cols=214 Identities=20% Similarity=0.196 Sum_probs=194.8
Q ss_pred hCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH
Q 009045 146 KMPKN-AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 224 (546)
Q Consensus 146 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 224 (546)
.+|.+ +.+++.+|.++...|++++|+..|+++++..|.. ..++..++.++. ..|++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~-----------~~~~~ 87 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------------ADAHAALAVVFQ-----------TEMEP 87 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh------------HHHHHHHHHHHH-----------HcCCH
Confidence 45655 8899999999999999999999999999986543 234555555544 45566
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
++|+..|+++++.+|.+..++..+|.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|+++
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 88889999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
++..|.+..++..++.++. ..|++++|+..++++++..|.+...+..++.++...|+++
T Consensus 168 ~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 168 LRLNRNQPSVALEMADLLY---------------------KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HhcCcccHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 9999999999999888887 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHH
Q 009045 383 SSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 383 ~A~~~~~~al~~~p~~~~~~~ 403 (546)
+|..+++++++..|++.....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999876654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=185.20 Aligned_cols=234 Identities=13% Similarity=0.086 Sum_probs=138.6
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|.++.+++.+|.++...|++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------------- 35 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------------- 35 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------------------------------------------
Confidence 5788999999999999999999999999988762
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKC 298 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 298 (546)
+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+
T Consensus 36 -------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 36 -------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 123344455555555 555555555555555443 45555555555555 5555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHh----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
|+++++.+ +..++..+|.++. . .+++++|+.+|+++++.. ++.++..+|.+
T Consensus 101 ~~~a~~~~--~~~a~~~lg~~~~---------------------~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 101 YSKACDLK--YAEGCASLGGIYH---------------------DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHH---------------------HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHcC--CccHHHHHHHHHH---------------------cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 55555442 4444555554444 3 455555555555555543 34455555555
Q ss_pred HHH----cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 009045 375 YYL----TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAG 450 (546)
Q Consensus 375 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (546)
|.. .+++++|+.+|+++++..+ +.++..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------------------------~~a~~~ 187 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKD------------------------------------------------SPGCFN 187 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC------------------------------------------------HHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCC------------------------------------------------HHHHHH
Confidence 555 5555555555555554321 123344
Q ss_pred HHHHHHh----cccHHHHHHHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHH
Q 009045 451 FAAVQKT----HHEVAAAFETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIW 514 (546)
Q Consensus 451 l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 514 (546)
+|.++.. .+++++|+..+.+.+...+..+++.+|.+|.. .+++++|+.+|++++++.|+++..+
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444 55555555555555444445566677778887 8889999999999999988655443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=180.20 Aligned_cols=207 Identities=11% Similarity=0.017 Sum_probs=173.7
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|.+...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhCccccccccccccchHHHhh-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALK--ADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.++. .. |++++|+..++++++ ..|.+..++..+|.++...|++++|+..|+++++
T Consensus 83 ~~~~~---------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 83 GWFLC---------------------GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHH---------------------TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887 88 999999999999999 6777789999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
..|++... +..+|.
T Consensus 142 ~~~~~~~~----------------------------------------------~~~la~-------------------- 155 (225)
T 2vq2_A 142 AQPQFPPA----------------------------------------------FKELAR-------------------- 155 (225)
T ss_dssp HSTTCHHH----------------------------------------------HHHHHH--------------------
T ss_pred hCCCCchH----------------------------------------------HHHHHH--------------------
Confidence 98876433 233333
Q ss_pred chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 474 KMEECAGAGESAFLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 474 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
++...|++++|+..++++++..| ++..++..++.++...|++++|..+++.+++..+
T Consensus 156 ------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 156 ------------TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 55566666666666666666666 6666666666666666666666666666665554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=181.65 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=194.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.++.+++.+|.++...|++++|+..|+++++..|.. ..++..++.++. ..|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~-----------~~~~~~ 59 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------------ELAWLVRAEIYQ-----------YLKVND 59 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH-----------HTTCHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------hHHHHHHHHHHH-----------HcCChH
Confidence 467889999999999999999999999999999997653 234455555544 445569
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CChHHHHHHHHhhHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKS-GRLQSSISVLSSLLA--VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+|+..|++++..+|.+..++..+|.++... |++++|+..|++++. ..|.+..++..+|.++...|++++|+..|+++
T Consensus 60 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 60 KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999 66777899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCh
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP-KAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 381 (546)
++..|.+...+..++.++. ..|++++|+..++++++..| .+...+..++.++...|++
T Consensus 140 ~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 140 LAAQPQFPPAFKELARTKM---------------------LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHhCCCCchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 9999999999999988887 89999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHH
Q 009045 382 RSSGKCLEKAAKLEPNCMSTRYA 404 (546)
Q Consensus 382 ~~A~~~~~~al~~~p~~~~~~~~ 404 (546)
++|..+++.+.+.+|++......
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999876543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=204.15 Aligned_cols=341 Identities=14% Similarity=0.031 Sum_probs=161.0
Q ss_pred hhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----Cc---hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009045 94 GKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SS---SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG 165 (546)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~---~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 165 (546)
+....+.|+...++ ..|.++++. .+..+++.+|.+ .. .+|.+.|+++++. ++.+++.+|.++...|
T Consensus 10 a~~~~~~g~~~~A~-~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 10 ANEALKRGDTVTAQ-QNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHhCCCHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 44455555555554 555555444 234445555544 12 4455555555543 4555555665444444
Q ss_pred -----ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcc
Q 009045 166 -----QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTR 240 (546)
Q Consensus 166 -----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 240 (546)
++++|+.+|+++++..+ ..+++.+|.+|...+.. . .+ .++...+.++.. +.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~--------------~~A~~~Lg~~y~~~~~~------~-~~-~~a~~~~~~a~~--~g 139 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE--------------GNTLIPLAMLYLQYPHS------F-PN-VNAQQQISQWQA--AG 139 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC--------------SSCHHHHHHHHHHCGGG------C-TT-CCHHHHHHHHHH--HT
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHhCCCC------C-CC-HHHHHHHHHHHH--CC
Confidence 45556666666555321 11344444444333322 0 01 233444443332 22
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHH----HHhhHhcCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISV----LSSLLAVDPNNCDCIGNLGIAYFQSG---DMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
++.+++.+|.+|...+.+++++.. ++.+...+ +.+++.+|.+|...| ++++|+.+|+++....+.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555566666555544333332 33332222 225556666666655 55566666666666555555555
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-Y--YLTGDHRSSGKCLEK 390 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~ 390 (546)
+.+|.+|.. |. ...+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|++
T Consensus 217 ~~Lg~~y~~---------------g~--~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 217 DSVARVLGD---------------AT--LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHHTC---------------GG--GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhC---------------CC--CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 555555530 00 01145566666666655 5555566666655 3 345556666666666
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc-----cHHHHH
Q 009045 391 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-----EVAAAF 465 (546)
Q Consensus 391 al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~ 465 (546)
+.+.. ++ .+++.+|.+|. .| ++++|+
T Consensus 277 Aa~~g--~~----------------------------------------------~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 277 GRAAD--QP----------------------------------------------RAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHTT--CH----------------------------------------------HHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHCC--CH----------------------------------------------HHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 55332 33 44555555554 33 566666
Q ss_pred HHHHhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHH
Q 009045 466 ETEENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKV 537 (546)
Q Consensus 466 ~~~~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a 537 (546)
..|.++. +....+++++|.+|.. ..++++|+.+|+++.+ +.++.+.++||.+|.. ..++.+|..+|++|
T Consensus 308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6666655 5555556666655554 2256666666666554 2345555666666543 34556666666655
Q ss_pred HH
Q 009045 538 LM 539 (546)
Q Consensus 538 l~ 539 (546)
.+
T Consensus 385 ~~ 386 (452)
T 3e4b_A 385 KA 386 (452)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-22 Score=186.71 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------cCCh-------HHHHHHHHhhHh-cCCCChHHHHHHHHHHHHc
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLK-------SGRL-------QSSISVLSSLLA-VDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 289 (546)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 799999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|++++|+..|++++++.|.+.. +|..++.++. +.|++++|+..|+++++..|....+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999987 8988888877 88999999999999999999998888
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 369 ANLANAYYL-TGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 369 ~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
...+.+... .|++++|+..|+++++.+|++. .+
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------------~~ 205 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----------------------------------------------EY 205 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----------------------------------------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------------------------------------HH
Confidence 877766543 7999999999999999999764 34
Q ss_pred HHHHHHHHHhcccHHHHHHHHHhhccc------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 448 WAGFAAVQKTHHEVAAAFETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
|..++.++...|++++|+..|.+++.. .....|..++..+...|++++|...++++++..|++.
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 556666666667777776666665541 1234555666666666666666666666666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-22 Score=177.55 Aligned_cols=211 Identities=15% Similarity=0.094 Sum_probs=175.7
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+.++..++.+|.+++..|++++|+..|+++++++| .+..+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
.++. ..|++++|+..|+++++++|+++ .++..+|.++...|++++|+..|++
T Consensus 84 ~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 84 AAYR---------------------DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH---------------------HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 9888 89999999999999999999998 6799999999999999999999999
Q ss_pred HHhcCCC--ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccH--HHHHH
Q 009045 391 AAKLEPN--CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEV--AAAFE 466 (546)
Q Consensus 391 al~~~p~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~ 466 (546)
+++++|+ +..++..++...+ ..|+. +++..
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~----------------------------------------------~~~~~~~~~a~~ 176 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFY----------------------------------------------NNGADVLRKATP 176 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHGG
T ss_pred HHhcCCCcccHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHh
Confidence 9999998 7666666555433 22221 11110
Q ss_pred HHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 467 TEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 467 ~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
. .... .....+......+.+++|+.+|+++++++|++..++..++.+...
T Consensus 177 ~-----~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 177 L-----ASSN--KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp G-----TTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred c-----ccCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 0 0000 111122245567789999999999999999999999999887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=207.45 Aligned_cols=213 Identities=15% Similarity=0.058 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP-LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGD 212 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (546)
.++...+.++....|.++.+++.+|.++...|++ ++|+.+|+++++++|+. ..++..+|.++.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~---- 148 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------------VEAWNQLGEVYW---- 148 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHH----
Confidence 5556677778888999999999999999999999 99999999999997654 345666666654
Q ss_pred CccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 213 NSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS---------GRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 213 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..|++++|+.+|+++++.+|+ ..++..+|.++... |++++|+..|+++++++|++..+|..+|
T Consensus 149 -------~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 220 (474)
T 4abn_A 149 -------KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220 (474)
T ss_dssp -------HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -------HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455669999999999999999 79999999999999 9999999999999999999999999999
Q ss_pred HHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 284 IAYFQS--------GDMEQSAKCFQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 284 ~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
.+|..+ |++++|+.+|+++++++| .+..++..+|.++. ..|++++|+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~ 279 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK---------------------YEESYGEALE 279 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH---------------------HcCCHHHHHH
Confidence 999999 999999999999999999 99999999999988 8999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 280 ~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999877543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=187.60 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-HhcccchhccchhhHHHHH
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQR-------LGQP-------LKAVSSYEKAEE-ILLRCEADIARPELLSLVQ 198 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~ 198 (546)
.+|...|++++..+|.++.+|+.+|.++.. .|++ ++|+..|+++++ +.|++ ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~------------~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------ML 100 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC------------HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc------------HH
Confidence 578889999999999999999999999874 5886 999999999999 66653 23
Q ss_pred HHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChH
Q 009045 199 IHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV-VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCD 277 (546)
Q Consensus 199 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 277 (546)
+|..++.++.. .|++++|+..|+++++..|.++. +|..+|.++.+.|++++|+..|+++++..|....
T Consensus 101 ~~~~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 101 LYFAYADYEES-----------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHHH-----------TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHHh-----------cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 45555655543 45569999999999999999887 9999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQ-SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 278 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
++...+.+... .|++++|+..|+++++.+|++...|..++.++. ..|++++|+..|++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS---------------------HLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHH
Confidence 88877776543 799999999999999999999999999988887 88999999999999
Q ss_pred HHhc---CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 357 ALKA---DP-KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 357 al~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
++.. .| ....+|..++..+...|++++|...++++++..|++...
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 9995 55 378899999999999999999999999999999986543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=212.35 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=155.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
..|++++++++||.+|..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------- 38 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------- 38 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Confidence 46788888888888888888888888888777765
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 226 EILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++++|.++..+|++++|++.|++++++
T Consensus 39 ------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 39 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp ------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|++..++.++|.++. ..|++++|+..|+++++++|+++.++.++|.++..+|++++|+
T Consensus 107 ~P~~~~a~~~Lg~~~~---------------------~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 107 NPAFADAHSNLASIHK---------------------DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred CCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999998887 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 009045 386 KCLEKAAKLEPN 397 (546)
Q Consensus 386 ~~~~~al~~~p~ 397 (546)
+.|++++++.|+
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 999999887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=209.44 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=98.8
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
..|+++.+++++|.++..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
|.++. ..|++++|++.|+++++++|++..++.++|.+|..+|++++|+..|+++++++|
T Consensus 84 g~~l~---------------------~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 84 GNTLK---------------------EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66665 666677777777777766666666666666666666666666666666666666
Q ss_pred CChhH
Q 009045 397 NCMST 401 (546)
Q Consensus 397 ~~~~~ 401 (546)
++..+
T Consensus 143 ~~~~a 147 (723)
T 4gyw_A 143 DFPDA 147 (723)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 65433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=201.55 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPKNA----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
..|...|+++++.+|++. .+++.+|.+|...|++++|+.+|++++++.... .+......++..+|.++..
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------NDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------cCchHHHHHHHHHHHHHHH
Confidence 777888899999999986 589999999999999999999999999984322 1223334566677776654
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGR-----------------LQSSISVLS 266 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 266 (546)
+ |++++|+..|+++++. .+....++..+|.++...|+ +++|+.+|+
T Consensus 139 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 139 M-----------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp T-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred C-----------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 4 4559999999999887 56667789999999999999 999999999
Q ss_pred hhHhcC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhhCccccccccc
Q 009045 267 SLLAVD------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA------ALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 267 ~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
+++.+. +....++..+|.+|...|++++|+.+|++++++.+.... ++..+|.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------- 273 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH-------------- 273 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--------------
Confidence 988763 234568889999999999999999999999988764332 344444444
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+
T Consensus 274 -------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 274 -------IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp -------HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 48899999999999998876643 67888899999999999999999998887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=195.96 Aligned_cols=324 Identities=13% Similarity=0.059 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
..+|..+...|++++|+..|+++.+.. + ..+++.+|.++...|.. .++++|+..|+++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~------------~~A~~~Lg~~y~~~g~~--------~d~~~A~~~~~~A 64 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--Y------------SEAQVGLADIQVGTRDP--------AQIKQAEATYRAA 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--C------------CTGGGTCC------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--C------------HHHHHHHHHHHHccCCC--------CCHHHHHHHHHHH
Confidence 568999999999999999999998752 1 13345566555433332 2449999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 009045 235 MQSDTRQAVVWNTLGLILLKSG-----RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK-DQN 308 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~ 308 (546)
++. ++.+++.+|.++...+ ++++|+.+|++++.. +++.+++.||.+|...+...++...++..... .+.
T Consensus 65 ~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 65 ADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp ---------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 976 6789999999777766 889999999999984 55669999999999887755544444333322 245
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG---DHRSSG 385 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 385 (546)
++.+++.+|.++..... -.+..+++..+++.+...+|. +++.+|.+|...| ++++|+
T Consensus 140 ~~~a~~~Lg~~y~~~~~-----------------~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGT-----------------YDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CTTHHHHHHHHHHHHTC-----------------GGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-----------------cccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHH
Confidence 67788899988873211 223456666667776665555 8999999999999 999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-H--HhcccHH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV-Q--KTHHEVA 462 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 462 (546)
..|+++.+..+.....++.++......... ......+...+.... +.++.+++.+|.+ + ...++++
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~----~~d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLG----TPDEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGS----SCCHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CCCHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCCCHH
Confidence 999999999999888777777654322111 122333333343333 4567899999998 5 5788999
Q ss_pred HHHHHHHhhccchhhhHHhhHHHHHHHhc-----cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 009045 463 AAFETEENELSKMEECAGAGESAFLDQAS-----AVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKC 533 (546)
Q Consensus 463 ~A~~~~~~~l~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~ 533 (546)
+|+..|.++.......+++++|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+
T Consensus 269 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 269 QMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 99999999999889999999999998 66 9999999999998 8999999999999987 4499999999
Q ss_pred HHHHHHH
Q 009045 534 LEKVLMV 540 (546)
Q Consensus 534 ~~~al~~ 540 (546)
|+++.+.
T Consensus 345 ~~~Aa~~ 351 (452)
T 3e4b_A 345 LLTAARN 351 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-22 Score=177.25 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=166.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
.+.++..++.+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------------------------------- 38 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------------------------------- 38 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--------------------------------------------
Confidence 355678888899999988888888888888887632
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
+.+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++++
T Consensus 39 ------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 39 ------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp ------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 14456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCh---
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAYYLTGDH--- 381 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~--- 381 (546)
|++...+..++.++. .+|.++...|++++|+..|+++++++|+ ++.++..+|.+|...|+.
T Consensus 107 p~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 172 (228)
T 4i17_A 107 PGNATIEKLYAIYYL--------------KEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLR 172 (228)
T ss_dssp TTCHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH--------------HHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999966555555554 2466666999999999999999999999 999999999999999998
Q ss_pred ------------------------HHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 382 ------------------------RSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 382 ------------------------~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++|+.+|+++++++|++..+...++.
T Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 173 KATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999999999877765543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=187.44 Aligned_cols=221 Identities=15% Similarity=0.104 Sum_probs=189.7
Q ss_pred chHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccc
Q 009045 133 SSREEKGLVHVARK----MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 208 (546)
Q Consensus 133 ~~~a~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (546)
..+|...|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|.. ..++..+|.++.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~ 88 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------------PEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------------HHHHHHHHHHHH
Confidence 47788888888887 35678999999999999999999999999999997653 234556666554
Q ss_pred ccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 209 SSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 209 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++......++.. ..
T Consensus 89 -----------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~ 156 (275)
T 1xnf_A 89 -----------QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ 156 (275)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH
T ss_pred -----------HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Confidence 445569999999999999999999999999999999999999999999999999998777666644 66
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----C
Q 009045 289 SGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----A 364 (546)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~ 364 (546)
.|++++|+..+++++...|.+...+. ++.++. ..++.++|+..+++++...|. +
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYL---------------------GNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp HHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHT---------------------TSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHH---------------------HhcCHHHHHHHHHHHhcccccccccc
Confidence 79999999999999999998866554 444444 677889999999999987764 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 365 AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..++..+|.++...|++++|+.+|++++..+|++.
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 78999999999999999999999999999999764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=193.00 Aligned_cols=320 Identities=11% Similarity=-0.031 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhc-cccccccCCCccccccChhhHHHHH-
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQ-CLLPESSGDNSLDKELEPEELEEIL- 228 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~A~- 228 (546)
......-...++..+++++|...++++.+..+..+ ..++.. .++.+ ..-+ .+..+++..+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~---~~~~~~----~y~~ll~~r~----------~~~~~~~~~~~~ 74 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME---EDQDLH----LYYSLMEFRH----------NLMLEYLEPLEK 74 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC---CCHHHH----HHHHHHHHHH----------HHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc---cchHHH----HHHHHHHHHH----------HHHHhhcCcccc
Confidence 33444455567789999999999999877644321 122221 11110 0000 01112223333
Q ss_pred ----------HHHHHHHhcCcccHH------HHHHHHHHHHHcCChHHHHHHHHhhHhc---CC---CChHHHHHHHHHH
Q 009045 229 ----------SKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAV---DP---NNCDCIGNLGIAY 286 (546)
Q Consensus 229 ----------~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~ 286 (546)
..++++-. .|.... .++.+|.++...|++++|+..|++++.+ .+ ..+.++..+|.+|
T Consensus 75 ~~~e~~~~~~~~~~~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 153 (383)
T 3ulq_A 75 MRIEEQPRLSDLLLEIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153 (383)
T ss_dssp SCGGGSCCHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34443322 222222 4555999999999999999999999987 22 3468899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA-- 364 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 364 (546)
..+|++++|+.++++++++.+.........+.++. .+|.++...|++++|+.+|++++++.+..
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS--------------LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999986655431112222222 23555559999999999999999885542
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCC
Q 009045 365 ----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPV 440 (546)
Q Consensus 365 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (546)
..++.++|.+|..+|++++|+.+|++++.+.+....
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------- 259 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI---------------------------------------- 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----------------------------------------
Confidence 358999999999999999999999999986322110
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-------hhhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhCCCC
Q 009045 441 QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-------EECAGAGESAFLDQASA---VNVAKECLLAALKADPKA 510 (546)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~ 510 (546)
.+..+.++..+|.++...|++++|+..+.+++.-. ....+..+|.++...|+ +++|+.++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 01224578899999999999999999999866521 12234578999999998 88888888877 334455
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 511 AHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
..++..+|.+|...|++++|..+|++++++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=193.33 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccc
Q 009045 134 SREEKGLVHVARKMPKN----AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPES 209 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
.+|...|+++++.+|.+ ..++..+|.++...|++++|+.++++++++.+.. ++....+.++..++.++..
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------GDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------cccHHHHHHHHHHHHHHHH
Confidence 78888899999999988 4788999999999999999999999999885432 1222334566677766644
Q ss_pred cCCCccccccChhhHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCC--------------------hHHHHH
Q 009045 210 SGDNSLDKELEPEELEEILSKLKESMQSDTRQ------AVVWNTLGLILLKSGR--------------------LQSSIS 263 (546)
Q Consensus 210 ~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~--------------------~~~A~~ 263 (546)
+ |++++|+..++++++..+.. ..++..+|.++...|+ +++|+.
T Consensus 96 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 96 L-----------GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp T-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred c-----------cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 4 55699999999999876543 4489999999999999 999999
Q ss_pred HHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhhCcccccc
Q 009045 264 VLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA------ALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 264 ~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+++++.+ .+....++..+|.++...|++++|+.++++++++.+.... ++..+|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~------------ 232 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA------------ 232 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH------------
Confidence 99999876 2334568999999999999999999999999987654322 34444444
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++...+.
T Consensus 233 ---------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 233 ---------YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ---------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 459999999999999999886654 778999999999999999999999999887553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=186.81 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=191.3
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-- 306 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 306 (546)
.+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999995 66778899999999999999999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 009045 307 ------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--------PKAAHIWANLA 372 (546)
Q Consensus 307 ------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 372 (546)
|....++..+|.++. ..|++++|+.+|++++++. |....++..+|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYG---------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 444555666666665 8999999999999999874 55678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.++...|++++|+.+|++++...... .....+....++..+|
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~~~~la 202 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTK--------------------------------------LGPDDPNVAKTKNNLA 202 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--------------------------------------SCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH--------------------------------------hCCCCHHHHHHHHHHH
Confidence 99999999999999999999862110 0000111235688899
Q ss_pred HHHHhcccHHHHHHHHHhhccchh-----------------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKME-----------------ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWA 515 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 515 (546)
.++...|++++|+..+.+.+...+ ...+..++..+...+.+.+|+..+++++...|..+.++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (311)
T 3nf1_A 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK 282 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 999999999999999998765221 122334555556667788888899999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 516 NLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
.+|.+|...|++++|+.+|++++++.+.
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=183.94 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=185.7
Q ss_pred cChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIA 285 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~ 285 (546)
...|++++|+..|+++++. .+..+.+++.+|.+|...|++++|+.++++++++.+.. ..++..+|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 4556679999999999987 33456899999999999999999999999999984433 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHP------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
|..+|++++|+.+|++++.+.+... .++.++|.++ ...|++++|+.+|+++++
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y---------------------~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK---------------------NSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------------HHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865443 2444555554 499999999999999999
Q ss_pred -----cC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 360 -----AD-PKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 360 -----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
.+ |....++..+|.+|..+|++++|+.++++++.+.+.......
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------ 302 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------------------------------ 302 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------------------------------
Confidence 46 778899999999999999999999999999987543221111
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhccc---HHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHE---VAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKADP 508 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 508 (546)
...+..++.++...|+ +.+|+..+.+... +.....+..+|.+|...|++++|+.+|++++++..
T Consensus 303 -----------~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 303 -----------LSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0124557888888888 8888888887533 33446778999999999999999999999998654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=168.51 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--ChHHHHHHHHhhHhcCCCChHHHHHHHHHH----HHc---CCHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG--RLQSSISVLSSLLAVDPNNCDCIGNLGIAY----FQS---GDMEQS 295 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~~A 295 (546)
++|+..+.+++.++|++..+|+.++.++...| ++++++..+.+++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 68888888888889999999999999999888 999999999999999999999999999888 666 788999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH--HHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 296 AKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--VAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+.++.++++.+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~---------------------~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVD---------------------TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999998888877 677777 8999999999999999999999999
Q ss_pred HHHHcCC------hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHH
Q 009045 374 AYYLTGD------HRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIA 447 (546)
Q Consensus 374 ~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (546)
++...++ ++++++++++++..+|++..+|+.+..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~---------------------------------------- 228 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG---------------------------------------- 228 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH----------------------------------------
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH----------------------------------------
Confidence 9888887 889999999999999988766554433
Q ss_pred HHHHHHHHHhcccHHHHH-HHHHhhcc-----chhhhHHhhHHHHHHHhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 009045 448 WAGFAAVQKTHHEVAAAF-ETEENELS-----KMEECAGAGESAFLDQASAVNVAKECLLAALK-ADPKAAHIWANLANA 520 (546)
Q Consensus 448 ~~~l~~~~~~~~~~~~A~-~~~~~~l~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~ 520 (546)
++...|+...++ ....+.+. +....++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 229 ------ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 229 ------IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ------HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ------HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 333333322222 22222222 34556777888888889999999999999987 799999999887754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=172.76 Aligned_cols=219 Identities=13% Similarity=0.023 Sum_probs=173.2
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-- 309 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 309 (546)
....|.++..++.+|..++..|++++|+..|++++..+|++ ..+++.+|.+|+.+|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999999 8999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHH
Q 009045 310 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW-----------------ANL 371 (546)
Q Consensus 310 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l 371 (546)
..+++.+|.++..... .++...|++++|+..|+++++.+|++..+. +.+
T Consensus 88 ~~~a~~~lg~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSP-------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-------------cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777877761000 000018999999999999999999976655 888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.+|...|++++|+..|+++++..|++... +.++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------------------------------------~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWA-------------------------------------------DDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTH-------------------------------------------HHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchH-------------------------------------------HHHHHHH
Confidence 999999999999999999999999985421 2334444
Q ss_pred HHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~ 528 (546)
|.++...|+... .....|++++|+..|+++++..|+++ .+...++.++...++++
T Consensus 192 ~~~~~~~g~~~~----------------------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 192 MRAYIAYAEQSV----------------------RARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHTSC----------------------GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccch----------------------hhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 444443322111 01245889999999999999999984 56677888888877776
Q ss_pred HHH
Q 009045 529 SSG 531 (546)
Q Consensus 529 ~A~ 531 (546)
++.
T Consensus 250 ~~~ 252 (261)
T 3qky_A 250 GDA 252 (261)
T ss_dssp TCT
T ss_pred hhh
Confidence 544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=160.14 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=134.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.+|...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC-LLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
.|+++++++|+++.++..+|.++. ..|++++|... ++++++++|+++.++..++.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC---------------------KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH---------------------HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999888 88888887765 59999999999999999999998
Q ss_pred HcCC
Q 009045 377 LTGD 380 (546)
Q Consensus 377 ~~g~ 380 (546)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 8885
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=179.70 Aligned_cols=253 Identities=16% Similarity=0.143 Sum_probs=190.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
+|....++..+|.++...|++++|+.+|++++++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------------------------------------- 61 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS----------------------------------------- 61 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------------------------------
Confidence 677889999999999999999999999999998631100
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
-...|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+
T Consensus 62 --------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 133 (311)
T 3nf1_A 62 --------GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 133 (311)
T ss_dssp --------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 0023556778999999999999999999999999987 355678999999999999999999999
Q ss_pred HHHHHhhC--------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--------CC
Q 009045 299 FQDLILKD--------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--------DP 362 (546)
Q Consensus 299 ~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p 362 (546)
|++++++. |....++..+|.++. ..|++++|+.+|+++++. .|
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQ---------------------NQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999874 444455666666665 999999999999999998 67
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC---------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASI 433 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (546)
....++..+|.+|...|++++|+.+|++++...+.. ...+...
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------------- 244 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------------- 244 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------------
Confidence 778899999999999999999999999999865431 1111111
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 434 LREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
..+...+..+...+.+.++...+..... +....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 245 ------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 ------------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ------------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122233333344444555555555443 455577889999999999999999999999998775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=177.99 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRL---GQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS 210 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (546)
.+|++.+.++-+.-+.....+. ++.. +++++|+..|+++..+
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~a~~~------------------------------ 46 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFMK-----LFSGSDSYKFEEAADLCVQAATI------------------------------ 46 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHHH-----HHSCCSHHHHHHHHHHHHHHHHH------------------------------
T ss_pred CcHHHHHHHHHHHhCcCCCcch-----hcCCCCCccHHHHHHHHHHHHHH------------------------------
Confidence 3466677777777665322221 1122 2488888888887654
Q ss_pred CCCccccccChhhHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHH
Q 009045 211 GDNSLDKELEPEELEEILSKLKESMQSDT------RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDC 278 (546)
Q Consensus 211 g~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 278 (546)
+...|++++|+..|++++++.+ ..+.++.++|.+|..+|++++|+.+|++++.+.+.. ..+
T Consensus 47 -------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 47 -------YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp -------HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334666888888888887643 236789999999999999999999999999987643 468
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 279 IGNLGIAYFQS-GDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 279 ~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++. ..|++++|+
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~ 178 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---------------------LDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---------------------HhCCHHHHH
Confidence 99999999996 99999999999999998754 234555555555 999999999
Q ss_pred HHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 352 ECLLAALKADPKAAH-------IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 352 ~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+|++++++.|++.. ++..+|.++..+|++++|+.+|++++.++|+...
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999999887543 6789999999999999999999999999998654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=200.93 Aligned_cols=203 Identities=10% Similarity=-0.022 Sum_probs=166.9
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhH--------hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLL--------AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..+|+++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888888777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009045 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
++..+++.+|.++. ..|++++|+..|+++++++|++..++.++|.++..+|++++ +..
T Consensus 465 ~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 465 WRWRLVWYRAVAEL---------------------LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp CCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred chHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 99999999999988 89999999999999999999999999999999999999999 999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
|+++++++|++..+++++
T Consensus 523 ~~~al~~~P~~~~a~~~l-------------------------------------------------------------- 540 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGL-------------------------------------------------------------- 540 (681)
T ss_dssp HHHHHHHCTTCHHHHHHH--------------------------------------------------------------
T ss_pred HHHHHHhCCchHHHHHHH--------------------------------------------------------------
Confidence 999999999876444333
Q ss_pred HHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHh
Q 009045 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS-GKCLEKVLMVY 541 (546)
Q Consensus 468 ~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~ 541 (546)
|.++...|++++|+..|+++++++|++..+++++|.++...|+.+++ ...+++|++.+
T Consensus 541 ----------------g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 541 ----------------ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp ----------------HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred ----------------HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 33566677777777777777777777777777777777665553333 44444444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=178.01 Aligned_cols=243 Identities=16% Similarity=0.073 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.++.+|..+...|++++|+..|++++.+.+ ..+.+++.+|.+|..+|++++|+.++++++.+.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 677899999999999999999999998732 24678999999999999999999999999988665332111222
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.++. .+|.++...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+.+|+++
T Consensus 183 ~~~~--------------~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLF--------------VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 2355555999999999999999987431 3568899999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 009045 392 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 471 (546)
Q Consensus 392 l~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 471 (546)
+.+..... .+..+.++..+|.++...|++++|+..+.++
T Consensus 249 l~~~~~~~-----------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREKV-----------------------------------------PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHC-----------------------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhC-----------------------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 98532110 0112356888999999999999999999986
Q ss_pred ccc-------hhhhHHhhHHHHHHHhcc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 009045 472 LSK-------MEECAGAGESAFLDQASA---VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 472 l~~-------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (546)
+.- .....+..++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 288 l~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 542 122334567777888888 88888888873 2334456788899999999999999999999999875
Q ss_pred c
Q 009045 542 C 542 (546)
Q Consensus 542 ~ 542 (546)
.
T Consensus 367 ~ 367 (378)
T 3q15_A 367 E 367 (378)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=166.72 Aligned_cols=232 Identities=12% Similarity=0.068 Sum_probs=203.0
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccc----
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG--QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP---- 207 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (546)
.+|.+++.++|.++|++..+|+.++.++...| ++++++.++.+++..+|++. .+|+..+.++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y------------~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY------------QIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH------------HHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999 99999999999999988762 3344444444
Q ss_pred cccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH--HHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--SSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 208 ~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
..++. .+++++++.++.++++.+|.+..+|..++.++...|.++ ++++++.++++.+|.|..+|...+.+
T Consensus 118 ~~l~~--------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 118 ELNNN--------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHTTT--------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred Hhccc--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 22311 144699999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHH
Q 009045 286 YFQSGD------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAAL 358 (546)
Q Consensus 286 ~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al 358 (546)
....|. ++++++++++++..+|.+..+|..++.++. ..|+ .+....++.+++
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~---------------------~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE---------------------RFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH---------------------HTTCCGGGGHHHHHTTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH---------------------hcCCChHHHHHHHHHHH
Confidence 999998 999999999999999999999999998887 5555 444556777777
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCChhHHHHHH
Q 009045 359 KAD---PKAAHIWANLANAYYLTGDHRSSGKCLEKAAK-LEPNCMSTRYAVA 406 (546)
Q Consensus 359 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~ 406 (546)
+++ |.++.++..++.+|...|+.++|+++|+.+.+ .+|-....|...+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 766 88999999999999999999999999999997 7998877776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=170.19 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=154.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
...+|.++..++.+|..+...|++++|+..|+++++..|.+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------------------------------------- 48 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--------------------------------------- 48 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 34678889999999999999999988888888887764432
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHH--------cCCH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQ--------SGDM 292 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~g~~ 292 (546)
|..+.+++.+|.++...|++++|+..|+++++..|++ ..+++.+|.++.. .|++
T Consensus 49 ---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 113 (261)
T 3qky_A 49 ---------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDT 113 (261)
T ss_dssp ---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHH
T ss_pred ---------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhH
Confidence 1126678888888888888888888888888887754 5678888888888 8888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC---CHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---AAHIWA 369 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 369 (546)
++|+..|+++++.+|++..+...+..+...... ....++.+|.++...|++++|+..|+++++..|+ ...+++
T Consensus 114 ~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 114 RKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 888888888888888876655333222111000 0112234566667999999999999999999998 577999
Q ss_pred HHHHHHHHc----------CChHHHHHHHHHHHhcCCCChhHH
Q 009045 370 NLANAYYLT----------GDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 370 ~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
.+|.+|..+ |++++|+..|+++++.+|+++.+.
T Consensus 190 ~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 190 GAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 999999987 899999999999999999987544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-19 Score=173.03 Aligned_cols=281 Identities=14% Similarity=0.006 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++..+|.++...|++++|+..+++++...|... +
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~--------------------------------------- 49 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----F--------------------------------------- 49 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----H---------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----h---------------------------------------
Confidence 35567777888888888888888888877533110 0
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC------DCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.....++..+|.++...|++++|+..+++++.+.+... .++..+|.++...|++++|+..+++++.
T Consensus 50 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 121 (373)
T 1hz4_A 50 --------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121 (373)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00124677889999999999999999999998755432 3478899999999999999999999998
Q ss_pred hCC--------CCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 009045 305 KDQ--------NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANL 371 (546)
Q Consensus 305 ~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 371 (546)
..+ .....+..+|.++. ..|++++|+.++++++...+. ...++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 122 LINEQHLEQLPMHEFLVRIRAQLLW---------------------AWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHhccccCcHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 753 22334555666555 899999999999999998775 35678899
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.++...|++++|..++++++.+.+.......... ......
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 221 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS---------------------------------------NANKVR 221 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH---------------------------------------HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH---------------------------------------HHHHHH
Confidence 99999999999999999999887443211000000 012234
Q ss_pred HHHHHhcccHHHHHHHHHhhccchh------hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Q 009045 452 AAVQKTHHEVAAAFETEENELSKME------ECAGAGESAFLDQASAVNVAKECLLAALKADPK------AAHIWANLAN 519 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~ 519 (546)
+.++...|++++|...+.+.+...+ ...+..+|.++...|++++|+..+++++...+. ...++..+|.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4557788999999999988665332 124568899999999999999999999876442 2357888999
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcc
Q 009045 520 AYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
++...|++++|...|++++.+...
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=160.81 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++.++..|..+...|++++|+..|+++++.+|++. .+++..+. ..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~~-----~~----------------- 48 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------EMYYWTNV-----DK----------------- 48 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH------------HHHHHHHS-----CT-----------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHhhh-----cc-----------------
Confidence 567788899999999999999999999999865431 11111110 00
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
.....+...+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus 49 -------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 49 -------NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp -------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred -------hhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 0111234556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 389 (546)
..+++.+|.++... ..+....+...+.+++...|. ..+++.+|.++...|++++|+.+|+
T Consensus 122 ~~a~~~lg~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 122 LAANIFLGNYYYLT-------------------AEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------hHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998732 233466778888887754332 3467889999999999999999999
Q ss_pred HHHhcCCCCh
Q 009045 390 KAAKLEPNCM 399 (546)
Q Consensus 390 ~al~~~p~~~ 399 (546)
++++++|+..
T Consensus 182 ~al~l~P~~~ 191 (208)
T 3urz_A 182 KVILRFPSTE 191 (208)
T ss_dssp HHTTTSCCHH
T ss_pred HHHHhCCCHH
Confidence 9999999753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=178.03 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=170.7
Q ss_pred ChhhHHHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc--------CCCChHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQ--------SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV--------DPNNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 283 (546)
..|++++|+.+|+++++ ..|....++..+|.++...|++++|+.+|++++.+ .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34455666666666665 23777889999999999999999999999999987 356678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHH
Q 009045 284 IAYFQSGDMEQSAKCFQDLILK--------DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.+|...|++++|+.+|++++.+ +|....++..+|.++. ..|++++|+.+|+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~ 151 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------------NQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------TTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHH
Confidence 9999999999999999999988 3555666777777776 8999999999999
Q ss_pred HHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHH
Q 009045 356 AALKA--------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 427 (546)
Q Consensus 356 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 427 (546)
+++++ .|....++..+|.++..+|++++|+.+|++++++.+....
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------------------------- 204 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF--------------------------- 204 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 99998 7777889999999999999999999999999987442110
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 428 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
....+.....|..++..+...+... ....+..+...++......
T Consensus 205 ----------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 205 ----------GSVNGDNKPIWMHAEEREESKDKRR--------------------------DSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp ----------SSCCSSCCCHHHHHHHHHHTTCCCC--------------------------C------------CCCCCC
T ss_pred ----------CCcchhHHHHHHHHHHHHhcCCchh--------------------------HHHHHHHHHHHHHhcCCCC
Confidence 0001112223333333332222111 1112344444444444445
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 009045 508 PKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (546)
|....++..+|.+|...|++++|+.+|++++++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666778888888888888888888888888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=161.47 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGN----------------LGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+..++..|..++..|++++|+..|++++..+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567777888888888888888888888888887777777 45555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
++|++..++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+|...|+.+
T Consensus 83 ~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~-- 139 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQV---------------------CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE-- 139 (208)
T ss_dssp HCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH--
Confidence 55544444444444444 4444444554444444444444444444444444333211
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
...+
T Consensus 140 ----------------------------------------------------------------------------~~~~ 143 (208)
T 3urz_A 140 ----------------------------------------------------------------------------KKKL 143 (208)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1222
Q ss_pred HHHHHhhccchh-hhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 465 FETEENELSKME-ECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 465 ~~~~~~~l~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
...+.+.+.+.+ ..+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 222222222222 1345566778888999999999999999999974 344445554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-18 Score=175.94 Aligned_cols=367 Identities=12% Similarity=0.036 Sum_probs=261.1
Q ss_pred cchhhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHH---------HH
Q 009045 89 VAEVEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLL---------GL 159 (546)
Q Consensus 89 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~l---------g~ 159 (546)
......+.+...|....++ ..+++++ ..|......... .. .+..-+++.++....-+... |.
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKiv-l~~s~fs~n~~L-----qn--lLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIV-LDNSVFSEHRNL-----QN--LLILTAIKADRTRVMEYINRLDNYDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHH-cCCCcccccHHH-----HH--HHHHHHHHhChhhHHHHHHHhhhccHHHHHH
Confidence 3344566677777777777 8888888 444311111111 11 14445566666665555554 99
Q ss_pred HHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc
Q 009045 160 MYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT 239 (546)
Q Consensus 160 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p 239 (546)
++...|.+++|...|+++-... . ....+ +...+++++|+++++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~----------~---A~~VL-----------------ie~i~nldrAiE~Aerv----- 1102 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNT----------S---AVQVL-----------------IEHIGNLDRAYEFAERC----- 1102 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHH----------H---HHHHH-----------------HHHHhhHHHHHHHHHhc-----
Confidence 9999999999999999974220 0 01111 12456779999998866
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .....+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHH
Confidence 55889999999999999999999999886 789999999999999999999999999999887542 112234444
Q ss_pred HHHhhCccc-------cccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 320 LLCKYGSVL-------AGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 320 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
|.....-.. .....+..+|..+...|+|++|+.+|.++ ..|..+|.+|..+|++++|++.++++
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 443311000 01234556899999999999999999995 47899999999999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL 472 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 472 (546)
.+..+|...+..++.... +..+.... .. ....+..+..++..|...|.+++|+..++.++
T Consensus 1248 ----~n~~aWkev~~acve~~E--------f~LA~~cg-------l~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 ----NSTRTWKEVCFACVDGKE--------FRLAQMCG-------LH-IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ----CCHHHHHHHHHHHhhhhH--------HHHHHHHH-------Hh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345666655554432111 11111100 00 12345567788999999999999999999876
Q ss_pred cch--hhhHHhhHHHHHH--HhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCChHHHHHHH
Q 009045 473 SKM--EECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLANAYYLTGDHRSSGKCL 534 (546)
Q Consensus 473 ~~~--~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (546)
.-. ....+..+|.+|. +-++..+++++|...+.+.| +++..|..+..+|.+-|+++.|+..+
T Consensus 1308 ~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1308 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 543 3345555666665 56778999999999888877 78889999999999999999999433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=171.64 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=164.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc
Q 009045 158 GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS 237 (546)
Q Consensus 158 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~ 237 (546)
|.+|...|++++|+.+|++++++.+.. .+....+.++.++|.++..+|+ +++|+.+|++++++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~a~~~~~lg~~~~~~g~-----------~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA------GNEDEAGNTYVEAYKCFKSGGN-----------SVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
Confidence 778999999999999999999986542 1222345677778877655554 59999999999998
Q ss_pred Cccc------HHHHHHHHHHHHHc-CChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 238 DTRQ------AVVWNTLGLILLKS-GRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 238 ~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+.. ..++.++|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++.
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7753 56899999999996 99999999999999998754 46789999999999999999999999999
Q ss_pred hCCCCHH-------HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH-----HHHHHH
Q 009045 305 KDQNHPA-------ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-----IWANLA 372 (546)
Q Consensus 305 ~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~ 372 (546)
+.|++.. .+..+|.++. ..|++++|+.+|+++++++|.... .+..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQL---------------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHhcCCcccHHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 9987654 3455555555 899999999999999999998654 344566
Q ss_pred HHHH--HcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 373 NAYY--LTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 373 ~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..+. ..+++++|+..|++++.++|.....+
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 6664 46789999999999999988665443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=169.69 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.++.+|..+...|++++|+.+|++++++.+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------------- 135 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS----------------------------------------------- 135 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-----------------------------------------------
Confidence 567788888999999999999999887632110
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 233 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 233 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
..+..+.+++.+|.+|...|++++|+.++++++.+.+. ...++..+|.+|..+|++++|+.+|++++.+
T Consensus 136 ----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 136 ----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 01234668889999999999999999999999987442 2457889999999999999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 009045 306 DQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK-----ADPKAAHIWANLANA 374 (546)
Q Consensus 306 ~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~ 374 (546)
.+.. ..++.++|. ++...|++++|+.+|+++++ .+|....++..+|.+
T Consensus 212 ~~~~~~~~~~~~~~~~lg~---------------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIAN---------------------SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH---------------------HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---------------------HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 5421 123444444 44599999999999999999 788889999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 009045 375 YYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAV 454 (546)
Q Consensus 375 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (546)
+..+|++++|+.++++++.+.+......+ ...+..++.+
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------------------------~~~~~~l~~l 309 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFY-----------------------------------------KELFLFLQAV 309 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCH-----------------------------------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHH-----------------------------------------HHHHHHHHHH
Confidence 99999999999999999998765321111 1123445556
Q ss_pred HHhccc---HHHHHHHHHhhcc-chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC
Q 009045 455 QKTHHE---VAAAFETEENELS-KMEECAGAGESAFLDQASAVNVAKECLLAALKAD 507 (546)
Q Consensus 455 ~~~~~~---~~~A~~~~~~~l~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 507 (546)
+...++ +.+|+..+.+... +.....+..+|.+|...|++++|+.+|+++++..
T Consensus 310 y~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 666666 7788887776332 3344567789999999999999999999998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=195.28 Aligned_cols=188 Identities=14% Similarity=0.062 Sum_probs=164.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------HHhcccchhccchhhHHHHHHHhhccccccccCCCccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAE--------EILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLD 216 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 216 (546)
..+|+++.+++..| ...|++++|+..|++++ +.+|++ ..++..+|.++
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~------------~~~~~~~a~~~--------- 443 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES------------VELPLMEVRAL--------- 443 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC------------SHHHHHHHHHH---------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc------------hhHHHHHHHHH---------
Confidence 35788888888877 78999999999999999 665543 23445555554
Q ss_pred cccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHH
Q 009045 217 KELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 217 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
+..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++ +
T Consensus 444 --~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 444 --LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp --HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred --HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H
Confidence 4556669999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 376 (546)
..|+++++++|++..+++++|.++. ..|++++|+..|+++++++|++..++.++|.++.
T Consensus 521 ~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 521 KFYQTVWSTNDGVISAAFGLARARS---------------------AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp CHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 9999999999999999999999888 8999999999999999999999999999999998
Q ss_pred HcCC
Q 009045 377 LTGD 380 (546)
Q Consensus 377 ~~g~ 380 (546)
..++
T Consensus 580 ~~~~ 583 (681)
T 2pzi_A 580 SGRS 583 (681)
T ss_dssp ----
T ss_pred ccCC
Confidence 8666
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-19 Score=156.15 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=158.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA---ALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 314 (546)
.+..++.+|..++..|++++|+..|++++...|++. .+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467889999999999999999999999999998764 68999999999999999999999999999999875 677
Q ss_pred HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 315 NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
.+|.++. ..+. .....+..++.++...|++++|+..|+++++.
T Consensus 83 ~~g~~~~---------------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 83 MRGLTNM---------------------ALDD----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHH---------------------HHHC------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH---------------------hhhh----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 7777776 3221 11223456777888899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc
Q 009045 395 EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK 474 (546)
Q Consensus 395 ~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 474 (546)
+|++..+...... ++.+..
T Consensus 126 ~P~~~~a~~a~~~-------------------------------------------l~~~~~------------------ 144 (225)
T 2yhc_A 126 YPNSQYTTDATKR-------------------------------------------LVFLKD------------------ 144 (225)
T ss_dssp CTTCTTHHHHHHH-------------------------------------------HHHHHH------------------
T ss_pred CcCChhHHHHHHH-------------------------------------------HHHHHH------------------
Confidence 9998765432211 011100
Q ss_pred hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccc
Q 009045 475 MEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRSSGKCLEKVLMVYCSS 544 (546)
Q Consensus 475 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 544 (546)
......+.+|.+|...|++++|+..|+++++..|+++ .+++.+|.+|..+|++++|+..++++....+.+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0011234567799999999999999999999999985 789999999999999999999999888776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=154.56 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=128.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
.||.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.++..+|.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~----- 76 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE----- 76 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCChhHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC-LEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l 405 (546)
..|++++|+.+|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++...
T Consensus 77 ----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 77 ----------------LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ----------------HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 899999999999999999999999999999999999999887765 599999999999887655
Q ss_pred HH
Q 009045 406 AV 407 (546)
Q Consensus 406 ~~ 407 (546)
+.
T Consensus 141 ~~ 142 (150)
T 4ga2_A 141 EQ 142 (150)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=149.91 Aligned_cols=138 Identities=19% Similarity=0.274 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
. ..|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|++.
T Consensus 87 ~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 87 V---------------------QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp H---------------------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred H---------------------HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 6 778888888888888888888888888888888888888888888888888877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-20 Score=169.37 Aligned_cols=238 Identities=14% Similarity=0.152 Sum_probs=177.2
Q ss_pred cccCCCCchHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHH
Q 009045 126 SGLGTSSSSREEKGLVHVARK--------MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLV 197 (546)
Q Consensus 126 ~~~g~~~~~~a~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 197 (546)
...|.. .+|+..|+++++. +|..+.++..+|.++...|++++|+.+|++++++..... .++.....
T Consensus 12 ~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~ 85 (283)
T 3edt_B 12 SGLVPR--GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL----GKDHPAVA 85 (283)
T ss_dssp -CCSCS--SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CTTCHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc----CCcchHHH
Confidence 344555 7777777777763 366789999999999999999999999999999842110 01122334
Q ss_pred HHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhH
Q 009045 198 QIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLL 269 (546)
Q Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 269 (546)
.++..+|.++. ..|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++
T Consensus 86 ~~~~~l~~~~~-----------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 86 ATLNNLAVLYG-----------KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHH-----------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667777654 455669999999999987 57888999999999999999999999999999
Q ss_pred hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhhCccccccc
Q 009045 270 AV--------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK---------DQNHPAALINYAALLLCKYGSVLAGAG 332 (546)
Q Consensus 270 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (546)
.+ .|....++..+|.++..+|++++|+.+|++++++ .+.....+..++......
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 225 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK--------- 225 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT---------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC---------
Confidence 98 6777889999999999999999999999999987 344455565555554411
Q ss_pred cccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 009045 333 ANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE 395 (546)
Q Consensus 333 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 395 (546)
........+..+...++......|....++..+|.+|..+|++++|+.+|+++++..
T Consensus 226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 226 ------DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ------CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 111123345566666665555567778899999999999999999999999998753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-19 Score=152.78 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=153.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 378 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 378 (546)
+++++...|.+...+..+|.++. ..|++++|+.+++++++..|.+..++..+|.++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALD---------------------NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHhHHHHHHHHHHHH---------------------HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 99999999999999998888887 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCChh
Q 009045 379 GDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 379 g~~~~A~~~~~~al~~~p~~~~ 400 (546)
|++++|+.+++++++..|++..
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCG
T ss_pred CCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999887753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=142.13 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 233 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 233 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
++..++|+.+..+..+|..+++.|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457888888999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
++.+|.++. ..|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~---------------------~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLV---------------------AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888887 888899999999999999999988888888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=153.42 Aligned_cols=211 Identities=11% Similarity=0.006 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
++..++.+|..+...|++++|+..|+++++..|.+.. ...+++.+|.++ +..|++++|+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~a~~~lg~~~-----------~~~~~~~~A~~ 62 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY---------SQQVQLDLIYAY-----------YKNADLPLAQA 62 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT---------HHHHHHHHHHHH-----------HHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHH-----------HhcCCHHHHHH
Confidence 4677888888888888888888888888887654310 012222333332 22233355555
Q ss_pred HHHHHHhcCcccHH---HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 230 KLKESMQSDTRQAV---VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 230 ~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
.|+++++.+|++.. +++.+|.++...|.. ....+..++..+...|++++|+..|+++++..
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 55555555554432 444555554443211 01112223333334678888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChHH
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA---HIWANLANAYYLTGDHRS 383 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~ 383 (546)
|++..++..+..+..... ........+|.++...|++++|+..|+++++..|+++ .++..+|.+|..+|++++
T Consensus 127 P~~~~a~~a~~~l~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKD----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp TTCTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 887755433222111000 0011223467788899999999999999999999976 689999999999999999
Q ss_pred HHHHHHHHHhcCCCChh
Q 009045 384 SGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 384 A~~~~~~al~~~p~~~~ 400 (546)
|+..++++....|++..
T Consensus 203 A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 203 AEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHhhCCCchh
Confidence 99999999999887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-17 Score=157.05 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccc
Q 009045 134 SREEKGLVHVARKMPKNA-----HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPE 208 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (546)
..+...+++++...|.+. .++..+|.++...|++++|+..+++++.+.+.. ++....+.++..++.++.
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------DVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHH
Confidence 677778888888776543 367899999999999999999999999987653 222233445556666654
Q ss_pred ccCCCccccccChhhHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-----
Q 009045 209 SSGDNSLDKELEPEELEEILSKLKESMQSD--------TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN----- 275 (546)
Q Consensus 209 ~~g~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----- 275 (546)
..|++++|+..++++++.. |....++..+|.++...|++++|+..+++++.+.+..
T Consensus 105 -----------~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 105 -----------AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred -----------HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 4555699999999999865 3456678889999999999999999999999987653
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
..++..+|.++...|++++|...+++++.+.+. ....+....... .+.++...|++++|...
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV----------------RVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH----------------HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH----------------HHHHHHHCCCHHHHHHH
Confidence 457889999999999999999999999987432 222222110000 12234489999999999
Q ss_pred HHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHH
Q 009045 354 LLAALKADPKA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNE 429 (546)
Q Consensus 354 ~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 429 (546)
+++++...+.. ...+..+|.++...|++++|...+++++...+......
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~--------------------------- 290 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS--------------------------- 290 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------------------
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh---------------------------
Confidence 99999877653 34678899999999999999999999987654322110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 009045 430 MASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPK 509 (546)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 509 (546)
....++..++.++...|++++|...+.+.+...... +....+...| +.....+++.+...|-
T Consensus 291 -------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~---g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 291 -------------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT---GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred -------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 011356677888888888888888888766533221 1112344444 5666777777777765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-17 Score=151.19 Aligned_cols=160 Identities=12% Similarity=0.070 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC--H
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 292 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 292 (546)
++|+..+.+++..+|++..+|+.++.++...+. +++++.++..++..+|++..+|...+.++..+|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999988776 7899999999999999999999999999999994 8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
++++.++.+++..+|.+..+|...+.++. ..|. ++++++++.++++.+|.+..+|..+
T Consensus 127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~---------------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R 185 (331)
T 3dss_A 127 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999998887 6677 6999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 372 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 372 ~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
+.++... +.++++++++.+++..+|++..+|+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~ 233 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 233 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999887 568999999999999999999888644
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-17 Score=150.64 Aligned_cols=243 Identities=11% Similarity=0.058 Sum_probs=199.8
Q ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhh
Q 009045 133 SSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ----------PLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHA 202 (546)
Q Consensus 133 ~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 202 (546)
..+|.+++..++..+|++..+|+.++.++...|. +++++.++..++..+|++ ..+|..
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------------y~aW~h 113 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------YGTWHH 113 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------------HHHHHH
Confidence 3678899999999999999999999999988876 789999999999998876 245666
Q ss_pred ccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-hHHHHHHHHhhHhcCCCChHHHHH
Q 009045 203 QCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGR-LQSSISVLSSLLAVDPNNCDCIGN 281 (546)
Q Consensus 203 ~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 281 (546)
.+.++..+|.. .+++++.++.++++.+|.+..+|..++.+....|. ++++++++.++++.+|.+..+|..
T Consensus 114 R~wlL~~l~~~---------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 114 RCWLLSRLPEP---------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp HHHHHHHCSSC---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHhccCcc---------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 66666555531 36999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 282 LGIAYFQS--------------GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 282 la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
++.++..+ +.++++++++.+++..+|++..+|+.+..++....+. ..++ ....+.+
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~--------~~~~--~~~~~~l 254 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR--------CELS--VEKSTVL 254 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG--------GGCC--HHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc--------cccc--hHHHHHH
Confidence 99999887 5689999999999999999999998776666522110 0011 2245678
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 348 NVAKECLLAALKADPKAAHIWANLANAYY---LTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
+++++.+++++++.|++.-.+..++.+.. ..|..++....+.+.++++|.....|..+.
T Consensus 255 ~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 255 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 99999999999999998655444443332 357888999999999999998776665443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=137.16 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=112.6
Q ss_pred hhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 267 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
++..++|+.+..+..+|..|+..|++++|+..|+++++++|.+..++..+|.++. ..|+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------------~~~~ 62 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT---------------------KLME 62 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH---------------------hhcc
Confidence 4556899999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus 63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=173.76 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=141.2
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 300 (546)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT-- 378 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 378 (546)
++++++|++..++..+|.++. ..|++++|+..|+++++.+|++..++..+|.++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALE---------------------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999888 899999999999999999999999999999999999
Q ss_pred -CChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 379 -GDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 379 -g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
|++++|+..|+++++.+|++...+..++
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999887776554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-17 Score=148.83 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG-RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS-G-DMEQSAKCFQD 301 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~ 301 (546)
++|+..+.+++..+|++..+|+.++.++...| .+++++..+.+++..+|++..+|...+.++..+ + ++++++.++.+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 67899999999999999999999999999999 599999999999999999999999999999998 8 99999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHH--------HHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 302 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVN--------VAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 302 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
++..+|.+..+|...+.++. ..|.++ ++++++.++++.+|.+..+|..++.
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~---------------------~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYS---------------------HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHH---------------------HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHH---------------------HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999998887 444444 9999999999999999999999999
Q ss_pred HHHHcCC-------hHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 374 AYYLTGD-------HRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 374 ~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++...++ ++++++++++++..+|++..+|+.+..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999987 799999999999999999999876544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-16 Score=165.80 Aligned_cols=302 Identities=13% Similarity=0.079 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 149 KNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 149 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
.+++---.....|...|.+.+|++.|++++ +.|..- . .+++.- .. ..++.+. ...++..+.+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~f-s-~n~~Lq---nl-Li~tAIk-----------aD~~Rv~eyI 1044 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVF-S-EHRNLQ---NL-LILTAIK-----------ADRTRVMEYI 1044 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcc-c-ccHHHH---HH-HHHHHHH-----------hChhhHHHHH
Confidence 345555667788889999999999999998 433310 0 011111 00 1111111 1122333333
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..+++.+ .-.+|.++...|.+++|...|+++- . ....+...+...|++++|+++++++ +
T Consensus 1045 ~kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~---~~~A~~VLie~i~nldrAiE~Aerv-----n 1103 (1630)
T 1xi4_A 1045 NRLDNYD---------APDIANIAISNELFEEAFAIFRKFD----V---NTSAVQVLIEHIGNLDRAYEFAERC-----N 1103 (1630)
T ss_pred HHhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----C---HHHHHHHHHHHHhhHHHHHHHHHhc-----C
Confidence 3333221 1236888888999999999998862 1 1112233444788888888888865 5
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCL 388 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 388 (546)
.+.+|..+|.++. ..|++++|+..|.++ +++..|..+|.++.+.|++++|+++|
T Consensus 1104 ~p~vWsqLAKAql---------------------~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQL---------------------QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred CHHHHHHHHHHHH---------------------hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888888877 888899999998775 67888888999999999999999999
Q ss_pred HHHHhcCCCC-hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHH
Q 009045 389 EKAAKLEPNC-MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467 (546)
Q Consensus 389 ~~al~~~p~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 467 (546)
..+.+..++. .......+...+++. . .+...+. .+ +...|..+|..+...|++++|...
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~rl-------e-------ele~fI~-----~~-n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTNRL-------A-------ELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhcCH-------H-------HHHHHHh-----CC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888877543 222222222221110 0 0111111 11 224566788888888888888888
Q ss_pred HHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHH
Q 009045 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP-------------------------KAAHIWANLANAYY 522 (546)
Q Consensus 468 ~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~ 522 (546)
|.++ ..|..+|.+|.++|++++|++.++++....+ .+++.+..++..|.
T Consensus 1218 Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1218 YNNV------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 1291 (1630)
T ss_pred HHhh------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHH
Confidence 8874 4677888888888888888888887744332 23455667888899
Q ss_pred hcCChHHHHHHHHHHHHHh
Q 009045 523 LTGDHRSSGKCLEKVLMVY 541 (546)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~ 541 (546)
..|.+++|+.++++++.+-
T Consensus 1292 ~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC
Confidence 9999999999999997653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.8e-18 Score=156.87 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=134.5
Q ss_pred HcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccC-hhhHHHHHHHHHHHHhcCccc
Q 009045 163 RLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE-PEELEEILSKLKESMQSDTRQ 241 (546)
Q Consensus 163 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 241 (546)
..|++++|..+++++.+..+.. ++. .+++++|+..|.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------------------------------~~~~~~~~~~A~~~~~~a------- 42 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------------------------------FMKWKPDYDSAASEYAKA------- 42 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------------------------------SSSCSCCHHHHHHHHHHH-------
T ss_pred ccchHHHHHHHHHHHHHHcccc---------------------------------ccCCCCCHHHHHHHHHHH-------
Confidence 3578899999999998874310 011 36679999888876
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------ 309 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 309 (546)
|.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 43 -------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 43 -------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred -------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 678889999999999999999986532 5688999999999999999999999999885432
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA------AHIWANLANAYYLTGDHRS 383 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~ 383 (546)
..++.++|.++ .. |++++|+.+|++++++.+.. ..++.++|.+|..+|++++
T Consensus 116 a~~~~~lg~~~---------------------~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 116 AMALDRAGKLM---------------------EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp HHHHHHHHHHH---------------------TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH---------------------Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 22344444444 47 99999999999999987653 5788999999999999999
Q ss_pred HHHHHHHHHhcCCCCh
Q 009045 384 SGKCLEKAAKLEPNCM 399 (546)
Q Consensus 384 A~~~~~~al~~~p~~~ 399 (546)
|+.+|++++.+.|++.
T Consensus 174 A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 174 AAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999876543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=145.53 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHH-HcCCHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF-QSGDMEQSAKC 298 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~ 298 (546)
..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKR 96 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHH
Confidence 445557777777777777888899999999999999999999999999999999 7777766665533 33344568999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYY 376 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 376 (546)
|+++++.+|++..+++.+|.++. ..|++++|+..|+++++.+|+. ..++..+|.++.
T Consensus 97 ~~~al~~~P~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 97 LEQELAANPDNFELACELAVQYN---------------------QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 99999999999999999998888 8999999999999999999875 669999999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 009045 377 LTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~ 393 (546)
.+|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 99999999999998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=140.59 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
-.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.+|..+|++++|+.+|+++++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34444566777778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
++|+++.+++++|.++. ..|++++|+.+|++++++.|+..
T Consensus 99 l~P~~~~~~~~lg~~~~---------------------~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQL---------------------RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888887777776 77888888888888888877654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=144.20 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=96.9
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++.....++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444556778888888888888888888888888888888888888888888888888888888888888 6655444443
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+... ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 82 ~~~~--------------------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 82 LELH--------------------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHH--------------------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHH--------------------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3221 1122234667777777777777777777777777777777777777777766664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=152.07 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=145.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChh
Q 009045 143 VARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPE 222 (546)
Q Consensus 143 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (546)
+...-|.+...++.+|..+...|++++|+..|+++++.
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------------------------ 146 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL------------------------------------------ 146 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------------------------------
Confidence 33445888888999999988888888888888877765
Q ss_pred hHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 223 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+|+++.+++.+|.++...|++++|+..|++++..+|+....+...+..+...++.++|+..|+++
T Consensus 147 ---------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a 211 (287)
T 3qou_A 147 ---------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQ 211 (287)
T ss_dssp ---------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ---------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 56667888888888888888888888888888888877777777777788888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYLTGD 380 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 380 (546)
+..+|++..+++.+|.++. ..|++++|+..|+++++.+|++ ..++..++.++...|+
T Consensus 212 l~~~P~~~~~~~~la~~l~---------------------~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 212 VAENPEDAALATQLALQLH---------------------QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HhcCCccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 8888888888888888887 8888888999898888888887 7888888999988898
Q ss_pred hHHHHHHHHHHHh
Q 009045 381 HRSSGKCLEKAAK 393 (546)
Q Consensus 381 ~~~A~~~~~~al~ 393 (546)
.++|+..|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8888888888775
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=143.28 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=112.8
Q ss_pred HHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchH
Q 009045 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340 (546)
Q Consensus 261 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 340 (546)
+-..+++++.++|++..+++.+|.+++..|++++|+..|++++.++|+++.+|..+|.++.
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~------------------- 81 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ------------------- 81 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------
Confidence 4456788899999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 341 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+..
T Consensus 82 --~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 --IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp --HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred --HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999999999999999999999999999999999865
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-19 Score=168.00 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.+|.+.+++. +++.+|..+|.++...|++++|++.|.++-.. ..+...+..
T Consensus 20 d~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~-----------------~~y~~V~~~------- 70 (449)
T 1b89_A 20 DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP-----------------SSYMEVVQA------- 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH-----------------HHHHHHHHH-------
Confidence 5555555555 33458888888888888888888888664211 111222222
Q ss_pred ccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 214 SLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+...|++++|+.+++.+++..++ +.+...++.+|.+.|++.++.++++. |+ ..+|..+|..+...|+|+
T Consensus 71 ----ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 71 ----ANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp -------------------------------------------CHHHHTTTTTC-----C-----------------CTT
T ss_pred ----HHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHH
Confidence 23456668888877777775333 66677788888888888887776642 43 357888888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|..+|.++ ..|..++.++. ++|++++|++.++++ .++.+|...+.
T Consensus 140 eA~~~Y~~a--------~n~~~LA~~L~---------------------~Lg~yq~AVea~~KA-----~~~~~Wk~v~~ 185 (449)
T 1b89_A 140 AAKLLYNNV--------SNFGRLASTLV---------------------HLGEYQAAVDGARKA-----NSTRTWKEVCF 185 (449)
T ss_dssp THHHHHHHT--------TCHHHHHHHHH---------------------TTTCHHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred HHHHHHHHh--------hhHHHHHHHHH---------------------HhccHHHHHHHHHHc-----CCchhHHHHHH
Confidence 888888765 23555666555 788888888888887 35778888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...|+++.|..+... +..+|++ ...+..
T Consensus 186 aCv~~~ef~lA~~~~l~-L~~~ad~-------------------------------------------------l~~lv~ 215 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLH-IVVHADE-------------------------------------------------LEELIN 215 (449)
T ss_dssp HHHHTTCHHHHHHTTTT-TTTCHHH-------------------------------------------------HHHHHH
T ss_pred HHHHcCcHHHHHHHHHH-HHhCHhh-------------------------------------------------HHHHHH
Confidence 88888888888555543 2233321 223455
Q ss_pred HHHhcccHHHHHHHHHhhccc--hhhhHHhhHHHHHH--HhccHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhc
Q 009045 454 VQKTHHEVAAAFETEENELSK--MEECAGAGESAFLD--QASAVNVAKECLLAALKADP-----KAAHIWANLANAYYLT 524 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~ 524 (546)
.|.+.|.+++|+..++..+.. .....+..+|.+|. +.++..+.++.|...+.+.| .++..|..+..+|...
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777777777777775543 33345555665555 45566777777776666666 6667777777777777
Q ss_pred CChHHHHHHH
Q 009045 525 GDHRSSGKCL 534 (546)
Q Consensus 525 g~~~~A~~~~ 534 (546)
++++.|+...
T Consensus 296 ~e~d~A~~tm 305 (449)
T 1b89_A 296 EEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 7777776544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=151.17 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=116.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.|.+...++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 38888899999999999999999999999999999999999999999999999999999999999988886554444444
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..+. ..++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 193 ~~l~---------------------~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 193 IELL---------------------XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHH---------------------HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHH---------------------hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 4444 6667777888888888888888888888888888888888888888888888776
Q ss_pred C
Q 009045 398 C 398 (546)
Q Consensus 398 ~ 398 (546)
+
T Consensus 252 ~ 252 (287)
T 3qou_A 252 A 252 (287)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=158.33 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=130.4
Q ss_pred cccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHH
Q 009045 122 DGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSL 196 (546)
Q Consensus 122 ~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 196 (546)
...|..+|.. +...|+++|.++ +++..+...+..+...|++++|+.+++.+++..++
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~------------- 93 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------------- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-------------
Confidence 3477777766 456777777653 57779999999999999999999999999875221
Q ss_pred HHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh
Q 009045 197 VQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 276 (546)
..+...++.+|. +.|++.++..+++. |+ ..+|..+|..+...|+|++|+.+|.++
T Consensus 94 ~~i~~~Li~~Y~-----------Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 94 SYVETELIFALA-----------KTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred chhHHHHHHHHH-----------HhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 122334444544 44556888877742 43 469999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..|..+|.++.++|++++|++.|+++ .++.+|...+.++. ..|+++.|..+...
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv---------------------~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV---------------------DGKEFRLAQMCGLH 202 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH---------------------HTTCHHHHHHTTTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH---------------------HcCcHHHHHHHHHH
Confidence 47999999999999999999999999 47888988888887 89999999887775
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhc
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILRE 436 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (546)
+..+|+ -...+..+|...|++++|+.++++++.+++.+...+..++.....-.. +.+... .+.+..
T Consensus 203 -L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p------~k~~eh----l~~~~~ 268 (449)
T 1b89_A 203 -IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP------QKMREH----LELFWS 268 (449)
T ss_dssp -TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH------HHHHHH----HHHHST
T ss_pred -HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH------HHHHHH----HHHHHH
Confidence 334544 355688999999999999999999999999988888777654321100 000000 011111
Q ss_pred CCCCCC-----CcHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 009045 437 GDPVQI-----EPPIAWAGFAAVQKTHHEVAAAFETEENE 471 (546)
Q Consensus 437 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 471 (546)
...+.+ +.+..|..+..+|...++++.|+......
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 111111 23456777777887778887777766553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=145.23 Aligned_cols=247 Identities=12% Similarity=0.039 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccccccc-C
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLG-QPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESS-G 211 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g 211 (546)
.+|.+.+.+++..+|++..+|+.++.++...| .+++++.++++++..+|++ ..+|...+.++..+ +
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------------y~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------------YQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999999 5999999999999998876 24555566655544 4
Q ss_pred CCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChH--------HHHHHHHhhHhcCCCChHHHHHHH
Q 009045 212 DNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQ--------SSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 212 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la 283 (546)
. ++++++.++.++++.+|.+..+|..++.++...|.++ +++++++++++.+|.|..+|..++
T Consensus 139 ~----------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 139 Q----------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp S----------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred C----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0 2389999999999999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc-cccccccchHHHhhcCHHHHHHHHH
Q 009045 284 IAYFQSGD-------MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG-AGANTGEGACLDQASAVNVAKECLL 355 (546)
Q Consensus 284 ~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~ 355 (546)
.++..++. ++++++++++++..+|++..+|..+..++...+...... ...+-.-|... .-....-.+.+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 286 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL--NPDIETVEAFGF 286 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------------C
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc--cccchhHHHHHH
Confidence 99999987 799999999999999999999998887776322110000 00000000000 000122222222
Q ss_pred HHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCChhHHHH
Q 009045 356 AALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAA-KLEPNCMSTRYA 404 (546)
Q Consensus 356 ~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~ 404 (546)
..+.. .+.++.++..++.+|...|+.++|+++|+... +.+|-....|..
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 22222 25678899999999999999999999999987 667765555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=153.56 Aligned_cols=160 Identities=12% Similarity=0.138 Sum_probs=129.2
Q ss_pred ChhhHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTR------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYF 287 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 287 (546)
..|++++|+..|.+++++.+. ...++..+|.+|..+|++++|+.+|++++.+.+.. ..++.++|.+|.
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345567777777777665442 25588899999999999999999999999884322 467889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 288 QSGDMEQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
. |++++|+.+|++++.+.+.. ..++.++|.++. ..|++++|+.+|++++.+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV---------------------RQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHH
Confidence 9 99999999999999987653 234455555554 9999999999999999986
Q ss_pred CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 362 PKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 362 p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
|.+ ..++..+|.++..+|++++|+.+|++++ ++|......
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 543 3478889999999999999999999999 999876544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=136.54 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=94.6
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 367 (546)
++.+++.+|.++. ..|++++|+..|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLL---------------------QXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888877777776 7788888888888888877765544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-19 Score=167.86 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHH----HHhcCcccHHHHHHHHHHHH------------HcCChHHHHHHHHhhHhcCCCChHHHHHHH
Q 009045 220 EPEELEEILSKLKE----SMQSDTRQAVVWNTLGLILL------------KSGRLQSSISVLSSLLAVDPNNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 283 (546)
..+.+++|+..+.+ ++.+.|.. +|..+|.... .++++++|+..|++++..+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 46688999999988 88888876 5555665443 456677778788887777777788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+++..|++++|+..|++++.+.|.+.... . +......|.
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---------------------------------~-------~~~~~~~~~ 194 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------------------------N-------EEAQKAQAL 194 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------------------------S-------HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCC---------------------------------h-------HHHHHHHHH
Confidence 888888888888888888888877653200 0 011122233
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIE 443 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (546)
...++.++|.+|..+|++++|+.+|+++++++|++..+++.
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--------------------------------------- 235 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR--------------------------------------- 235 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---------------------------------------
Confidence 36788999999999999999999999999999987644433
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 009045 444 PPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 523 (546)
Q Consensus 444 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 523 (546)
+|.+|...|++++|+..|+++++++|++..++..+|.++..
T Consensus 236 ---------------------------------------lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 236 ---------------------------------------RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp ---------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 33377788899999999999999999999999999999999
Q ss_pred cCChHHH-HHHHHHHHHHhc
Q 009045 524 TGDHRSS-GKCLEKVLMVYC 542 (546)
Q Consensus 524 ~g~~~~A-~~~~~~al~~~~ 542 (546)
.|++++| ...|++++..+.
T Consensus 277 ~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 277 IRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 9999988 567888877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-17 Score=164.39 Aligned_cols=165 Identities=18% Similarity=0.120 Sum_probs=131.2
Q ss_pred cCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccc
Q 009045 255 SGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGAN 334 (546)
Q Consensus 255 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 334 (546)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------- 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW------------- 68 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------
Confidence 4789999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhh
Q 009045 335 TGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 414 (546)
Q Consensus 335 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~ 414 (546)
..|++++|+.+|+++++++|++..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 69 --------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 131 (568)
T 2vsy_A 69 --------TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL--------- 131 (568)
T ss_dssp --------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------
T ss_pred --------HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence 899999999999999999999999999999999999999999999999999999876444333
Q ss_pred hccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHh---c
Q 009045 415 RSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA---S 491 (546)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~---g 491 (546)
|.++... |
T Consensus 132 ---------------------------------------------------------------------~~~~~~~~~~g 142 (568)
T 2vsy_A 132 ---------------------------------------------------------------------LNWRRRLCDWR 142 (568)
T ss_dssp ---------------------------------------------------------------------HHHHHHTTCCT
T ss_pred ---------------------------------------------------------------------HHHHHHhhccc
Confidence 2256666 7
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009045 492 AVNVAKECLLAALKADPKAAHIWANLA 518 (546)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (546)
++++|+..|+++++.+|++...+..++
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888888888888888877776666
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=156.84 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGI 284 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 284 (546)
..+++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|++ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44566888888999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCC
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 364 (546)
+|..+|++++|+.+|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 009045 365 AHIWANLANAYYLTGDHRSS-GKCLEKAAKL 394 (546)
Q Consensus 365 ~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 394 (546)
..++..++.++..+|++++| ...|++++..
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 5577777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-17 Score=131.37 Aligned_cols=123 Identities=18% Similarity=0.126 Sum_probs=85.3
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 229 SKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 229 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
..|++++..+|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 309 HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++..++.+|.++. ..|++++|+.+|+++++++|+++.......
T Consensus 85 ~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 85 EPRFPFHAAECHL---------------------QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp CTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred CcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 7777777666666 667777777777777777666554444333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=133.18 Aligned_cols=152 Identities=16% Similarity=0.090 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG----DMEQSAKCFQ 300 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 300 (546)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4678888888875 67899999999999999999999999999875 678999999999988 7 8999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH-
Q 009045 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYYL- 377 (546)
Q Consensus 301 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~- 377 (546)
++.+ +.++.+++.+|.++..-. ...+++++|+.+|+++++..+ .++.+++.||.+|..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~-----------------g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQ-----------------AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGG-----------------GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCHHHHHHHHHHHHcCC-----------------CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 9964 578899999998886210 026899999999999999887 358999999999999
Q ss_pred ---cCChHHHHHHHHHHHhcCCCChhH
Q 009045 378 ---TGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 378 ---~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
.+++++|+.+|+++++. +.++.+
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 88999999999999987 444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=131.79 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=114.4
Q ss_pred HHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHH
Q 009045 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACL 341 (546)
Q Consensus 262 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (546)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------------------- 66 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-------------------- 66 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------------------
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH--------------------
Confidence 456889999999999999999999999999999999999999999999999999999888
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|++++++.|+++...
T Consensus 67 -~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 67 -AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 899999999999999999999999999999999999999999999999999999887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=123.58 Aligned_cols=134 Identities=30% Similarity=0.506 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+...+..++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~- 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY- 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
..|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 81 --------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 --------------------KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------------------TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------------------HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999999999999999999999999999999999999999999999886
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-16 Score=135.05 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
+|.+.|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. . ..+++.++.+|.. +..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~------~~a~~~lg~~y~~-~g~- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------D------GDALALLAQLKIR-NPQ- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------C------HHHHHHHHHHTTS-STT-
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------C------HHHHHHHHHHHHc-CCC-
Confidence 456677777765 789999999999999999999999999998752 1 1334445544433 100
Q ss_pred cccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHH
Q 009045 215 LDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLK----SGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQ 288 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 288 (546)
..++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..+ .++.+++.||.+|..
T Consensus 66 ------~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 66 ------QADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp ------SCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 1256777777777643 3556667777777666 6677777777777766665 236666677777766
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 289 ----SGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 289 ----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.+++++|+.+|+++++. +.+..+++.+|.+|.
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 66666666666666666 555666666666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=147.67 Aligned_cols=198 Identities=13% Similarity=0.003 Sum_probs=135.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
|.++..+..+|..++..|++++|+..|++++..+|++..++.++|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~~~~~~A~~ 59 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALA 59 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 4567778888888888888888888888888888888888888888777 7788888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMAS 432 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (546)
.|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++...+.......+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-------------------- 119 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-------------------- 119 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------------------
Confidence 888888888888888888888888888888888888888888886532211111100000
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 009045 433 ILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAH 512 (546)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 512 (546)
.....+.. ......+.+......++.+ ..|++++|++.++++++++|++..
T Consensus 120 -----------------------~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 120 -----------------------AKKKRWNS----IEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp -----------------------HHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHH
T ss_pred -----------------------HHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhh
Confidence 00000000 0001111122222222222 367888888888888888888888
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 009045 513 IWANLANAYYLT-GDHRSSGKCLEKVLMV 540 (546)
Q Consensus 513 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 540 (546)
....++.++... +.+++|...|.++.+.
T Consensus 171 ~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 171 IRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 878887777665 6788888888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=143.31 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=165.8
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHH-------HHHHHHcCChHHHHHHHHhhHhcCCCChHH---------------
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTL-------GLILLKSGRLQSSISVLSSLLAVDPNNCDC--------------- 278 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------- 278 (546)
.+++..|...|.++++.+|...++|..+ +.++...+++.+++..+++.+.+.|....+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 5677999999999999999999999999 899999999999999999999988765443
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 279 ------IGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 279 ------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
+..++.++...|++++|.+.|..++...|.+. ..+.++.++. +.++|++|+.
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~---------------------~~~r~~dA~~ 156 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG---------------------AAERWTDVID 156 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH---------------------HcCCHHHHHH
Confidence 44488899999999999999999998888887 8888887777 8999999999
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHhhhccCchhHHHHHHH
Q 009045 353 CLLAALKADPK--AAHIWANLANAYYLTGDHRSSGKCLEKAAKLE--PNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGN 428 (546)
Q Consensus 353 ~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 428 (546)
.|+.++...+. ...+++.+|.++..+|++++|+.+|++++.-. |..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------------------------------ 206 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------------------------------ 206 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------------------------------
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------------------------------
Confidence 99988765322 14589999999999999999999999998532 321
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC
Q 009045 429 EMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADP 508 (546)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 508 (546)
...+++.+|.++.++|+.++|...|++++..+|
T Consensus 207 -----------------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 207 -----------------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred -----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 112334455588899999999999999999999
Q ss_pred CCHHHHHHHHH
Q 009045 509 KAAHIWANLAN 519 (546)
Q Consensus 509 ~~~~~~~~lg~ 519 (546)
+ ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 777766643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=144.17 Aligned_cols=214 Identities=11% Similarity=-0.004 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
..++..|.-+ ..+++.+|...|.++++++|+. +..|.+++.+ |+.....+...++..+++..+
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~------------~Daw~g~~a~----g~~~~~~L~~~~r~~~a~~~~ 70 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESA------------CDAWIGRIRC----GDTDRVTLFRAWYSRRNFGQL 70 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHT----TCCCHHHHHHHHHTGGGTTHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh------------hHHHHhHHHc----cCCcHHHHHHHHHHHHHHHHH
Confidence 3455566665 5899999999999999997764 3445555211 222222234555568888899
Q ss_pred HHHHhcCcccHH---------------------HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC
Q 009045 232 KESMQSDTRQAV---------------------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG 290 (546)
Q Consensus 232 ~~al~~~p~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 290 (546)
++.+.+.|.... +...++.++...|+|++|.+.|..++...|++. +++.+|.+++..+
T Consensus 71 ~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~ 149 (282)
T 4f3v_A 71 SGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE 149 (282)
T ss_dssp HHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT
T ss_pred HHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC
Confidence 999998776433 445588999999999999999999999999888 9999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC--CC-CH
Q 009045 291 DMEQSAKCFQDLILKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD--PK-AA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~ 365 (546)
+|++|+..|+++....+.. ..+++.+|.++. .+|++++|+.+|++++... |. .+
T Consensus 150 r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~---------------------~LG~~~eAl~~l~~a~~g~~~P~~~~ 208 (282)
T 4f3v_A 150 RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA---------------------NLALFTEAERRLTEANDSPAGEACAR 208 (282)
T ss_dssp CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHhcCCCCccccH
Confidence 9999999999876643111 235677777666 9999999999999998654 55 67
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
.+++.+|.++..+|+.++|...|++++..+|+ ..+...+
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 89999999999999999999999999999998 7665554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-14 Score=143.55 Aligned_cols=383 Identities=11% Similarity=0.031 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
.....|++.+..+|.+...|..+.......+.++.+...|++++...|... ..|...+...
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~------------~lW~~Yi~~E------- 110 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA------------NIWCMRLSLE------- 110 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHH-------
Confidence 344567788888888888888888888888888888888888888876541 1222222111
Q ss_pred cccccChhh---HHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCh----HH----HHHHHHhhHhc----CCCChH
Q 009045 215 LDKELEPEE---LEEILSKLKESMQSDT--RQAVVWNTLGLILLKSGRL----QS----SISVLSSLLAV----DPNNCD 277 (546)
Q Consensus 215 ~~~~~~~~~---~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~ 277 (546)
+..++ ++.+..+|++++...| .+..+|..........++. ++ ....|++++.. ++....
T Consensus 111 ----~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~ 186 (679)
T 4e6h_A 111 ----FDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQ 186 (679)
T ss_dssp ----HTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred ----HhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchH
Confidence 23344 7888888888888873 5667777776655555543 23 34677777653 565666
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCC-HH-HHHHHHHHH-------------------------H
Q 009045 278 CIGNLGIAYF---------QSGDMEQSAKCFQDLILKDQNH-PA-ALINYAALL-------------------------L 321 (546)
Q Consensus 278 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~-~~-~~~~l~~~~-------------------------~ 321 (546)
+|........ .+++.+.+...|++++.+ |.. .. .|..+...- .
T Consensus 187 iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 187 FWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHH
Confidence 6666554433 234567788888888864 322 11 111110000 0
Q ss_pred Hh---hCccccc------------------------cccccccchHHHhhc-------CHHHHHHHHHHHHhcCCCCHHH
Q 009045 322 CK---YGSVLAG------------------------AGANTGEGACLDQAS-------AVNVAKECLLAALKADPKAAHI 367 (546)
Q Consensus 322 ~~---~~~~~~~------------------------~~~~~~~~~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~ 367 (546)
.. ....+.. ...|..........+ ..+.....|++++...|.++.+
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~l 345 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEI 345 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHH
Confidence 00 0000000 000000111111111 1344668899999999999999
Q ss_pred HHHHHHHHHHcCChHHHH-HHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH---hcCCCC---
Q 009045 368 WANLANAYYLTGDHRSSG-KCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASIL---REGDPV--- 440 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 440 (546)
|+..+..+...|+.++|. ..|++++...|.+...+...+...... .....+..-+..+...+...+ ....+.
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~-~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN-TKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 999999999999999997 999999999999876666555433221 111111112222222111111 010000
Q ss_pred -----CCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccc-h--hhhHHhhHHHHHHHhc-cHHHHHHHHHHHHHhCCCCH
Q 009045 441 -----QIEPPIAWAGFAAVQKTHHEVAAAFETEENELSK-M--EECAGAGESAFLDQAS-AVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 441 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~ 511 (546)
......+|..++......|..+.|...+.+++.. . ....|...|.+..+.+ +++.|...|+.+++..|+++
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 0023457999999999999999999999998764 2 2345555555555554 48999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 512 HIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
..|...+......|+.+.|...|++++...+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=131.21 Aligned_cols=145 Identities=18% Similarity=0.223 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
...++.+|.++...|++++|+..|++++ +| ++.+++.+|.+|...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567889999999999999999999996 33 68899999999999999999999999999999999999999999888
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCChHHHH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA----------------HIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~ 385 (546)
..|++++|+..|+++++..|.+. .++..+|.++...|++++|+
T Consensus 83 ---------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 ---------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 89999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 386 KCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 386 ~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
..|++++++.|++.......+...+
T Consensus 142 ~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 142 EQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999988665555444333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-14 Score=143.64 Aligned_cols=390 Identities=10% Similarity=-0.010 Sum_probs=249.9
Q ss_pred HHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHH
Q 009045 109 SKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ---PLKAVSSYEKAEEI 180 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~ 180 (546)
+.+++.|..+|.+...|...... ....+...|++++...|.....|...+......|+ ++.+...|++++..
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 67888899999888877654332 33678889999999999999999999999999999 99999999999998
Q ss_pred hcccchhccchhhHHHHHHHhhccccccccCCCccccccC--hhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHH-
Q 009045 181 LLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELE--PEELEEILSKLKESMQS----DTRQAVVWNTLGLILL- 253 (546)
Q Consensus 181 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~- 253 (546)
.|.+. ..+ +|...+......+.. .. .+..+.....|++++.. ++....+|........
T Consensus 133 ~~~~~----sv~------LW~~Yl~f~~~~~~~-----~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 133 ELGNN----DLS------LWLSYITYVRKKNDI-----ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp SSCCC----CHH------HHHHHHHHHHHHSCS-----TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred cCCCC----CHH------HHHHHHHHHHHhccc-----ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 63110 111 111111100001110 00 11122333444444432 3333344433333221
Q ss_pred --------HcCChHHHHHHHHhhHhcCCCCh-------------------------------------------------
Q 009045 254 --------KSGRLQSSISVLSSLLAVDPNNC------------------------------------------------- 276 (546)
Q Consensus 254 --------~~g~~~~A~~~~~~al~~~p~~~------------------------------------------------- 276 (546)
.+++.+.+..+|++++.+-....
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 12234444455555544211110
Q ss_pred -------------------------HHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 277 -------------------------DCIGNLGIAYFQSG-------DMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 277 -------------------------~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
..|......-...+ ..+.....|++++...|.++..|+.++..+.
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~--- 354 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQG--- 354 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH---
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---
Confidence 11211111111111 1223456788888888888888887777766
Q ss_pred CccccccccccccchHHHhhcCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAK-ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE-------- 395 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 395 (546)
..|+.++|+ ..|++++...|.+...|...+.+....|++++|...|++++...
T Consensus 355 ------------------~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~ 416 (679)
T 4e6h_A 355 ------------------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM 416 (679)
T ss_dssp ------------------HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 778888997 99999999999999999999999999999999999999999752
Q ss_pred ---CCC-----------hhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcc-c
Q 009045 396 ---PNC-----------MSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHH-E 460 (546)
Q Consensus 396 ---p~~-----------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 460 (546)
|.+ ..+|...+..... . ..+..+..-+...+... ......+|...+.+....+ +
T Consensus 417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-----~---~~l~~AR~vf~~A~~~~---~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 417 EDDPTNESAINQLKSKLTYVYCVYMNTMKR-----I---QGLAASRKIFGKCRRLK---KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-----H---HCHHHHHHHHHHHHHTG---GGSCTHHHHHHHHHHHTTTSC
T ss_pred hccCcchhhhhhhccchHHHHHHHHHHHHH-----c---CCHHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHhCCC
Confidence 432 1122222221111 1 11122222222222220 1123467777777777665 4
Q ss_pred HHHHHHHHHhhccc--hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009045 461 VAAAFETEENELSK--MEECAGAGESAFLDQASAVNVAKECLLAALKADP---KAAHIWANLANAYYLTGDHRSSGKCLE 535 (546)
Q Consensus 461 ~~~A~~~~~~~l~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (546)
++.|...|...+.. .....|...+......|+.+.|...|++++...| .....|......-...|+.+.+...++
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999998874 3445566777788889999999999999999988 356788888888899999999999999
Q ss_pred HHHHHhcccC
Q 009045 536 KVLMVYCSSN 545 (546)
Q Consensus 536 ~al~~~~~~~ 545 (546)
++.+.+|+++
T Consensus 566 R~~~~~P~~~ 575 (679)
T 4e6h_A 566 RFFEKFPEVN 575 (679)
T ss_dssp HHHHHSTTCC
T ss_pred HHHHhCCCCc
Confidence 9999998653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=126.45 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred HHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 263 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
..|++++.++|++...++.+|.+++..|++++|+..|++++..+|++..++..+|.++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------------------- 63 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--------------------- 63 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------------------
Confidence 57889999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
..|++++|+.+|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++....
T Consensus 64 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 64 SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8999999999999999999999999999999999999999999999999999998876544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=120.45 Aligned_cols=118 Identities=18% Similarity=0.089 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|..+..+..+|..++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD------PKAAHIWANLANAYYL 377 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 377 (546)
++. ..|++++|+..|+++++++ |.+..++..++.+...
T Consensus 81 ~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQI---------------------AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHH---------------------HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHH---------------------HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 777 7888888888888888888 8888888777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=130.19 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=118.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH-HHHcCCH--HH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA-YFQSGDM--EQ 294 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 294 (546)
+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
|+..|+++++.+|++..++..+|.++. ..|++++|+..|+++++.+|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAF---------------------MQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999998888 88999999999999999999875544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-15 Score=148.05 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcC--CH
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGR----------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSG--DM 292 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~ 292 (546)
++|+..+.+++..+|++..+|+.++.++...|+ +++++..++++++.+|++..+|...+.++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+++++.++++++.+|.+..+|...+.++. ..| .++++++++.++++.+|.+..+|..+
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~---------------------~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAA---------------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHH---------------------HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999999999998887 677 89999999999999999999999999
Q ss_pred HHHHHHc--------------CChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 372 ANAYYLT--------------GDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 372 ~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
+.++..+ +.++++++++.+++.++|++..+|+.+...
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999885 567999999999999999999999887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=121.11 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+.+.++..+|.+++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++...+..++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999998877666555555
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+. .+|.++...|++++|+++|++++...|+
T Consensus 86 ~~--------------~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MS--------------RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HH--------------HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HH--------------HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 54 2455666777777777777777777664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=143.98 Aligned_cols=188 Identities=11% Similarity=-0.015 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHH
Q 009045 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEI 227 (546)
Q Consensus 148 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A 227 (546)
|.++..++.+|..+...|++++|+..|+++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------------------------- 35 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------------------------------- 35 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------------------------
Confidence 56778888888888888888888888888887644
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 228 LSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 228 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
+++.+++++|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|
T Consensus 36 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 36 ------------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555555555555555555555555555555555555555555555554
Q ss_pred CCH-----HHHHHHHHHHHHhhC-----ccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 308 NHP-----AALINYAALLLCKYG-----SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 308 ~~~-----~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
++. ..+..+......... ...........++.+ ..|++++|++.++++++.+|++......++.++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 104 EQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181 (281)
T ss_dssp HTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence 331 111111000000000 000000000001111 35778888888888888888887777777777766
Q ss_pred c-CChHHHHHHHHHHHhc
Q 009045 378 T-GDHRSSGKCLEKAAKL 394 (546)
Q Consensus 378 ~-g~~~~A~~~~~~al~~ 394 (546)
. +.+++|...|.++.+.
T Consensus 182 ~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 182 HDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 6 6678888888877764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=146.54 Aligned_cols=191 Identities=11% Similarity=0.014 Sum_probs=161.4
Q ss_pred HcCC-hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 254 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----------MEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 254 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
..|+ .++|+..+.+++.++|++..+|+..+.++..+|+ +++++..++++++.+|++..+|...+.++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~- 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS- 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 4444 4678999999999999999999999999999998 999999999999999999999999999987
Q ss_pred hhCccccccccccccchHHHhhc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCh
Q 009045 323 KYGSVLAGAGANTGEGACLDQAS--AVNVAKECLLAALKADPKAAHIWANLANAYYLTG-DHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~ 399 (546)
+.+ +++++++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+.
T Consensus 119 --------------------~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 119 --------------------RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp --------------------TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred --------------------HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 777 7799999999999999999999999999999999 89999999999999999998
Q ss_pred hHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhH
Q 009045 400 STRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECA 479 (546)
Q Consensus 400 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 479 (546)
.+|...+..... .+....+ ....
T Consensus 179 saW~~r~~ll~~----------------------------------------------l~~~~~~-------~~~~---- 201 (567)
T 1dce_A 179 SSWHYRSCLLPQ----------------------------------------------LHPQPDS-------GPQG---- 201 (567)
T ss_dssp HHHHHHHHHHHH----------------------------------------------HSCCCCS-------SSCC----
T ss_pred cHHHHHHHHHHh----------------------------------------------hcccccc-------cccc----
Confidence 877766553211 0000000 0000
Q ss_pred HhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 480 GAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 480 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
-...+.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 202 -------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 -------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0012458999999999999999999999999999999988666
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=128.44 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=119.2
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhhCccccc
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL-LLCKYGSVLAG 330 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~ 330 (546)
+...|++++|+..|++++..+|++..++..+|.+|...|++++|+.+|+++++++|.+...+..+|.+ +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------- 90 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--------- 90 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------
Confidence 45679999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred cccccccchHHHhhcCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 331 AGANTGEGACLDQASAV--NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
..|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|++.....
T Consensus 91 ------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 91 ------------QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp ------------HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred ------------hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 78888 99999999999999999999999999999999999999999999999999865543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-15 Score=123.10 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHhc
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN--AYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~ 394 (546)
. ..|++++|+.+|+++++.+|.+..++..++. .+...|++++|+..+.++..+
T Consensus 92 ~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 M---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------------HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7 8999999999999999999999988855554 488899999999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-16 Score=133.67 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=127.8
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh----------------HHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC----------------DCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la 283 (546)
..|+++++.+.+.......+..+..+..+|.+++..|+|++|+..|++++.+.|.++ .++.++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 345668888777777777777888999999999999999999999999999999887 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.++..+|++++|+.+++++++++|.+..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM---------------------YFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999998887 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 009045 364 AAHIWANLANAYYLTGDHRSSG-KCLEKAAK 393 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~ 393 (546)
+..++..++.++...++..++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888777 44555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=132.71 Aligned_cols=181 Identities=10% Similarity=-0.023 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.....+...+..+...|++++|++.+.++++..+........+...+ .+|.++...|++++|+.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~A~~~ 137 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY---------------YVAAYVLKKVDYEYCILE 137 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---------------HHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHH---------------HHHHHHhcCCCHHHHHHH
Confidence 34455666777888888888888888888887766543321111111 134555588899999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCChhHHHHHHHHHHHHhhhccCchhHHH
Q 009045 354 LLAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEKAAKL---EPNCMSTRYAVAVSRIKDAERSQEPTEQLS 424 (546)
Q Consensus 354 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 424 (546)
|+++++..+.. ..++..+|.+|...|++++|+.+|++++++ .|++...
T Consensus 138 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~----------------------- 194 (293)
T 2qfc_A 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF----------------------- 194 (293)
T ss_dssp HHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------------------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----------------------
Confidence 99998765443 568899999999999999999999999944 3432110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHH
Q 009045 425 WAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAAL 504 (546)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 504 (546)
...+++++|.+|...|++++|+.++++++
T Consensus 195 ---------------------------------------------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 195 ---------------------------------------------------DVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 01234456667778888888888888888
Q ss_pred HhCCC------CHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHhcc
Q 009045 505 KADPK------AAHIWANLANAYYLTGDHRSS-GKCLEKVLMVYCS 543 (546)
Q Consensus 505 ~~~p~------~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~ 543 (546)
++.++ ...+++++|.+|..+|++++| ..+|++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 76432 267888999999999999999 7789998887753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-15 Score=117.76 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=113.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
.|....+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++.+|.+..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.++. ..|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 92 ~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALE---------------------AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8887 88999999999999999999999999999999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=117.13 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=117.1
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+|.+...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 381 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 381 (546)
|.++. ..|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 87 ~~~~~---------------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALS---------------------SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHH---------------------HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88887 899999999999999999999999999999999998876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-14 Score=114.61 Aligned_cols=106 Identities=27% Similarity=0.447 Sum_probs=70.8
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
.+|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445556666666666667777777777777666666666666777777777777777777777776666666666666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+.++. ..|++++|+..+++++..+|.
T Consensus 110 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 110 GNAYY---------------------KQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHH---------------------TTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH---------------------HHccHHHHHHHHHHHHccCCC
Confidence 66555 666677777777776666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=123.39 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
.++..++.+|.+++..|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..+++.+|.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555544444444444444
Q ss_pred HH
Q 009045 320 LL 321 (546)
Q Consensus 320 ~~ 321 (546)
+.
T Consensus 89 ~~ 90 (164)
T 3sz7_A 89 RF 90 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-16 Score=152.07 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=137.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLG 283 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la 283 (546)
...+++++|+..|++++...|..+..+..+|.+++..|+|++|+..|++++.++|.+ ..++.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 284 IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.+|..+|++++|+.+|++++.++|++..+++.+|.++. ..|++++|+..|+++++++|+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~---------------------~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999888 899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHH-HHHHH
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKC-LEKAA 392 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~-~~~al 392 (546)
+..++..++.++..++++++|... |++++
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888753 44444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=115.43 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKE 352 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (546)
|..+..+..+|..++..|++++|+..|+++++++|++..++..+|.++. ..|++++|+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~ 59 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA---------------------KLMSFPEAIA 59 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---------------------HhcCHHHHHH
Confidence 3456789999999999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCChhHHHHHHH
Q 009045 353 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLE------PNCMSTRYAVAV 407 (546)
Q Consensus 353 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 407 (546)
.|+++++++|+++.+++.+|.++..+|++++|+..|+++++++ |++..++..+..
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 887766655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=121.25 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
++.++..++.+|.+++..|++++|+..|+++++++|++..++..+|.++. ..|++++|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---------------------~~g~~~~A~ 65 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS---------------------ASGQHEKAA 65 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 45567899999999999999999999999999999999999999999888 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.+|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++...++..++..+
T Consensus 66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777666443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=123.85 Aligned_cols=152 Identities=8% Similarity=-0.023 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 227 ILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--NNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 227 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
|+..+++.+...+.....+..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888877666677778999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hCCC----CHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 009045 305 KDQN----HPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 380 (546)
Q Consensus 305 ~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 380 (546)
.+|+ +......++..+... ....+++.+|...|+++.+..|+.......+. ++..+|+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l-----------------~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~ 226 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKF-----------------ATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN 226 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH-----------------HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC
T ss_pred cCccccccchHHHHHHHHHHHHH-----------------HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC
Confidence 9883 233445555443211 11233899999999999998887222222233 8999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 009045 381 HRSSGKCLEKAAKLEP 396 (546)
Q Consensus 381 ~~~A~~~~~~al~~~p 396 (546)
+++|...++.+++..|
T Consensus 227 ~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887743
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-14 Score=123.37 Aligned_cols=140 Identities=12% Similarity=0.171 Sum_probs=121.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..
T Consensus 17 ~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 45677799999999996 33 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH----------------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 299 FQDLILKDQNHP----------------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 299 ~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
|+++++..|.+. .++..+|.++. ..|++++|+..|+++++++|
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---------------------KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHcCc
Confidence 999999888776 78888888877 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 363 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
++. .+..++|+..+.+....
T Consensus 153 ~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 153 EPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp SGG------------GGHHHHHHHHHHTTCCC
T ss_pred ccc------------cchHHHHHHHHHhcccc
Confidence 863 24455666666554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=130.63 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=138.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHH
Q 009045 146 KMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELE 225 (546)
Q Consensus 146 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 225 (546)
.+|.....+...+..+...|++++|+..++++++..+.. +........++.+|.++ ...|+++
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~-----------~~~~~~~ 132 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH------PEFQQFLQWQYYVAAYV-----------LKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC------HHHHHHHHHHHHHHHHH-----------HTSSCHH
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC------hhHHHHHHHHHHHHHHH-----------hcCCCHH
Confidence 445566778889999999999999999999999975432 22222334444555544 4556679
Q ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhH---hcCCCCh----HHHHHHHHHHHHcCCH
Q 009045 226 EILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLL---AVDPNNC----DCIGNLGIAYFQSGDM 292 (546)
Q Consensus 226 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~ 292 (546)
+|+..|++++...+.. ..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 9999999999765433 5689999999999999999999999999 4455543 6899999999999999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH-HHHHHHHHhc
Q 009045 293 EQSAKCFQDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA-KECLLAALKA 360 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 360 (546)
++|+.+|++++.+.+.. ..++..+|.++. ..|++++| ..+|++++.+
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~---------------------~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLR---------------------KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH---------------------HcCCcHHHHHHHHHHHHHH
Confidence 99999999999875431 445566666655 99999999 7889998865
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-16 Score=153.87 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=136.7
Q ss_pred hhhHHHHHHHHHH----HHhcCcccHHHHHHHHHHH------------HHcCChHHHHHHHHhhHhcCCCChHHHHHHHH
Q 009045 221 PEELEEILSKLKE----SMQSDTRQAVVWNTLGLIL------------LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGI 284 (546)
Q Consensus 221 ~~~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 284 (546)
...++.|+..+++ ++.++|.. +|...|... ...+++++|+..|++++...|.....+..+|.
T Consensus 199 ~~~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~ 276 (457)
T 1kt0_A 199 PIGIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGT 276 (457)
T ss_dssp CHHHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHH
Confidence 3467888888887 78888864 444444322 24567889999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 285 AYFQSGDMEQSAKCFQDLILKDQNH---------------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
+++..|++++|+..|+++++++|.+ ..++.++|.++. +.|++++
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------------~~g~~~~ 335 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL---------------------KLREYTK 335 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH---------------------HhcCHHH
Confidence 9999999999999999999999998 466777777666 9999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.
T Consensus 336 A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 336 AVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=133.14 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=127.8
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHH------HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAV------VWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAY 286 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 286 (546)
+..|++++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4678889999999999987765544 34458999999999999999999999975433 33799999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 287 FQSGDMEQSAKCFQDLILKDQ---NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
..+|++++|+.+|+++++... .+ ..++.++|.++. ..|++++|+.+++++++
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~---------------------~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---------------------LDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHHH
Confidence 999999999999999996422 22 234455555554 99999999999999998
Q ss_pred cCCCC------HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcC
Q 009045 360 ADPKA------AHIWANLANAYYLTGD-HRSSGKCLEKAAKLE 395 (546)
Q Consensus 360 ~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 395 (546)
+.+.. +.++..+|.+|..+|+ +++|+.+|++++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 86443 7899999999999995 699999999999764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=109.34 Aligned_cols=121 Identities=31% Similarity=0.445 Sum_probs=103.2
Q ss_pred Cccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 238 DTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 238 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
+|.. ..+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++...|.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4444 678888999999999999999999999998898888999999999999999999999999999888888888888
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+.++. ..|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 84 a~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYY---------------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHH---------------------HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 87777 7888999999999999999988888888888887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=115.18 Aligned_cols=129 Identities=15% Similarity=0.025 Sum_probs=111.8
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhc
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERS 416 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~ 416 (546)
+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|++..+++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------- 85 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY------------- 85 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-------------
Confidence 3445559999999999999999999999999999999999999999999999999999987654333
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHH
Q 009045 417 QEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVA 496 (546)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A 496 (546)
.+|.++...|++++|
T Consensus 86 -----------------------------------------------------------------~~a~~~~~~~~~~~A 100 (166)
T 1a17_A 86 -----------------------------------------------------------------RRAASNMALGKFRAA 100 (166)
T ss_dssp -----------------------------------------------------------------HHHHHHHHTTCHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHhccHHHH
Confidence 334478888999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHHhcc
Q 009045 497 KECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 497 ~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.+|+++++++|++..++..++.+ +...|++++|+..++++..++.+
T Consensus 101 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 101 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 999999999999999988555555 88899999999999999888754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=115.60 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------C-----HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 279 IGNLGIAYFQSGDMEQSAKCFQDLILKDQN-------H-----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
+..+|..++..|+|++|+..|+++++++|+ + ..+|.++|.++. .+|+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~---------------------~Lgr 72 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA---------------------GLRS 72 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH---------------------HCCC
Confidence 334444444444444444444444444444 2 337777777776 9999
Q ss_pred HHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 347 VNVAKECLLAALKA-------DPKAAHIW----ANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 347 ~~~A~~~~~~al~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
+++|+.+|++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999 99999999 9999999999999999999999999999886544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=112.31 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~- 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT- 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
..|++++|+..|+++++.+|++..
T Consensus 97 --------------------~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 --------------------NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------------------HHHHHHHHHHHHHHHHC-------
T ss_pred --------------------HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 889999999999999999987643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=116.02 Aligned_cols=109 Identities=9% Similarity=-0.012 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN-------NCD-----CIGNLGIAYFQSGDMEQSAKCFQDLILK---- 305 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 305 (546)
+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 306 ---DQNHPAAL----INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 306 ---~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+|++..+| +++|.++. .+|++++|+.+|+++++++|++..+...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~---------------------~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD---------------------GLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 99998888 99999999999999999999865444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=114.38 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=70.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYA 317 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 317 (546)
+|.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-----AAHIWANLANAY 375 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 375 (546)
.++. ..|++++|+..|+++++++|+ +..+...+..+.
T Consensus 85 ~~~~---------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQL---------------------EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHH---------------------HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 5555 556666666666666665555 444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=112.52 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+.++.++|.+++..|+|++|+.+|+++++++|++..++.++|.++. ..|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---------------------~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF---------------------EEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH---------------------HhhhHHHHHHHH
Confidence 35678899999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 355 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 355 ~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+++++++|++ ..++..+|.++..+|++++|+.+|++++...|+
T Consensus 66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998764 458899999999999999999999999999886
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=125.43 Aligned_cols=147 Identities=14% Similarity=0.041 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP------------ 310 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------ 310 (546)
......+......|++++|.+.+.......+.....+..+|..++..|++++|+..|++++.+.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445667778889999999999888777777888999999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009045 311 ----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 386 (546)
Q Consensus 311 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 386 (546)
.++..+|.++. ..|++++|+.+++++++++|.+..+++.+|.+|..+|++++|+.
T Consensus 85 ~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 85 NIEISCNLNLATCYN---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 66666666666 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHH
Q 009045 387 CLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 387 ~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.|+++++++|++..++..++....
T Consensus 144 ~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 144 NLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHH
Confidence 999999999999988887766433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=110.88 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++. ..|++++|+..|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 76 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999988 89999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+++++|+++.++..+|.++...|++++|+..|+++++++|++.
T Consensus 77 al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999999999999999764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-14 Score=121.60 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=127.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCC
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 291 (546)
++..|++++|...++......+....++..+|.++...|++++|+..|++++.+ .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356788999999666555544467889999999999999999999999999984 44557889999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCCH----HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-
Q 009045 292 MEQSAKCFQDLILK---DQNHP----AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK- 363 (546)
Q Consensus 292 ~~~A~~~~~~al~~---~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 363 (546)
+++|+.++++++.+ .+++. .++..+|.++. ..|++++|+.++++++.+.+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVAL---------------------HFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999988 44332 33455555554 999999999999999976322
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 364 -----AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 364 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
...++..+|.++...|++++|+.++++++++....
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 23457899999999999999999999999875543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=106.26 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+...+..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777776666665
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
..|++++|+..|+++++.+|++..++..++.+.
T Consensus 84 ---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 ---------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------------HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 667777777777777777777777776666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=118.28 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhc------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV------------------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
.+..+..+|..++..|+|++|+..|++++.+ +|.+..++.++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567778888888888888888888888887 3344445555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 009045 303 ILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA-HIWANLANAY 375 (546)
Q Consensus 303 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~ 375 (546)
+.++|++..+++.+|.++. ..|++++|+..|++++.++|++. .+...++.+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARI---------------------AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHH---------------------HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5555555555555554444 44555555555555555555544 3343444333
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=127.88 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.+...+..+...|++++|+..++++++..+. .++.......+..++..+ ...+++++|+.+|+
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~-----------~~~~~~~~Ai~~~~ 139 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY------HPEFQQFLQWQYYVAAYV-----------LKKVDYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHHHHHHH-----------TTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccC------ChHHHHHHHHHHHHHHHH-----------HcccCHHHHHHHHH
Confidence 3445578889999999999999999986433 233333334455566554 45566799999999
Q ss_pred HHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhc-------CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 009045 233 ESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAV-------DPNNCDCIGNLGIAYFQSGDMEQSAKCF 299 (546)
Q Consensus 233 ~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 299 (546)
+++...+.. ..++..+|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++
T Consensus 140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999864432 347999999999999999999999999953 2233568999999999999999999999
Q ss_pred HHHHhhCCCC------HHHHHHHHHHHHHhhCccccccccccccchHHHhhc-CHHHHHHHHHHHHhc
Q 009045 300 QDLILKDQNH------PAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS-AVNVAKECLLAALKA 360 (546)
Q Consensus 300 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~ 360 (546)
++++++.+.. ..++..+|.++. ..| .+++|+.+|++++.+
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~---------------------~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLR---------------------KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHH---------------------HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHH---------------------HhCCcHHHHHHHHHHHHHH
Confidence 9999876543 456666666666 888 579999999999875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=138.39 Aligned_cols=135 Identities=7% Similarity=0.130 Sum_probs=117.0
Q ss_pred cccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 206 LPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 206 ~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
.+..+|.. ++..|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 8 ~~~~lg~~----~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 8 ELKTQAND----YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp TSSSSSSS----TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHH----HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34445555 67888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHH----------
Q 009045 286 YFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLL---------- 355 (546)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---------- 355 (546)
|..+|++++|++.|+++++++|++..++..++.+.. +...|++++|++.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~-------------------~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK-------------------IVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH-------------------HHHHHHHCCC------CCSTTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------------HHHHHHHHHHhccccccchhHhhhh
Confidence 999999999999999999999999999988888732 127899999999999
Q ss_pred -HHHhcCCC
Q 009045 356 -AALKADPK 363 (546)
Q Consensus 356 -~al~~~p~ 363 (546)
+++.+.|.
T Consensus 145 ~~al~~~~~ 153 (477)
T 1wao_1 145 IESMTIEDE 153 (477)
T ss_dssp TSSCCCCTT
T ss_pred hhhcccccc
Confidence 77777765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-13 Score=120.24 Aligned_cols=240 Identities=10% Similarity=0.032 Sum_probs=162.3
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+-.|+|..++....+.-..++ ....+.+.++|+.+|++... .. .+....+...++..+. ++ |+..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~--~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~---a~~~ 88 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTD--NTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK---NIEE 88 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCC--HHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT---CCHH
T ss_pred HHhhHHHHHHHHHHhcCccch--HHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc---HHHH
Confidence 446788999985544322222 34667778889999998852 11 2222334444454442 32 8899
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP--KAAHIWANLANAYY 376 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 376 (546)
+++.+...+.....+..+|.++. ..|++++|+.++.+.+..+| .+.+++..++.++.
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~---------------------~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQA---------------------ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 99988876666666777777776 88999999999999999987 88999999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 377 LTGDHRSSGKCLEKAAKLEPN----CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.+|+.+.|.+.++++.+.+|+ +......++ -+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La--------------------------------------------ea 183 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA--------------------------------------------ES 183 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------------------------------------------HH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHH--------------------------------------------HH
Confidence 999999999999999999883 111222221 12
Q ss_pred HHHHhcc--cHHHHHHHHHhhccchhh----hHHhhHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHH
Q 009045 453 AVQKTHH--EVAAAFETEENELSKMEE----CAGAGESAFLDQASAVNVAKECLLAALKA----------DPKAAHIWAN 516 (546)
Q Consensus 453 ~~~~~~~--~~~~A~~~~~~~l~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~ 516 (546)
++....| ++.+|+..|.+.....+. ..+++ ++.++|++++|...++.+++. +|++++++.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 2222223 666777777665443331 22222 677777777777777766655 4667777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 517 LANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
+..+...+|+ +|.++++++.+..|+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 7777777776 667777777666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=108.72 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=110.3
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
.|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~ 70 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT---------------------KLLEFQLAL 70 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT---------------------TTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH---------------------HhccHHHHH
Confidence 45678899999999999999999999999999999999999999998887 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 352 ECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 352 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
.+++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|.+..++..++....
T Consensus 71 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=108.58 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=101.2
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
..+|.++..++.+|.+++..|++++|+..|++++..+|.+..++..+|.++. ..|++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ 61 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQ 61 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH---------------------HhcCHHH
Confidence 3467889999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 350 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
|+..|+++++++|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999999999999999999987
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=110.46 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=105.3
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
..|.+...++.+|.++...|++++|+..|+++++.+|++ ..++..+|.+|...|++++|+..|++++..+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788899999999999999999999999999999987 88899999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
+.+|.++. ..|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALE---------------------KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------------------HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888877 88889999999999999999988888887776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=112.90 Aligned_cols=98 Identities=18% Similarity=0.264 Sum_probs=89.9
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh----------HHHHHHHHhhHhcCCCChHHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----------QSSISVLSSLLAVDPNNCDCIGNLGIAYFQ 288 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 288 (546)
-+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 289 SG-----------DMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 289 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
+| ++++|+.+|+++++++|++...+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 85 89999999999999999987654433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=135.84 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=94.8
Q ss_pred hcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..+..+..+..+|.+++..|+|++|+..|++++.+.|++. .+++++|.+|..+|++++|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455677899999999999999999999999999999876 4899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA-YYL 377 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~ 377 (546)
|+++++++|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.+ ...
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~---------------------~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKA---------------------ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888 89999999999999999999999999999988 455
Q ss_pred cCChHHHHHHHHHHHhcCCCCh
Q 009045 378 TGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~~~ 399 (546)
.+..+++...|.+++...|++.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 6778889999999999998765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=112.06 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhhCcccccccccccc
Q 009045 276 CDCIGNLGIAYFQSGDMEQSAKCFQDLILK------------------DQNHPAALINYAALLLCKYGSVLAGAGANTGE 337 (546)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 337 (546)
+..+..+|..++..|++++|+..|.+++.+ +|.+..++.++|.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------- 74 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------- 74 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 567899999999999999999999999998 6666677777777776
Q ss_pred chHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-hHHHHHHH
Q 009045 338 GACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM-STRYAVAV 407 (546)
Q Consensus 338 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 407 (546)
..|++++|+..++++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++. .....+..
T Consensus 75 -----~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 75 -----NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp -----HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 44444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-15 Score=146.00 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
..+..+..+|.++...|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..++..+|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCChHHHHHHHH--------
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA--YYLTGDHRSSGKCLE-------- 389 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-------- 389 (546)
+. ..|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 84 ~~---------------------~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 84 NM---------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp HH---------------------HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred HH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 88 89999999999999999999999999999998 889999999999999
Q ss_pred ---HHHhcCCCChhH
Q 009045 390 ---KAAKLEPNCMST 401 (546)
Q Consensus 390 ---~al~~~p~~~~~ 401 (546)
+++.+.|+....
T Consensus 143 ~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 143 LDIESMTIEDEYSGP 157 (477)
T ss_dssp CTTSSCCCCTTCCSC
T ss_pred hhhhhcccccccccc
Confidence 888888776433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=104.94 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++. ..|++++|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~ 60 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY---------------------NLERYEEAV 60 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH---------------------HccCHHHHH
Confidence 56777777888888888888888888888888888887777777777776 777888888
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCC
Q 009045 352 ECLLAALKADPK--AAHIWANLANAYYLT-GDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 352 ~~~~~al~~~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 398 (546)
.+|+++++..|. +..++..+|.++... |++++|+.++++++...|.+
T Consensus 61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 888888888888 888888888888888 88888888888888887765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=102.45 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..++.+|.++...|++++|+..|++++..+|.+...+..+|.++. ..|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---------------------hhccHHHHHHHH
Confidence 35788999999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 355 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=105.79 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYA 317 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~ 317 (546)
.++.+|.+++..|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345666666666666666666666666666665 566666666666666666666666666666666 55555555
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
.++. ..|++++|+..|+++++..|++..+...+..+-
T Consensus 84 ~~~~---------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQY---------------------GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHH---------------------HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHH---------------------HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5555 566666666666666666666655554444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-13 Score=105.79 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 271 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
.+|.+...+..+|.++...|++++|+..|++++...|.+..++..+|.++. ..|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~~~A 65 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS---------------------KLGNYAGA 65 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------HhhchHHH
Confidence 345667899999999999999999999999999999999999999988887 89999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRI 410 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l 410 (546)
+.++++++...|.+..++..+|.++...|++++|+.+|+++++.+|++...+..++....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888877766443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=101.67 Aligned_cols=116 Identities=31% Similarity=0.499 Sum_probs=106.6
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHH
Q 009045 272 DPNN-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVA 350 (546)
Q Consensus 272 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (546)
+|.. ..+++.+|.++...|++++|+..|++++...|.+...+..++.++. ..|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A 62 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEA 62 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH---------------------HhCCHHHH
Confidence 4555 7889999999999999999999999999999999999998888887 89999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 351 KECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 351 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
+..|++++...|.+..++..+|.++...|++++|+..|++++..+|++..++..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888777664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-14 Score=131.62 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=102.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhh
Q 009045 144 ARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEE 223 (546)
Q Consensus 144 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 223 (546)
+...+..+..++.+|.++...|++++|+..|++++.+.|.+. . +...++
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------------~------------------~~~~~~ 220 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------------M------------------FQLYGK 220 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------------H------------------HTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------------h------------------hhhccc
Confidence 344455678899999999999999999999999999865431 0 123455
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 224 LEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 224 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+.++...+. ..+++++|.+|..+|+|++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++
T Consensus 221 ~~~~~~~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 221 YQDMALAVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566654442 24889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 304 LKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 304 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
+++|++..++..++.+... ..+..+++...|.+++...|.++.
T Consensus 292 ~l~p~~~~a~~~L~~l~~~--------------------~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 292 KYAPDDKAIRRELRALAEQ--------------------EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp C--------------------------------------------------------------
T ss_pred HHCCCCHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999998888877542 566788899999999999887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=106.73 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=103.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q 009045 240 RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH-------PAA 312 (546)
Q Consensus 240 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 312 (546)
..+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998876 666
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
+..+|.++. ..|++++|+.+|+++++..| +...+..++.+....+
T Consensus 82 ~~~la~~~~---------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYF---------------------KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 666666665 88999999999999999888 5778888877766544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=107.30 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=107.4
Q ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcC
Q 009045 270 AVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASA 346 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (546)
...|.+...++.+|..+...|++++|+..|+++++.+|++ ...+..++.++. ..|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~ 80 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL---------------------KLED 80 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---------------------HTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH---------------------HHcc
Confidence 4467889999999999999999999999999999999987 777888887777 8999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
+++|+..|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++..++..++.
T Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877765543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=105.01 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=98.8
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN--HPAALIN 315 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 315 (546)
+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred HHHHHHHhhCccccccccccccchHHHhh-cCHHHHHHHHHHHHhcCCCC
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQA-SAVNVAKECLLAALKADPKA 364 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~ 364 (546)
++.++. .. |++++|++++++++...|.+
T Consensus 82 l~~~~~---------------------~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALR---------------------YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHT---------------------TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHH---------------------HHhCCHHHHHHHHHHHhhcccCC
Confidence 888887 89 99999999999999998864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=124.34 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+..+|..+...|++++|+..|++++++.+... ....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------------------------------~~~~ 261 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------------------------------AAAE 261 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------------------------HHSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------------------------------cccC
Confidence 56789999999999999999999999999743210 1112
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
..+....+|.+..++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 34445577888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.++..++.++.
T Consensus 342 ~~~~~l~~~~~ 352 (370)
T 1ihg_A 342 AIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=126.11 Aligned_cols=138 Identities=12% Similarity=-0.014 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----------------DCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999877643 35889999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcC
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP------KAAHIWANLANAYYLTG 379 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g 379 (546)
.+.......... +.. .+|.++...|++++|+.++++++...+ ....++..+|.+|...|
T Consensus 85 ~~~~~~~~~~~~-~~~--------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 85 MMQFAKSKTVKV-LKT--------------LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp HHTSCHHHHHHH-HHH--------------HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHccchHHHHH-HHH--------------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 766544322111 110 123344478899999999999887632 34678899999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 009045 380 DHRSSGKCLEKAAKLE 395 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~ 395 (546)
+|.+|+..+++++...
T Consensus 150 ~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 150 QYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-12 Score=102.30 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP---AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+++.+|.+++..|++++|+..|+++++.+|++. .+++.+|.++. ..|++++|+..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~ 61 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY---------------------ATRNFQLAEAQ 61 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH---------------------HhccHHHHHHH
Confidence 4678999999999999999999999999999988 78888888887 89999999999
Q ss_pred HHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 354 LLAALKADPKA---AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 354 ~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
|+++++.+|++ +.+++.+|.++..+|++++|+..|++++...|++..+....
T Consensus 62 ~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 62 FRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999 89999999999999999999999999999999987665444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=106.31 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 221 PEELEEILSKLKESMQS---DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.|++++|+..|+++++. +|+++.+++.+|.++...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 57789999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHH
Q 009045 298 CFQDLILKDQNHPAALI 314 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~ 314 (546)
.|++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-12 Score=110.28 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=97.0
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhhC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD------QNHPAALINYAALLLCKYG 325 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~ 325 (546)
++..|++++|...++......+....++..+|.++...|++++|+.+|++++.+. +....++..+|.++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---- 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER---- 77 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH----
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----
Confidence 3568999999996665555334678899999999999999999999999999853 333344555555554
Q ss_pred ccccccccccccchHHHhhcCHHHHHHHHHHHHhc---CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKA---DP----KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
..|++++|+.++++++.+ .+ ....++..+|.++...|++++|+.++++++.+.+
T Consensus 78 -----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 78 -----------------MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 34 2356789999999999999999999999987643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-13 Score=125.77 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHh----------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLA----------------VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILK 305 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (546)
+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56788999999999999999999999998 67777888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|++..+++.+|.++. ..|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus 303 ~p~~~~a~~~lg~~~~---------------------~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQ---------------------GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH---------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887 8888999999999999999999999999999988888887775
Q ss_pred HH
Q 009045 386 KC 387 (546)
Q Consensus 386 ~~ 387 (546)
..
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=107.77 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=80.9
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM----------EQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+.++|++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+++++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999983
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.+.- ........|++++|+.+|+++++++|++.
T Consensus 93 lg~l----------~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFL----------TPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHH----------CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hccc----------CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 2100 00000112467777777777777777653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=105.70 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=79.7
Q ss_pred HcCChHHHHHHHHhhHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc
Q 009045 254 KSGRLQSSISVLSSLLAV---DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 254 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 330 (546)
.+|++++|+..|++++++ +|++..++..+|.+|..+|++++|+.+|+++++.+|++..++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------- 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--------- 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH---------
Confidence 468888899999999988 58888888999999999999999999999999988988888888888877
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANA 374 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 374 (546)
..|++++|+..|++++...|+++.+......+
T Consensus 73 ------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 73 ------------NLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp ------------HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred ------------HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88888999999998888888887765433333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=107.37 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH----- 309 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 309 (546)
...++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 35688999999999999999999999999885533 2588999999999999999999999999876543
Q ss_pred -HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChH
Q 009045 310 -PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK------AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 310 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~ 382 (546)
...+..+| .++...|++++|+.+++++++..+. ...++..+|.++...|+++
T Consensus 88 ~~~~~~~l~---------------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 88 EAQSCYSLG---------------------NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHH---------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH---------------------HHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 23344444 4445999999999999999987432 3567899999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 009045 383 SSGKCLEKAAKLEPN 397 (546)
Q Consensus 383 ~A~~~~~~al~~~p~ 397 (546)
+|+.++++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-10 Score=111.60 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHH
Q 009045 347 VNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWA 426 (546)
Q Consensus 347 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 426 (546)
.......|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...+...+.. .+. . ..+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~--~e~---~---~~~~-- 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV--MDE---E---AVYG-- 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH--TTC---T---HHHH--
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh--cch---h---HHHH--
Confidence 456778999999999999999999999999999999999999999999 9987666544332 000 0 0011
Q ss_pred HHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccch-hhhHHhhHHHHHHHhc-cHHHHHH
Q 009045 427 GNEMASILREGD------PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKM-EECAGAGESAFLDQAS-AVNVAKE 498 (546)
Q Consensus 427 ~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~la~~~~~~g-~~~~A~~ 498 (546)
.+........ ........+|...+......+..+.|...|.++..+. ....|...|.+-...+ +.+.|..
T Consensus 264 --~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 --DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp --HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred --HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence 1111100000 0111234578888888888888999999988872221 2234545555555555 5899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 499 CLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 499 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
.|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988988888888888778888888888887775
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-12 Score=99.87 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
.+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++. ..|++++|+.+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---------------------~~~~~~~A~~~~ 61 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------------------HhccHHHHHHHH
Confidence 46789999999999999999999999999999999999999988887 899999999999
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 355 LAALKADPKA-------AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 355 ~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++++...|.+ ..++..+|.++...|++++|+.+|+++++..| +......++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 9999998877 89999999999999999999999999999998 4555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-11 Score=120.08 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=166.2
Q ss_pred hhhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 009045 92 VEGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAV 171 (546)
Q Consensus 92 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 171 (546)
.++..+.+.|++..++ ..|.+++...+.........+.. ....... ..++..+|.+|...|++++|+
T Consensus 9 ~~a~~l~~~~~y~eA~-~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~----------~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAE-QVYLSLLDKDSSQSSAAAGASVD--DKRRNEQ----------ETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHSCCCSSSBSSSSSBC--SHHHHHH----------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHhhCcccchhHHHHHHH--HHHhhhH----------HHHHHHHHHHHHHCCCHHHHH
Confidence 4677788899999988 99999999998876666666555 2222222 245689999999999999999
Q ss_pred HHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCc------ccHHHH
Q 009045 172 SSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDT------RQAVVW 245 (546)
Q Consensus 172 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~ 245 (546)
++|.+++...+... .......+...++.++. ..|++++|+.++++++...+ ....++
T Consensus 76 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFA------KSKTVKVLKTLIEKFEQ-----------VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHTHHHHHTSC------HHHHHHHHHHHHHHHCS-----------CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHcc------chHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999999865431 11122233444555443 44556999999999987533 346789
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAV------DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 319 (546)
..+|.+|...|+|++|+..+++++.. .+....++..+|.+|..+|++++|...|++++...+.........+.+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 99999999999999999999998875 233467899999999999999999999999998754332222222333
Q ss_pred HHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc
Q 009045 320 LLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360 (546)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 360 (546)
+. ..|.++...+++.+|..+|.++++.
T Consensus 219 ~~--------------~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 219 DL--------------MSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HH--------------HHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HH--------------HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 1245555899999999999999875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=105.27 Aligned_cols=141 Identities=17% Similarity=0.030 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
..++..+|.++...|++++|+.+|++++++.+.. ++....+.++..+|.++.. .|++++|+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~ 71 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------GDKAAERIAYSNLGNAYIF-----------LGEFETASEY 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHH-----------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHH-----------cCCHHHHHHH
Confidence 5688999999999999999999999999987642 2223334566667776644 4556999999
Q ss_pred HHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 231 LKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 231 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++++++..+.. ..++..+|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+.+
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999876543 668899999999999999999999999987332 256789999999999999999999
Q ss_pred HHHHHhhCCC
Q 009045 299 FQDLILKDQN 308 (546)
Q Consensus 299 ~~~al~~~p~ 308 (546)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-09 Score=102.20 Aligned_cols=332 Identities=12% Similarity=-0.012 Sum_probs=193.3
Q ss_pred HHHHHhHhcCCCCcccccccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHhcccchh
Q 009045 109 SKMDSALEFGVDADGDQSGLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQ-PLKAVSSYEKAEEILLRCEAD 187 (546)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 187 (546)
..|++++...|. |.. .+++.+|++++...| +.+.|........+.+. .+.....|+.++.....+
T Consensus 16 ~vyer~l~~~P~--------~~~--e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d--- 81 (493)
T 2uy1_A 16 AIMEHARRLYMS--------KDY--RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY--- 81 (493)
T ss_dssp HHHHHHHHHHHT--------TCH--HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC---
T ss_pred HHHHHHHHHCCC--------CCH--HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC---
Confidence 678889988885 444 899999999999888 88899888888877774 455678889988752100
Q ss_pred ccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHH------------------------
Q 009045 188 IARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAV------------------------ 243 (546)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------ 243 (546)
+.. ..+|...+..+.... ..+++.+.+...|++++..-+.+..
T Consensus 82 ---~~s---~~iW~~Yi~f~~~~~-------~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 82 ---WDS---YGLYKEYIEEEGKIE-------DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp ---TTC---HHHHHHHHHHTSSCS-------SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ---ccc---HHHHHHHHHHHHhch-------hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 100 122222222111100 1356778888899998874222111
Q ss_pred -------------------------HHHHHHHHHHHcCC---------hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc
Q 009045 244 -------------------------VWNTLGLILLKSGR---------LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 244 -------------------------~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 289 (546)
.|... +-+..++ .+.....|++++...|..+.+|...+..+...
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 11111 1112222 23467899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH---HH---HHhcCCC
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL---LA---ALKADPK 363 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---~~---al~~~p~ 363 (546)
|+.+.|...|++++.. |.+...+...+.... +... ++.....+ +. .....+.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e---------------~~~~------~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD---------------EEAV------YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT---------------CTHH------HHHHHHHTC----------CHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc---------------hhHH------HHHHHHHHHhhccchhhhhcccc
Confidence 9999999999999999 998877665444311 0000 01111000 00 0001111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCC
Q 009045 364 AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN-CMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQI 442 (546)
Q Consensus 364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (546)
...+|...+....+.+..+.|...|+++ . .|. ....+...+......
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~------------------------------ 332 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYA------------------------------ 332 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHH------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHH------------------------------
Confidence 3456777777777777788888888888 3 332 222332222211100
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 443 EPPIAWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 443 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
.++.+.|...+...+. +.....|...+......|+.+.|...|+++ +.....|......
T Consensus 333 ---------------~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 333 ---------------TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp ---------------HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1123333333333322 111122333344455566666677666665 3456666666666
Q ss_pred HHhcCChHHHHHHHHHHHHHhc
Q 009045 521 YYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~~ 542 (546)
-...|+.+.+...++++++.+.
T Consensus 394 E~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhc
Confidence 6667777777777777776553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-11 Score=91.65 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.+|...|++++|+..|++++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q 009045 305 KDQN 308 (546)
Q Consensus 305 ~~p~ 308 (546)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 8874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=91.10 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=65.0
Q ss_pred HHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccc
Q 009045 259 QSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEG 338 (546)
Q Consensus 259 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (546)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++.++|.+..++..+|.++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------------- 64 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ----------------- 64 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-----------------
Confidence 356777888888888888888888888888888888888888888888877777777777776
Q ss_pred hHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 339 ACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 339 ~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
..|++++|+..|++++++.|.
T Consensus 65 ----~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 65 ----GQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp ----HHTCHHHHHHHHHHHHHHHHH
T ss_pred ----HcCCHHHHHHHHHHHHHhccc
Confidence 777778888888877777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=96.08 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH------PAALI 314 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 314 (546)
++..++.+|.++...|++++|+..|++++.++|+++.++.++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 67777
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
.++.++.
T Consensus 83 ~~~~~~~ 89 (111)
T 2l6j_A 83 RLELAQG 89 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-11 Score=94.76 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
++.++..+|.++...|++++|+..|+++++++|.+..++.++|.++. ..|++++|+..|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---------------------~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI---------------------KLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HhcCHHHHHHHH
Confidence 36788999999999999999999999999999999999999998888 899999999999
Q ss_pred HHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 355 LAALKADPKA------AHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 355 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
+++++++|++ ..++..+|.++..+|+++.|+..+++
T Consensus 62 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999998 88999999999999988888766654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-10 Score=83.97 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.0
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++++|++..++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 009045 319 LLL 321 (546)
Q Consensus 319 ~~~ 321 (546)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-10 Score=82.69 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHH
Q 009045 274 NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKEC 353 (546)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (546)
.+..+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++. ..|++++|+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~ 65 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY---------------------KQGDYDEAIEY 65 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------------------HHhhHHHHHHH
Confidence 356788899999999999999999999999999999888888888877 88899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 354 LLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 354 ~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
|+++++++|.+..++..+|.++...|
T Consensus 66 ~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 66 YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.5e-10 Score=84.45 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=67.0
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999998664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-09 Score=85.16 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 296 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 296 (546)
.+++++|+..|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 47889999999999988744 344 999999999999999999999987 689999999999999 89999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
.+|+++.+. .++.+.+++|.+|..-.+ -.+++++|+.+|+++.+.. ++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g-----------------~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCC-----------------CCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999986 688999999999872100 1789999999999999873 455555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=82.44 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHH
Q 009045 272 DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAK 351 (546)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (546)
+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..+|.++. ..|++++|+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~ 61 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE---------------------RLDRTDDAI 61 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---------------------HTTCHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------------------HcCCHHHHH
Confidence 57777777777777777777777777777777777777777777777666 677777777
Q ss_pred HHHHHHHhcCC
Q 009045 352 ECLLAALKADP 362 (546)
Q Consensus 352 ~~~~~al~~~p 362 (546)
..|++++++.|
T Consensus 62 ~~~~~al~l~~ 72 (100)
T 3ma5_A 62 DTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 77777776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=85.33 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhHhcCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 246 NTLGLILLKSGRLQSSISVLSSLLAVDPNNCD-CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 246 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
+.+|.++...|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788999999999999999999999999999 9999999999999999999999999999999887763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-09 Score=90.51 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=92.1
Q ss_pred hcCcccHHHHHHHHHHHHH-----cC------ChHHHHHHHHhhHhcCCC--ChHHHHHHHHHHHHc-----CCHHHHHH
Q 009045 236 QSDTRQAVVWNTLGLILLK-----SG------RLQSSISVLSSLLAVDPN--NCDCIGNLGIAYFQS-----GDMEQSAK 297 (546)
Q Consensus 236 ~~~p~~~~~~~~l~~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 297 (546)
+.+|+++..++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888888887776643 13 357899999999999999 677999999999995 99999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 298 CFQDLILKDQNH-PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 298 ~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
+|+++++++|+. ...++.+|..+.. ..|+++++..++++++..+|.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~--------------------~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCI--------------------PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTT--------------------TTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHH--------------------hcCCHHHHHHHHHHHHcCCCC
Confidence 999999999975 9999999888761 359999999999999998776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-08 Score=82.50 Aligned_cols=116 Identities=11% Similarity=-0.000 Sum_probs=100.6
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|..-.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g---------- 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC----------
Confidence 478999999999998863 4444 999999999999999999999986 688999999999872100
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 009045 336 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 396 (546)
-.+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+...
T Consensus 73 -------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 73 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 178999999999999986 679999999999999 9999999999999998743
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=105.17 Aligned_cols=128 Identities=10% Similarity=0.015 Sum_probs=104.5
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH--
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA-- 311 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-- 311 (546)
..+..+..+|+|++|+..+++++++ .|++ ...+.+||.+|..+|+|++|+.++++++.+ .|+++.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445577899999999999999986 3444 567899999999999999999999999975 355554
Q ss_pred -HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCChH
Q 009045 312 -ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPK---AAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 312 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l~~~~~~~g~~~ 382 (546)
.+.++|.+|. .+|++++|+.+|++++++ .|+ .......++.++..++.++
T Consensus 394 ~~l~nLa~~~~---------------------~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 394 MAVMRAGLTNW---------------------HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665 999999999999999975 344 4566788999999999999
Q ss_pred HHHHHHHHHHhcC
Q 009045 383 SSGKCLEKAAKLE 395 (546)
Q Consensus 383 ~A~~~~~~al~~~ 395 (546)
+|...|.++.+..
T Consensus 453 ~ae~~~~~~~~~~ 465 (490)
T 3n71_A 453 QNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=82.86 Aligned_cols=91 Identities=10% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 280 GNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
+.+|.++...|++++|+..|+++++.+|++.. ++..+|.++. ..|++++|+..|++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---------------------~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR---------------------KLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHH
Confidence 56788888888888888888888888888888 8888887777 7888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 359 KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 359 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+++|++..++.. +.+.+++..|++++..+|++.
T Consensus 63 ~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 63 ELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred hcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 888888777643 566777777777777766553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-08 Score=91.08 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=110.3
Q ss_pred HhcCcccHH--HHHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC----HHHHHH----HHHH
Q 009045 235 MQSDTRQAV--VWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD----MEQSAK----CFQD 301 (546)
Q Consensus 235 l~~~p~~~~--~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~~----~~~~ 301 (546)
....|.+.. -++..|..++..+. +.+|+.+|+++++++|+++.++..++.+|..... ...... .++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 344555544 34556777766544 5889999999999999999999999988863211 111111 2222
Q ss_pred --HHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 302 --LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 302 --al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
++..+|.++.++..++..+. ..|++++|+..+++++.++|. ...|..+|.++...|
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l---------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL---------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT
T ss_pred HHhcccCCcCHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC
Confidence 22556888888888777776 679999999999999999975 778899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCChh
Q 009045 380 DHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 380 ~~~~A~~~~~~al~~~p~~~~ 400 (546)
++++|++.|++++.++|....
T Consensus 325 ~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCh
Confidence 999999999999999998754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=80.60 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=92.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---ChHHHHHHHHhhHhcC-C-CChHHHHHHHHHHHHcCCH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~ 292 (546)
.+..+....+.+.|.+.+..++.+..+.+++|.++.+.+ +.++++..|+.+++.+ | +..++++++|..|+++|+|
T Consensus 8 ~l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 466778899999999999999999999999999999988 7779999999999998 7 5689999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
++|+++++++++++|++..+......+-
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999998876554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-09 Score=102.25 Aligned_cols=137 Identities=9% Similarity=0.022 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
...+..+..+|+|++|+..|++++++.-. ...++....+..+.+++.+|..+ |+|++|+.+++++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~----~lg~~Hp~~a~~~~nLa~~y~~~-----------g~~~eA~~~~~~a 377 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEP----VFADTNLYVLRLLSIASEVLSYL-----------QAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTT----TBCTTSHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHH
Confidence 34455677899999999999999998432 12344455567888888887555 4559999999999
Q ss_pred Hhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHH
Q 009045 235 MQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 235 l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+++ .|.-...+++||.+|..+|++++|+..|++++.+ .|++ .....+++.++..++.+++|...
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 4555678999999999999999999999999986 4555 45667899999999999999999
Q ss_pred HHHHHhhC
Q 009045 299 FQDLILKD 306 (546)
Q Consensus 299 ~~~al~~~ 306 (546)
|.++.+..
T Consensus 458 ~~~~~~~~ 465 (490)
T 3n71_A 458 YHKMREAA 465 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-08 Score=89.64 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=100.3
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh----HHHHH----HHH--hhHhcCCCChHHHHHHHHHHHHc
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL----QSSIS----VLS--SLLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----~~A~~----~~~--~al~~~p~~~~~~~~la~~~~~~ 289 (546)
...++.+|+.+|+++++++|+++.++..++.+|.....+ ..... .++ .++..+|.++.++..++..+...
T Consensus 211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 346679999999999999999999999888888632111 11111 222 23456799999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
|++++|+..+++++.++|+ ..++..+|.++. ..|++++|++.|++++.++|....
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~---------------------~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYE---------------------MKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999999974 566677777776 899999999999999999998653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=73.00 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHHHHHcCC---hHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 238 DTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
+|+++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999987766 79999999999999999999999999999999999999999999999999844
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-07 Score=84.01 Aligned_cols=113 Identities=8% Similarity=0.045 Sum_probs=92.6
Q ss_pred hcCCCChHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhhCccccccccccc
Q 009045 270 AVDPNNCDCIGNLGIAYFQ---S--G------DMEQSAKCFQDLILKDQN--HPAALINYAALLLCKYGSVLAGAGANTG 336 (546)
Q Consensus 270 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 336 (546)
..+|+++++++..|.+... . | ....|...++++++++|+ +..++..+|.+|...-.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp----------- 214 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPE----------- 214 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCT-----------
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCC-----------
Confidence 4578888888888777643 1 3 357899999999999999 56689888888862100
Q ss_pred cchHHHhhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCC
Q 009045 337 EGACLDQASAVNVAKECLLAALKADPKA-AHIWANLANAYYL-TGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 337 ~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 398 (546)
..-|+.++|..+|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 215 -----~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 215 -----SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp -----TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred -----ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 01599999999999999999974 9999999999988 599999999999999998874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-07 Score=67.54 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 009045 306 DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385 (546)
Q Consensus 306 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 385 (546)
+|+++..+..+|.+++... .....++|...++++++.+|+++.++..+|..++..|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~------------------~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLH------------------KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTT------------------TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc------------------CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5888999999998886210 1122799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCh
Q 009045 386 KCLEKAAKLEPNCM 399 (546)
Q Consensus 386 ~~~~~al~~~p~~~ 399 (546)
.+|+++++.+|.++
T Consensus 64 ~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 64 DTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHTCCCTTC
T ss_pred HHHHHHHhhCCCCc
Confidence 99999999999843
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-07 Score=71.95 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhc---CHHHHHHHHHHHHhcC-C-CCH
Q 009045 291 DMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQAS---AVNVAKECLLAALKAD-P-KAA 365 (546)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~ 365 (546)
....+.+.|.+.++.++.+.++.++++.++. +.+ ++++++..++..++.+ | +..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv---------------------~S~~~~~~~~gI~lLe~ll~~~~p~~~r 71 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV---------------------RSKYNDDIRKGIVLLEELLPKGSKEEQR 71 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------------TCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHH---------------------cCCCHHHHHHHHHHHHHHHhcCCccchH
Confidence 3466788888888888999999999999998 544 7789999999999998 7 578
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
++++++|..++++|+|++|+.+++++++++|++..+....
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999998776544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-07 Score=68.72 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-------PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 313 (546)
++.-.+.+|..++..|+|..|+..|+++++.. +....++..+|.+++++|+++.|+..+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 34578899999999999999999999999999999999988
Q ss_pred HHHH
Q 009045 314 INYA 317 (546)
Q Consensus 314 ~~l~ 317 (546)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-07 Score=89.08 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=79.0
Q ss_pred ChhhHHHHHHHHHHHHhc-----C---cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CC---CChHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQS-----D---TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DP---NNCDCIGNLG 283 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la 283 (546)
..|+|++|+..|++++++ . |.-...+.++|.+|..+|+|++|+.++++++.+ .| +-...+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346789999999999874 3 444568899999999999999999999999976 34 4456799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009045 284 IAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 313 (546)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 313 (546)
.+|..+|++++|+..|++++++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999975 46766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-07 Score=88.25 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=79.7
Q ss_pred cChhhHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc-----CCC---ChHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQS--------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV-----DPN---NCDCIGNL 282 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~l 282 (546)
..+|++++|+..+++++++ +|.-..++.++|.+|..+|+|++|+.++++++.+ .|+ -...+++|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3567889999999999975 3344668899999999999999999999999976 334 45678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009045 283 GIAYFQSGDMEQSAKCFQDLILK-----DQNHPAAL 313 (546)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 313 (546)
|.+|..+|++++|+.+|++++++ .|+++.+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999975 56776554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-06 Score=85.16 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---H
Q 009045 249 GLILLKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---A 312 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 312 (546)
..-+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466789999999999999976 3444 567899999999999999999999999975 355554 3
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAA---HIWANLANAYYL 377 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~ 377 (546)
+.++|.+|. .+|++++|+.+|++++++ .|+++ .++.+|+.+...
T Consensus 374 l~nLa~~~~---------------------~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQL---------------------HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------------hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 556666665 999999999999999976 45544 444556655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-06 Score=63.19 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-------QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (546)
.+.-++.+|..++..|+|..|+.+|+.+++.. +.....+..+|.++. +.|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~---------------------~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY---------------------QQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH---------------------HTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH---------------------HccCH
Confidence 35668899999999999999999999999864 234556667777666 99999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 348 NVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 348 ~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
++|+.++++++++.|++..+..+++
T Consensus 63 ~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 9999999999999999999888776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=82.49 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=75.6
Q ss_pred HHcCChHHHHHHHHhhHhc-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAV-----DPNN---CDCIGNLGIAYFQSGDMEQSAKCFQDLILK-----DQNHPA---ALINY 316 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l 316 (546)
...|+|++|+..|++++++ .|++ ...+.+||.+|..+|+|++|+.++++++.+ .|+++. .+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3468999999999999985 4555 467889999999999999999999999975 355554 45666
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc-----CCCCHHH
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA-----DPKAAHI 367 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 367 (546)
|.+|. .+|++++|+.+|++++++ .|+++.+
T Consensus 389 a~~~~---------------------~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYM---------------------GLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHH---------------------HTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHH---------------------hccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 66665 999999999999999986 4555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0002 Score=70.84 Aligned_cols=188 Identities=7% Similarity=0.063 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHH
Q 009045 153 AHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLK 232 (546)
Q Consensus 153 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~ 232 (546)
.+..+-..+.+.|++++|+..|++..+..- .|+......+... +...+.. ......+.+++|...|+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-------~pd~~tyn~Li~~----c~~~~~~--~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGV-------QLSQYHYNVLLYV----CSLAEAA--TESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHH----HTTCCCC--SSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHH----HHhCCch--hhhhhcchHHHHHHHHH
Confidence 355566788899999999999999987632 3333222222211 1111111 11346788999999999
Q ss_pred HHHhcC-cccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Q 009045 233 ESMQSD-TRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ-NH 309 (546)
Q Consensus 233 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~ 309 (546)
++.... ..+...|..+...|.+.|++++|...|++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+..- -+
T Consensus 95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 987653 2357789999999999999999999999987752 22577889999999999999999999999887532 24
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA--DPKAAHIWANLANAY 375 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 375 (546)
...+..+...+. +.|+.++|.+++++.-+. .|+ ..++..+-..+
T Consensus 175 ~~ty~~Li~~~~---------------------~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 175 EPELAALLKVSM---------------------DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 556666666665 899999999999998764 344 44444444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.30 E-value=8.1e-06 Score=62.22 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHH---HHHHHHhhHhcC-C-CChHHHHHHHHHHHHcCCHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQS---SISVLSSLLAVD-P-NNCDCIGNLGIAYFQSGDMEQSA 296 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 296 (546)
.....+...|.+.+..++....+.+++|.++.+..+... ++..++..+..+ | ...+.++.||..++++|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445778888888888888889999999999999887777 999999999887 5 56789999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 009045 297 KCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~ 318 (546)
.+++.+|+..|++..+......
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999888654433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00018 Score=71.21 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=122.9
Q ss_pred cChhhHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC---------hHHHHHHHHhhHhcCC-CChHHHHHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSD-TRQAVVWNTLGLILLKSGR---------LQSSISVLSSLLAVDP-NNCDCIGNLGIAYF 287 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 287 (546)
.+.|++++|+.+|+++.+.. +-+...|..+-.++...+. .++|.+.|++.....- -+...|..+...|.
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46778899999999998753 2245667777666665443 6889999998876532 25778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-CH
Q 009045 288 QSGDMEQSAKCFQDLILKD-QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-AA 365 (546)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 365 (546)
+.|++++|.+.|++..+.. .-+..++..+...+. +.|++++|.+.|++..+..-. +.
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~---------------------~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC---------------------RKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH---------------------HCCCHHHHHHHHHHHHhcCCCCCH
Confidence 9999999999999988753 225566666666665 899999999999999875322 57
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKL 394 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 394 (546)
..|..+..+|.+.|+.++|..++++..+.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.2e-05 Score=59.44 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=65.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccc
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQP------LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKE 218 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (546)
-..|++++.|..........|+. ++-+..|++|+...|-.. ...+...+.+|...+..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wrrYI~LWIrYA~~------------ 70 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNESFARIQVRFAEL------------ 70 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCHHHHHHHHHHHHH------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHHHHHHHHHHHHHH------------
Confidence 45799999999999999999999 899999999999866442 22333333344333321
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 274 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 274 (546)
...++.++|...|+.++......+.+|...|..-.++|+...|.+.+.+++.+.|.
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 12233345555555554444444445555555555555555555555555554444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.00 E-value=9.1e-05 Score=56.44 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC-C-CCHHH
Q 009045 290 GDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD-P-KAAHI 367 (546)
Q Consensus 290 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p-~~~~~ 367 (546)
.....+.+.|.+.+..++....+.++++.++.... ...+..+++.+++..+..+ | ..-+.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~------------------~~~d~~~GI~lLe~l~~~~~p~~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR------------------YNDDIRKGIVLLEELLPKGSKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS------------------SHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34566778888888888888999999999887210 2334456999999999887 5 56789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 368 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
++.||..++++|+|++|..+++.+++..|++..+....
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999998766433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0004 Score=54.03 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=75.4
Q ss_pred cCCCChHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhhCccccccccccccchHHHh
Q 009045 271 VDPNNCDCIGNLGIAYFQSGDM------EQSAKCFQDLILKDQNHP-AALINYAALLLCKYGSVLAGAGANTGEGACLDQ 343 (546)
Q Consensus 271 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (546)
+.|++++.|..........|+. ++-++.|++++..-|... ..|..+..+.... + .+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrY--------------A-~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRF--------------A-ELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHH--------------H-HHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH--------------H-HHHH
Confidence 3566666666666666655666 666666666665543211 1111111111110 0 1125
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009045 344 ASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~ 411 (546)
.++.++|.+.|+.+++++...+.+|...|..-.++|+...|...+.+++.+.|..... ...++..+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~ 139 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLN 139 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhh
Confidence 5778888888888887777778888888888888888888888888888888765433 333343333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0011 Score=51.21 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=80.6
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh---HHHHHHHHhhHhcCC-CChHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDP-NNCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~ 294 (546)
+...++......|.+-.. +.-...+.+++|+++.+..+. .+++..++..+...| ...+.++.||..++++|+|++
T Consensus 17 l~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 17 LYPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp CCHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 455666777777765422 345688999999999998755 579999999999888 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+.+|+..|++..+......
T Consensus 96 Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 96 AKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999887654433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00095 Score=50.95 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=80.0
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCh---HHHHHHHHhhHhcCCC-ChHHHHHHHHHHHHcCCHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRL---QSSISVLSSLLAVDPN-NCDCIGNLGIAYFQSGDMEQ 294 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~ 294 (546)
+...++....+.|.+-+ ...-.+.+.+++|.++.+..+. .+++..++..++.+|. ..+.++.+|..++++|+|++
T Consensus 18 ~~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 18 LYPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp CCHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHH
Confidence 45566667777776644 3333578999999999988754 5799999999998884 57899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNHPAALINYAA 318 (546)
Q Consensus 295 A~~~~~~al~~~p~~~~~~~~l~~ 318 (546)
|.++.+.+++..|++..+......
T Consensus 97 Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 97 AKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999999999988654443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0002 Score=57.19 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=76.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHcCChHHHHHHHHhhHhc------CC---------
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQ---------AVVWNTLGLILLKSGRLQSSISVLSSLLAV------DP--------- 273 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p--------- 273 (546)
+++.+.|+.|+-....++....++ ..++..+|.+++..++|..|...|++++.. .+
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 456677899999998877654333 348899999999999999999999998764 11
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 274 ----------NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 274 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+.++.+.++.||..+|++++|+..++.+- ..-..+.....+|.+|
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 112688999999999999999999987642 2334555556666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00062 Score=54.34 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ---NHP 310 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~ 310 (546)
.+++.....++..|.|+.|+-....++.+..++ ..++..+|.+++..|+|..|...|+++++... ...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356667777889999999999999887764333 34789999999999999999999999987642 222
Q ss_pred HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
.....++. . .... ....+ +.+.++.+.++.||..+|++++|+..++.
T Consensus 101 s~~~~~~~-~------------------------ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGN-S------------------------ASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred Cccccccc-c------------------------CCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11111110 0 0000 01112 34577888888888888888888888765
Q ss_pred H
Q 009045 391 A 391 (546)
Q Consensus 391 a 391 (546)
+
T Consensus 148 I 148 (167)
T 3ffl_A 148 I 148 (167)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=50.00 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
...+..+++.+++..++.+| ..-+.++.+|..+++.|+|++|..+.+.+++..|++..+......+
T Consensus 55 ~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 55 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34677899999999999998 4578999999999999999999999999999999998877655444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.023 Score=53.39 Aligned_cols=196 Identities=9% Similarity=0.049 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
-.+.+.||.+|...|++++-.+++.......+.-..+ .. +.+-..+...+.... +..+.-++.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka----k~---~k~v~~l~~~~~~~~----------~~~~~~~~~ 81 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA----KA---AKLVRSLVDMFLDMD----------AGTGIEVQL 81 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH----HH---HHHHHHHHHHHTTSC----------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH----HH---HHHHHHHHHHHhcCC----------CcHHHHHHH
Confidence 4577899999999999999998888775543322111 11 111112211111111 223444555
Q ss_pred HHHHHhcCccc----HH--HHHHHHHHHHHcCChHHHHHHHHhhHhcCC--C----ChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 231 LKESMQSDTRQ----AV--VWNTLGLILLKSGRLQSSISVLSSLLAVDP--N----NCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 231 ~~~al~~~p~~----~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..+++-..+. -. .-..+|..|+..|+|.+|.+.+.+.++... + -.+++..-..+|..++++.++...
T Consensus 82 ~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 82 CKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 55555422221 11 233799999999999999999998876422 1 145677788899999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHHHhhCccccccccccccchHHH-hhcCHHHHHHHHHHHHhcCCC-----CHHHHH
Q 009045 299 FQDLILKDQ---NHPAALINYAALLLCKYGSVLAGAGANTGEGACLD-QASAVNVAKECLLAALKADPK-----AAHIWA 369 (546)
Q Consensus 299 ~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~-----~~~~~~ 369 (546)
|.++..... .++.. .|.+... -|..+. ..++|..|...|-.+++.... ...+..
T Consensus 162 l~~a~~~~~ai~~~p~i---~a~i~~~--------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lk 224 (394)
T 3txn_A 162 LTSARTTANAIYCPPKV---QGALDLQ--------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLK 224 (394)
T ss_dssp HHHHHHHHHHSCCCHHH---HHHHHHH--------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhhhccCCCCHHH---HHHHHHH--------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 999976531 22222 2322221 267777 799999999999998765433 123344
Q ss_pred HHHHHHHHcCC
Q 009045 370 NLANAYYLTGD 380 (546)
Q Consensus 370 ~l~~~~~~~g~ 380 (546)
.++.+-...++
T Consensus 225 YlvL~aLl~~~ 235 (394)
T 3txn_A 225 YMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 45555555555
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.03 Score=43.35 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIA 285 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 285 (546)
.+..+++.+++..+...| ..-+.++.+|..++++|+|++|..+.+.+++..|+|..+......+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344667777777777666 4567899999999999999999999999999999998776654433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.1 Score=49.10 Aligned_cols=175 Identities=10% Similarity=-0.055 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-hhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKD-AERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
.+.+.||.+|...|++++-..++......-+.-+.+........+-+ ........+. ...-+...+..........
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGI---EVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHH---HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34577888899999888888888776655555444444332222211 1111111111 1111111111111000000
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHhhccc--------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC---CCC-
Q 009045 445 --PIAWAGFAAVQKTHHEVAAAFETEENELSK--------MEECAGAGESAFLDQASAVNVAKECLLAALKAD---PKA- 510 (546)
Q Consensus 445 --~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~- 510 (546)
...-..+|..|...|++.+|...+.+.... .-.+.+.....+|...+++.++...+.++.... +.+
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 012237899999999999999888774431 111445566778999999999999999987643 122
Q ss_pred ---HHHHHHHHHHHH-hcCChHHHHHHHHHHHHHhcc
Q 009045 511 ---AHIWANLANAYY-LTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 511 ---~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~ 543 (546)
+.....-|.++. ..++|..|..+|-++++-|.+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 345566788888 899999999999999877653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.04 Score=56.42 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 484 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 484 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+..+...|+++-|+++.++++...|.....|+.|+.||..+|+|+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 446778899999999999999999999999999999999999999999776543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.85 Score=45.87 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=32.4
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009045 489 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLM 539 (546)
Q Consensus 489 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (546)
+.|+++.|...|+..-..........|++|.++...|+.++|..+|+++.+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 457777777766654433233456667777777777777777777766653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.028 Score=57.49 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=83.7
Q ss_pred HcCC-hHHHHHHHHhhHhcCCCChHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhh--------CCCCHHHHH---HHHH
Q 009045 254 KSGR-LQSSISVLSSLLAVDPNNCDCIGNLGIAYF--QS-GDMEQSAKCFQDLILK--------DQNHPAALI---NYAA 318 (546)
Q Consensus 254 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~~~~~~---~l~~ 318 (546)
..++ ++.|+..|++....+|.... ++..+.+.. .. .+--+|+..+.+.++. .+.+..... ..+.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 58899999999988886543 333332222 12 2344677777776642 233322211 1111
Q ss_pred HHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 319 LLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
++.. .+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~--------------Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNI--------------QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHH--------------HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111 2445558899999999999999999999999999999999999999999988776
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.3 Score=47.19 Aligned_cols=193 Identities=11% Similarity=0.021 Sum_probs=122.1
Q ss_pred hcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhcc
Q 009045 344 ASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 417 (546)
Q Consensus 344 ~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~ 417 (546)
.|+++.|++.+....+. .+....+...+..++...|+|+...+.+.-..+.......+...+....+.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36688888877544432 223577888899999999999998887766555444333332222221111111100
Q ss_pred CchhHHHHHHHHHHHHHhcCC-----CCCC--CcHHHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhh
Q 009045 418 EPTEQLSWAGNEMASILREGD-----PVQI--EPPIAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAG 482 (546)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~ 482 (546)
.. .. ......+.... .+.. ........++.++...|++.+|...+..... ......+..
T Consensus 109 ~~--d~----~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 109 SL--DL----NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILE 182 (445)
T ss_dssp TT--HH----HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred ch--hH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00 00 00111111111 1111 2445678899999999999999998877322 112255667
Q ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 009045 483 ESAFLDQASAVNVAKECLLAALK---ADPKA----AHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 483 la~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 542 (546)
...++...+++.+|...++++.. ..+.. ...+...|.++...++|.+|..+|..+++.+.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 77889999999999999998743 23333 34667889999999999999999999987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.85 Score=48.02 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred HHHHcCChHHHHH-HHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccc
Q 009045 251 ILLKSGRLQSSIS-VLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLA 329 (546)
Q Consensus 251 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 329 (546)
.....+++++|.. .+.. -| +...+..+...+...|.+++|++..+ +....+.+ ..
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l-------- 663 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFEL---AL-------- 663 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HH--------
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchheeh---hh--------
Confidence 3456789999876 4311 11 02223666777888899888876653 22222222 22
Q ss_pred ccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
..|++++|.+..+ ..++...|..+|..+...|+++.|..+|.++-
T Consensus 664 -------------~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 -------------KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp -------------HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------------hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7899999988764 33568899999999999999999999999863
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.13 Score=44.73 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=56.0
Q ss_pred HhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChh
Q 009045 342 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400 (546)
Q Consensus 342 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 400 (546)
.+.|++++|+......++.+|.+......+..++.-.|+|+.|...++.+.+++|+...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 37899999999999999999999999999999999999999999999999999998753
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.38 Score=38.19 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC--CCCHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL--KD--QNHPAALINYA 317 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~--p~~~~~~~~l~ 317 (546)
++....++.+++-.|.|..++-.+.+ -+...+.+.-+.+|..+.++..|+..++..+. .+ |+- ++. +-
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~--~~ 104 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR--IQ 104 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH--HH
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc--cc
Confidence 34445566666666776666655443 23345555666666667777777776666662 22 211 111 00
Q ss_pred HHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 009045 318 ALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-IWANLANAYYLTGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 396 (546)
..-.+|.+-+ .+..+|.++.+.|+.++|+.+|.......|
T Consensus 105 ---------------------------------------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 105 ---------------------------------------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp ---------------------------------------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 0112455554 456779999999999999999999999888
Q ss_pred CChh
Q 009045 397 NCMS 400 (546)
Q Consensus 397 ~~~~ 400 (546)
-.+.
T Consensus 146 lf~~ 149 (242)
T 3kae_A 146 LFSP 149 (242)
T ss_dssp CHHH
T ss_pred ccch
Confidence 6543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.11 Score=54.83 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=22.8
Q ss_pred HHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 253 LKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 253 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
...|++++|.+..+. .++...|..+|..+...|+++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555554332 133455555555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=1.6 Score=43.92 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=78.2
Q ss_pred HHHHHHcCChHHHHHHHHhhHhcCCCCh-H---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 249 GLILLKSGRLQSSISVLSSLLAVDPNNC-D---CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 249 ~~~~~~~g~~~~A~~~~~~al~~~p~~~-~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
+.......+.+.|...+.+......-+. . .+..++.-....+...++...+.+...... +......++...+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Al--- 296 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMAL--- 296 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHH---
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHH---
Confidence 4444455577888888877654322222 1 222233333334435567777777654333 3322222222222
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
+.|+++.|..+|.+.-..........+.+|.++...|+.++|..+|+++..
T Consensus 297 ------------------r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 ------------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ------------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------------------HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 679999999999876554445688899999999999999999999999986
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.38 Score=39.10 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDL 302 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (546)
+...+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|.++
T Consensus 8 ~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 8 PHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444 4667777777776554 45667777777777777777777777765
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.32 Score=42.41 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
+.+.|..++|++.....++.+|.+......+..++.-.|+++.|.+.++.+.+++|.....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 4556677777777777777777777777777777777777777777777777777765443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.1 Score=42.44 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=55.2
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++.|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 45778899999988765 5678999999999999999999999998632 3345556667777765554
Q ss_pred HHHHHH
Q 009045 298 CFQDLI 303 (546)
Q Consensus 298 ~~~~al 303 (546)
.-+.+.
T Consensus 82 la~iA~ 87 (177)
T 3mkq_B 82 MQNIAQ 87 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.65 Score=36.91 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----CCCChHHHHHHHHHHHHcCCHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQS 295 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A 295 (546)
-.|.+..++-.+. .-+...+.+..+.||...++|..|+.++++.+.- +|+ .++..
T Consensus 45 yngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~-~d~~~--------------- 103 (242)
T 3kae_A 45 LNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD-VDARI--------------- 103 (242)
T ss_dssp HTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC-CCHHH---------------
T ss_pred hcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-ccccc---------------
Confidence 3456666655543 2345677788899999999999999999999943 333 11111
Q ss_pred HHHHHHHHhhCCCCHHHHH-HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 296 AKCFQDLILKDQNHPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 296 ~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
+..-.+|.+.+... .+|.++. +.|+.++|+.+|.......|
T Consensus 104 -----~~ffvd~~DkEfFy~l~a~llt---------------------q~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 104 -----QEMFVDPGDEEFFESLLGDLCT---------------------LSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp -----HTTSCCTTCHHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCC
T ss_pred -----ceeeeccchHHHHHHHHHHHHH---------------------HhcCHHHhhhHhhhhcCCcc
Confidence 11224566666543 3444444 78888888888887766554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.51 Score=44.66 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
.+...++..+...|++.+|+..+.+++..+|-+-.++..+-.++...|+..+|+..|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999988754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.1 Score=50.80 Aligned_cols=79 Identities=20% Similarity=0.097 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
.+..+|.+......+..|..+|.+|+.+.|++...+..||.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999999999999999999999998887788899888887764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.6 Score=47.96 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 247 TLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 247 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
.+...+...++++-+.+ .+...|.++...+.+|.++...|++++|..+|+++.
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34455666677766544 234456677777888888888888888888888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=2.9 Score=40.27 Aligned_cols=200 Identities=10% Similarity=-0.008 Sum_probs=111.5
Q ss_pred cChhhHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCH
Q 009045 219 LEPEELEEILSKLKESMQS------DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 292 (546)
+..+++.+|++.+...-+. .+....+...+..++...|+|+...+.+.-..+.......+...+....
T Consensus 27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~------ 100 (445)
T 4b4t_P 27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKV------ 100 (445)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHH------
T ss_pred HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHH------
Confidence 3568889998877544332 2234567788888999999999887777655544433322222222111
Q ss_pred HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-hCcccc---ccccccccchHHHhhcCHHHHHHHHHHHHhc-C---CC
Q 009045 293 EQSAKCFQDLILKDQNH-PAALINYAALLLCK-YGSVLA---GAGANTGEGACLDQASAVNVAKECLLAALKA-D---PK 363 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~---p~ 363 (546)
+.++ ...|.. ......+...+... .++... .+.....++.++...|++.+|...+.....- . +.
T Consensus 101 ---~~~l----~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 101 ---MEYL----KSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp ---HHHH----HHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred ---HHHH----hcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 1111 111111 00010000000000 000000 0111123567777999999999999887532 1 11
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-c--CCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCC
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAK-L--EPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGD 438 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (546)
-.+.+.....+|...+++..|...++++.. . .+..+..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l------------------------------------- 216 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL------------------------------------- 216 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH-------------------------------------
Confidence 256778888999999999999999988742 1 2222111
Q ss_pred CCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhcc
Q 009045 439 PVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELS 473 (546)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 473 (546)
....+...|.++...++|.+|...|.....
T Consensus 217 -----k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 -----KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp -----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 013466677888888888888887776443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.27 Score=47.26 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=86.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP---NNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
...+++.+..+.+-...+..-..++..+|..|.+.|++++|.+.|.++..... ...+.+..+..++...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34455555544432222333455788999999999999999999999887633 336788889999999999999999
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 298 CFQDLILKD--QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 298 ~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
.+.++.... ..++.....+ .++. |.++...++|..|...|-.++....
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~l-k~~~----------------gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRY-KTYY----------------GIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHH-HHHH----------------HHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhcCCCHHHHHHH-HHHH----------------HHHHHHhChHHHHHHHHHHHhccCC
Confidence 999987653 2233322211 2222 4445578899999998888876644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.78 Score=43.35 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=67.8
Q ss_pred HHHcCChHHHHHHHHhhHhcCCCC----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 009045 252 LLKSGRLQSSISVLSSLLAVDPNN----------------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH 309 (546)
Q Consensus 252 ~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (546)
....|+.+.|...+.+++.+.... ..+...++..+...|++.+|+..+.+++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 334567777777777777663211 1234456778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHh
Q 009045 310 PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALK 359 (546)
Q Consensus 310 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 359 (546)
...+..+..++. ..|+..+|+..|+++-+
T Consensus 205 E~~~~~lm~al~---------------------~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 EPLWTQLITAYY---------------------LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHH
Confidence 999988888887 89999999999987644
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.68 Score=44.79 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHHHcCChHHHHHHHHhhHh-----------cCCCChHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh-----
Q 009045 251 ILLKSGRLQSSISVLSSLLA-----------VDPNNCDCIGNLGIAYFQSGDMEQSAK----------CFQDLIL----- 304 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~~----------~~~~al~----- 304 (546)
.++..+++++|.++-...+. +++-.+.+|+..+.++...|+...... .+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 35667888888887765541 144456778888888888887665322 2222222
Q ss_pred hCCCCHHH-HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHH
Q 009045 305 KDQNHPAA-LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYY 376 (546)
Q Consensus 305 ~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~ 376 (546)
.++..... +..+-+. |...+.++.|..+..++. .|. ....++.+|.++.
T Consensus 225 ~D~~~qa~l~nllLRn---------------------YL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 225 HDNETKAMLINLILRD---------------------FLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp SSSCHHHHHHHHHHHH---------------------HHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHH---------------------HHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 12222222 2222333 448899999999999985 443 2566788999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCh
Q 009045 377 LTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 377 ~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
..++|.+|..++..|++..|.+.
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhccHHHHHHHHHHHHHhCCcch
Confidence 99999999999999999888654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.53 Score=45.84 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
.+..||.+......+..|..+|.+|+.+.|++...+..+|.+.. ..|+.-+|+-+|-++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~---------------------~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS---------------------SKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------HTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh---------------------cccccHHHHHHHHHH
Confidence 56778999988999999999999999999999999999999887 678888899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHH
Q 009045 358 LKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~ 377 (546)
+......+.+..++..++..
T Consensus 213 l~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 213 IAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HSSSBCCHHHHHHHHHHHHH
T ss_pred HhcCCCChhHHHHHHHHHHH
Confidence 98777778888888877754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.87 Score=43.70 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHH
Q 009045 273 PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNH---PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNV 349 (546)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (546)
.....++..+|..|...|++++|.+.|.++....... .+.+.....++. ..+++..
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l---------------------~~~d~~~ 186 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF---------------------FYNDQLY 186 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH---------------------HHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH---------------------HhccHHH
Confidence 3446688999999999999999999999988764332 233444444444 7899999
Q ss_pred HHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 009045 350 AKECLLAALKADP--KA----AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 350 A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 397 (546)
+...+.++..... .+ .......|.++...++|.+|...|-.++.....
T Consensus 187 ~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 9999999866522 12 234556688888999999999999988765443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=1.6 Score=46.05 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhc----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAV----DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKD-QNHPAALIN 315 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 315 (546)
....+..+-..|.+.|+.++|...|....+. ..-+...|..+...|.+.|+.++|.+.|++..... .-+..+|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457888999999999999999999765432 22357899999999999999999999999998653 224555655
Q ss_pred HHHHHHHhhCccccccccccccchHHHhhcC-HHHHHHHHHHHHhcC
Q 009045 316 YAALLLCKYGSVLAGAGANTGEGACLDQASA-VNVAKECLLAALKAD 361 (546)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~ 361 (546)
+...+. +.|+ .++|.++|++..+..
T Consensus 206 LI~glc---------------------K~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMG---------------------RQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHH---------------------HHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHH---------------------hCCCcHHHHHHHHHHHHHcC
Confidence 555554 6776 578899999988753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.94 Score=47.77 Aligned_cols=96 Identities=9% Similarity=-0.060 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhcc------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELS------KMEECAGAGESAFLDQASAVNVAKECLLAALKAD-PKAAHIWANLA 518 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 518 (546)
..+..+...+.+.|+.++|...+..... ..+...|..+-..|++.|++++|.+.|++..+.. .-+..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4688899999999999999999965321 2345677788889999999999999999998753 23577888888
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHHh
Q 009045 519 NAYYLTGDH-RSSGKCLEKVLMVY 541 (546)
Q Consensus 519 ~~~~~~g~~-~~A~~~~~~al~~~ 541 (546)
.++.+.|+. ++|.+.|++..+.-
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 899999985 78899999887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.81 E-value=3.7 Score=45.06 Aligned_cols=70 Identities=11% Similarity=-0.029 Sum_probs=46.4
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcC-CC----------------------ChHHHHHHHHHHHHcCCHH
Q 009045 237 SDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVD-PN----------------------NCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 237 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~----------------------~~~~~~~la~~~~~~g~~~ 293 (546)
..|.++...+.+|.++...|++++|..+|+++-.-- .+ .+..|..+..++.+.|.++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 345667778999999999999999999999984321 11 1223444555555566666
Q ss_pred HHHHHHHHHHhhC
Q 009045 294 QSAKCFQDLILKD 306 (546)
Q Consensus 294 ~A~~~~~~al~~~ 306 (546)
.+++.-+.|++..
T Consensus 917 ~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 917 DALEFSLLADASK 929 (1139)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 6666666666543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.13 E-value=1.1 Score=43.30 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
|+-.+.+|+..+.++...|+.............+ .+.+..
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~i---------r~~Ll~------------------------------- 216 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIIL---------RSTMMK------------------------------- 216 (523)
T ss_dssp --------------------------CHHHHHHH---------HTHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhH---------HHHHHH-------------------------------
Confidence 4556778888888888888777665555554444 111111
Q ss_pred HHHHHHHH-HhcCc-ccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHH
Q 009045 227 ILSKLKES-MQSDT-RQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 227 A~~~~~~a-l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++.+ ++.++ ..+..+..+-+.|...+.|+.|.....++. .|.. ...++.+|.++.-+++|.+|.+
T Consensus 217 ---~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~ 291 (523)
T 4b4t_S 217 ---FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291 (523)
T ss_dssp ---HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11111 11222 235577788889999999999999999885 3422 4567788999999999999999
Q ss_pred HHHHHHhhCCCCH
Q 009045 298 CFQDLILKDQNHP 310 (546)
Q Consensus 298 ~~~~al~~~p~~~ 310 (546)
++..|+...|.+.
T Consensus 292 ~L~~A~rkap~~~ 304 (523)
T 4b4t_S 292 YIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHTSSCSCSS
T ss_pred HHHHHHHhCCcch
Confidence 9999998877543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.24 E-value=24 Score=37.15 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
.-+++.+|.++...+ .+++..+...+.......... ....... .+-.++|.++...|+ +++.+.
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~-~~~~ir~-gAaLGLGla~~GS~~------------eev~e~ 476 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDE-DVDVLLH-GASLGIGLAAMGSAN------------IEVYEA 476 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCH-HHHHHHH-HHHHHHHHHSTTCCC------------HHHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCcccccccc-ccHHHHH-HHHHHHHHHhcCCCC------------HHHHHH
Confidence 445666666665544 478887877776421000000 0112222 233466666543333 567777
Q ss_pred HHHHHhcCcccH--HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009045 231 LKESMQSDTRQA--VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303 (546)
Q Consensus 231 ~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (546)
+...+..+.... .+-+.+|.++.-.|+-+-....+..+.+...+...-...+|......|+.+.+....+...
T Consensus 477 L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 477 LKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 777776443221 3455677778788876655555555554333322223344444556777766665555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.90 E-value=24 Score=31.74 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHhhH----------------h---cCCCChHHHHHHHH-HHHHcCCHHHHHHH
Q 009045 239 TRQAVVWNTLGLILLKSGRLQSSISVLSSLL----------------A---VDPNNCDCIGNLGI-AYFQSGDMEQSAKC 298 (546)
Q Consensus 239 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------~---~~p~~~~~~~~la~-~~~~~g~~~~A~~~ 298 (546)
-.++..+..+|..|+..|++.+|..+|-..- + -.|.....+...+. .|..+|+...|...
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3578999999999999999999999885331 1 11222333333333 45678888888888
Q ss_pred HHHHHh
Q 009045 299 FQDLIL 304 (546)
Q Consensus 299 ~~~al~ 304 (546)
|+...+
T Consensus 211 ~~~f~~ 216 (312)
T 2wpv_A 211 KDIFLE 216 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 546 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.001 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-09 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.001 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.002 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-06 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 8e-06 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 5e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.9 bits (193), Expect = 2e-16
Identities = 40/268 (14%), Positives = 86/268 (32%), Gaps = 46/268 (17%)
Query: 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
P A A LG ++ G+ A+ +EKA + + + ++L +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDA-YINLGNVLKEA--- 216
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
+ ++ ++ AVV L + + G + +I
Sbjct: 217 ---------------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326
+ + P+ D NL A + G + ++ C+ + H +L N A +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR----- 316
Query: 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGK 386
+ + A AL+ P+ A +NLA+ G + +
Sbjct: 317 ----------------EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 387 CLEKAAKLEPNCMSTRY--AVAVSRIKD 412
++A ++ P + ++D
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (175), Expect = 3e-14
Identities = 58/353 (16%), Positives = 110/353 (31%), Gaps = 37/353 (10%)
Query: 223 ELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNL 282
+ E + + + V L I + RL S + + +P + NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 283 GIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG-------------SVLA 329
G Y + G ++++ + ++ + + IN AA L+
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 330 GAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE 389
+ G L + AK C L A++ P A W+NL + G+ + E
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 390 KAAKLEPNCMSTRYAVAVS-----RIKDAERSQEPTEQLSW----AGNEMASILRE-GDP 439
KA L+PN + + A + LS +A + E G
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Query: 440 ----------VQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGESA 485
++++P A A +K A L + +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313
Query: 486 FLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
+ + A AL+ P+ A +NLA+ G + + ++ +
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (175), Expect = 4e-14
Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 5/299 (1%)
Query: 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307
L ++G +++ L +P+N + L +FQ +++SA I ++
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367
A N + + A D L+AA +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 427
+ L L G KA + ++ A + G
Sbjct: 125 VSALQYNPDLYCVRSDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 428 NEMASILREGDPVQIEPPIAWA----GFAAVQKTHHEVAAAFETEENELSKMEECAGAGE 483
+I V ++P A G + + A A LS
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 484 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYC 542
+ + +++A + A++ P + NLANA G + C L +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.2 bits (173), Expect = 7e-14
Identities = 62/406 (15%), Positives = 125/406 (30%), Gaps = 68/406 (16%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI-----------LLRCEADIARPEL 193
R+ P N LL ++ + + ++ A + + E
Sbjct: 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 194 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL 253
+ + N + ++E + ++Q + V + LG +L
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 254 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313
GRL+ + + + PN NLG + G++ + F+ + D N A
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 314 INYAALLLC--KYGSVLA-----------GAGANTGEGACLDQASAVNVAKECLLAALKA 360
IN +L + +A A + + +++A + A++
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPT 420
P + NLANA G + C A +L P + +A + + +E
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAV 325
Query: 421 EQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAG 480
A +++ P A A H +A+ + + K++E
Sbjct: 326 RLYRKA-------------LEVFPEFAAA--------HSNLASVLQ----QQGKLQE--- 357
Query: 481 AGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526
A A++ P A ++N+ N D
Sbjct: 358 ---------------ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 3e-09
Identities = 35/257 (13%), Positives = 71/257 (27%), Gaps = 33/257 (12%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
L +Q+GD E + + L ++ ++ L+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLL---------------------SSI 42
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
Q ++ + A+K +P A ++NL N Y G + + + A +L+P+ +
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 401 TRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP-IAWAGFAAVQKTHH 459
+A + + + +S D + A
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 460 EVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLAN 519
E F + L + G A A+ DP + NL N
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAI-----------HHFEKAVTLDPNFLDAYINLGN 211
Query: 520 AYYLTGDHRSSGKCLEK 536
+ +
Sbjct: 212 VLKEARIFDRAVAAYLR 228
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.6 bits (149), Expect = 4e-11
Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 20/162 (12%)
Query: 252 LLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311
L G+LQ ++ +L + P + + GD E++ + I +
Sbjct: 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
L+ GA T + + +
Sbjct: 66 GASQLRHLVKAAQARKDFAQGAATA--------------------KVLGENEELTKSLVS 105
Query: 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDA 413
N ++ D+ + + +L + S ++D
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDI 147
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.002
Identities = 10/147 (6%), Positives = 32/147 (21%), Gaps = 22/147 (14%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204
+ PK+A + G +A ++ ++ P L + A
Sbjct: 24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRHLVKAAQ 78
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
+ + + + + + S + +
Sbjct: 79 -----------------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121
Query: 265 LSSLLAVDPNNCDCIGNLGIAYFQSGD 291
+ + + + + D
Sbjct: 122 ALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 4e-11
Identities = 28/256 (10%), Positives = 59/256 (23%), Gaps = 48/256 (18%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
+ ++ Y+K ++ E + + L
Sbjct: 17 ADMTDSKLGPAEVWTSRQALQDL---YQKM--LVTDLEYALDKKVEQDLWNHAF------ 65
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ L ++ + R V N + SG + L +
Sbjct: 66 --------------KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT 111
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSV 327
+ VD LGI + K H L++
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVH------------ 157
Query: 328 LAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKC 387
G + + A+ A + P + LA GDH ++
Sbjct: 158 ---------LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208
Query: 388 LEKAAKLEPNCMSTRY 403
++ ++ +
Sbjct: 209 YCRSIAVKFPFPAAST 224
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 8e-08
Identities = 28/170 (16%), Positives = 41/170 (24%), Gaps = 3/170 (1%)
Query: 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPE-LLSLVQIHHAQCLLPESS 210
HA Q + + E + L EA LL + L
Sbjct: 63 HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVK 122
Query: 211 GDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLA 270
+ I+ S + LG I + + S
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQ 180
Query: 271 VDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320
+ P+N L I GD + + I PAA N L
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 1e-06
Identities = 12/151 (7%), Positives = 31/151 (20%), Gaps = 17/151 (11%)
Query: 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320
S L + + D + ++ +Q +++ D + L
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLEYALDKKVEQDLW 61
Query: 321 LCKYGSVLA-------------GAGANTGEGACLDQA-SAVNVAKECLLAALKADPKAAH 366
+ + + + L+ A + L D
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
+ L + K +
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ 152
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 20/176 (11%), Positives = 42/176 (23%), Gaps = 29/176 (16%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
LG++ + V + CL+
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSS-------------------CSYICQHCLV- 156
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
+ D + + S + + Q +N L ++ G ++I
Sbjct: 157 -----HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211
Query: 268 LLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323
+AV NL A ++ + K + A I + +
Sbjct: 212 SIAVKFPFPAASTNLQKALSKALESRDEVKT----KWGVSDFIKAFIKFHGHVYLS 263
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 0.001
Identities = 18/214 (8%), Positives = 55/214 (25%), Gaps = 26/214 (12%)
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN----------CM 399
+ + L A A + + +K +
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDLW 61
Query: 400 STRYAVAVSRIKDAERSQEPTEQLSWAGN-------------EMASILREGDPVQIEPPI 446
+ + ++ ++ +++ + N ++ L V + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 447 AWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKA 506
+ + +A + + + S + + + + A+ A +
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 507 DPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMV 540
P + LA GDH ++ + + V
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 24/265 (9%), Positives = 50/265 (18%), Gaps = 21/265 (7%)
Query: 142 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 201
+ P A + Q L S + L E+ + H
Sbjct: 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113
Query: 202 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQA-VVWNTLGLILLKSGRLQS 260
L L L +++D R + +
Sbjct: 114 CWLL-----------SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162
Query: 261 SISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY---- 316
++ SL+ + +N Q S + + N
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 317 -----AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371
A + + + L + L
Sbjct: 223 PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282
Query: 372 ANAYYLTGDHRSSGKCLEKAAKLEP 396
A + + + ++P
Sbjct: 283 MRALDPLLYEKETLQYFSTLKAVDP 307
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 21/180 (11%), Positives = 38/180 (21%), Gaps = 27/180 (15%)
Query: 142 HVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHH 201
+ + N + + +L + E + + L LVQ
Sbjct: 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---------LLKELELVQNAF 219
Query: 202 AQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSS 261
+S+ E S
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAE------------------PLFRCELSVEKSTVLQSELES 261
Query: 262 ISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321
L L + I L A +++ + F L D A L + + L
Sbjct: 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 11/295 (3%)
Query: 248 LGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307
GL L+ G L +++ + + + DP + + LG ++ + + +
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 308 NHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHI 367
++ AL+ A + A A V A A
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT------PAEEGAGGAGLGP 138
Query: 368 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY----AVAVSRIKDAERSQEPTEQL 423
+ + + A +L+P + V + + +++ +
Sbjct: 139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 198
Query: 424 SWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGE 483
+ + + AA ++ E+ + L GA
Sbjct: 199 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR-ALELQPGYIRSRYNLGISCINLGAHR 257
Query: 484 SAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
A A+N+ ++ + + +IW+ L A + G + G + L
Sbjct: 258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 36/265 (13%), Positives = 62/265 (23%), Gaps = 28/265 (10%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
G+ Q GD+ + F+ + +D H A G
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL---------------------GTT 62
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
+ +A L L+ P LA ++ R + + L + P
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 401 TRYAVAVSR-------IKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453
K S + +R G
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182
Query: 454 VQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHI 513
++ A T + + A L + A AL+ P
Sbjct: 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242
Query: 514 WANLANAYYLTGDHRSSGKCLEKVL 538
NL + G HR + + + L
Sbjct: 243 RYNLGISCINLGAHREAVEHFLEAL 267
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 41/262 (15%), Positives = 70/262 (26%), Gaps = 31/262 (11%)
Query: 148 PKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP 207
PK+ A LG Q L A+S+ + E+ + + + + Q
Sbjct: 50 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC-- 107
Query: 208 ESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSS 267
L L L E LG LL + +
Sbjct: 108 -----EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLA 161
Query: 268 LLAV--DPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYG 325
+ + + D LG+ + SG+ +++ CF + N
Sbjct: 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL--------- 212
Query: 326 SVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSG 385
GA L + A AL+ P NL + G HR +
Sbjct: 213 ------------GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260
Query: 386 KCLEKAAKLEPNCMSTRYAVAV 407
+ +A ++ R
Sbjct: 261 EHFLEALNMQRKSRGPRGEGGA 282
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.001
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 468 EENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDH 527
EEN L + G Q + A AA++ DPK W L
Sbjct: 12 EENPLRDHPQPFEEGLRRL--QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 69
Query: 528 RSSGKCLEKVLMVYC 542
+ L + L +
Sbjct: 70 LLAISALRRCLELKP 84
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 39/272 (14%), Positives = 70/272 (25%), Gaps = 43/272 (15%)
Query: 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPEL 193
+R E+ L A + A + G++Y LG A + + +A D+
Sbjct: 20 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL----AIRPDMPEVFN 75
Query: 194 LSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILL 253
+ + A + ++ D G+ L
Sbjct: 76 YLGIYLTQAGNF-------------------DAAYEAFDSVLELDPTYNYAHLNRGIALY 116
Query: 254 KSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313
GR + + L + DPN+ L +A + + + Q D+
Sbjct: 117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 176
Query: 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373
I L + + K + L
Sbjct: 177 IVEFYLGNISEQT-------------------LMERLKADATDNTSLAEHLSETNFYLGK 217
Query: 374 AYYLTGDHRSSGKCLEKAAKLEP-NCMSTRYA 404
Y GD S+ + A N + RYA
Sbjct: 218 YYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.001
Identities = 22/224 (9%), Positives = 50/224 (22%), Gaps = 26/224 (11%)
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
L Q + ++ L + D + A + Y G + +A + P+
Sbjct: 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 72
Query: 401 TRYAVAVSRI-----KDAERSQEPTEQLSWAGNEMASILREGDPVQIEP----------- 444
+ + A + + +L N
Sbjct: 73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 132
Query: 445 --------PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQA--SAVN 494
W A + + + + K + E + + + +
Sbjct: 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192
Query: 495 VAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVL 538
K + L Y GD S+ + +
Sbjct: 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (115), Expect = 7e-07
Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 24/323 (7%)
Query: 233 ESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-----CDCIGNLGIAYF 287
+ ++ DT A + + G + + L P LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 288 QSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAV 347
G++ +S Q + H +YA L + +L G ++A
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDV--WHYALWSLIQQSEILFAQGFLQTAWETQEKA--- 117
Query: 348 NVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407
+ L+ P + A + + ++ + + +
Sbjct: 118 --FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175
Query: 408 SRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFET 467
+ + ++ + N + ++L G A + + AAA
Sbjct: 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235
Query: 468 EENELSKMEECAGAGESAFLDQASA------VNVAKECLLAAL------KADPKAAHIWA 515
+ + + + A A A+ L +
Sbjct: 236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295
Query: 516 NLANAYYLTGDHRSSGKCLEKVL 538
L Y+ G + + L L
Sbjct: 296 LLNQLYWQAGRKSDAQRVLLDAL 318
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (86), Expect = 0.002
Identities = 32/262 (12%), Positives = 68/262 (25%), Gaps = 29/262 (11%)
Query: 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQC 204
R+ +A + L + G P +A + A E L L ++ H +
Sbjct: 6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65
Query: 205 LLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISV 264
L S L + ++ IL G LQ++
Sbjct: 66 ELTRS------------LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113
Query: 265 LSSLLAVDPNNCD--------CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINY 316
+ + + ++++ + I ++
Sbjct: 114 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173
Query: 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYY 376
+L + + G + S +N + L ++ +
Sbjct: 174 CLAMLIQC---------SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 377 LTGDHRSSGKCLEKAAKLEPNC 398
+TGD ++ L AK E
Sbjct: 225 MTGDKAAAANWLRHTAKPEFAN 246
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 3e-06
Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 300
+A+ G++ + ++ + AV + N+G Y +M ++ K F
Sbjct: 4 EAISLWNEGVLAADKKDWKGALD---AFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 301 DLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKA 360
I +D++ A L LA L Q N + + L+
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE----ALIQLRG-NQLIDYKILGLQF 115
Query: 361 DPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 414
A + N+A Y + + + + L A ++ ++ A+ + +
Sbjct: 116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK 169
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 8e-06
Identities = 17/180 (9%), Positives = 47/180 (26%), Gaps = 20/180 (11%)
Query: 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLI 303
V++ +L + R + + + + ++ N + + I
Sbjct: 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 104
Query: 304 LKDQNHPAALINYAALLLCK--------------YGSVLAGAGANTGEGACLDQASAVNV 349
+++Q + ++ +L+ A + + +
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 164
Query: 350 AKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLE------KAAKLEPNCMSTRY 403
+ + LK D + +W T + + KL P+ S
Sbjct: 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 224
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (96), Expect = 5e-05
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 219 LEPEELEEILSKL-KESMQSDTRQAVVWNTLGLILLKSGR---LQSSISVLSSLLAVDPN 274
L P++LE + ++ E + T Q+ L+KS + + +L+ + +
Sbjct: 13 LYPQQLEILRQQVVSEGGPTATIQS--RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES 70
Query: 275 N-CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAAL 313
+C+ L I ++ G+ + + L ++N+
Sbjct: 71 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 20/197 (10%), Positives = 42/197 (21%), Gaps = 16/197 (8%)
Query: 363 KAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR-YAVAVSRIKDAERSQEPTE 421
+AA + A Y L + +G KAA + + +S +
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 422 QLSWAGNEMASILREGDPVQIEPPI-------AWAGFAAVQKTHHEVAAAFETEENELSK 474
+ I + K A E + S
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154
Query: 475 MEECAGAGESA-FLDQASAVNVAKECLLAALKADPK-------AAHIWANLANAYYLTGD 526
+ A A + +K+ + D
Sbjct: 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214
Query: 527 HRSSGKCLEKVLMVYCS 543
++ + L++ +
Sbjct: 215 AVAAARTLQEGQSEDPN 231
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.001
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
LG ++ D + + K + D + + N AA+ K G
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--------------GDY 54
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPN 397
A E + + A +A + N+Y+ ++ + K+
Sbjct: 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 37.2 bits (85), Expect = 0.002
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 8/151 (5%)
Query: 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206
+ A G +Y + G+ ++AV Y K L + + L
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFL 68
Query: 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLS 266
N L+ E + + +++ D+ G L +S+
Sbjct: 69 ------NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122
Query: 267 SLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297
+L V+P N + + ++ + + +
Sbjct: 123 KVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 36.1 bits (82), Expect = 0.004
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 6/138 (4%)
Query: 281 NLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGAC 340
G YF+ G Q+ + ++ + + A C
Sbjct: 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL------LAAFLNLAMC 73
Query: 341 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMS 400
+ A EC AL D A L + S+ EK ++ P +
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 401 TRYAVAVSRIKDAERSQE 418
R + + + K E ++
Sbjct: 134 ARLQIFMCQKKAKEHNER 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.88 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.56 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.51 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.2 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.98 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.26 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.39 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.91 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-35 Score=283.49 Aligned_cols=361 Identities=18% Similarity=0.194 Sum_probs=293.1
Q ss_pred hhhHHhhccchhhhhhHHHHHhHhcCCCCcccccccCCC-----CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 009045 93 EGKKINKLGKCRSRISSKMDSALEFGVDADGDQSGLGTS-----SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQP 167 (546)
Q Consensus 93 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~~~~g~~-----~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 167 (546)
.+...++.|++..++ ..+.++++..|++..++..+|.+ +..+|...|+++++.+|+++.+++.+|.+|...|++
T Consensus 5 la~~~~~~G~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAE-RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 467788999999998 99999999999999888888776 668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccc----------cccC-CC-----ccccccChhhHHHHHHHH
Q 009045 168 LKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLP----------ESSG-DN-----SLDKELEPEELEEILSKL 231 (546)
Q Consensus 168 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g-~~-----~~~~~~~~~~~~~A~~~~ 231 (546)
++|+..+.++++..|...... .............. .... .. ........+....+...+
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH-----HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 999999999999876542211 00000000000000 0000 00 000123445567777888
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 232 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 232 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
.+.+...|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++....|....
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 238 (388)
T d1w3ba_ 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009045 312 ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKA 391 (546)
Q Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 391 (546)
.+..+|.++. ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++
T Consensus 239 ~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 297 (388)
T d1w3ba_ 239 VHGNLACVYY---------------------EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8888877776 7788888888888888888888888888888888888888888888888
Q ss_pred HhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhh
Q 009045 392 AKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENE 471 (546)
Q Consensus 392 l~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 471 (546)
+...|.+. ..+..++.++...|++++|+..+.+.
T Consensus 298 ~~~~~~~~----------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 298 LRLCPTHA----------------------------------------------DSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHCTTCH----------------------------------------------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hccCCccc----------------------------------------------hhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 88877654 45667788889999999999999996
Q ss_pred cc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 009045 472 LS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGD 526 (546)
Q Consensus 472 l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (546)
+. |....+++.+|.++...|++++|+.+|+++++++|+++.+|.+||.+|..+||
T Consensus 332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 65 66668899999999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-33 Score=266.52 Aligned_cols=359 Identities=16% Similarity=0.145 Sum_probs=262.6
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccc
Q 009045 127 GLGTSSSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL 206 (546)
Q Consensus 127 ~~g~~~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 206 (546)
..|.. .+|++.|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|+. ..++..+|.+
T Consensus 11 ~~G~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------~~a~~~l~~~ 76 (388)
T d1w3ba_ 11 QAGDF--EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------------AEAYSNLGNV 76 (388)
T ss_dssp HHTCH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHH
Confidence 34555 889999999999999999999999999999999999999999999997654 2445566666
Q ss_pred ccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH
Q 009045 207 PESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 286 (546)
Q Consensus 207 ~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 286 (546)
+. ..|++++|+..+.+++..+|.........+......+.+..+...........+.........+...
T Consensus 77 ~~-----------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (388)
T d1w3ba_ 77 YK-----------ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HH-----------HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred hh-----------hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 4555699999999999999988877777777777666666666666655555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH 366 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 366 (546)
...+....+...+.+.+...|++...+..+|..+. ..|++++|+..++++++.+|++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~ 204 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN---------------------AQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------TTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccchhhhhHHHHHHhhccCcchhHHHHhhccccc---------------------ccCcHHHHHHHHHHHHHhCcccHH
Confidence 56666666666666666666666555555555554 555566666666666666666666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHH
Q 009045 367 IWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPI 446 (546)
Q Consensus 367 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (546)
++..+|.++...|++++|+..|+++....|.....+..++...... ..+..+...+...+. ..|+.+.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~----~~p~~~~ 272 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ--------GLIDLAIDTYRRAIE----LQPHFPD 272 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHH----TCSSCHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHH----hCCCCHH
Confidence 6666666666666666666666666666665555555554433321 111122222222222 2345567
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
+|..+|.++...|++.+|+..+...+. +.....+..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 352 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 888899999999999999999998555 556677889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcc
Q 009045 525 GDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 525 g~~~~A~~~~~~al~~~~~ 543 (546)
|++++|+.+|++++++.|.
T Consensus 353 g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 353 GKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-27 Score=224.61 Aligned_cols=251 Identities=18% Similarity=0.196 Sum_probs=180.7
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.+|...|++++|+.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 108 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 108 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--AAHIWANLANAY 375 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 375 (546)
.+++++...|............... ............+...+.+.+|+..|.++++++|+ ++.++..+|.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 109 ILRDWLRYTPAYAHLVTPAEEGAGG------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHTSTTTGGGCC---------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred chhhHHHhccchHHHHHhhhhhhhh------cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999998865432221111100 00111112233445677899999999999999987 578899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 009045 376 YLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQ 455 (546)
Q Consensus 376 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (546)
...|++++|+..|++++..+|++.. +|..+|.++
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~----------------------------------------------~~~~lg~~~ 216 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYL----------------------------------------------LWNKLGATL 216 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH----------------------------------------------HHHHHHHHH
T ss_pred HHHHHHhhhhccccccccccccccc----------------------------------------------chhhhhhcc
Confidence 9999999999999999999998653 344555555
Q ss_pred HhcccHHHHHHHHHhhcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009045 456 KTHHEVAAAFETEENELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANA 520 (546)
Q Consensus 456 ~~~~~~~~A~~~~~~~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 520 (546)
...|++++|+..+.+.+. +....+++.+|.+|...|++++|+..|+++++++|++..++..++.+
T Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred cccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence 555555555555555332 33444555555555555555555555555555555555444444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-27 Score=219.52 Aligned_cols=278 Identities=14% Similarity=0.164 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+....+.+|..+...|++++|+..|+++++.+|++ ..+|..+|.++.. .|++++|+.
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------------~~a~~~lg~~~~~-----------~~~~~~A~~ 74 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------------MEAWQYLGTTQAE-----------NEQELLAIS 74 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHHH-----------TTCHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHH-----------cCChHHHHH
Confidence 34456789999999999999999999999997764 3456667776644 455699999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHH---------------HHHHHHHHcCCHHH
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIG---------------NLGIAYFQSGDMEQ 294 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------------~la~~~~~~g~~~~ 294 (546)
.|.++++++|++...+..+|.++...|++++|+..+++++...|.....+. .....+...+.+.+
T Consensus 75 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999887644321 12223445677899
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009045 295 SAKCFQDLILKDQNH--PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLA 372 (546)
Q Consensus 295 A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 372 (546)
|+..|.+++.++|+. ..++..+|.++. ..|++++|+..|++++..+|+++.+|..+|
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 213 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFN---------------------LSGEYDKAVDCFTAALSVRPNDYLLWNKLG 213 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHH---------------------HHHHHhhhhcccccccccccccccchhhhh
Confidence 999999999999875 455667777766 899999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 009045 373 NAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFA 452 (546)
Q Consensus 373 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 452 (546)
.+|..+|++++|+.+|+++++++|+++ .+|..+|
T Consensus 214 ~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------------------------------~a~~~lg 247 (323)
T d1fcha_ 214 ATLANGNQSEEAVAAYRRALELQPGYI----------------------------------------------RSRYNLG 247 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------------------HHHHHHH
T ss_pred hcccccccchhHHHHHHHHHHHhhccH----------------------------------------------HHHHHHH
Confidence 999999999999999999999999864 4577788
Q ss_pred HHHHhcccHHHHHHHHHhhccchhh--hHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHH
Q 009045 453 AVQKTHHEVAAAFETEENELSKMEE--CAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 530 (546)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 530 (546)
.++...|++++|+..|.+++.-.+. ..+. ........+|..++.++...|+.+.+
T Consensus 248 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-----------------------~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRG-----------------------EGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC-----------------------------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcChhhhh-----------------------hhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999998886552221 1111 12233445667777777777777776
Q ss_pred HHHHHHHHHH
Q 009045 531 GKCLEKVLMV 540 (546)
Q Consensus 531 ~~~~~~al~~ 540 (546)
.....+.++.
T Consensus 305 ~~~~~~~l~~ 314 (323)
T d1fcha_ 305 GAADARDLST 314 (323)
T ss_dssp HHHHTTCHHH
T ss_pred HHHHHhCHHH
Confidence 6665555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.2e-24 Score=195.56 Aligned_cols=220 Identities=13% Similarity=0.122 Sum_probs=193.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhH
Q 009045 145 RKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEEL 224 (546)
Q Consensus 145 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 224 (546)
..+|+..+++..+|.++.+.+++++|+..++++++++|++ ..+|..+|.++..+|. ++
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~------------~~a~~~r~~~l~~l~~----------~~ 94 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------YTVWHFRRVLLKSLQK----------DL 94 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTC----------CH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHhCc----------CH
Confidence 3467789999999999999999999999999999997765 3566777776655543 36
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
++|+..++++++.+|++..+|..+|.++..+|++++|+..|.++++++|++..+|.++|.++..+|++++|+.+|+++++
T Consensus 95 ~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 009045 305 KDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 305 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 384 (546)
++|.+..+|.+++.++..... +...+.+++|+..+.++++++|++..+|..++.++... ...++
T Consensus 175 ~~p~n~~a~~~r~~~l~~~~~---------------~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~ 238 (315)
T d2h6fa1 175 EDVRNNSVWNQRYFVISNTTG---------------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKY 238 (315)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC---------------SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGC
T ss_pred HCCccHHHHHHHHHHHHHccc---------------cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHH
Confidence 999999999999998763211 11345589999999999999999999999999987654 46889
Q ss_pred HHHHHHHHhcCCCChhHH
Q 009045 385 GKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~ 402 (546)
...+++++++.|+....+
T Consensus 239 ~~~~~~~~~l~~~~~~~~ 256 (315)
T d2h6fa1 239 PNLLNQLLDLQPSHSSPY 256 (315)
T ss_dssp HHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHhCCCcCCHH
Confidence 999999999998765544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.5e-24 Score=195.80 Aligned_cols=246 Identities=11% Similarity=0.047 Sum_probs=207.1
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD-MEQSAKCFQDLILKDQNHPAAL 313 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 313 (546)
+..+|+...++..+|.++.+.+.+++|+..++++|+++|++..+|..+|.++..+|. +++|+..++++++.+|++..+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~ 115 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence 456789999999999999999999999999999999999999999999999999875 9999999999999999999999
Q ss_pred HHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 009045 314 INYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAK 393 (546)
Q Consensus 314 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 393 (546)
..+|.++. ..|++++|+..++++++++|++..+|..+|.++...|++++|+.+|+++++
T Consensus 116 ~~~~~~~~---------------------~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 116 HHRRVLVE---------------------WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHHHHHH---------------------HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHhHHHH---------------------hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhc-
Q 009045 394 LEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENEL- 472 (546)
Q Consensus 394 ~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l- 472 (546)
++|.+..+|..++...... . .+...+.+++|+..+.+++
T Consensus 175 ~~p~n~~a~~~r~~~l~~~-~---------------------------------------~~~~~~~~~~ai~~~~~al~ 214 (315)
T d2h6fa1 175 EDVRNNSVWNQRYFVISNT-T---------------------------------------GYNDRAVLEREVQYTLEMIK 214 (315)
T ss_dssp HCTTCHHHHHHHHHHHHHT-T---------------------------------------CSCSHHHHHHHHHHHHHHHH
T ss_pred HCCccHHHHHHHHHHHHHc-c---------------------------------------ccchhhhhHHhHHHHHHHHH
Confidence 9999988777665421110 0 0112345677787777754
Q ss_pred -cchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh--cCChHHHHHHHHHHHHHhc
Q 009045 473 -SKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA--AHIWANLANAYYL--TGDHRSSGKCLEKVLMVYC 542 (546)
Q Consensus 473 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~ 542 (546)
.|.+..+|+.++.++...| .+++...+++++++.|+. +.++..++.+|.. .++.+.+...++++++++.
T Consensus 215 ~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~ 288 (315)
T d2h6fa1 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 288 (315)
T ss_dssp HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4666778888887765544 578889999998888764 5666778887744 4777788888888887753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=2.2e-23 Score=195.96 Aligned_cols=281 Identities=10% Similarity=-0.021 Sum_probs=224.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhcccc---ccccCCCccccccChhhHHHHHHHHHH
Q 009045 157 LGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLL---PESSGDNSLDKELEPEELEEILSKLKE 233 (546)
Q Consensus 157 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~A~~~~~~ 233 (546)
+.......+..++|+.+++++++++|+.. .+|...+.+ +...+.. +...|++++|+.++++
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~------------~a~~~r~~~l~~l~~~~~~----~~~~~~~~~al~~~~~ 98 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFA------------TLWNCRREVLQHLETEKSP----EESAALVKAELGFLES 98 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcH------------HHHHHHHHHHHHHhhhcch----HHHHHHHHHHHHHHHH
Confidence 33334444455899999999999977641 112222211 1222322 4567888999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCC--hHHHHHHHHhhHhcCCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 234 SMQSDTRQAVVWNTLGLILLKSGR--LQSSISVLSSLLAVDPNNCDCI-GNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 234 al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
+++.+|++..+|+.+|.++...++ +++|+..+++++..+|.+..++ ..+|.++...|.+++|+..+++++.++|.+.
T Consensus 99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~ 178 (334)
T d1dcea1 99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999888765 7899999999999999988886 4677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009045 311 AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEK 390 (546)
Q Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 390 (546)
.+|..+|.++. ..|++++|+..+++++...|.....+ ..+...+..+++...|.+
T Consensus 179 ~a~~~l~~~~~---------------------~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 179 SSWHYRSCLLP---------------------QLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp HHHHHHHHHHH---------------------HHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSSCSHHHHHHH
T ss_pred HHHHHHHHHHH---------------------HhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcchhHHHHHHHH
Confidence 99999999888 78888888888888888777654443 344566778888999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHh
Q 009045 391 AAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEEN 470 (546)
Q Consensus 391 al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 470 (546)
++...|.+.. .+..++..+...+++.+|+..+.+
T Consensus 234 ~l~~~~~~~~----------------------------------------------~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 234 WLLGRAEPLF----------------------------------------------RCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp HHHSCCCCSS----------------------------------------------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcchhh----------------------------------------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9888887643 344556667778899999999998
Q ss_pred hcc--chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 009045 471 ELS--KMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLT 524 (546)
Q Consensus 471 ~l~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 524 (546)
.+. +....+++.+|.++...|++++|+.+|+++++++|.+...|..|+..+...
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 666 445577889999999999999999999999999999999999999888753
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=7.8e-22 Score=178.17 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=181.2
Q ss_pred ccChhhHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHH
Q 009045 218 ELEPEELEEILSKLKESMQS----DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 293 (546)
+....+.+.|+..+++++.. ++..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.+|..+|+++
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHH
Confidence 34567789999999999875 44567799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 009045 294 QSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLAN 373 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 373 (546)
+|+..|+++++++|++..++..+|.++. ..|++++|+..|+++++.+|.+......++.
T Consensus 89 ~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 147 (259)
T d1xnfa_ 89 AAYEAFDSVLELDPTYNYAHLNRGIALY---------------------YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 147 (259)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhhhhhHHHHHHhhhhhhHHHHHHHHH---------------------HHhhHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999999999999999999887 8999999999999999999999999999998
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 009045 374 AYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAA 453 (546)
Q Consensus 374 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (546)
++...+..+.+...........+..... .+....+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------------------------------- 184 (259)
T d1xnfa_ 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGN----------------------------------------- 184 (259)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTS-----------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHH-----------------------------------------
Confidence 8888887777666666666555544321 111000000
Q ss_pred HHHhcccHHHHHHHHHh--hccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 009045 454 VQKTHHEVAAAFETEEN--ELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAA 511 (546)
Q Consensus 454 ~~~~~~~~~~A~~~~~~--~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 511 (546)
....+....+...+.. .+.+....+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 185 -ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp -SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred -HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 0001112222222222 22344456788999999999999999999999999999874
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=3.9e-23 Score=194.22 Aligned_cols=248 Identities=8% Similarity=-0.082 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----------ChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC--H
Q 009045 225 EEILSKLKESMQSDTRQAVVWNTLGLILLKSG----------RLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD--M 292 (546)
Q Consensus 225 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 292 (546)
++|+.+++++++.+|++..+|..++.++...+ ++++|+.+++++++.+|++..+|..+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 89999999999999999999988887766544 47899999999999999999999999999988775 8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALI-NYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
++|+..+.+++..+|.+..++. ..+.++. ..+.+++|+..++++++.+|.+..+|..+
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~Al~~~~~~i~~~p~~~~a~~~l 184 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQ---------------------AAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------TCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHH---------------------hccccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999998865 4455555 78999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGF 451 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (546)
|.++..+|++++|+..+++++.+.|........
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 217 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQN----------------------------------------------- 217 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH-----------------------------------------------
Confidence 999999999999988888877776653322111
Q ss_pred HHHHHhcccHHHHHHHHHhh--ccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHH
Q 009045 452 AAVQKTHHEVAAAFETEENE--LSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 529 (546)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~~--l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (546)
+...+...++...+.+. ..+.....+..+|.++...+++.+|+..+.++++.+|++..++..+|.+|...|++++
T Consensus 218 ---~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~e 294 (334)
T d1dcea1 218 ---AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 294 (334)
T ss_dssp ---HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH
T ss_pred ---HHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHH
Confidence 11222333444445543 3455566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 009045 530 SGKCLEKVLMVYCS 543 (546)
Q Consensus 530 A~~~~~~al~~~~~ 543 (546)
|+.+|++++++-|.
T Consensus 295 A~~~~~~ai~ldP~ 308 (334)
T d1dcea1 295 TLQYFSTLKAVDPM 308 (334)
T ss_dssp HHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHCcc
Confidence 99999999998763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.3e-21 Score=172.12 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=168.9
Q ss_pred CChHHHHHHHHhhHhcC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccc
Q 009045 256 GRLQSSISVLSSLLAVD----PNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGA 331 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 331 (546)
.+.+.|+..+++++... +..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~---------- 82 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT---------- 82 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH----------
Confidence 35567777788887653 3456799999999999999999999999999999999999999999888
Q ss_pred ccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009045 332 GANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 411 (546)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~ 411 (546)
..|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++.+|++......++.....
T Consensus 83 -----------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 151 (259)
T d1xnfa_ 83 -----------QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 151 (259)
T ss_dssp -----------HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987655444332211
Q ss_pred HhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHH----H
Q 009045 412 DAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF----L 487 (546)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~----~ 487 (546)
. ...+...++............ ...+... .
T Consensus 152 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 185 (259)
T d1xnfa_ 152 L--------------------------------------------DEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGNI 185 (259)
T ss_dssp H--------------------------------------------CHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTSS
T ss_pred h--------------------------------------------hhHHHHHHHHHHhhccchhhh--hhhHHHHHHHHH
Confidence 1 001111111111111111110 0001111 1
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 009045 488 DQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 488 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
...+.++.+...+...+...|....+|+.+|.+|...|++++|+.+|++++..-|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 23445677777778888888888999999999999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.2e-20 Score=172.96 Aligned_cols=291 Identities=11% Similarity=-0.002 Sum_probs=214.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 009045 238 DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-----DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAA 312 (546)
Q Consensus 238 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 312 (546)
++..+++...+|.+++..|++++|+..|++++...|++. .++..+|.++...|++++|+..|++++.+.+.....
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence 344567788899999999999999999999999999763 578899999999999999999999999876544322
Q ss_pred HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChHHH
Q 009045 313 LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK--------AAHIWANLANAYYLTGDHRSS 384 (546)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A 384 (546)
.......+ .++.++...|++..++..+.+++.+.+. ....+..+|.++...|+++.|
T Consensus 88 ~~~~~~~~---------------~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 88 HYALWSLI---------------QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HHHHHHHH---------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence 22111111 1345555999999999999999875321 345778899999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHH
Q 009045 385 GKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAA 464 (546)
Q Consensus 385 ~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 464 (546)
...+.+++...+.........+...................................+....++..++.++...|++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 153 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 99999999987765433322222222111111111111222222233333444433344456788899999999999999
Q ss_pred HHHHHhhccc------hhhhHHhhHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 009045 465 FETEENELSK------MEECAGAGESAFLDQASAVNVAKECLLAALKA------DPKAAHIWANLANAYYLTGDHRSSGK 532 (546)
Q Consensus 465 ~~~~~~~l~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (546)
...+.+.+.. .....+..+|.++...|++++|+..+++++.. .|....++..+|.+|...|++++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999986652 22245668999999999999999999999853 35567899999999999999999999
Q ss_pred HHHHHHHHhcc
Q 009045 533 CLEKVLMVYCS 543 (546)
Q Consensus 533 ~~~~al~~~~~ 543 (546)
+|++++++...
T Consensus 313 ~l~~Al~l~~~ 323 (366)
T d1hz4a_ 313 VLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.2e-19 Score=165.95 Aligned_cols=311 Identities=14% Similarity=-0.024 Sum_probs=236.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHH
Q 009045 147 MPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEE 226 (546)
Q Consensus 147 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 226 (546)
++.+++....+|.++...|++++|+.+|+++++..|.+.. ...+.++..+|.++. ..|++++
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~-------~~~~~a~~~lg~~~~-----------~~g~~~~ 69 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF-------YSRIVATSVLGEVLH-----------CKGELTR 69 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH-------HHHHHHHHHHHHHHH-----------HHTCHHH
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc-------HHHHHHHHHHHHHHH-----------HCCCHHH
Confidence 3445778888999999999999999999999998775421 122345556666654 4556699
Q ss_pred HHHHHHHHHhcCccc------HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC--------CChHHHHHHHHHHHHcCCH
Q 009045 227 ILSKLKESMQSDTRQ------AVVWNTLGLILLKSGRLQSSISVLSSLLAVDP--------NNCDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 227 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~ 292 (546)
|+..|+++++..+.. ..++..++.++...|++..|...+.+++.+.+ .....+..+|.++...|++
T Consensus 70 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 70 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 999999999865432 45778899999999999999999999987532 1235677899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC-------CH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK-------AA 365 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 365 (546)
+.|...+.+++...+.........+... .+..+...+++.++...+.++...... ..
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAM----------------LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHH----------------HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHH----------------HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 9999999999987665432221111111 133444889999999999988876433 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcH
Q 009045 366 HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPP 445 (546)
Q Consensus 366 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (546)
.++..++.++...|++++|...+++++...+.+... ..
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------------~~ 251 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF------------------------------------------LQ 251 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG------------------------------------------GH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH------------------------------------------HH
Confidence 567888999999999999999999999888765422 12
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhcc--------chhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCC--------
Q 009045 446 IAWAGFAAVQKTHHEVAAAFETEENELS--------KMEECAGAGESAFLDQASAVNVAKECLLAALKADPK-------- 509 (546)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 509 (546)
..+..+|.++...|++++|+..+.+.+. +....++..+|.+|...|++++|+..+++++++.+.
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~ 331 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 331 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 3466788999999999999999987552 344467889999999999999999999999987542
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHH
Q 009045 510 -AAHIWANLANAYYLTGDHRSSGKC 533 (546)
Q Consensus 510 -~~~~~~~lg~~~~~~g~~~~A~~~ 533 (546)
....+..+...+...++.+++...
T Consensus 332 ~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 332 IEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp TTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHH
Confidence 234455566667777888888664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.8e-16 Score=122.29 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009045 245 WNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKY 324 (546)
Q Consensus 245 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 324 (546)
+...|..++..|+|++|+..|+++++.+|+++.+|..+|.+|..+|++++|+..|.++++++|+++.+++.+|.++.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~--- 82 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE--- 82 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH---
Confidence 45567777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred CccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 009045 325 GSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAY 375 (546)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 375 (546)
.+|++++|+..|+++++++|+++.++..++.+.
T Consensus 83 ------------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 ------------------FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp ------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 777777777777777777777777777776654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1e-15 Score=129.46 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
.++..|..+...|+|++|++.|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.++.++|.++.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-- 81 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-- 81 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH--
Confidence 3446789999999999999999864 45678899999999999999999999999999999999999999998887
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHcCChHHHHHH
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK----------------AAHIWANLANAYYLTGDHRSSGKC 387 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~ 387 (546)
++|++++|+..|++++...+. ...+++++|.++..+|++++|+..
T Consensus 82 -------------------~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~ 142 (192)
T d1hh8a_ 82 -------------------QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142 (192)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 899999999999999876543 247889999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHH
Q 009045 388 LEKAAKLEPNCMSTRYAVAVSR 409 (546)
Q Consensus 388 ~~~al~~~p~~~~~~~~l~~~~ 409 (546)
+++++.+.|+........++..
T Consensus 143 l~~A~~~~~~~~~~~~~~Al~~ 164 (192)
T d1hh8a_ 143 LALATSMKSEPRHSKIDKAMEC 164 (192)
T ss_dssp HHHHHTTCCSGGGGHHHHHHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHH
Confidence 9999999998766555555433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2e-16 Score=155.50 Aligned_cols=223 Identities=12% Similarity=0.037 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCc
Q 009045 135 REEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNS 214 (546)
Q Consensus 135 ~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (546)
+|++.|+++++++|+.+++++++|.++..+|++++| |++++..+|+.... +.....
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~------------~~~e~~--------- 59 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD------------KKVEQD--------- 59 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHH------------HTHHHH---------
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHH------------HhHHHH---------
Confidence 677888899999999888999999999988888876 88888875532110 100000
Q ss_pred cccccChhhHHHHHHHHHHHHhcCc--ccH-HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCC
Q 009045 215 LDKELEPEELEEILSKLKESMQSDT--RQA-VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGD 291 (546)
Q Consensus 215 ~~~~~~~~~~~~A~~~~~~al~~~p--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 291 (546)
+-...|..+++.+++..+... +.. .....++.+....+.|+.|+..+.+++.++|++...+.++|.++...|+
T Consensus 60 ----Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~ 135 (497)
T d1ya0a1 60 ----LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH 135 (497)
T ss_dssp ----HHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred ----HHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC
Confidence 001123667777777775432 222 2233456667778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
+++|+..+.+++..++. .++..+|.++. ..|++++|+.+|+++++++|++..+|++|
T Consensus 136 ~~~A~~~~~~al~~~~~--~~~~~LG~l~~---------------------~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 136 TSAIVKPQSSSCSYICQ--HCLVHLGDIAR---------------------YRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -------CCHHHHHHHH--HHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHHHHHHH---------------------HcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 99999999999887653 45666776666 88999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVS 408 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 408 (546)
|.++...|++.+|+.+|.+++...|..+.++.+++..
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999988888653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=4.8e-16 Score=141.76 Aligned_cols=216 Identities=10% Similarity=0.016 Sum_probs=158.0
Q ss_pred ChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCC------CChHHHHHHHHHHHHcCCHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDP------NNCDCIGNLGIAYFQSGDME 293 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~ 293 (546)
..++|++|.++|.++ |.+|...|+|++|+.+|.+++++.. ....++.++|.+|..+|+++
T Consensus 29 ~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~ 94 (290)
T d1qqea_ 29 DSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (290)
T ss_dssp SHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH
Confidence 456788888877664 8899999999999999999998732 23568999999999999999
Q ss_pred HHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC----
Q 009045 294 QSAKCFQDLILKDQNHP------AALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK---- 363 (546)
Q Consensus 294 ~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 363 (546)
+|+.+|++++.+.+... .++..++.++. ...|++++|+.+|++++++.+.
T Consensus 95 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~~~~~~~A~~~~~~A~~l~~~~~~~ 154 (290)
T d1qqea_ 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILE--------------------NDLHDYAKAIDCYELAGEWYAQDQSV 154 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh--------------------hHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999998865542 23344444332 2579999999999999987433
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCC
Q 009045 364 --AAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQ 441 (546)
Q Consensus 364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (546)
...++..+|.++..+|+|++|+..|++++...+.........
T Consensus 155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~------------------------------------ 198 (290)
T d1qqea_ 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL------------------------------------ 198 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH------------------------------------
T ss_pred hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH------------------------------------
Confidence 356789999999999999999999999999988765332211
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhh-------hHHhhHHHHHHH--hccHHHHHHHHHHHHHhCC
Q 009045 442 IEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEE-------CAGAGESAFLDQ--ASAVNVAKECLLAALKADP 508 (546)
Q Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 508 (546)
...+...+.++...+++..|...+.+...-.+. .....+..++.. .+.+++|+..|.++.+++|
T Consensus 199 ---~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 199 ---KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 134566677777778888888887775543221 122334334333 3457788888877766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=7.2e-15 Score=135.13 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=175.8
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHhhHhc-CCCChHHHHHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKS--------------GRLQSSISVLSSLLAV-DPNNCDCIGNLGIAY 286 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 286 (546)
.....+...|++|+...|.++.+|...+..+... +..++|...|++++.. .|.+...|..++..+
T Consensus 30 ~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3457788899999999999999999887765433 3458899999999975 788889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 287 FQSGDMEQSAKCFQDLILKDQNHPA-ALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
...|+++.|...|+++++..|.+.. .|..++.+.. +.|+++.|+..|+++++..|.+.
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~---------------------~~~~~~~ar~i~~~al~~~~~~~ 168 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---------------------RAEGIKSGRMIFKKAREDARTRH 168 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---------------------HHHCHHHHHHHHHHHHTSTTCCT
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------HcCChHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999997754 5777777666 78899999999999999999999
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCc
Q 009045 366 HIWANLANAYY-LTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEP 444 (546)
Q Consensus 366 ~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (546)
..+...+.... ..|+.+.|...|++++...|++...+
T Consensus 169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w------------------------------------------ 206 (308)
T d2onda1 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV------------------------------------------ 206 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHH------------------------------------------
Confidence 99999888754 46899999999999999988875443
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 009045 445 PIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFLDQASAVNVAKECLLAALKADPKA----AHIWANLANA 520 (546)
Q Consensus 445 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~ 520 (546)
..++. .+...|+++.|...|++++...|.+ ...|......
T Consensus 207 ----~~y~~--------------------------------~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f 250 (308)
T d2onda1 207 ----LAYID--------------------------------YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp ----HHHHH--------------------------------HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred ----HHHHH--------------------------------HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 33333 3445566677777777777765533 3356666666
Q ss_pred HHhcCChHHHHHHHHHHHHHhcc
Q 009045 521 YYLTGDHRSSGKCLEKVLMVYCS 543 (546)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~~~ 543 (546)
....|+.+.+...++++.+++++
T Consensus 251 E~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 251 ESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCcc
Confidence 66677777777777777777653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-15 Score=129.23 Aligned_cols=158 Identities=10% Similarity=0.106 Sum_probs=118.7
Q ss_pred cChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 219 LEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 219 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
+..|+|++|+..|.++ .|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..
T Consensus 16 ~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp HHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 4678889999999874 4567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHH-HHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009045 299 FQDLILKDQNHPAA-LINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL 377 (546)
Q Consensus 299 ~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 377 (546)
|++++...+.+... +..++..+ .......+.++|.++...|++++|++.+.+++.+.|+. .
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~~~------~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~------------~ 154 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGLQF------KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------R 154 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCC------EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG------------G
T ss_pred HHHHHHhCccCchHHHHHhhhhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------------c
Confidence 99999876544210 00000000 00001112234555559999999999999999999874 2
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 009045 378 TGDHRSSGKCLEKAAKLEPN 397 (546)
Q Consensus 378 ~g~~~~A~~~~~~al~~~p~ 397 (546)
.+..+.|+..+.+.....|.
T Consensus 155 ~~~~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 155 HSKIDKAMECVWKQKLYEPV 174 (192)
T ss_dssp GGHHHHHHHHHHTTCCCCCC
T ss_pred hHHHHHHHHHHHhhhhCCcc
Confidence 33446667666666555553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.3e-16 Score=126.54 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009045 243 VVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLC 322 (546)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 322 (546)
..+...|..+++.|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++..++..+|.++.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~- 89 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM- 89 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-
Confidence 3456678999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCChHHHHH
Q 009045 323 KYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL--TGDHRSSGK 386 (546)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~ 386 (546)
..|++++|+.+|++++.++|++..++..++.+... .+.+++|+.
T Consensus 90 --------------------~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 90 --------------------ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999988888776533 333445544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=5.2e-16 Score=141.48 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
+.|...|.+|...|+|++|+.+|.+++++.... .+....+..+...|.+|..+|+ +++|+..|
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~------~~~~~~a~~~~~~g~~y~~~~~-----------~~~A~~~~ 100 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------GNEDEAGNTYVEAYKCFKSGGN-----------SVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHHhCC-----------cHHHHHHH
Confidence 457778999999999999999999999986442 2223345677777777655554 59999999
Q ss_pred HHHHhcCccc------HHHHHHHHHHHHH-cCChHHHHHHHHhhHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHH
Q 009045 232 KESMQSDTRQ------AVVWNTLGLILLK-SGRLQSSISVLSSLLAVDPN------NCDCIGNLGIAYFQSGDMEQSAKC 298 (546)
Q Consensus 232 ~~al~~~p~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 298 (546)
++++++.+.. ..++..+|.++.. .|++++|+..|++++++.+. ...++..+|.++..+|+|++|+..
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 9999876654 5688889998865 69999999999999987432 245689999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHH-----HHHHHHH
Q 009045 299 FQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAH-----IWANLAN 373 (546)
Q Consensus 299 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~ 373 (546)
|++++...+............+. ..|.++...|++..|...++++++++|.... ....+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~ 246 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFL--------------KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHH--------------HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHH
T ss_pred HHHHHHhCccchhhhhhHHHHHH--------------HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHH
Confidence 99999988776543222222221 1234445899999999999999999886443 3445555
Q ss_pred HHHH--cCChHHHHHHHHHHHhcCC
Q 009045 374 AYYL--TGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 374 ~~~~--~g~~~~A~~~~~~al~~~p 396 (546)
++.. .+.+++|+..|+++.+++|
T Consensus 247 a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 247 AVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 5554 4568999999988887765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.3e-15 Score=117.31 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHH
Q 009045 278 CIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAA 357 (546)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 357 (546)
-+...|..++..|++++|+..|+++++.+|.++.++..+|.++. ..|++++|+..|.++
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~a 63 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA---------------------KKGDYQKAYEDGCKT 63 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc---------------------ccccccccchhhhhH
Confidence 35678999999999999999999999999999999999999998 899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009045 358 LKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAV 407 (546)
Q Consensus 358 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 407 (546)
++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.
T Consensus 64 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.9e-14 Score=130.96 Aligned_cols=203 Identities=8% Similarity=-0.017 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCC
Q 009045 134 SREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDN 213 (546)
Q Consensus 134 ~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (546)
.++...|++++...|.++.+|+..+..+...|+..... |..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~---------------------------------------~~~ 73 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK---------------------------------------GDM 73 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---------------------------------------SCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHH---------------------------------------HHH
Confidence 45666899999999999999987766554433211000 000
Q ss_pred ccccccChhhHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh-HHHHHHHHHHHHcCC
Q 009045 214 SLDKELEPEELEEILSKLKESMQS-DTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC-DCIGNLGIAYFQSGD 291 (546)
Q Consensus 214 ~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 291 (546)
....+..++|...|+++++. .|.+...|..++.++..+|+++.|...|++++...|.+. .+|..++......|+
T Consensus 74 ----~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~ 149 (308)
T d2onda1 74 ----NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 149 (308)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC
T ss_pred ----hhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Confidence 11234568999999999975 788888999999999999999999999999999999775 478999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 292 MEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 292 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
++.|+..|+++++..|.....+...+.... ...|+.+.|..+|++++...|+++..|...
T Consensus 150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~--------------------~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y 209 (308)
T d2onda1 150 IKSGRMIFKKAREDARTRHHVYVTAALMEY--------------------YCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHH--------------------HTSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------------------HhccCHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999999998888776544 146889999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCh
Q 009045 372 ANAYYLTGDHRSSGKCLEKAAKLEPNCM 399 (546)
Q Consensus 372 ~~~~~~~g~~~~A~~~~~~al~~~p~~~ 399 (546)
+..+...|+++.|..+|++++...|.++
T Consensus 210 ~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 210 IDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.3e-15 Score=123.47 Aligned_cols=104 Identities=8% Similarity=0.158 Sum_probs=98.8
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|+|++|+..|+++++.+|+++.+|+++|.++...|++++|+..|+++++++|++..+|..+|.++..+|++++|+.
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
.|++++.++|++..++..++.+..
T Consensus 100 ~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 100 DYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999887776653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.8e-16 Score=152.11 Aligned_cols=229 Identities=11% Similarity=-0.012 Sum_probs=155.9
Q ss_pred hhhhHHHHHhHhcCCCCcccccccCCC--CchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhc
Q 009045 105 SRISSKMDSALEFGVDADGDQSGLGTS--SSSREEKGLVHVARKMPKNAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILL 182 (546)
Q Consensus 105 ~~~~~~~~~al~~~~~~~~~~~~~g~~--~~~~a~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 182 (546)
.++ ..+.+|+.+.|+...++...|.+ ..++..++|++++..+|+.+..+...+.+. ...|..+++.+++..+...
T Consensus 4 eA~-q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~eaye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSA-QYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHH-HHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSS
T ss_pred HHH-HHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHHHHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccccc
Confidence 444 78999999999999999999999 667778899999999998877765444333 2236678888887775422
Q ss_pred ccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHH
Q 009045 183 RCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSI 262 (546)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 262 (546)
.. +.......+ .+.+ ....+.|+.|+..+.+++..+|.+...+..+|.++...|++++|+
T Consensus 81 ~~-------~~~~~~~~~--~~~l-----------~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 81 NP-------NRSEVQANL--SLFL-----------EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp CT-------TTTHHHHHH--HHHH-----------HHHHHHHHHHHHHHTC-----------------------------
T ss_pred Cc-------cHHHHHHHH--HHHH-----------HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHH
Confidence 11 111100000 0111 123567789999999999999999999999999999999999999
Q ss_pred HHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHH
Q 009045 263 SVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLD 342 (546)
Q Consensus 263 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (546)
..+++++..+| ..++..+|.++...|++++|+.+|+++++++|++...+..+|.++.
T Consensus 141 ~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~--------------------- 197 (497)
T d1ya0a1 141 KPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS--------------------- 197 (497)
T ss_dssp --CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH---------------------
T ss_pred HHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH---------------------
Confidence 99999988776 4688999999999999999999999999999999999999999988
Q ss_pred hhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 009045 343 QASAVNVAKECLLAALKADPKAAHIWANLANAYYLTG 379 (546)
Q Consensus 343 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 379 (546)
..|++.+|+.+|.+++...|..+.++.+|+.++....
T Consensus 198 ~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999887644
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.60 E-value=1.3e-14 Score=120.20 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
..+...|..+...|+|++|+..|+++++..+. ..+....
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~-----------------------------------------~~~~~~~ 66 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----------------------------------------SRAAAED 66 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------------------------------HHHHSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-----------------------------------------hhhhhhh
Confidence 34567899999999999999999999987432 1111222
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 009045 232 KESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPA 311 (546)
Q Consensus 232 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (546)
.+....+|....++.++|.++.++|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..
T Consensus 67 ~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 33445678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009045 312 ALINYAALLL 321 (546)
Q Consensus 312 ~~~~l~~~~~ 321 (546)
+...++.+..
T Consensus 147 ~~~~l~~~~~ 156 (169)
T d1ihga1 147 IQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.60 E-value=1.1e-12 Score=117.55 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSAKCFQDLILKDQNHPAALINY 316 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 316 (546)
||.+++.+|..+...+++++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++.+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 4678999999999999999999999999765 578899999999987 67899999999987754 467777788
Q ss_pred HHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 009045 317 AALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAA 392 (546)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al 392 (546)
+.++..... ...+.+.|+..++++.+..+ ..+...++..+.. ......|...+.+..
T Consensus 77 ~~~~~~~~~-----------------~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 137 (265)
T d1ouva_ 77 GNLYYSGQG-----------------VSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 137 (265)
T ss_dssp HHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred ccccccccc-----------------cchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhh
Confidence 777652111 35678889999999887644 5566667766664 344566666666554
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHh----cccHHHHHHHH
Q 009045 393 KLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKT----HHEVAAAFETE 468 (546)
Q Consensus 393 ~~~p~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 468 (546)
.. .+... +..+|..+.. ..+...+...+
T Consensus 138 ~~--~~~~~----------------------------------------------~~~L~~~~~~~~~~~~~~~~~~~~~ 169 (265)
T d1ouva_ 138 DL--NDGDG----------------------------------------------CTILGSLYDAGRGTPKDLKKALASY 169 (265)
T ss_dssp HT--TCHHH----------------------------------------------HHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred cc--cccch----------------------------------------------hhhhhhhhccCCCcccccccchhhh
Confidence 43 22333 3344444432 33555666666
Q ss_pred HhhccchhhhHHhhHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 009045 469 ENELSKMEECAGAGESAFLDQ----ASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKVLMV 540 (546)
Q Consensus 469 ~~~l~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 540 (546)
....+..+..+.+.+|.+|.. ..++++|+.+|+++.+. +++.++++||.+|.. ..++++|+++|++|.+.
T Consensus 170 ~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 170 DKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred hccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 777777778888999988887 66899999999999887 478999999999986 44899999999999876
Q ss_pred h
Q 009045 541 Y 541 (546)
Q Consensus 541 ~ 541 (546)
-
T Consensus 248 g 248 (265)
T d1ouva_ 248 G 248 (265)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.5e-15 Score=130.41 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
+..+...|..++..|+|++|+..|++++.++|+++.+|.++|.+|..+|++++|+.+|+++++++|++..+|+.+|.++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAA 365 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 365 (546)
.+|++++|+..|+++++++|++.
T Consensus 84 ---------------------~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 84 ---------------------EMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HCCCHHHHHHHHHHHHHhCcccH
Confidence 77777777777777777766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=8.1e-14 Score=115.11 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNC---------------DCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
+..+...|..++..|+|++|+..|++++...|... .++.++|.+|..+|++++|+..+++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 45667789999999999999999999998876542 234455666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHR 382 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 382 (546)
|+++.+++.+|.++. .+|++++|+..|+++++++|++..+...++.+....+...
T Consensus 93 p~~~~a~~~~g~~~~---------------------~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHL---------------------AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp TTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHH---------------------HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666665555555 5566666666666666666666666655555555444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.4e-13 Score=112.26 Aligned_cols=129 Identities=20% Similarity=0.147 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+...|..++..|+|++|+..|++++...|..... . .........
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--------------------------------~-~~~~~~~~~ 59 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------------------------S-NEEAQKAQA 59 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------------------------C-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--------------------------------c-hHHHhhhch
Confidence 5667789999999999999999999999986543110 0 000111111
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
-...++.++|.+|+++|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 60 ---------~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~ 130 (170)
T d1p5qa1 60 ---------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130 (170)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred ---------hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 11346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.+...++.+..
T Consensus 131 ~~~~~l~~~~~ 141 (170)
T d1p5qa1 131 AAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=1.2e-14 Score=124.73 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHH
Q 009045 275 NCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECL 354 (546)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (546)
++..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|. ..|++++|+.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~---------------------~~~~~~~Ai~~~ 61 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL---------------------KMQQPEQALADC 61 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---------------------HTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh---------------------hhhhhhhhhHHH
Confidence 35678899999999999999999999999999999999999999988 999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 355 LAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 355 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
+++++++|+++.+|+++|.+|..+|++++|+..|++++.++|++...
T Consensus 62 ~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 99999999999999999999999999999999999999998866543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.9e-14 Score=111.69 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
+..+..+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|.+...+..++.++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999988888888876
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANL 371 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 371 (546)
. +|.++...+++++|+.+|++++..++. +.....+
T Consensus 84 ~--------------lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 84 R--------------IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp H--------------HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred H--------------HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 3 577888888888888888888887765 4443333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.53 E-value=4.8e-14 Score=107.36 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
.++.+|.++++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~-- 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-- 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH--
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHH
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAAL 358 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 358 (546)
..|++++|++++++.|
T Consensus 96 -------------------~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 -------------------NEHNANAALASLRAWL 111 (112)
T ss_dssp -------------------HHHHHHHHHHHHHHHH
T ss_pred -------------------HCCCHHHHHHHHHHHh
Confidence 8899999999999876
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.52 E-value=8.7e-13 Score=108.66 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+...|..++..|+|.+|+..|++++...+.... .........
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~---------------------------------~~~~~~~~~-- 59 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG---------------------------------LSEKESKAS-- 59 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---------------------------------CCHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc---------------------------------cchhhhhhc--
Confidence 566888999999999999999999999987543210 001111111
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
.+....++.++|.||..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++.
T Consensus 60 -------~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~ 132 (168)
T d1kt1a1 60 -------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132 (168)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred -------chhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 1122457888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.+...++.+..
T Consensus 133 ~~~~~l~~~~~ 143 (168)
T d1kt1a1 133 AARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.51 E-value=8.4e-14 Score=106.00 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..++.+|.++...|++++|+..|++++..+|+++.++..+|.++. ..|++++|+.+|++
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~---------------------~~~~~~~A~~~~~~ 75 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA---------------------ENEKDGLAIIALNH 75 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh---------------------hhhhHHHhhccccc
Confidence 456889999999999999999999999999999999999999988 89999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 357 ALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 357 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
+++++|++..+|..+|.+|...|++++|++.+++.+
T Consensus 76 al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 76 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.51 E-value=3.9e-13 Score=108.77 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
+..+...|..++..|+|.+|+..|++++...+...... +.....
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~------------------------------------~~~~~~ 60 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD------------------------------------DQILLD 60 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh------------------------------------hHHHHH
Confidence 45577899999999999999999999998754331110 111111
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHP 310 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (546)
....+ ...++.++|.+|+++|++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 61 ~~~~~-----~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~ 135 (153)
T d2fbna1 61 KKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135 (153)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred hhhhH-----HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 11111 2357889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009045 311 AALINYAALLL 321 (546)
Q Consensus 311 ~~~~~l~~~~~ 321 (546)
.+...+..+..
T Consensus 136 ~~~~~l~~~~~ 146 (153)
T d2fbna1 136 DIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.50 E-value=4.6e-13 Score=110.35 Aligned_cols=130 Identities=12% Similarity=0.186 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN---------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKD 306 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (546)
+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.+|..+|++++|+..+++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 4567789999999999999999999999764432 2356678888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH-HH
Q 009045 307 QNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS-SG 385 (546)
Q Consensus 307 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~ 385 (546)
|++..+++.+|.++. .+|++++|+..|++++.++|++..++..++.+....+.+.+ ..
T Consensus 95 p~~~~a~~~~~~~~~---------------------~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 95 SANEKGLYRRGEAQL---------------------LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp TTCHHHHHHHHHHHH---------------------HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH---------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 888888888887777 78888888888888888888888888888887766665543 33
Q ss_pred HHHHHHH
Q 009045 386 KCLEKAA 392 (546)
Q Consensus 386 ~~~~~al 392 (546)
..|.+.+
T Consensus 154 k~~~~~f 160 (168)
T d1kt1a1 154 RTYANMF 160 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.50 E-value=2.8e-13 Score=109.65 Aligned_cols=126 Identities=19% Similarity=0.091 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
+..+...|..++..|+|.+|+..|++++...+...... +.........+. ...+.++|.++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~Nla~~~~ 78 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNIE-----ISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhHH-----HHHHhhHHHHHH
Confidence 34566788999999999999999999998765432100 000000001110 123444555554
Q ss_pred HhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhH
Q 009045 322 CKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMST 401 (546)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 401 (546)
++|++++|+..++++++++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+
T Consensus 79 ---------------------~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 79 ---------------------KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ---------------------HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 55556666666666666666666666666666666666666666666666666655555
Q ss_pred HHHHH
Q 009045 402 RYAVA 406 (546)
Q Consensus 402 ~~~l~ 406 (546)
...+.
T Consensus 138 ~~~l~ 142 (153)
T d2fbna1 138 RNSYE 142 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.3e-14 Score=107.78 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=93.6
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---ChHHHHHHHHhhHhcCCCC--hHHHHHHHHHHHHcCCH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVDPNN--CDCIGNLGIAYFQSGDM 292 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 292 (546)
++..+++++|.+.|++++..+|.++.+++++|.+++..+ ++++|+..|++++..+|.+ ..+++++|.+|..+|++
T Consensus 9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~ 88 (122)
T d1nzna_ 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence 456789999999999999999999999999999998754 5567999999999998765 45899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009045 293 EQSAKCFQDLILKDQNHPAALINYAALLL 321 (546)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 321 (546)
++|+.+|+++++++|++..+...++.+..
T Consensus 89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 89 EKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999887776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.49 E-value=4.9e-14 Score=112.74 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=92.9
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----------CChHHHHHHHHhhHhcCCCChHHHHHHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKS----------GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYF 287 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 287 (546)
+-+.+.|++|+..|+++++++|+++.+++++|.++... +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 45678899999999999999999999999999999854 55689999999999999999999999999998
Q ss_pred HcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 288 QSGD-----------MEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 288 ~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+|+ +++|+++|++++.++|++...+..++.+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 8764 68999999999999999998887777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.49 E-value=2.2e-13 Score=112.67 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009045 244 VWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCK 323 (546)
Q Consensus 244 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 323 (546)
.+...|..++..|+|.+|+..|+++++..+. ..+.........++|.....+.++|.++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~-- 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKL-- 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHH--
Confidence 3557899999999999999999999864221 01111112223344555555666666555
Q ss_pred hCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHH
Q 009045 324 YGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRY 403 (546)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 403 (546)
+.|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+..
T Consensus 89 -------------------~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~ 149 (169)
T d1ihga1 89 -------------------KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149 (169)
T ss_dssp -------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -------------------hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHH
Q 009045 404 AVAV 407 (546)
Q Consensus 404 ~l~~ 407 (546)
.+..
T Consensus 150 ~l~~ 153 (169)
T d1ihga1 150 ELLK 153 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.46 E-value=1.1e-13 Score=110.61 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=100.5
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS----------GDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
.+.+.+.|++|+..|+++++++|+++.+++++|.++... +.+++|+..|+++++++|++..+++++|.++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 456778899999999999999999999999999999854 5568999999999999999999999999999
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRS 383 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 383 (546)
...+.. .+......+.+++|+++|+++++++|++..++..|+.+....+.+.+
T Consensus 86 ~~~g~~----------~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 86 TSFAFL----------TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHcccc----------hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 743210 12233345668999999999999999999999888888654443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.8e-13 Score=105.20 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=59.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcC
Q 009045 282 LGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKAD 361 (546)
Q Consensus 282 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 361 (546)
++..+...+++++|.+.|++++.++|.++.+++++|.++.... ..+++++|+..|++++..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~------------------~~~d~~~Ai~~l~~~l~~~ 66 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR------------------YNDDIRKGIVLLEELLPKG 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS------------------SHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHHHhcc
Confidence 4445555556666666666666666666666666665554100 1334455666666666555
Q ss_pred CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHH
Q 009045 362 PKA--AHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAV 405 (546)
Q Consensus 362 p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 405 (546)
|.. ..+++++|.+|..+|++++|+.+|+++++++|++..+...+
T Consensus 67 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 443 33556666666666666666666666666666665555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.45 E-value=3e-11 Score=107.98 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 180 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 180 (546)
||++++.||..+...|++.+|+++|+++.+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~ 31 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL 31 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5789999999999999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.8e-12 Score=101.23 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHH
Q 009045 277 DCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLA 356 (546)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (546)
..+..+|..++..|+|++|+.+|+++++++|++..++.++|.++. +.|++++|+..|++
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---------------------~~~~~~~A~~~~~~ 63 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF---------------------EKGDYNKCRELCEK 63 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---------------------HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH---------------------HcCchHHHHHHHHH
Confidence 456789999999999999999999999999999999999999998 89999999999999
Q ss_pred HHhcCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 009045 357 ALKADPKAA-------HIWANLANAYYLTGDHRSSGKCLEKAAKLEPNC 398 (546)
Q Consensus 357 al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 398 (546)
+++++|.+. .++..+|.++..++++++|+.+|++++..+++.
T Consensus 64 al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 999988754 467788889999999999999999999988753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=6.9e-11 Score=86.26 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHH
Q 009045 150 NAHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILS 229 (546)
Q Consensus 150 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~ 229 (546)
+++-++.+|.++.+.|+|.+|+.+|++|+++.|....
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~------------------------------------------- 40 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------------------- 40 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------------------------------
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------------------------------
Confidence 4677899999999999999999999999998654311
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHc
Q 009045 230 KLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQS 289 (546)
Q Consensus 230 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 289 (546)
..++...++.++|.++.+.|++++|+..|+++++++|++..++.+++.+...+
T Consensus 41 -------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 41 -------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp -------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 12344678889999999999999999999999999999999999988765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=8.5e-11 Score=85.74 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 242 AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNN-------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
++-++.+|.++++.|+|++|+..|++++++.|.+ ..++.++|.++..+|++++|+.+|+++++++|++..++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 4567899999999999999999999999885543 678999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
+++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.16 E-value=4.1e-11 Score=97.06 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHH--HHHHHHcCChHHHHHHHHhhHhcCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 009045 242 AVVWNTL--GLILLKSGRLQSSISVLSSLLAVDPNN------------CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQ 307 (546)
Q Consensus 242 ~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (546)
..++..+ |..++..|+|++|+..|++++++.|+. ..+|.++|.+|..+|++++|+..+++++.+.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3444444 888899999999999999999987764 35788999999999999999999999998754
Q ss_pred CC----HHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCC
Q 009045 308 NH----PAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPK 363 (546)
Q Consensus 308 ~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 363 (546)
.. .........++. ++|.++..+|++++|+..|++++++.|.
T Consensus 87 ~~~~~~~~~~~~~~~a~~--------------~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVY--------------SRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHCCTTSTHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 21 111111111111 2345555999999999999999998654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.12 E-value=1.3e-10 Score=94.00 Aligned_cols=113 Identities=14% Similarity=0.020 Sum_probs=84.4
Q ss_pred HHHHHHH--HHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHH
Q 009045 151 AHAHFLL--GLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEIL 228 (546)
Q Consensus 151 ~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~ 228 (546)
..++..+ |..++..|+|++|+..|++++++.|+.............+.++.++|.+|..+|+ +++|+
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-----------~~~A~ 75 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-----------FDEAL 75 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-----------cchhh
Confidence 3445544 8889999999999999999999988764433222233345677788887755555 59999
Q ss_pred HHHHHHHhcCcc-----------cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCC
Q 009045 229 SKLKESMQSDTR-----------QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPN 274 (546)
Q Consensus 229 ~~~~~al~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 274 (546)
..++++++..|. ...+++++|.+|..+|++++|+..|++++++.|+
T Consensus 76 ~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 76 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999998876542 2346788899999999999999999999887553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.07 E-value=1.3e-10 Score=102.03 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=94.7
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAG 330 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 330 (546)
-.+..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++...+..++.++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~--------- 75 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK--------- 75 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH---------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---------
Confidence 34567888888888888888888888888888888888888888888888888888887777777766655
Q ss_pred cccccccchHHHhhcCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHH
Q 009045 331 AGANTGEGACLDQASAVNVAKECLLAAL-KADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTR 402 (546)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 402 (546)
..+..+++...+.+.. ...|.....+...+.++...|++++|...++++.+..|..+..+
T Consensus 76 ------------a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 76 ------------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp ------------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ------------hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 3333333333322221 12455566677778888899999999999999999988876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.04 E-value=9.8e-11 Score=102.89 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=107.0
Q ss_pred ccChhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 009045 218 ELEPEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 218 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 297 (546)
++..|++++|+..|+++++.+|+++.++..+|.+++..|++++|+..|+++++++|++..++..++.++...+..+++..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999887776666555
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHH
Q 009045 298 CFQDLILK-DQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIW 368 (546)
Q Consensus 298 ~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 368 (546)
.+.+.... .|.....+...+..+. ..|++++|+..++++.+..|..+..+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~---------------------~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSM---------------------VSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHH---------------------HHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HhhhhhcccCchHHHHHHHHHHHHH---------------------hCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44333222 3433444444455554 89999999999999999999865443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=1.7e-09 Score=88.87 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHH
Q 009045 151 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSK 230 (546)
Q Consensus 151 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~ 230 (546)
.+.+...|......|++++|+..|.+|+.+.+..... ++ ..+.+ .
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----~~--------------------------~~~~w-----~ 55 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD----DL--------------------------RDFQF-----V 55 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG----GG--------------------------TTSTT-----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc----cC--------------------------cchHH-----H
Confidence 5678899999999999999999999999986543100 00 00000 1
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 009045 231 LKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLIL 304 (546)
Q Consensus 231 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (546)
......+.+....++..++.++...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus 56 ~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 56 EPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 12223344566789999999999999999999999999999999999999999999999999999999999844
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=3.6e-09 Score=86.87 Aligned_cols=119 Identities=16% Similarity=0.070 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009045 241 QAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALL 320 (546)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 320 (546)
....+...|......|++++|+..|.+++.+.+......... +.+ .......+.+....++..++.++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999987664322111 111 11122233344455666666666
Q ss_pred HHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009045 321 LCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAA 392 (546)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 392 (546)
. ..|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 78 ~---------------------~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 78 I---------------------ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp H---------------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred H---------------------HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6 89999999999999999999999999999999999999999999999983
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=2.1e-06 Score=63.21 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---ChHHHHHHHHhhHhcCCCC-hHHHHHHHHHHHHcCCHHHHHH
Q 009045 222 EELEEILSKLKESMQSDTRQAVVWNTLGLILLKSG---RLQSSISVLSSLLAVDPNN-CDCIGNLGIAYFQSGDMEQSAK 297 (546)
Q Consensus 222 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 297 (546)
.++..-...|.+-..-.+. ..+.|..|.++.+.. +.++++..++.+++.+|.+ .++++.||..|+++|+|++|..
T Consensus 16 ~el~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 16 QQLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp HHHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444332333 678999999998764 5578999999999999876 4899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHH
Q 009045 298 CFQDLILKDQNHPAALINYAAL 319 (546)
Q Consensus 298 ~~~~al~~~p~~~~~~~~l~~~ 319 (546)
+++++++++|++..+......+
T Consensus 95 ~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 95 YVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHH
Confidence 9999999999999886544433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.26 E-value=1.2e-05 Score=61.77 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHH----cCCHHHHH
Q 009045 221 PEELEEILSKLKESMQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQ----SGDMEQSA 296 (546)
Q Consensus 221 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 296 (546)
..|+++|+.+|+++.+.. ++.+++.+|. ....++++|+.+|+++.+. .++.+.+.||.+|.. ..++++|+
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence 367899999999998764 5566777765 4567899999999999875 678999999999986 56799999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhhCccccccccccccchHHHhhcCHHHHHHHHHHHHhcCC
Q 009045 297 KCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECLLAALKADP 362 (546)
Q Consensus 297 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 362 (546)
++|+++.+. .++.+.+.+|.+|..-.+ -..++.+|+.+|+++.+...
T Consensus 80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~g-----------------v~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGL--NDQDGCLILGYKQYAGKG-----------------VVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhcc--CcchHHHHHHHHHHcCCc-----------------cCCCHHHHHHHHHHHHHCCC
Confidence 999999875 578889999998873111 24689999999999988643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=2.2e-06 Score=63.13 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHH
Q 009045 220 EPEELEEILSKLKESMQSDTRQ-AVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAY 286 (546)
Q Consensus 220 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 286 (546)
...+.++++.+++.+++.+|.+ .++++.+|..|+++|+|++|..+++++++++|++..+....-.+.
T Consensus 50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie 117 (124)
T d2pqrb1 50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 117 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 4577899999999999999876 489999999999999999999999999999999998876655543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=1.6e-05 Score=61.11 Aligned_cols=116 Identities=11% Similarity=-0.025 Sum_probs=94.9
Q ss_pred CChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCcccccccccc
Q 009045 256 GRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 335 (546)
Q Consensus 256 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 335 (546)
.++++|+.+|+++.+.. ++.+++.++. ....++++|+.+|+++.+. .++.+.+.+|.+|..-..
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~---------- 70 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 70 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccc----------
Confidence 47899999999998874 5667777774 3567899999999999865 688999999998873111
Q ss_pred ccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 009045 336 GEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYL----TGDHRSSGKCLEKAAKLEP 396 (546)
Q Consensus 336 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p 396 (546)
-..++++|+++|+++.+. .++.+.+.||.+|.. ..++++|+.+|+++.+...
T Consensus 71 -------~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 71 -------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp -------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 246799999999999875 568899999999987 5689999999999988754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.036 Score=51.66 Aligned_cols=213 Identities=15% Similarity=0.017 Sum_probs=121.9
Q ss_pred HHHHcCChHHHHHHHHhhHhcCCCChHHHHHHH----HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhhCc
Q 009045 251 ILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLG----IAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGS 326 (546)
Q Consensus 251 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 326 (546)
.-....+.+.|...+.......+.....+.... ......+..+.+...+........+.......++. ..
T Consensus 223 ~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al----- 296 (450)
T d1qsaa1 223 ASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-AL----- 296 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HH-----
T ss_pred HHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HH-----
Confidence 333445667777777666554444433322222 22233455666666666655443333222222222 22
Q ss_pred cccccccccccchHHHhhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChhHHHHHH
Q 009045 327 VLAGAGANTGEGACLDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVA 406 (546)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 406 (546)
..+++..+...+...-..........+.+|..+...|+.++|...|..+.. .++ .+-.++
T Consensus 297 ----------------~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LA 356 (450)
T d1qsaa1 297 ----------------GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVA 356 (450)
T ss_dssp ----------------HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHH
T ss_pred ----------------HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CCC---hHHHHH
Confidence 567899888888765433334578889999999999999999999999875 332 333444
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHhcccHHHHHHHHHhhccchhhhHHhhHHHH
Q 009045 407 VSRIKDAERSQEPTEQLSWAGNEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAF 486 (546)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~la~~ 486 (546)
...++...... ........... .........+..
T Consensus 357 a~~Lg~~~~~~-------------------~~~~~~~~~~~---------------------------~~~~~~~~ra~~ 390 (450)
T d1qsaa1 357 AQRIGEEYELK-------------------IDKAPQNVDSA---------------------------LTQGPEMARVRE 390 (450)
T ss_dssp HHHTTCCCCCC-------------------CCCCCSCCCCH---------------------------HHHSHHHHHHHH
T ss_pred HHHcCCCCCCC-------------------cCCCCccHHHh---------------------------hhcChHHHHHHH
Confidence 44333211000 00000000000 000111233446
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009045 487 LDQASAVNVAKECLLAALKADPKAAHIWANLANAYYLTGDHRSSGKCLEKV 537 (546)
Q Consensus 487 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (546)
+...|+...|...+..++.. .++.-...+|.+....|.++.|+....++
T Consensus 391 L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 391 LMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 77888888888888877653 34667778888888899999888776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.12 Score=47.93 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHH
Q 009045 152 HAHFLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKL 231 (546)
Q Consensus 152 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~ 231 (546)
...|..+.-....|++.++....... +- .| +...+..+..... +...... .+
T Consensus 7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~d---------yp-L~pYl~~~~l~~~-------------~~~~~~~----~i 58 (450)
T d1qsaa1 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KD---------YP-LYPYLEYRQITDD-------------LMNQPAV----TV 58 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TT---------ST-THHHHHHHHHHHT-------------GGGCCHH----HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhhh-cC---------CC-CHHHHHHHHHHhc-------------cccCCHH----HH
Confidence 45677778888888888776665553 11 22 1111111111110 0111222 24
Q ss_pred HHHHhcCcccHHHH---HHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 009045 232 KESMQSDTRQAVVW---NTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQN 308 (546)
Q Consensus 232 ~~al~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (546)
...++.+|+.+..- ...-..+...++++..+..| ...|.+....+.++.+....|+..+|...+..+......
T Consensus 59 ~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~ 134 (450)
T d1qsaa1 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS 134 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 45566788776543 33344566778887755544 346788888889999999999999999988888765554
Q ss_pred CHHHH
Q 009045 309 HPAAL 313 (546)
Q Consensus 309 ~~~~~ 313 (546)
.+...
T Consensus 135 ~p~~c 139 (450)
T d1qsaa1 135 QPNAC 139 (450)
T ss_dssp CCTHH
T ss_pred CchHH
Confidence 44443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.32 E-value=0.3 Score=42.73 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhcccchhccchhhHHHHHHHhhccccccccCCCccccccChhhHHHHHHHHHHH
Q 009045 155 FLLGLMYQRLGQPLKAVSSYEKAEEILLRCEADIARPELLSLVQIHHAQCLLPESSGDNSLDKELEPEELEEILSKLKES 234 (546)
Q Consensus 155 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~A~~~~~~a 234 (546)
-..|..+.+.|.|+.|..+|...- ++...+.. +...+++..|.+.+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-------------d~~rl~~~------------------~v~l~~~~~avd~~~k~ 66 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLAST------------------LVHLGEYQAAVDGARKA 66 (336)
T ss_dssp -----------CTTTHHHHHHHTT-------------CHHHHHHH------------------HHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-------------CHHHHHHH------------------HHhhccHHHHHHHHHHc
Confidence 456777788888888888887531 22221222 23556678888887765
Q ss_pred HhcCcccHHHHHHHHHHHHHcCChHHHHHHHHhhHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 009045 235 MQSDTRQAVVWNTLGLILLKSGRLQSSISVLSSLLAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALI 314 (546)
Q Consensus 235 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 314 (546)
++...|..+...+.+.....-|.-+ ...+. .++.-...+...|...|.+++.+.+++.++...+.+...+.
T Consensus 67 -----~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~ 137 (336)
T d1b89a_ 67 -----NSTRTWKEVCFACVDGKEFRLAQMC-GLHIV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 137 (336)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred -----CCHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHH
Confidence 4567888888888887776554221 11111 34455566778888999999999999999888888888777
Q ss_pred HHHHHHH
Q 009045 315 NYAALLL 321 (546)
Q Consensus 315 ~l~~~~~ 321 (546)
.++.++.
T Consensus 138 ~L~~lya 144 (336)
T d1b89a_ 138 ELAILYS 144 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.91 E-value=0.48 Score=41.36 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHh
Q 009045 447 AWAGFAAVQKTHHEVAAAFETEEN 470 (546)
Q Consensus 447 ~~~~l~~~~~~~~~~~~A~~~~~~ 470 (546)
.|-.+..+|...|++++|+...-.
T Consensus 176 l~~elv~Ly~~~~~~~~A~~~~i~ 199 (336)
T d1b89a_ 176 LWAELVFLYDKYEEYDNAIITMMN 199 (336)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHH
Confidence 466777788888888888776655
|