Citrus Sinensis ID: 009074

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccHHHcccccccccccHHHHHHHHHcccccccHHcHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccc
MIDLISNLLCSLFFAMSKITILCSMgadfalnlpvfpkLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHaaqkdddmppiEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWkdandkvmpVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEEslrgssngsgrstsdgrsisngssrrqslggadniskltsngfiskrtpssrslssstvlkhakgtsksfdggtrsldrskvllngspnqsidatkdsdtpntwkgnledkpsefqstdtedsvpgVLYDLLQKEVVALRKaghekdqslkdKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRakrfgntkgpvssaqllpgrnvprsgltrstq
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENlietknleikkindEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAvlaggaaanavRDYQRKVQEMNEERKTLDRELARAKVTANRVATvvanewkdandkvmPVKQWLEERRFLQGEMQQLRDRLAITERTakseaqlkekyHLRLKVLeeslrgssngsgrstsdgrsisngssrrqslggadniskltsngfiskrtpssrslssstvlkhakgtsksfdggtrslDRSKVLLngspnqsidatkdsdtpntwkgnledkpsefqstdtedsvPGVLYDLLQKEVVALRkaghekdqslkdkddaIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDhenrakrfgntkgpvssaqllpgrnvprsgltrstq
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPklteelskveeklklAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREleeavlaggaaanavRDYQRKVQEMNEERKTLDRELarakvtanrvatvvanEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEEslrgssngsgrstsdgrsisNGSSRRQSLGGADNISKLTSNGFIskrtpssrslssstvlkHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMrrevaamekevaamrveKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
**DLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEI**************************************ILAPL**************************************VQVALA*****************QIEICQEENKILD******VAEVEKLTQTVRELEEAVLAGGAAANAV**********************RAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQG****************************************************************************************************************************************************************GVLYDLLQKEVVAL*******************ILA************************************************************************
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLLQKEV*************************************************************************************************
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESL***************************GGADNISKLTSNGFISK***********************FDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLED***********DSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRAKRFGNTKGPVSSAQLLPGRNVP*********
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEES************************************************************************************************************************DSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAM************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MIDLISNLLCSLFFAMSKITILCSMGADFALNLPVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKSKEAALLEAERTVQVALAKASMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVLAGGAAANAxxxxxxxxxxxxxxxxxxxxxxxxxxxxANRVATVVANEWKDANDKVMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
Q8L7S4634 Microtubule-associated pr yes no 0.930 0.798 0.793 0.0
Q9C9X0622 Microtubule-associated pr no no 0.930 0.813 0.793 0.0
Q6Z746599 Microtubule-associated pr yes no 0.928 0.843 0.784 0.0
Q9ZUA3629 Microtubule-associated pr no no 0.920 0.796 0.772 0.0
Q9LQU7604 Microtubule-associated pr no no 0.919 0.827 0.762 0.0
Q2QLI6567 Microtubule-associated pr no no 0.886 0.850 0.744 0.0
Q653N3608 Microtubule-associated pr no no 0.895 0.800 0.735 0.0
Q8GYX3513 Microtubule-associated pr no no 0.810 0.859 0.509 1e-110
Q10PZ6515 Microtubule-associated pr no no 0.634 0.669 0.494 2e-86
>sp|Q8L7S4|MP702_ARATH Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1 Back     alignment and function desciption
 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/517 (79%), Positives = 465/517 (89%), Gaps = 11/517 (2%)

Query: 39  LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMP 98
           LTEEL+K++EKLKL E+++E+KNLEIKKIN+EK+ASMAAQFAAEATLRRVHAAQKDDDMP
Sbjct: 118 LTEELTKLDEKLKLTESILESKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMP 177

Query: 99  PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD 158
           PIEAILAPLEAELKLAR EI KLQ+DN+ALDRLTKSKEAALLEAERTV+ A+AKA+MVDD
Sbjct: 178 PIEAILAPLEAELKLARSEIGKLQEDNRALDRLTKSKEAALLEAERTVEAAMAKAAMVDD 237

Query: 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY 218
           LQNKNQELMKQIEICQEENKILD+MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY
Sbjct: 238 LQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY 297

Query: 219 QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEM 278
           QRK QEMNEERKTLDRELARAKVTANRVATVVANEWKD NDKVMPVKQWLEERRFLQGEM
Sbjct: 298 QRKFQEMNEERKTLDRELARAKVTANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEM 357

Query: 279 QQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQ 338
           QQLRD+LAIT+R AKSEAQLKEK+ LRLKVLEE+LRG+S+ + R+T + RS+SNG SRRQ
Sbjct: 358 QQLRDKLAITDRAAKSEAQLKEKFQLRLKVLEETLRGTSSSATRNTPEARSMSNGPSRRQ 417

Query: 339 SLGGADNISKLTSNGFISKRTPSSR-----SLSSSTVLKHAKGTSKSFDGGTRSLDRSKV 393
           SLGGA+N+ K TSNG +SK+ P+S+     S++S++VLK+AKGTSKSFDGGTRS+DR K 
Sbjct: 418 SLGGAENLQKFTSNGALSKKAPASQMRHSLSINSTSVLKNAKGTSKSFDGGTRSVDRGKA 477

Query: 394 LLNG----SPNQSIDATKDSDTPNTWKGNLEDKP-SEFQSTDTEDSVPGVLYDLLQKEVV 448
           LLNG    S N++ D +K++++ N WK N E+KP SE     TEDSVPGVLYDLLQKEVV
Sbjct: 478 LLNGPGNYSFNKATDDSKEAESGNGWKENSEEKPQSEDPEAATEDSVPGVLYDLLQKEVV 537

Query: 449 ALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD 508
           +LRKA +EKDQSLKDKDDAIE+LAKKV+TLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD
Sbjct: 538 SLRKASNEKDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD 597

Query: 509 HENRAKRFGNTKGPVSSAQLLPGRNVPRS-GLTRSTQ 544
            + RAKRF N+K P ++AQ+L GR   RS GLT+STQ
Sbjct: 598 QDARAKRFSNSKSPSNTAQILAGRAAGRSGGLTKSTQ 634
Plant-specific protein that interact with microtubules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9X0|MP701_ARATH Microtubule-associated protein 70-1 OS=Arabidopsis thaliana GN=MAP70.1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z746|MP702_ORYSJ Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica GN=MAP70.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUA3|MP703_ARATH Microtubule-associated protein 70-3 OS=Arabidopsis thaliana GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQU7|MP704_ARATH Microtubule-associated protein 70-4 OS=Arabidopsis thaliana GN=MAP70.4 PE=1 SV=1 Back     alignment and function description
>sp|Q2QLI6|MP701_ORYSJ Microtubule-associated protein 70-1 OS=Oryza sativa subsp. japonica GN=MAP70.1 PE=2 SV=1 Back     alignment and function description
>sp|Q653N3|MP703_ORYSJ Microtubule-associated protein 70-3 OS=Oryza sativa subsp. japonica GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GYX3|MP705_ARATH Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1 Back     alignment and function description
>sp|Q10PZ6|MP704_ORYSJ Microtubule-associated protein 70-4 OS=Oryza sativa subsp. japonica GN=MAP70.4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
225424380637 PREDICTED: microtubule-associated protei 0.930 0.794 0.877 0.0
224099555619 predicted protein [Populus trichocarpa] 0.928 0.815 0.881 0.0
224111438620 predicted protein [Populus trichocarpa] 0.928 0.814 0.875 0.0
255570071614 Myosin heavy chain, clone, putative [Ric 0.906 0.802 0.882 0.0
449526451610 PREDICTED: microtubule-associated protei 0.930 0.829 0.870 0.0
449449096615 PREDICTED: LOW QUALITY PROTEIN: microtub 0.930 0.822 0.870 0.0
356502384 1233 PREDICTED: uncharacterized protein LOC10 0.930 0.410 0.858 0.0
356519359 1268 PREDICTED: uncharacterized protein LOC10 0.930 0.399 0.860 0.0
356527851616 PREDICTED: microtubule-associated protei 0.928 0.819 0.846 0.0
356513048616 PREDICTED: microtubule-associated protei 0.928 0.819 0.846 0.0
>gi|225424380|ref|XP_002284904.1| PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera] gi|297737627|emb|CBI26828.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/516 (87%), Positives = 480/516 (93%), Gaps = 10/516 (1%)

Query: 39  LTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMP 98
           +TEELSKVEEKLKL E+L+E+KNLEIKKINDEK+ASMAAQFAAEATLRRVHAAQKDDDMP
Sbjct: 122 ITEELSKVEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMP 181

Query: 99  PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD 158
           PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD
Sbjct: 182 PIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDD 241

Query: 159 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY 218
           LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY
Sbjct: 242 LQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDY 301

Query: 219 QRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEM 278
           QRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDKVMPVKQWLEERRFLQGEM
Sbjct: 302 QRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEM 361

Query: 279 QQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQ 338
           QQLRD+LAITERTAKSEAQLKEKYHLRLKV+EESLRGSSN + RST + RS+SNG SRRQ
Sbjct: 362 QQLRDKLAITERTAKSEAQLKEKYHLRLKVIEESLRGSSNSNNRSTPEVRSVSNGPSRRQ 421

Query: 339 SLGGADNISKLTSNGFISKRTPS-----SRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKV 393
           SLGGADNISK   NGF+SKRTP+     S S  SS+VL+HAKGTSKSFDGGTRSLDR KV
Sbjct: 422 SLGGADNISKFIPNGFLSKRTPTSQLRSSLSSGSSSVLRHAKGTSKSFDGGTRSLDRGKV 481

Query: 394 LLNGS-P----NQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVV 448
           LLNG+ P    NQS DATKD +  + WKGN ++KP+EF   DTEDSVPGVLYD+LQKEVV
Sbjct: 482 LLNGTLPNYALNQSCDATKDIEVHDAWKGNSDEKPNEFPVVDTEDSVPGVLYDMLQKEVV 541

Query: 449 ALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD 508
           +LRKAGHEKDQSLKDKDDAIE+LAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD
Sbjct: 542 SLRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKD 601

Query: 509 HENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ 544
           HENRAKRFG++KGPVS+ QLLPGRN+ R GLTRSTQ
Sbjct: 602 HENRAKRFGSSKGPVSNTQLLPGRNIARGGLTRSTQ 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099555|ref|XP_002311531.1| predicted protein [Populus trichocarpa] gi|222851351|gb|EEE88898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111438|ref|XP_002315855.1| predicted protein [Populus trichocarpa] gi|222864895|gb|EEF02026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570071|ref|XP_002525998.1| Myosin heavy chain, clone, putative [Ricinus communis] gi|223534730|gb|EEF36422.1| Myosin heavy chain, clone, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449526451|ref|XP_004170227.1| PREDICTED: microtubule-associated protein 70-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449096|ref|XP_004142301.1| PREDICTED: LOW QUALITY PROTEIN: microtubule-associated protein 70-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502384|ref|XP_003519999.1| PREDICTED: uncharacterized protein LOC100815530 [Glycine max] Back     alignment and taxonomy information
>gi|356519359|ref|XP_003528340.1| PREDICTED: uncharacterized protein LOC100800667 [Glycine max] Back     alignment and taxonomy information
>gi|356527851|ref|XP_003532520.1| PREDICTED: microtubule-associated protein 70-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356513048|ref|XP_003525226.1| PREDICTED: microtubule-associated protein 70-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2200306622 MAP70-1 "microtubule-associate 0.902 0.789 0.664 4.3e-164
TAIR|locus:2826057634 MAP70-2 "microtubule-associate 0.902 0.774 0.663 1.3e-162
TAIR|locus:2006787604 MAP70-4 "AT1G14840" [Arabidops 0.891 0.802 0.622 3e-149
TAIR|locus:2130734513 MAP70-5 "microtubule-associate 0.762 0.808 0.393 2.9e-71
UNIPROTKB|P30622 1438 CLIP1 "CAP-Gly domain-containi 0.700 0.264 0.218 2.2e-05
POMBASE|SPAC27F1.02c161 cdc8 "tropomyosin" [Schizosacc 0.266 0.900 0.233 4.8e-05
UNIPROTKB|F1N775 1937 MYH8 "Uncharacterized protein" 0.352 0.099 0.224 0.00016
UNIPROTKB|Q8TBY8 1022 PMFBP1 "Polyamine-modulated fa 0.454 0.241 0.215 0.00018
UNIPROTKB|E1C472 1386 KIF27 "Uncharacterized protein 0.461 0.181 0.255 0.0002
UNIPROTKB|F1NPC4405 LOC429272 "Uncharacterized pro 0.417 0.560 0.219 0.00048
TAIR|locus:2200306 MAP70-1 "microtubule-associated proteins 70-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1597 (567.2 bits), Expect = 4.3e-164, P = 4.3e-164
 Identities = 331/498 (66%), Positives = 371/498 (74%)

Query:    54 ENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 113
             E+L+++KNLEIKKIN+EK+ASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL
Sbjct:   125 ESLLQSKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKL 184

Query:   114 ARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEIC 173
             AR EI KLQ+DN+ALDRLTKSKEAALL+AERTV+ ALAKA++VDDLQNKNQELMKQIEIC
Sbjct:   185 ARSEIGKLQEDNRALDRLTKSKEAALLDAERTVETALAKAALVDDLQNKNQELMKQIEIC 244

Query:   174 QEENKILDKMHRQKVAEVEKLTQTVREXXXXXXXXXXXXXXXRDYQRKVQEMNEERKTLD 233
             QEENKILD+MHRQKVAEVEKLTQTVRE               RDYQRK QEMNEERKTLD
Sbjct:   245 QEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKTLD 304

Query:   234 RELXXXXXXXXXXXXXXXXEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAK 293
             REL                EWKD NDKVMPVKQWLEERRFLQGEMQQLRD+LAI++R AK
Sbjct:   305 RELARAKVTANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEMQQLRDKLAISDRAAK 364

Query:   294 SEAQLKEKYHLRLKVLEEXXXXXXXXXXXXXXXXXXXXNGSSRRQSLGGADNISKLTSNG 353
             SEAQLK+K+ LRL+VLEE                    NG SRRQS+GG+DN+ K  SNG
Sbjct:   365 SEAQLKDKFQLRLRVLEETLRGTSSISIRNTPEGRSMSNGPSRRQSIGGSDNLQKFASNG 424

Query:   354 FIXXXX--XXXXXXXXXXXXXHAKGTSKSFDGGTRSLDRSKVLLNG----SPNQSIDATK 407
             F+                   +AKGTSKSFDGGTRSLDR K LL G    S N++ D TK
Sbjct:   425 FLSKKTPMRNSFTSNSTSVLKNAKGTSKSFDGGTRSLDRGKALLKGPGNYSFNKACDETK 484

Query:   408 DSDTPNTWKGNLEDKP-SEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDD 466
             +S++PNTWK + E+KP SE  +  TED+VPGVLYDLLQKEVVALRK+ HEKDQSLKDKDD
Sbjct:   485 ESESPNTWKEDSEEKPPSELPAPATEDNVPGVLYDLLQKEVVALRKSSHEKDQSLKDKDD 544

Query:   467 AIEILAKKVDTLTKAMEVEAKKMXXXXXXXXXXXXXXXXXKDHENRAKRFGNTKGPVSSA 526
             AIE+LAKKV+TLTKAMEVEAKKM                 KD +NRAKR  NTK   ++A
Sbjct:   545 AIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKDQDNRAKRSSNTKPSSNTA 604

Query:   527 QLLPGRNVPRSGLTRSTQ 544
             Q+L  R   RSGLTRSTQ
Sbjct:   605 QILAARAAGRSGLTRSTQ 622
GO:0005737 "cytoplasm" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=TAS
GO:0008017 "microtubule binding" evidence=IDA
GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA
GO:0009832 "plant-type cell wall biogenesis" evidence=IMP
GO:0010051 "xylem and phloem pattern formation" evidence=IMP
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2826057 MAP70-2 "microtubule-associated proteins 70-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006787 MAP70-4 "AT1G14840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130734 MAP70-5 "microtubule-associated proteins 70-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P30622 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPAC27F1.02c cdc8 "tropomyosin" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBY8 PMFBP1 "Polyamine-modulated factor 1-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C472 KIF27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPC4 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9X0MP701_ARATHNo assigned EC number0.79330.93010.8135nono
Q2QLI6MP701_ORYSJNo assigned EC number0.74450.88600.8500nono
Q9LQU7MP704_ARATHNo assigned EC number0.76250.91910.8278nono
Q6Z746MP702_ORYSJNo assigned EC number0.78400.92830.8430yesno
Q8L7S4MP702_ARATHNo assigned EC number0.79300.93010.7981yesno
Q653N3MP703_ORYSJNo assigned EC number0.73510.89520.8009nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030592001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (637 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
pfam07058351 pfam07058, Myosin_HC-like, Myosin II heavy chain-l 1e-160
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-05
TIGR03185650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
pfam13514 1118 pfam13514, AAA_27, AAA domain 0.001
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
>gnl|CDD|203570 pfam07058, Myosin_HC-like, Myosin II heavy chain-like Back     alignment and domain information 
 Score =  459 bits (1182), Expect = e-160
 Identities = 265/351 (75%), Positives = 295/351 (84%), Gaps = 6/351 (1%)

Query: 155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA 214
           MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKL+Q+VRELEEAVLAGGAAANA
Sbjct: 1   MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLSQSVRELEEAVLAGGAAANA 60

Query: 215 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFL 274
           VRDYQRK QEMNEERKTL+RELARAKV+ANRVATVVANEWKD NDKVMPVKQWLEERRFL
Sbjct: 61  VRDYQRKFQEMNEERKTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFL 120

Query: 275 QGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGS 334
           QGEMQQLRD+LAI++R AKSEAQLKEK+ LRLKVLEE L+G ++   R T+ GRS SNG 
Sbjct: 121 QGEMQQLRDKLAISDRAAKSEAQLKEKFKLRLKVLEEGLKGPNSSFVRPTTVGRSESNGP 180

Query: 335 SRRQSLGGADNISKLTSNGFISKRTPSSR-----SLSSSTVLKHAKGTSKSFDGGTRSLD 389
           +RRQSLGGA+   K TSNG +SK+ PSS+     +   STVLKHAKGTS SFDGGTRS+D
Sbjct: 181 TRRQSLGGAETSPKFTSNGGLSKKRPSSQLRGSLTGRISTVLKHAKGTSISFDGGTRSMD 240

Query: 390 RSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKP-SEFQSTDTEDSVPGVLYDLLQKEVV 448
           RSK+L NG  N  ++   +  T      + E K   E  +  +EDSVPGVLYDLLQKEV+
Sbjct: 241 RSKILANGPSNFPLNDKHEEGTSRGESPDSERKTEEEDGNAYSEDSVPGVLYDLLQKEVI 300

Query: 449 ALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE 499
           ALRKA  EKDQSL DKD+AIE+LAKKV+TLTKAMEVEAKKMRREVAAMEKE
Sbjct: 301 ALRKACEEKDQSLNDKDEAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKE 351

This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana. Length = 351
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
PF07058351 Myosin_HC-like: Myosin II heavy chain-like; InterP 100.0
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.5
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.37
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.34
PRK02224 880 chromosome segregation protein; Provisional 97.27
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.12
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.96
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.83
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.69
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.57
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 96.41
PHA02562562 46 endonuclease subunit; Provisional 96.4
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 96.36
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.3
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.25
PRK03918 880 chromosome segregation protein; Provisional 95.98
PRK04863 1486 mukB cell division protein MukB; Provisional 95.92
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.89
PRK11637428 AmiB activator; Provisional 95.76
PHA02562562 46 endonuclease subunit; Provisional 95.29
PF00038312 Filament: Intermediate filament protein; InterPro: 95.26
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.21
PRK02224880 chromosome segregation protein; Provisional 95.07
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.06
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.88
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.69
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.47
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.4
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.32
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.08
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.96
PF00038312 Filament: Intermediate filament protein; InterPro: 93.66
PRK09039343 hypothetical protein; Validated 93.58
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 93.16
PRK11637428 AmiB activator; Provisional 92.92
COG2433652 Uncharacterized conserved protein [Function unknow 92.63
KOG09961293 consensus Structural maintenance of chromosome pro 92.35
PRK03918 880 chromosome segregation protein; Provisional 92.19
PRK04863 1486 mukB cell division protein MukB; Provisional 91.87
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 91.81
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.75
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 91.51
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.11
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 90.93
PRK10884206 SH3 domain-containing protein; Provisional 89.89
KOG0996 1293 consensus Structural maintenance of chromosome pro 89.77
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 89.71
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 89.15
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 88.84
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 88.71
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 88.66
KOG2077 832 consensus JNK/SAPK-associated protein-1 [Signal tr 88.33
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 87.72
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.25
PF05852146 DUF848: Gammaherpesvirus protein of unknown functi 87.16
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 86.96
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.94
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 86.4
PF05701522 WEMBL: Weak chloroplast movement under blue light; 86.13
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.04
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 86.02
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 85.61
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 85.3
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 83.51
KOG1937521 consensus Uncharacterized conserved protein [Funct 83.26
COG5185622 HEC1 Protein involved in chromosome segregation, i 83.03
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 82.73
KOG0933 1174 consensus Structural maintenance of chromosome pro 82.29
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 82.25
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 81.45
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 81.39
PF135141111 AAA_27: AAA domain 81.08
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 80.21
COG4942420 Membrane-bound metallopeptidase [Cell division and 80.01
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=5.4e-156  Score=1146.78  Aligned_cols=341  Identities=80%  Similarity=1.071  Sum_probs=324.0

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHHHhhhHHH
Q 009074          155 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR  234 (544)
Q Consensus       155 ~V~dlQN~N~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLtqTv~ELEEAvLaggaaaNAvrdyqrq~~elneEkrtLer  234 (544)
                      |||||||+||||||||||||||||||||||||||+|||||||||+||||||||||||||||||||||++|||||++||||
T Consensus         1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR   80 (351)
T PF07058_consen    1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER   80 (351)
T ss_pred             CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhhhccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHhhc
Q 009074          235 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLR  314 (544)
Q Consensus       235 ELARaKv~AnRVA~vVAnEWKDendkVmPVKqWLEErR~LQGEmqrLrdKLAiaERtAkaEaQLKeK~~lRLk~LEe~lk  314 (544)
                      |||||||+||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||+||||||||||
T Consensus        81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk  160 (351)
T PF07058_consen   81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK  160 (351)
T ss_pred             HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccCCCCcccccCCCccccccccccccccCCCCCCCcc-----hhhhhhhccCCccccCCCCcccc
Q 009074          315 GSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLS-----SSTVLKHAKGTSKSFDGGTRSLD  389 (544)
Q Consensus       315 ~~~s~~~~~~~~~~~~s~gp~rr~s~gg~~~~~~~~sng~~~kr~~~sq~r~-----s~~~l~~a~~~s~sfdgg~rs~~  389 (544)
                      +++|+++++++++++.++||+||+++||+++++++++||++.+|+|+||||+     ++++|+|++++|+|||||++++|
T Consensus       161 ~~~s~~~~~~~~~~s~~~gps~r~~lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk~~~~~s~sfdgg~rsld  240 (351)
T PF07058_consen  161 GSSSNSSRPTSEGKSPSNGPSRRQSLGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLKHAKGTSKSFDGGSRSLD  240 (351)
T ss_pred             CCCCCCCCCCcCCCCCCCCCccCcCCCCccccccccCCCccccCCCcccccccccccchhhhcccccCccccccCCCcch
Confidence            9999999999999999999999999999999999999999999999999996     45689999999999999999999


Q ss_pred             ccccccCCC----CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhcccccccCh
Q 009074          390 RSKVLLNGS----PN-QSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDK  464 (544)
Q Consensus       390 ~~k~~~~~~----~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~D~Vsg~LYD~LQKEVi~LRKac~eKdqsLkdK  464 (544)
                      ++++..||.    ++ .+++.+..++..+++    +.++++.++++++|+||||||||||||||+||||||+|||||+||
T Consensus       241 ~~k~~~ng~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdK  316 (351)
T PF07058_consen  241 RSKVLANGPENHPVNSKSTDASKEAEKENSE----EKPNSEKPNSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDK  316 (351)
T ss_pred             hhhhhhcCccccccccchhhhhhhccccCcc----cccccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence            999999993    22 455555555544333    234456778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHH
Q 009074          465 DDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE  499 (544)
Q Consensus       465 ddaIeML~KKVdtLtKAmEVEaKKmrREvaa~EKE  499 (544)
                      ||||+||+|||||||||||||||||||||||||||
T Consensus       317 DdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE  351 (351)
T PF07058_consen  317 DDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE  351 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999999997

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 70.3 bits (171), Expect = 9e-13
 Identities = 73/443 (16%), Positives = 137/443 (30%), Gaps = 125/443 (28%)

Query: 93  KDDDMPPIEAILAPL--EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL 150
            + D   ++ +   +  + E+      I   +D      RL       L + E  VQ   
Sbjct: 31  DNFDCKDVQDMPKSILSKEEID----HIIMSKDAVSGTLRLF---WTLLSKQEEMVQKF- 82

Query: 151 AKASMVDDLQNKNQE-LMKQI-EICQE-----------------ENKILDKMHRQKVAEV 191
                V+++   N + LM  I    ++                 +N++  K +  ++   
Sbjct: 83  -----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 192 EKLTQTVRELEEA---VLAG--GA-----AANAVRDYQRKVQEMNE---------ERKTL 232
            KL Q + EL  A   ++ G  G+     A +    Y  KVQ   +            + 
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSP 195

Query: 233 DRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEE-----RRFLQGEMQQ-----LR 282
           +  L        ++   +   W   +D    +K  +       RR L+ +  +     L 
Sbjct: 196 ETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 283 DRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGG 342
           +            A+    ++L  K+L  +         R       +S  ++   SL  
Sbjct: 252 N---------VQNAKAWNAFNLSCKILLTT---------RFKQVTDFLSAATTTHISL-- 291

Query: 343 ADNISKLTSNGFISKRTPS-SRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQ 401
            D+ S           TP   +SL    +               R  D  + +L  +P +
Sbjct: 292 -DHHSM----TL----TPDEVKSLLLKYL-------------DCRPQDLPREVLTTNPRR 329

Query: 402 -SIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSV----PGVLYDLLQKEVVALRKAGHE 456
            SI A    D   TW  N +    +  +T  E S+    P     +  +  V    + H 
Sbjct: 330 LSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387

Query: 457 KDQSL------KDKDDAIEILAK 473
               L        K D + ++ K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK 410
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.8
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.41
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.9
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.5
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.72
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.67
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.67
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 91.81
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 88.96
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 88.5
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 85.55
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 83.97
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 82.65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=96.80  E-value=0.0023  Score=71.17  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=29.4

Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 009074           34 PVFPKLTEELSKVEEKLKLAENLIETKNLEIKKINDEKRA   73 (544)
Q Consensus        34 KaveEl~~El~K~dEKLk~tE~lle~kNLEiKklndEKK~   73 (544)
                      +-+.++.+++..+++++...+..+....-++..+..++..
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~  896 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL  896 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888888777666666666665553
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00