Citrus Sinensis ID: 009124

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
ccccccHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHcccccEEEEEEEcccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHEEEEEccccccccccccccccccccEEEEEEcccccccccHHccccccccHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATnhverpakEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINygrsrshmlnmahfkddsspnawdysAWVRSYALFLEERLECFRVLKydietdrprtkdldtaELLEHLPALQLLLFRVlgcqpqgaaVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSldigrgerfikieqppaSFLQAMEEYVkeaprgstfrkdqtvdnkvdapkeMMAIEykktpeveeakppsppppepvkveapvveppdllglddplpvaseldeKNALALAivpveqptsvaptqgngtaGWELALVtapssnenaTAASKLAGgldkltldslyddalrrnsqnasystwgpqpiagptmqpnghdpfyasgmvsaphSVQMAAMANQQHAFMLQQQQQQQMMMmapqqtanpfanpyaanvhpygsgmpvqaynpytglm
MSGGGTQKSFRKalgalkdtttvslakvnsdykeLDIAIVKatnhverpakekHIRAVFAsisatrpraDVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLkydietdrprtkdlDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKeaprgstfrkdqtvdnkvdapkeMMAIEYKktpeveeakppsppppepVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRrnsqnasystwgpqPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEllehlpalqlllFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTpeveeakppsppppepvkveapvveppdllglddplpvASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAManqqhafmlqqqqqqqmmmmapqqtaNPFANPYAANVHPYGSGMPVQAYNPYTGLM
***************ALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ****F***************************************************************************************ALALAIVPV*************TAGWELALV*********************LTLDSLY***********************************************************************************************************
************ALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVL*****************ELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQ*************************************************************************************************************************************************************************************GMV*******************************************************************
*********FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKT****************VKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHA***************PQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
*******KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAP*******************************************************PDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATA****AGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
Q9LHS0544 Putative clathrin assembl yes no 0.955 0.954 0.690 0.0
Q8LBH2571 Putative clathrin assembl no no 0.942 0.896 0.482 1e-138
Q9LVD8591 Putative clathrin assembl no no 0.856 0.786 0.513 1e-132
Q8VYT2601 Putative clathrin assembl no no 0.850 0.768 0.491 1e-132
P94017 692 Putative clathrin assembl no no 0.850 0.667 0.490 1e-129
Q9SA65599 Putative clathrin assembl no no 0.898 0.814 0.324 2e-60
Q8S9J8635 Probable clathrin assembl no no 0.955 0.817 0.302 3e-53
Q8GX47611 Putative clathrin assembl no no 0.900 0.800 0.296 3e-52
Q9ZVN6653 Clathrin coat assembly pr no no 0.532 0.442 0.328 1e-48
Q8LF20 653 Putative clathrin assembl no no 0.267 0.222 0.463 7e-33
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function desciption
 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/549 (69%), Positives = 426/549 (77%), Gaps = 30/549 (5%)

Query: 10  FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRA 69
            R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +ISATRPRA
Sbjct: 11  LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70

Query: 70  DVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHF 128
           DVAYCIHALA+RLS+THNW VALKTLIVIHRALREVD TFHEEVINY RSRSHMLNM+HF
Sbjct: 71  DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130

Query: 129 KDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQL 188
           KDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +LLE LPALQ 
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190

Query: 189 LLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA 248
           LLFRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQR+DA+KA
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250

Query: 249 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR 308
           LD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEAP  +  +
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAPLAAGVK 310

Query: 309 KDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEA--PVVEPPDLLGLDDP 366
           K+Q V+ K+ APKE++AIEY+  P+V E KP S   PEPVK EA  PV + PDLL +DDP
Sbjct: 311 KEQVVE-KLTAPKEILAIEYEIPPKVVEEKPAS---PEPVKAEAEKPVEKQPDLLSMDDP 366

Query: 367 LPVASELDEKNALALAIVP--VEQPTSVAP-TQGNGTAGWELALVTAPSSNENATAASKL 423
            P+ SEL+EKNALALAIVP  VEQP S    T GN T GWELALVTAPSSNE A A SKL
Sbjct: 367 APMVSELEEKNALALAIVPVSVEQPHSTTDFTNGNST-GWELALVTAPSSNEGAAADSKL 425

Query: 424 AGGLDKLTLDSLYDDALR-RNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSV 482
           AGGLDKLTLDSLY+DA+R    QN SY+ W   P+    M    H PFYAS  V+AP   
Sbjct: 426 AGGLDKLTLDSLYEDAIRVSQQQNRSYNPWEQNPVHNGHMM---HQPFYASNGVAAPQPF 482

Query: 483 QMAAMANQQHAFMLQQQQQQQMMM--------MAPQQTANPFANPYAANVHPYGSGMPVQ 534
           Q   MANQ H     Q Q   MMM           Q   NPF NP+ +N +P       Q
Sbjct: 483 Q---MANQNHQTFGYQHQNAGMMMGPVQQPYQQQQQNMNNPFGNPFVSNGNPQQP----Q 535

Query: 535 AYNPYTGLM 543
            YNPY   M
Sbjct: 536 GYNPYPRYM 544

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
359484228555 PREDICTED: putative clathrin assembly pr 1.0 0.978 0.796 0.0
356562967548 PREDICTED: putative clathrin assembly pr 0.985 0.976 0.799 0.0
357478253545 hypothetical protein MTR_4g115420 [Medic 0.992 0.988 0.810 0.0
356548512546 PREDICTED: putative clathrin assembly pr 0.981 0.976 0.788 0.0
255582313548 clathrin assembly protein, putative [Ric 0.996 0.987 0.841 0.0
449465625554 PREDICTED: putative clathrin assembly pr 0.998 0.978 0.809 0.0
297739011505 unnamed protein product [Vitis vinifera] 0.911 0.980 0.820 0.0
388505726548 unknown [Lotus japonicus] 0.990 0.981 0.759 0.0
147854711588 hypothetical protein VITISV_037564 [Viti 0.961 0.887 0.780 0.0
224087080548 predicted protein [Populus trichocarpa] 0.996 0.987 0.804 0.0
>gi|359484228|ref|XP_002285448.2| PREDICTED: putative clathrin assembly protein At5g35200 isoform 1 [Vitis vinifera] gi|359484230|ref|XP_003633084.1| PREDICTED: putative clathrin assembly protein At5g35200 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/555 (79%), Positives = 479/555 (86%), Gaps = 12/555 (2%)

Query: 1   MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFA 60
           MSGGGTQKS RKALGA+KD+TTV LAKVNSDYKELDIAIVKATNHVERPAKEKHIRA+F+
Sbjct: 1   MSGGGTQKSLRKALGAIKDSTTVGLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAIFS 60

Query: 61  SISATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVINYGRSR 119
           +ISATRPRADVAYCIHALA+RLSKTHNW VALKTL+VIHRALREVDPTFHEE+INYGRSR
Sbjct: 61  AISATRPRADVAYCIHALARRLSKTHNWAVALKTLVVIHRALREVDPTFHEELINYGRSR 120

Query: 120 SHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL 179
           SHMLN+AHFKDDSSPNAWDYSAWVR+YALFLEERLECFRVLKYDIETDRPRTK+LDT EL
Sbjct: 121 SHMLNLAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIETDRPRTKELDTVEL 180

Query: 180 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 239
           LE LPALQ LLFRVLGCQP GAAVHN VIQLALS+VA ES KIY AISDGTVNLVDKFFE
Sbjct: 181 LEQLPALQQLLFRVLGCQPHGAAVHNIVIQLALSMVALESIKIYSAISDGTVNLVDKFFE 240

Query: 240 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK 299
           MQR+DA+KAL+IYRRAG QAE+LSEFYE+CKSLDI RGERFIKIEQPPASFLQAMEEYV+
Sbjct: 241 MQRNDAVKALEIYRRAGSQAEKLSEFYEICKSLDIARGERFIKIEQPPASFLQAMEEYVR 300

Query: 300 EAPRGSTFRKD----QTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVV 355
           +APR ST RKD    Q V  K+ APK +++IEY K PEV+E  PPSPPPPEPVKVE PVV
Sbjct: 301 DAPRASTVRKDQETKQVVSEKLAAPKVVLSIEYNKAPEVQEEHPPSPPPPEPVKVEMPVV 360

Query: 356 EPPDLLGLDDPLPVASELDEKNALALAIVPV-EQPTSVAPTQGNGTAGWELALVTAPSSN 414
           EPPDLLGLDDP+P  +ELDEKNA+ALAIVPV E P S  P   NGT GWELALVTAPSSN
Sbjct: 361 EPPDLLGLDDPIPNTAELDEKNAMALAIVPVAETPPSAGPNPANGTTGWELALVTAPSSN 420

Query: 415 ENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASG 474
           ENATAASKLAGGLD LTLDSLYDDA+RRN+QN SY+ W P P+ GP MQ   HDPF+AS 
Sbjct: 421 ENATAASKLAGGLDMLTLDSLYDDAIRRNNQNVSYNPWQPVPMGGPMMQQTAHDPFFASN 480

Query: 475 MVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTA------NPFANPYAANVHPYG 528
            V+AP +VQMAAM NQQ AFMLQQQQQQQ   M            NPF NPY A  HPYG
Sbjct: 481 AVAAPPNVQMAAMGNQQQAFMLQQQQQQQQQQMMMMMGQQQQQPLNPFGNPYGATAHPYG 540

Query: 529 SGMPVQAYNPYTGLM 543
           SGMPVQ +NPY+G +
Sbjct: 541 SGMPVQTHNPYSGFI 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356562967|ref|XP_003549739.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|357478253|ref|XP_003609412.1| hypothetical protein MTR_4g115420 [Medicago truncatula] gi|355510467|gb|AES91609.1| hypothetical protein MTR_4g115420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548512|ref|XP_003542645.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|255582313|ref|XP_002531947.1| clathrin assembly protein, putative [Ricinus communis] gi|223528393|gb|EEF30429.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449465625|ref|XP_004150528.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] gi|449526473|ref|XP_004170238.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739011|emb|CBI28256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388505726|gb|AFK40929.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|147854711|emb|CAN83852.1| hypothetical protein VITISV_037564 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087080|ref|XP_002308057.1| predicted protein [Populus trichocarpa] gi|222854033|gb|EEE91580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.600 0.599 0.768 4.9e-168
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.298 0.269 0.707 1.3e-119
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.583 0.536 0.6 2.2e-118
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.548 0.521 0.602 1.3e-115
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.548 0.430 0.583 3.4e-109
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.267 0.222 0.463 2.5e-59
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.278 0.252 0.490 4.4e-57
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.272 0.242 0.464 3.9e-50
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.267 0.228 0.429 3.4e-46
TAIR|locus:2205558 653 AT1G05020 [Arabidopsis thalian 0.302 0.251 0.382 4.8e-40
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1302 (463.4 bits), Expect = 4.9e-168, Sum P(2) = 4.9e-168
 Identities = 252/328 (76%), Positives = 287/328 (87%)

Query:     3 GGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASI 62
             GGG+Q S R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +I
Sbjct:     4 GGGSQSSLRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAI 63

Query:    63 SATRPRADVAYCIHALAKRLSKTHNW-VALKTLIVIHRALREVDPTFHEEVINYGRSRSH 121
             SATRPRADVAYCIHALA+RLS+THNW VALKTLIVIHRALREVD TFHEEVINY RSRSH
Sbjct:    64 SATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSH 123

Query:   122 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEXXX 181
             MLNM+HFKDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +   
Sbjct:   124 MLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLE 183

Query:   182 XXXXXXXXXFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 241
                      FRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQ
Sbjct:   184 QLPALQELLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQ 243

Query:   242 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 301
             R+DA+KALD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEA
Sbjct:   244 RNDAVKALDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEA 303

Query:   302 PRGSTFRKDQTVDNKVDAPKEMMAIEYK 329
             P  +  +K+Q V+ K+ APKE++AIEY+
Sbjct:   304 PLAAGVKKEQVVE-KLTAPKEILAIEYE 330
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHS0CAP10_ARATHNo assigned EC number0.69030.95580.9540yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016968001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (551 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
pfam07651278 pfam07651, ANTH, ANTH domain 1e-102
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 2e-37
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 4e-33
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  310 bits (795), Expect = e-102
 Identities = 115/282 (40%), Positives = 169/282 (59%), Gaps = 17/282 (6%)

Query: 32  YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VA 90
             +L++A+VKAT+H E P K+KH+R +   +  T   A VA    AL++RL  T NW VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREI---LVGTSSPAKVAALFWALSRRLPLTRNWVVA 57

Query: 91  LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 150
           LK LI++H+ LRE  P+  +E++   R  S +L ++ F DDS    WDY A++R+YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 151 EERLECFRVLKYDIETDR-----------PRTK-DLDTAELLEHLPALQLLLFRVLGCQP 198
           +ERL+  R L  D   +R           P ++  +   +LL+ +P LQ LL  +L C+P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 199 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 258
            G A+ N  I  AL L+  ES  +Y AI++G +NL++KFFEM + DA  AL IY+R   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 259 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 300
            ERL EFYEVCK+L   R     K+   P + L A+EE++++
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.28
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.08
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 98.9
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.19
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.88
KOG2057499 consensus Predicted equilibrative nucleoside trans 96.45
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 94.66
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 94.53
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 94.45
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 94.19
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 94.08
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 93.51
cd03561133 VHS VHS domain family; The VHS domain is present i 93.22
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-88  Score=729.14  Aligned_cols=445  Identities=39%  Similarity=0.632  Sum_probs=346.8

Q ss_pred             HHHhhhcccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCCch-HH
Q 009124           12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNW-VA   90 (543)
Q Consensus        12 ka~GalKD~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~nW-Va   90 (543)
                      +++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++  +++++|+++|++||++|||| ||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4789999999999999998889999999999999999999999999999999875  89999999999999999999 99


Q ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhcccccccCCC-
Q 009124           91 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP-  169 (543)
Q Consensus        91 lKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~~~e~~-  169 (543)
                      +|+||||||||++|+++|.+++.++    .++|+|++|+|++++.+|||++|||+|++||+||++||+.+++|++..+. 
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~  154 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG  154 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence            9999999999999999999887543    36899999999999999999999999999999999999999999986532 


Q ss_pred             ----CCCCCC-hHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q 009124          170 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD  244 (543)
Q Consensus       170 ----~~~~l~-~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~D  244 (543)
                          ..+++. .+.+|+.+++||.||+++|+|+|.+.+++|.+|++||.+||+|||+||++||+||+||||+||+|+++|
T Consensus       155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~  234 (491)
T KOG0251|consen  155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD  234 (491)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence                445566 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHhCCCCCCCC-CCcccCC---CCCCc
Q 009124          245 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR-KDQTVDN---KVDAP  320 (543)
Q Consensus       245 a~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrda~~~~~~~-~~~~~~~---~~~~~  320 (543)
                      |+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+... .......   +....
T Consensus       235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (491)
T KOG0251|consen  235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESS  314 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccccchhcc
Confidence            9999999999999999999999999999999999999999999999999999999976332211 0000000   00000


Q ss_pred             cc------c-c--c-ccCCCCCCccCCCCCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccchhhhhcccccccccCCC
Q 009124          321 KE------M-M--A-IEYKKTPEVEEAKPPSPPPPEPVKVEAP--VVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQ  388 (543)
Q Consensus       321 ~~------~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dll~l~~~~~~~~~~~~~~~lala~~~~~~  388 (543)
                      +.      . +  . ++..+.+.+..+.  .+.+.++++.+.+  .+.++|++.+.+..+..++.+..|+||||+ .+ .
T Consensus       315 e~~~~~~~~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~  390 (491)
T KOG0251|consen  315 ESSSRLEEPEEQKEVIEELQEPLEQEED--QPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-PF-P  390 (491)
T ss_pred             ccccccccchhhhhcccccccccccccc--CCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-CC-C
Confidence            00      0 0  0 1222211111110  1111111111111  123345666666677899999999999998 32 1


Q ss_pred             CCCCCCCCCCCCCcceeeeccCCCCCchhhhhhhhcCCcchhhhhhhhhHHHHHhhcc---CCCCCC--CCCCCCCCCCC
Q 009124          389 PTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQN---ASYSTW--GPQPIAGPTMQ  463 (543)
Q Consensus       389 ~~~~~~~~~~~~~~wElalV~~~s~~~~~~~~~~l~gg~d~l~Ld~~y~~~~~~~~~~---~~~g~~--~~~p~~~~~~~  463 (543)
                              ....++||+++|+..++.....+..++||||   +||||| ++.+|+.+.   +++|++  ...|. ..+.-
T Consensus       391 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~  457 (491)
T KOG0251|consen  391 --------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-PAMAA  457 (491)
T ss_pred             --------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCccccCCc-hhhhc
Confidence                    3456788888888666533221112899999   999999 777776542   334532  11221 11111


Q ss_pred             CCCCCccccccCCCCC
Q 009124          464 PNGHDPFYASGMVSAP  479 (543)
Q Consensus       464 ~~~~dpFaaS~~v~pp  479 (543)
                      ..+.+||..|..+++|
T Consensus       458 ~~~~~~~~~~~~~a~~  473 (491)
T KOG0251|consen  458 LPQPYPVGQPPFPAQL  473 (491)
T ss_pred             ccccCCCCCCCCcCcc
Confidence            2233777777777776

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 7e-21
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 9e-21
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 3e-18
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 5e-18
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 3e-16
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 13/266 (4%)
Query: 38  AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWVALKTLIVI 97
            + KAT H     K+KH+  +           ++     +L +R + +   V  K+LI  
Sbjct: 32  TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITT 89
Query: 98  HRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 157
           H  +       +E  I Y  SR+ + N+++F D S    +D S ++R Y+ +L E+   +
Sbjct: 90  HHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 158 RVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLAL 212
           R + +D  T   R  D     ++T +              +L        + N VI  A 
Sbjct: 146 RQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAF 204
Query: 213 SLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSL 272
            L+  ++ +++ A ++G +NL++K+F+M+++   + LDIY++   +  R+SEF +V + +
Sbjct: 205 MLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 264
Query: 273 DIGRGERFIKIEQPPASFLQAMEEYV 298
            I RG+    + Q P+S L A+E+++
Sbjct: 265 GIDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 4e-88
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 2e-83
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 8e-83
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  272 bits (695), Expect = 4e-88
 Identities = 68/279 (24%), Positives = 136/279 (48%), Gaps = 14/279 (5%)

Query: 5   GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
           G+      +  +L D  T +   V      +   + KAT H     K+KH+  +   I  
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVT--GSAVSKTVCKATTHEIMGPKKKHLDYL---IQC 55

Query: 65  T-RPRADVAYCIHALAKRLSKTHNWVALKTLIVIHRALREVDPTFHEEVINYGRSRSHML 123
           T     ++     +L +R + +   V  K+LI  H  +   +  F    I Y  SR+ + 
Sbjct: 56  TNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF----IQYLASRNTLF 111

Query: 124 NMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP----RTKDLDTAEL 179
           N+++F D S    +D S ++R Y+ +L E+   +R + +D    +       + ++T +L
Sbjct: 112 NLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKL 171

Query: 180 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 239
           L+ +P +Q  +  +L        + N VI  A  L+  ++ +++ A ++G +NL++K+F+
Sbjct: 172 LKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFD 231

Query: 240 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGE 278
           M+++   + LDIY++   +  R+SEF +V + + I RG+
Sbjct: 232 MKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGD 270
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.4
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.38
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.06
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.05
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.17
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.02
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 94.47
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 94.43
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 94.35
3g2s_A149 C-terminal fragment of sortilin-related receptor; 94.25
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 94.1
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 94.06
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 93.76
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 93.08
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=4.7e-73  Score=580.44  Aligned_cols=275  Identities=25%  Similarity=0.440  Sum_probs=242.7

Q ss_pred             hHHHHHHhhhc-ccccchhhcccCCChhHHHHHHHhcCCCCCCcchhhHHHHHHHHhcCCCCCcHHHHHHHHHhhhccCC
Q 009124            8 KSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH   86 (543)
Q Consensus         8 ~~lrka~GalK-D~tsiglAkv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~T~~srp~~~v~~~v~aL~rRL~kT~   86 (543)
                      ++||+++|++| |+|+.          ++++||+|||+|+++|||+||||+||.+|+.++  +++++|+|+|.+| .+++
T Consensus         6 ~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-~~~~   72 (299)
T 1hx8_A            6 QTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-SQNA   72 (299)
T ss_dssp             ----------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-HTCS
T ss_pred             HHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-ccCC
Confidence            59999999999 88885          466799999999999999999999999999875  7899999999999 5899


Q ss_pred             ch-HHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCcccccccCCCCC-----------CCCCchhHHHHHHHHHHHHHH
Q 009124           87 NW-VALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEERL  154 (543)
Q Consensus        87 nW-ValKtLIllHrLLreG~p~f~eell~y~~sr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLdeRL  154 (543)
                      || ||||+|||||||||||||.|.+++    ++++++|+|++|+|+++           +.+||||.|||+|++||++|+
T Consensus        73 ~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~  148 (299)
T 1hx8_A           73 NWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS  148 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence            99 999999999999999999987766    33567999999999865           357899999999999999999


Q ss_pred             HHhhhcccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 009124          155 ECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDG  229 (543)
Q Consensus       155 ~~~r~~~~d~~~e-----~~~~~~l~~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dg  229 (543)
                      .+|+..++|++..     ..++++|++++||++++.||+|||++++|++.+.+.+|+|+++||++||+||++||+++|+|
T Consensus       149 ~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~g  228 (299)
T 1hx8_A          149 LSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG  228 (299)
T ss_dssp             HHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998642     23789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009124          230 TVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  300 (543)
Q Consensus       230 iinLLe~fFeM~~~Da~kal~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd  300 (543)
                      |+||||+||+|++.||++||+||+||.+|+++|++||++||++++++ ++||+|+++|++|+++|||||++
T Consensus       229 i~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999977 89999999999999999999986
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 543
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 2e-55
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 3e-55
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 2e-39
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 2e-39
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 2e-20
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  180 bits (458), Expect = 2e-55
 Identities = 36/130 (27%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 169 PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD 228
              + ++  +LL+ LP LQ  L  +L    Q   + N VI ++  L+  +  +++   +D
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 229 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPA 288
           G +NL++K+F+M +  A  ALD+Y++   + +R+ EF +V +++ I +G+    + + P+
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGD-IPDLTKAPS 120

Query: 289 SFLQAMEEYV 298
           S L A+E+++
Sbjct: 121 SLLDALEQHL 130
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.81
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 94.68
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 94.43
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 94.16
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 93.01
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 92.05
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4e-39  Score=291.27  Aligned_cols=130  Identities=27%  Similarity=0.520  Sum_probs=127.5

Q ss_pred             CCCCCChHHHHhhHHHHHHHHHHHHcCccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 009124          170 RTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKAL  249 (543)
Q Consensus       170 ~~~~l~~~~LL~~L~~LQ~Lld~lL~crp~g~a~~N~~vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kal  249 (543)
                      .+|+|++++||++++++|+||+++++|+|.+++++|.|+++||++||+||++||+.+|+|||||||+||+|+++||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009124          250 DIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  300 (543)
Q Consensus       250 ~IYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~~L~~LEEylrd  300 (543)
                      +||+||.+|+++|++||+|||++|++| .+||+|+++|++++++|||||++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999987 69999999999999999999985
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure