Citrus Sinensis ID: 009176
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| 255553415 | 521 | conserved hypothetical protein [Ricinus | 0.957 | 0.994 | 0.664 | 0.0 | |
| 224124716 | 511 | predicted protein [Populus trichocarpa] | 0.942 | 0.998 | 0.668 | 0.0 | |
| 356500916 | 525 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.979 | 0.644 | 0.0 | |
| 224146647 | 507 | predicted protein [Populus trichocarpa] | 0.935 | 0.998 | 0.653 | 0.0 | |
| 356537626 | 512 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.996 | 0.631 | 1e-179 | |
| 356569475 | 510 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.998 | 0.607 | 1e-172 | |
| 225434394 | 531 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.971 | 0.575 | 1e-156 | |
| 115464465 | 561 | Os05g0475700 [Oryza sativa Japonica Grou | 0.959 | 0.925 | 0.503 | 1e-149 | |
| 449455122 | 530 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.971 | 0.551 | 1e-142 | |
| 242088239 | 531 | hypothetical protein SORBIDRAFT_09g02332 | 0.959 | 0.977 | 0.477 | 1e-141 |
| >gi|255553415|ref|XP_002517749.1| conserved hypothetical protein [Ricinus communis] gi|223543147|gb|EEF44681.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/542 (66%), Positives = 426/542 (78%), Gaps = 24/542 (4%)
Query: 1 MPLNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF 60
MP +SN QWLSLVG IWLQS+NGTN+NFPAYSSQLKQLLS+SQLQLNNLAFASDAGKLF
Sbjct: 1 MPPSSNAYQWLSLVGIIWLQSVNGTNTNFPAYSSQLKQLLSMSQLQLNNLAFASDAGKLF 60
Query: 61 GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICW 120
G+ SG+AS YLPLWLVLLIG+TLGLIGYG+QYLFLT IS LSYAHIFLLTV+AGNSICW
Sbjct: 61 GFFSGIASFYLPLWLVLLIGATLGLIGYGVQYLFLTSYISSLSYAHIFLLTVVAGNSICW 120
Query: 121 INTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSI 180
INTVCYVVTI+NFP DRQVAVG+T+SY GLSAK+YT V+A+ S P KRAK YLL NSI
Sbjct: 121 INTVCYVVTIRNFPSDRQVAVGLTTSYQGLSAKIYTVLVDALFFSFPAKRAKAYLLLNSI 180
Query: 181 FPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLK 240
PL+ + +PVVR+I + ++ R GF+ MFF+TI TG YAV+ SL S
Sbjct: 181 LPLVVSAIAAPVVRDI-------NIGYGKKMRTGFMIMFFITIATGVYAVITSLGGSG-- 231
Query: 241 TLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDK-RLINRVKRVHNSTSIEEVS-SRLE 298
LPP+ N IG+++ LLAP VIP+ KIR + K LIN +V+N T+ E V R+E
Sbjct: 232 --LPPLGNAIGVMLLLLAPFVIPMAVKIREVLLSKWLLINTEAKVYNFTAEENVDVERME 289
Query: 299 NGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFL 358
N V E+ D + ++ G K+EIG +ML+RV+FWLYF VY GATLGLV+L
Sbjct: 290 NSVKEGED-DRKESSEE--------GVKDEIGVKMMLKRVNFWLYFTVYLCGATLGLVYL 340
Query: 359 NNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418
NNLGQIAESRG SGTSSLVSLSSSFGFFGRL+PSL YFFSRS+H+I PASI ALMAPM
Sbjct: 341 NNLGQIAESRGYSGTSSLVSLSSSFGFFGRLMPSLVDYFFSRSRHLISRPASIAALMAPM 400
Query: 419 AGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478
GAF LLLN++N++LY STAIIGVC+GAITSISV+TTTELFGTKNFS+NHN+VVANIPIG
Sbjct: 401 TGAFFLLLNKSNISLYISTAIIGVCTGAITSISVSTTTELFGTKNFSINHNVVVANIPIG 460
Query: 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYS 538
SF+FG LAA++YH+EG GKC+G+ CY +TFI+WGS C G FLALIL+ R RKF S
Sbjct: 461 SFIFGSLAAVIYHREGDG--EGKCIGLRCYTNTFIIWGSLCFLGAFLALILHVRIRKFCS 518
Query: 539 QR 540
++
Sbjct: 519 EK 520
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124716|ref|XP_002319404.1| predicted protein [Populus trichocarpa] gi|222857780|gb|EEE95327.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/537 (66%), Positives = 431/537 (80%), Gaps = 27/537 (5%)
Query: 3 LNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGW 62
+ S LQWLSLVG IWLQS+NGTNSNFPAYSSQLKQLLS+SQ+QLNNLAFASDAGKLFG+
Sbjct: 1 MASKTLQWLSLVGIIWLQSVNGTNSNFPAYSSQLKQLLSMSQVQLNNLAFASDAGKLFGF 60
Query: 63 ISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWIN 122
SG+AS+YLPLW+VLLIGSTLGL GYGLQYLF+T+ IS LSYAHIFLLTVLAGNSICWIN
Sbjct: 61 FSGIASLYLPLWVVLLIGSTLGLAGYGLQYLFITNQISSLSYAHIFLLTVLAGNSICWIN 120
Query: 123 TVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFP 182
TVCYVVTI+NFP DRQVAVG+T+SY GLSAK+YT V+++ T SP KRAK YLL +S+ P
Sbjct: 121 TVCYVVTIQNFPSDRQVAVGLTTSYQGLSAKIYTVLVDSL-TFSPVKRAKAYLLLSSLSP 179
Query: 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242
LL VV +P VR++ + + + GFV MF +TI TG YAV+ SL +
Sbjct: 180 LLVSVVAAPFVRDV-------NVGTSTNMKVGFVVMFVITIATGVYAVVSSLGSVSSR-- 230
Query: 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVA 302
LPP+ N IGI++ LLAPL IP+ EK++ ++ + +V+ ++ + R+E+G+
Sbjct: 231 LPPLCNAIGILVFLLAPLAIPMAEKMK-----EKFLKGEMKVYIEENVGDHVERIESGI- 284
Query: 303 TKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLG 362
K E DH R+ + +G KEEIG MLML+RV+FWLYFFVY SGATLGLV+LNNLG
Sbjct: 285 -KVEDDHT-REGE-------VGVKEEIGVMLMLKRVNFWLYFFVYLSGATLGLVYLNNLG 335
Query: 363 QIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAF 422
QIAESRGCSGTSSLVSLSSSFGFFGRL+PSL +F S+S++MI PA IG LMAPMAGAF
Sbjct: 336 QIAESRGCSGTSSLVSLSSSFGFFGRLMPSLLDFFLSKSRYMISRPACIGVLMAPMAGAF 395
Query: 423 MLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLF 482
LLLN N++LY STAIIGVC+GAITSISV+TTTELFGTKNFS+NHN+VVANIPIGSFLF
Sbjct: 396 FLLLNTANISLYISTAIIGVCTGAITSISVSTTTELFGTKNFSINHNVVVANIPIGSFLF 455
Query: 483 GYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQ 539
GY AAL+YH+EG+ +GKCMGM CYRSTF++WGS CLFG+FLAL+L+AR RKF+S
Sbjct: 456 GYSAALLYHREGN--EDGKCMGMECYRSTFMIWGSLCLFGSFLALVLHARLRKFHSH 510
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500916|ref|XP_003519276.1| PREDICTED: uncharacterized protein LOC100808034 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/535 (64%), Positives = 415/535 (77%), Gaps = 21/535 (3%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVAS 68
QWLSLVG IWLQSINGTN+NFPAYSSQLKQLLS+SQ QLNNLAFASDAGKLFG+ SG+A+
Sbjct: 8 QWLSLVGIIWLQSINGTNTNFPAYSSQLKQLLSMSQFQLNNLAFASDAGKLFGFFSGMAA 67
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
+LPLWLVL+IGSTLGLIGYG+QYLF+++ IS LSY H+FLLTVLAGNSICWINTVCYV+
Sbjct: 68 FHLPLWLVLMIGSTLGLIGYGVQYLFISNQISSLSYWHVFLLTVLAGNSICWINTVCYVI 127
Query: 129 TIKNFPFD-RQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACV 187
TI+NF D RQVAVG+T+SY GLSAK++TS V+A+ S +K+AK +L NS PL+ +
Sbjct: 128 TIRNFSSDHRQVAVGLTTSYQGLSAKIFTSIVDAV---SLHKKAKTFLFLNSFLPLIVAL 184
Query: 188 VTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVK 247
+ +PVVREI + ++ + GFV MF +TI TG YAV+ SL+ K + P+
Sbjct: 185 IAAPVVREI----EAVTTRPKHIMSVGFVVMFVITIATGIYAVMSSLEFVSSK--ISPLG 238
Query: 248 NLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIE--EVSSRLENGVATKE 305
+LIG+++ LL PL++PL KI V +RV++ TS E + R+EN V KE
Sbjct: 239 SLIGMLVSLLFPLLVPLSMKINALVGSWHKNREKQRVYHFTSEESHDDEGRIENEV--KE 296
Query: 306 EVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA 365
D + + + G+G +EEIG LML+R+DFWLYFFVY GATLGLVFLNNLGQIA
Sbjct: 297 GEDSREVNQEV-----GIGIREEIGVKLMLRRIDFWLYFFVYLFGATLGLVFLNNLGQIA 351
Query: 366 ESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLL 425
ESRG S TSSLVSLSSSFGFFGRL+PS+ YF+ R K I PAS+ ALMAP AG+F LL
Sbjct: 352 ESRGYSRTSSLVSLSSSFGFFGRLMPSIVDYFY-RGKCTISRPASMVALMAPTAGSFFLL 410
Query: 426 LNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYL 485
L+ TN+ALY TAIIGVC+GAITSISV+TTTELFGTKNFSVNHN+VVANIP+GSFLFGYL
Sbjct: 411 LHNTNLALYVGTAIIGVCTGAITSISVSTTTELFGTKNFSVNHNVVVANIPVGSFLFGYL 470
Query: 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540
AA VYHK GH+ H GKCMGM CYR TFI+WGS C FGTFLA +L+ RTRKFYS +
Sbjct: 471 AAFVYHKGGHHEH-GKCMGMECYRDTFIIWGSLCFFGTFLAFVLHVRTRKFYSYK 524
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146647|ref|XP_002326082.1| predicted protein [Populus trichocarpa] gi|222862957|gb|EEF00464.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/539 (65%), Positives = 423/539 (78%), Gaps = 33/539 (6%)
Query: 3 LNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGW 62
++SN LQWL+LV IWLQS+NGTN+ FPAYS QLK+LLS+SQ +LNNL+FASDAGKLFG+
Sbjct: 1 MSSNALQWLTLVVIIWLQSVNGTNTTFPAYSPQLKELLSMSQTELNNLSFASDAGKLFGF 60
Query: 63 ISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWIN 122
+SG+A++YLPLWLVLLIGSTLG +GYGLQYLF+TH IS LSY HIFLLTVLAGNSICWIN
Sbjct: 61 LSGMAALYLPLWLVLLIGSTLGFVGYGLQYLFITHQISSLSYVHIFLLTVLAGNSICWIN 120
Query: 123 TVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFP 182
TVCYVV I+NFP DRQV+VG+T+SY GLSAK+YT V+A+ SP+KRA+ YLL NSI P
Sbjct: 121 TVCYVVIIQNFPSDRQVSVGLTTSYQGLSAKIYTVLVDAL-FFSPDKRARGYLLLNSISP 179
Query: 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242
L+ CV+ +P VR++ E+ + GF+ MF +TI TG YAV+ S L L +
Sbjct: 180 LVVCVLAAPFVRDVNVGTSEN-------MKAGFIVMFLITIATGIYAVISS--LGSLPSR 230
Query: 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLIN-RVKRVHNSTSIEEVSSRLENGV 301
+PP+ N+IGI + LLAPL IP+ EKIR + + ++N +++ +E R+E+G+
Sbjct: 231 IPPLGNVIGISVFLLAPLAIPIAEKIREVLLNGEIMNVYIEKNVGDDRVE----RIESGI 286
Query: 302 ATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNL 361
EE D R+++ +G KEEIG MLML+RVDFWLYFFVYFSGATLGLV+ NNL
Sbjct: 287 ---EEGDDHRRENE-------VGVKEEIGVMLMLKRVDFWLYFFVYFSGATLGLVYSNNL 336
Query: 362 GQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGA 421
GQIAESRG SGTSSLVSLSSSFGFFGRL+PSL YF SR A I ALMAPMAGA
Sbjct: 337 GQIAESRGFSGTSSLVSLSSSFGFFGRLMPSLLDYFLSRPA------ACIAALMAPMAGA 390
Query: 422 FMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481
F LLLN TN++LY STAIIGVC+GAITSISV+TTTELFGT+NFSVNHN+VVANIPIGSF+
Sbjct: 391 FFLLLNTTNISLYISTAIIGVCTGAITSISVSTTTELFGTRNFSVNHNVVVANIPIGSFI 450
Query: 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540
FGY AAL+YH+EG GKCMGM CY +TFI+WGS CLFGTFLAL+LYAR RKFYS R
Sbjct: 451 FGYSAALIYHREGDGY--GKCMGMQCYGNTFIIWGSVCLFGTFLALVLYARLRKFYSHR 507
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537626|ref|XP_003537327.1| PREDICTED: uncharacterized protein LOC100793370 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/543 (63%), Positives = 411/543 (75%), Gaps = 33/543 (6%)
Query: 1 MPLNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF 60
MP S LQWLSLVG IWLQ+I GTN+NFPAYSSQLKQLLS+SQ+QLNNLAFASDAGKLF
Sbjct: 1 MP--STTLQWLSLVGIIWLQAIIGTNTNFPAYSSQLKQLLSISQVQLNNLAFASDAGKLF 58
Query: 61 GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICW 120
GW SG+AS+YLPLWLVL IGSTLGL+GYG+QYLF+T+ I LSY H+FLLT LAGNSICW
Sbjct: 59 GWFSGLASIYLPLWLVLFIGSTLGLVGYGVQYLFITNQICSLSYWHVFLLTFLAGNSICW 118
Query: 121 INTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSI 180
INTVCYVVTI+NF DR VAVGIT+SY GLSAK+Y + V+A+ SP+K+A+ +L NS+
Sbjct: 119 INTVCYVVTIRNFFSDRLVAVGITTSYQGLSAKIYANIVDAV---SPHKKARTFLFLNSL 175
Query: 181 FPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLK 240
P++ ++ +P+VREI D V +S R TR GF MF +TI TG YAVL SL K
Sbjct: 176 LPVIVGLIAAPLVREI-DEV----TSPNRYTRVGFAVMFVITISTGTYAVLSSLQFVTSK 230
Query: 241 TLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVE--DKRLINRVKRVHNSTSIEEVSSRLE 298
+ LIGI++ L PL++PL KI+ F E +K I N+TS E V S ++
Sbjct: 231 A--SSLGILIGILLSFLLPLLVPLSMKIKKFQENREKLRIYHYTMEENATSEERVESEVK 288
Query: 299 NGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFL 358
G +EE G EE+G LML+R++FWLYF VYF GAT+GLV+L
Sbjct: 289 EGEVVQEE----------------FGIIEEVGVKLMLRRINFWLYFSVYFFGATVGLVYL 332
Query: 359 NNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418
NNLGQIAESRGCS TSSLVSL+SSFGFFGRL+PSL YF+ R K I PAS+ A M P
Sbjct: 333 NNLGQIAESRGCSNTSSLVSLASSFGFFGRLMPSLMHYFY-RGKCRISRPASLMAAMIPT 391
Query: 419 AGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478
GAF+LLLN++++ALY STA+IGVC+GAITSI+V+TTTELFGTKNFSVNHN+VVANIPIG
Sbjct: 392 TGAFLLLLNKSDIALYISTAVIGVCTGAITSIAVSTTTELFGTKNFSVNHNVVVANIPIG 451
Query: 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYS 538
SF+FGY AAL+YHKEG N H GKCMGM CYR+TFI+WG FC GT LALIL+ARTRKF+S
Sbjct: 452 SFIFGYSAALIYHKEG-NEH-GKCMGMECYRNTFIMWGFFCFLGTLLALILHARTRKFFS 509
Query: 539 QRH 541
+
Sbjct: 510 LKQ 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569475|ref|XP_003552926.1| PREDICTED: uncharacterized protein LOC100800763 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 329/542 (60%), Positives = 418/542 (77%), Gaps = 33/542 (6%)
Query: 1 MPLNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF 60
MP S LQWLSLVG IWLQ+I GTN+NFP YSSQLKQLLS+SQ+QLNNLAFASDAGKLF
Sbjct: 1 MP--STTLQWLSLVGIIWLQAIIGTNTNFPTYSSQLKQLLSISQVQLNNLAFASDAGKLF 58
Query: 61 GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICW 120
GW SG+AS+YLPLWLVLLIGSTLGL+GYG+QYL++T+ IS LSY H+FLLT LAGNSICW
Sbjct: 59 GWFSGLASIYLPLWLVLLIGSTLGLVGYGVQYLYITNQISSLSYWHVFLLTFLAGNSICW 118
Query: 121 INTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSI 180
INTVCYVVTI+NF DR+VAVG+T+SY GLSAK+Y + V+A+ SP+K+A ++ NS+
Sbjct: 119 INTVCYVVTIRNFFSDREVAVGMTTSYQGLSAKIYANIVDAV---SPHKKASAFIFLNSL 175
Query: 181 FPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLK 240
P++ ++ +P+VREI + V +S + TR GF MF +TI TG YAVL SL K
Sbjct: 176 LPVIVGLIAAPLVREIDEEV-----TSPKHTRVGFGVMFVITISTGIYAVLSSLQFVTSK 230
Query: 241 TLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENG 300
+ + L+GI++ LL PL++PL KI+ E+ + R+++ T +E
Sbjct: 231 --VSSLGTLVGILVTLLLPLLVPLSVKIKELQENTEKV----RIYHFT--------MEEN 276
Query: 301 VATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNN 360
++E V++++++ + + +G EE+G LML+R++FWLYFFVYF GAT+GLV+LNN
Sbjct: 277 TTSEERVENEVKEGE---VQEEVGIIEEVGVKLMLRRINFWLYFFVYFFGATVGLVYLNN 333
Query: 361 LGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAG 420
LGQIAESRGCS SSLVSLSSSFGFFGRL+PSL YF+ S+ PAS+ A M PM+G
Sbjct: 334 LGQIAESRGCSNISSLVSLSSSFGFFGRLMPSLMYYFYRISR-----PASMLAAMVPMSG 388
Query: 421 AFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480
AF LLLN+T++ LYTSTA+IGVC+GAITSI+V+TTTELFGT +FSVNHN+VVANIPIGS
Sbjct: 389 AFFLLLNKTDIVLYTSTAVIGVCTGAITSIAVSTTTELFGTNHFSVNHNVVVANIPIGSL 448
Query: 481 LFGYLAALVYHKEGH-NAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQ 539
+FGY AAL+Y KEGH + + KCMGM CYR+TFI+WGSFC GT LALIL+ARTRKF+SQ
Sbjct: 449 IFGYSAALIYRKEGHEHDEHVKCMGMECYRNTFIMWGSFCFLGTLLALILHARTRKFFSQ 508
Query: 540 RH 541
+
Sbjct: 509 KQ 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434394|ref|XP_002270636.1| PREDICTED: uncharacterized protein LOC100263887 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 308/535 (57%), Positives = 399/535 (74%), Gaps = 19/535 (3%)
Query: 8 LQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVA 67
L+WLSLV +WLQ INGTN+NFPAYSS+LKQLLS+SQLQLNNLAFASDAGK+ G ++G A
Sbjct: 6 LRWLSLVAVVWLQFINGTNTNFPAYSSELKQLLSMSQLQLNNLAFASDAGKILGCLAGFA 65
Query: 68 SVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYV 127
+ +LP +VL+IGS LG IGYG+Q+L++++ IS LSY +F L+VLAGNSICWINTVCY+
Sbjct: 66 ADHLPFSVVLIIGSILGFIGYGVQFLYVSNLISSLSYWQVFGLSVLAGNSICWINTVCYI 125
Query: 128 VTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAI-ETSSPNKRAKLYLLFNSIFPLLAC 186
V I+NFP RQ+AVGI++SY+GLSAK++T V+A+ SSP +RA+ YLL N++ PL+ C
Sbjct: 126 VVIRNFPSYRQIAVGISTSYIGLSAKIFTDIVDAVWPHSSPIRRARAYLLLNTVLPLVVC 185
Query: 187 VVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPV 246
V+ +P+ R I + R+ GGF+ MF +TI TG YAV+ SL S L P +
Sbjct: 186 VIAAPIARAI-------DAGKERKKEGGFIVMFVITIATGIYAVISSLG-SVPSGLWPVI 237
Query: 247 KNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSR-LENGVATKE 305
++ +V+ +LAPL IPLGE + VE+ L N ++VH+ E +R L +
Sbjct: 238 NLVVMVVLVILAPLTIPLGESL---VEEWGLSNE-EKVHDFPIKELHDNRELRSVEEGMV 293
Query: 306 EVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA 365
E + + + D + AKEEIG ML R+DFWLYF +YF GATLGLVF NNLGQI+
Sbjct: 294 EEEVVVAAEVCDEVV----AKEEIGLKTMLSRLDFWLYFLIYFLGATLGLVFFNNLGQIS 349
Query: 366 ESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLL 425
ESRG S TSSLVSLSS+FGFFGRL+PSL YFFSRSK+++ PAS+ ALMAP++GAF +L
Sbjct: 350 ESRGYSSTSSLVSLSSAFGFFGRLMPSLQDYFFSRSKYVVSRPASLVALMAPISGAFFIL 409
Query: 426 LNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYL 485
+N TN+ LY STAIIGVC+GAI+SI+V+ T++LFGT NF VNHN++VANIP+GSFLFG+
Sbjct: 410 VNPTNLCLYISTAIIGVCTGAISSIAVSLTSDLFGTTNFGVNHNVLVANIPLGSFLFGFF 469
Query: 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540
AA +YHKE + G+C+G+ CYR TFI WGS L GTFL+L+LYAR RKFY QR
Sbjct: 470 AARLYHKE-GHGGGGRCIGIECYRGTFINWGSLSLLGTFLSLVLYARNRKFYLQR 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115464465|ref|NP_001055832.1| Os05g0475700 [Oryza sativa Japonica Group] gi|113579383|dbj|BAF17746.1| Os05g0475700 [Oryza sativa Japonica Group] gi|215694638|dbj|BAG89829.1| unnamed protein product [Oryza sativa Japonica Group] gi|218196971|gb|EEC79398.1| hypothetical protein OsI_20325 [Oryza sativa Indica Group] gi|222631947|gb|EEE64079.1| hypothetical protein OsJ_18910 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/538 (50%), Positives = 372/538 (69%), Gaps = 19/538 (3%)
Query: 1 MPLNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF 60
MP S+ WLSLVG++WLQ+ING N++FP YSSQLK++ +SQ+QLN LAFASDAGKLF
Sbjct: 1 MPSPSSA-HWLSLVGSVWLQTINGPNADFPVYSSQLKEVKGISQVQLNFLAFASDAGKLF 59
Query: 61 GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICW 120
GW +GVA++YLPLWLV ++G++ GL+GYG+Q+LFL L+Y H+FLLT LAGN ICW
Sbjct: 60 GWFAGVAALYLPLWLVAVVGASFGLVGYGVQFLFLER--PGLAYWHLFLLTSLAGNGICW 117
Query: 121 INTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNK--RAKLYLLFN 178
INTVCY++ IKNFP D +VAV + +SYLGLSAKLYT+ + + + + K+YLL N
Sbjct: 118 INTVCYLLCIKNFPSDSRVAVSLATSYLGLSAKLYTTMAEKMPRGATARYSKEKVYLLLN 177
Query: 179 SIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSK 238
++ P+L +V +P +R + +S RRT F+ MF +T+ TG AV+GS+
Sbjct: 178 AVVPMLVTLVAAPSLRVV-------ELTSHRRTDPAFLAMFAITLATGACAVVGSIGSKS 230
Query: 239 LKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLE 298
+ L +++I + I L P++IP K+R ++ R R RVH+ + +V
Sbjct: 231 IG--LSTSEHMISLYILLALPVLIPAALKVRESMDKLREAKRENRVHDVAAATDVPETAV 288
Query: 299 NGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFL 358
+ + E +++ DD + G G ++E+G + +L+R+DFWLYF Y TLGLVFL
Sbjct: 289 SVLEVAEAAENKEEDDAAAGES---GGQDEVGGIRLLRRLDFWLYFLSYMFSGTLGLVFL 345
Query: 359 NNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418
NNLGQIAESRG S S+LVSLSSSFGFFGRL+P+ Y+ ++S + + AS+ ALMAPM
Sbjct: 346 NNLGQIAESRGLSDPSTLVSLSSSFGFFGRLLPAFLDYYTAKSGYSLSRTASMAALMAPM 405
Query: 419 AGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478
AGAF LLL+ ++ LYTSTA++G C+GAITS++V+ T ELFG KNF VNHN++VANIP+G
Sbjct: 406 AGAFFLLLDPRDMFLYTSTAVVGTCTGAITSVAVSATGELFGRKNFGVNHNVLVANIPVG 465
Query: 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKF 536
S FGYLAA +Y +E A +C G ACYR TF++WG+ C GT L +LYAR+R F
Sbjct: 466 SLCFGYLAAFLYQREARGAS--RCAGAACYRGTFLVWGATCAVGTALCTVLYARSRGF 521
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455122|ref|XP_004145302.1| PREDICTED: uncharacterized protein LOC101220923 [Cucumis sativus] gi|449473552|ref|XP_004153914.1| PREDICTED: uncharacterized protein LOC101218186 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/542 (55%), Positives = 381/542 (70%), Gaps = 27/542 (4%)
Query: 1 MPLNSNIL-QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKL 59
MP +S+I+ QWLSL+G IWLQSINGTN NFP+YSSQLKQ LS+SQLQLNNLAFASDAGKL
Sbjct: 1 MPSSSSIVFQWLSLIGIIWLQSINGTNFNFPSYSSQLKQQLSMSQLQLNNLAFASDAGKL 60
Query: 60 FGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSIC 119
F SG+A+ YLPLWLVL IGS+LGLIGYG+QYLF+T+ SY IF LTVLAGNSIC
Sbjct: 61 FACFSGLAANYLPLWLVLFIGSSLGLIGYGVQYLFITNQFHSPSYWLIFFLTVLAGNSIC 120
Query: 120 WINTVCYVVTIKNFPFD-RQVAVGITSSYLGLSAKLYTSAVNAI-ETSSPNKRAKLYLLF 177
WINTVCY+V I NF RQVAVGI++SY GLSAK+YT V +I +K A+ +LL
Sbjct: 121 WINTVCYMVAITNFKSSSRQVAVGISTSYQGLSAKVYTDIVGSIFSNKHSSKTAETFLLL 180
Query: 178 NSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLS 237
NS+ PL CV+ SP+ R + V+E + + GF +F +TI TG +A + S+
Sbjct: 181 NSVLPLGVCVLVSPLARFV-KIVEE-----QGKLEVGFFVIFVITIATGIFATMTSV--G 232
Query: 238 KLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRL 297
+ +L + L+GI + LV+PL + V+++ + +V++ T +EE +
Sbjct: 233 SVSRMLSALGGLVGI----MVFLVLPLVVVVVEKVKERVEEGKEGKVYHFT-VEEKNDEE 287
Query: 298 ENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVF 357
+ +V+ R DD + A EEIGA M++R++FWLY VY GATLGL F
Sbjct: 288 RMRGENERKVE---RTDDGE-------AMEEIGAKEMVKRINFWLYVGVYLFGATLGLAF 337
Query: 358 LNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAP 417
LNNLGQIAESRG S SSLVSLSSSFGFFGRL+PS+ YF SR+K M P + LM
Sbjct: 338 LNNLGQIAESRGSSSVSSLVSLSSSFGFFGRLLPSILDYFLSRNKFMKSKPGWMVGLMGT 397
Query: 418 MAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477
+ G F LLL+ ++ +L STAII +C+GAITSISV+TTT+LFG NFS+NHNIVVANIP
Sbjct: 398 LCGGFFLLLSPSDTSLCMSTAIIAICTGAITSISVSTTTDLFGATNFSINHNIVVANIPF 457
Query: 478 GSFLFGYLAALVYHKE-GHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKF 536
GSF+FGY+AA +Y K+ GH GKC+G+ CYR+TF++WGSF FGTFLAL+L+ART+ F
Sbjct: 458 GSFIFGYMAAFLYRKQAGHGVDPGKCIGVECYRTTFLIWGSFSSFGTFLALLLFARTKSF 517
Query: 537 YS 538
YS
Sbjct: 518 YS 519
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242088239|ref|XP_002439952.1| hypothetical protein SORBIDRAFT_09g023320 [Sorghum bicolor] gi|241945237|gb|EES18382.1| hypothetical protein SORBIDRAFT_09g023320 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/536 (47%), Positives = 363/536 (67%), Gaps = 17/536 (3%)
Query: 8 LQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVA 67
+ WLSLVG+IWLQ+ING NS+FP YSSQLK++ +SQ+ LN LAFASDAGKLFGW +GVA
Sbjct: 7 VHWLSLVGSIWLQTINGPNSDFPVYSSQLKEIKGISQVGLNFLAFASDAGKLFGWFAGVA 66
Query: 68 SVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYV 127
++YLPLW+V L G+T GL+GYG+Q+LFL + L+Y H+F+LT LAGN ICWINTVCY+
Sbjct: 67 ALYLPLWVVALTGATFGLVGYGVQFLFLDR--AGLAYWHLFVLTSLAGNGICWINTVCYL 124
Query: 128 VTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRA--KLYLLFNSIFPLLA 185
+ I+NFP +VAV + +SYLGLSAK YT+ I ++ + + ++YLL N++ P+
Sbjct: 125 LCIRNFPSHSRVAVSLATSYLGLSAKFYTTMAETIPRAARARYSTTEVYLLLNAVVPMAV 184
Query: 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPP 245
+V +P +R + +E +R T F+ MF +T+ TG A++GS+ + L
Sbjct: 185 TLVAAPSLRMVDLKDKEGR---KRTTEAPFLAMFVITLATGACAIVGSIGAKSIG--LSS 239
Query: 246 VKNLIGIVICLLAPLVIPLGEKIR-CFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATK 304
++++ + L PL+IP+ ++R + + + RVH+ S E +
Sbjct: 240 REHMVSFYVMLALPLLIPVWLRVRESTAKIRETMWPENRVHDHDS-----DGAETTTVSV 294
Query: 305 EEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQI 364
E++ D + ++EE+G + +L+++DFWLYFF Y +LGLVFLNNLGQI
Sbjct: 295 VEIEAAEEDKPEPEVEQSGSSQEEVGGLRLLRQLDFWLYFFSYMFSGSLGLVFLNNLGQI 354
Query: 365 AESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFML 424
A+SRG + S+LVSLSSSFGFFGRL+P+ Y+ ++S + + AS+ LMAPM GAF+L
Sbjct: 355 ADSRGLADASTLVSLSSSFGFFGRLLPAFLDYYTAKSGYSLSRTASMAWLMAPMPGAFLL 414
Query: 425 LLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGY 484
LL+ N+ LY STA++G C+GAITS++ +TT ELFGTKNF VNHN+VVANIP+GS FGY
Sbjct: 415 LLHPKNMFLYASTAVVGTCTGAITSVAASTTNELFGTKNFGVNHNVVVANIPVGSLCFGY 474
Query: 485 LAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540
LAA +Y + H + +C+G ACYR TFILWG+ C GT L +LYAR+R+ + R
Sbjct: 475 LAAFLYQRGAHGGN--RCLGAACYRDTFILWGATCALGTALCTVLYARSRRSAAGR 528
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| TAIR|locus:2065730 | 500 | AT2G30300 "AT2G30300" [Arabido | 0.524 | 0.568 | 0.426 | 4.5e-84 | |
| TAIR|locus:1006230550 | 570 | AT5G45275 "AT5G45275" [Arabido | 0.452 | 0.429 | 0.363 | 7.5e-76 | |
| TAIR|locus:2206169 | 582 | NFD4 "NUCLEAR FUSION DEFECTIVE | 0.942 | 0.876 | 0.335 | 5.1e-74 | |
| TAIR|locus:2140386 | 572 | AT4G19450 "AT4G19450" [Arabido | 0.927 | 0.877 | 0.332 | 3.6e-66 | |
| TAIR|locus:2084183 | 551 | AT3G01630 [Arabidopsis thalian | 0.939 | 0.921 | 0.321 | 8.5e-65 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.975 | 0.931 | 0.292 | 9.6e-57 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.959 | 0.950 | 0.299 | 5.3e-56 | |
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.940 | 0.907 | 0.269 | 1.4e-46 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.452 | 0.423 | 0.277 | 5.2e-35 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.463 | 0.429 | 0.267 | 3.7e-34 |
| TAIR|locus:2065730 AT2G30300 "AT2G30300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 128/300 (42%), Positives = 183/300 (61%)
Query: 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVA 302
+P V L+GI + LLAPL IP+G V K L++ K + ++ + ++
Sbjct: 214 VPAVLVLVGIALFLLAPLAIPIG------VGFKELMSSRK---TQQKVHDLEAPVDKFYF 264
Query: 303 TKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLG 362
+E DH +++ + +G KEE+ + +++DFW+YF +Y G T+GLVF NNLG
Sbjct: 265 VEE--DHTKEEEEFEKAI--IGVKEEVEWTQLWKKLDFWIYFGLYLFGPTVGLVFTNNLG 320
Query: 363 QIAESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAF 422
QIAESRG +PSL YFFSR+K+M SP S+ + M +F
Sbjct: 321 QIAESRGSTATSSLVALSSSFGFFGRLLPSLLDYFFSRNKYMPSSPVSMAGSLVAMVASF 380
Query: 423 MLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLF 482
+LLL ++++ALY TA+IG+ SGA+TS+SVT T ELFGTK+F VNHNIVV +IP+GSF F
Sbjct: 381 LLLLIDSDIALYIGTAMIGIFSGALTSLSVTMTAELFGTKHFGVNHNIVVGSIPLGSFSF 440
Query: 483 GYLAALVYHKEGHNAH--NGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540
G LAA +Y ++G + +GKC GM C+++T + WG C LA +LY R RKFYSQ+
Sbjct: 441 GLLAAKIY-RDGAALYGDDGKCFGMHCFQTTLVFWGMLCSIAALLAAVLYIRNRKFYSQK 499
|
|
| TAIR|locus:1006230550 AT5G45275 "AT5G45275" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 93/256 (36%), Positives = 140/256 (54%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+W+ LV IW+Q+ GTN +F Y A ASD GK+FGW SG+A
Sbjct: 7 KWMILVATIWIQAFTGTNFDFSTYSSNLKSVLGISQVQLNYLAVASDLGKVFGWSSGLAL 66
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
+Y PLW VL + +G +GYG+Q+L +T+ IS L Y +FL +LAG SICW NTVC+V+
Sbjct: 67 LYFPLWTVLFAAAIMGFVGYGVQWLVITNVIS-LPYILVFLCCLLAGLSICWFNTVCFVL 125
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPL-LACV 187
I+NFP +R +A+ +T S+ G+SA LYT A NAI S +LYLL N++ PL ++
Sbjct: 126 CIRNFPANRSLALSLTVSFNGVSAALYTLAYNAINPVS----TELYLLLNALVPLFVSFA 181
Query: 188 VTSPVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVK 247
P++R+ ++ F+ + + ++ G Y +L SK +
Sbjct: 182 ALIPILRQ--PPLEPLPPDGVRRDSLMFLLLNILAVLNGVYLLLFR---SKTSDVTSARL 236
Query: 248 NLIGIVICLLAPLVIP 263
G ++ L+ PL +P
Sbjct: 237 LFGGSILLLILPLCLP 252
|
|
| TAIR|locus:2206169 NFD4 "NUCLEAR FUSION DEFECTIVE 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 181/539 (33%), Positives = 278/539 (51%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+W LV AIW+Q+ GTN +F AY A ASD GK FGW SG+A
Sbjct: 43 KWTVLVAAIWIQASTGTNFDFSAYSSHLKSVLGISQVRLNYLAVASDLGKAFGWSSGIAL 102
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
Y PL +VL + +G +GYG+Q+L +T+ I+ L Y+ +FL +LAG SICW NT C+++
Sbjct: 103 GYFPLSVVLFAAAAMGFVGYGVQWLVITNIIT-LPYSLVFLCCLLAGLSICWFNTACFIL 161
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVV 188
I++FP +R +A+ +T S+ G+SA LY+ A NAI SS N LYLL NS+ PL+
Sbjct: 162 CIRHFPNNRALALSLTVSFNGISAALYSLAFNAINPSSSN----LYLLLNSLVPLVVSFA 217
Query: 189 TS-PVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVK 247
PV+ + + F + + ++T + +L S S +
Sbjct: 218 ALYPVLTKPSLDTTPDYDSRRHDSHV-FTILNVLAVITSFHLLLSSSSTSSARL------ 270
Query: 248 NLIGIVICLLAPLVIPLGEKIRCF---VEDKRLINRVKRVHNSTSIEEVSSRLENGVATK 304
N IG V+ L+ PL PL R + V + RL N + +I+E+ ++ + V++K
Sbjct: 271 NFIGAVVLLVFPLCAPLLVYARDYFLPVINARL-NHESSGYVMLNIDELKNQ-KTSVSSK 328
Query: 305 EEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQI 364
+H + + + G +E L++ R++FWLY+ YF G T+GLV+ NNLGQI
Sbjct: 329 TGYEHMGTAKEGNTVRLG----DEHSFRLLISRLEFWLYYIAYFCGGTIGLVYSNNLGQI 384
Query: 365 AESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFML 424
A+S G + + + R + +I L P+A +
Sbjct: 385 AQSLG-QNSTTLVTIYSSFSFFGRLLSAAPDFMHKRFRLTRTGWFAIALLPTPIAFFLLA 443
Query: 425 LLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGY 484
+ + AL T+TA+IG+ SG I + +V+ T++LFG + VNHNI++ NIPIGS L+GY
Sbjct: 444 VSSSQQTALQTATALIGLSSGFIFAAAVSITSDLFGPNSVGVNHNILITNIPIGSLLYGY 503
Query: 485 LAALVYHKEGHN------AHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFY 537
+AA +Y + + C+G CY TF+ WG + G +L LY RT+ Y
Sbjct: 504 IAASIYEANASPDITPIVSDSIVCIGRDCYFKTFVFWGCLSILGVVSSLSLYIRTKPVY 562
|
|
| TAIR|locus:2140386 AT4G19450 "AT4G19450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 180/542 (33%), Positives = 266/542 (49%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+W+ LV IW+Q+ GTN +F AY A ASD GK+FGW SG+A
Sbjct: 7 KWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGISQVQLNYLAVASDLGKVFGWSSGLAL 66
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
+Y PLW VL + +G +GYG+Q+L +TH IS L Y +FL +LAG SICW NTVC+V+
Sbjct: 67 MYFPLWTVLFAAAFMGFVGYGVQWLVITHFIS-LPYIMVFLCCLLAGLSICWFNTVCFVL 125
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVV 188
I NFP +R +A+ +T S+ G+SA LYT A NAI +SP +LYLL N++ PL+
Sbjct: 126 CISNFPANRSLALSLTVSFNGVSAALYTLAYNAINPTSP----ELYLLLNALIPLIVSFT 181
Query: 189 TS-PVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVL---GSLDLSKLKTLLP 244
P++R+ + F+ + + + G Y +L S DL+ + L
Sbjct: 182 AIIPILRQ--PPFEPLPPDGVRRDSLMFLLLNILAALNGVYLLLFGSNSSDLTSARLLFG 239
Query: 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRL-------INRVK-RVHNSTSIEEVSSR 296
L+ +C+ LVI R RL ++ + +H E +
Sbjct: 240 GAILLLVFPLCIPG-LVIARNWYNRTIHTSFRLEGSGFILVDPDELELHKGMLAHEANRE 298
Query: 297 ----LENGVATKEEVDHQLRDDDSD-GIYHGLGAKEEIGAM-------LMLQRVDFWLYF 344
L + V + ++DSD L ++++ + L+L R DFWLY+
Sbjct: 299 GYQLLSDDVVQNPVKSVAVEEEDSDESCCKKLITRDQLEGLGIEHSLSLLLTRSDFWLYY 358
Query: 345 FVYFSGATLGLVFLNNLGQIAESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHM 404
YF G T+GLV+ NNLGQIA+S G + S + R+K
Sbjct: 359 ITYFCGGTIGLVYSNNLGQIAQSLGQSSNTTTLVTLYSAFSFFGRLLSATPDYI-RAKVY 417
Query: 405 IPSPASIGALMAPMAGAFMLLLNE-TNVALYTSTAIIGVCSGAITSISVTTTTELFGTKN 463
+ + P A LL + T AL TA++G+ SG I + +V+ T+ELFG +
Sbjct: 418 FARTGWLAIALLPTPFALFLLASSGTASALQAGTALMGLSSGFIFAAAVSITSELFGPNS 477
Query: 464 FSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523
VNHNI++ NIPIGS ++G+LAALVY + H K M + + G C + T
Sbjct: 478 VGVNHNILITNIPIGSLIYGFLAALVY--DSHGFTGTKSMTS----ESVVCMGRDCYYLT 531
Query: 524 FL 525
F+
Sbjct: 532 FV 533
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| TAIR|locus:2084183 AT3G01630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 174/542 (32%), Positives = 267/542 (49%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+W LV AIW+Q+ GTN +F AY A ASD GK GW SG A
Sbjct: 23 RWTVLVAAIWIQAFTGTNFDFSAYSSDMKSSMGVSQSRLNYMAVASDLGKALGWSSGFAI 82
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
Y P+ VL + +GL+GYG+Q+L + I L Y+ + + LAG SICW NTV +++
Sbjct: 83 AYFPVSGVLFAAAAMGLVGYGVQWLSIADVID-LPYSLVLVCCSLAGLSICWFNTVSFIL 141
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVV 188
I++F + +A+ + S+ G+SA LYT AI S + + +YLL NS+ PL+ V+
Sbjct: 142 CIRHFKANHSLALSLVVSFNGISAALYTLGHEAISGKS-SASSDIYLLLNSLIPLIVSVL 200
Query: 189 TS-PVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVK 247
PV+ + TR FV + +VT C+ +L L S P
Sbjct: 201 ALWPVLTNPNSS-ETDTTRTHDETRI-FVVFNVLALVT-CFYLL--LPSSGTYLASSPRW 255
Query: 248 NLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSS-RLENGVATKEE 306
+ +G + LL PL +P + I +E + + + +IEE ++++ + EE
Sbjct: 256 HFLGAIFLLLFPLCVPFLDYIHRALES--CFHHHSSGYAAVNIEEPKILKIKSQKSNAEE 313
Query: 307 VDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE 366
Q+R D H LG +++++++FWLY+ YF G T+GLV+ NNLGQIA+
Sbjct: 314 ESDQVRLGDE----HSLG--------MLVRKLEFWLYYVAYFCGGTIGLVYSNNLGQIAQ 361
Query: 367 SRGCXXXXXXXXXXXXXXXXXXX--IPSLFGYFFSRSKHMIPSP-ASIGALMAPMAGAFM 423
S G + S + + K++ + +I L P+A +
Sbjct: 362 SLGQSSSNAKSLVTLFSAFSFLGRLLSSAPDFTRKKLKYLTRTGWFTISLLPTPLAFFIL 421
Query: 424 LLLNETN--VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481
+TN L +TA+IG+ SG + + +V+ T+ELFG + VN NI++ NIPIGS
Sbjct: 422 AYSPKTNQTALLEVATALIGLSSGFVFAAAVSITSELFGRNSVGVNQNILITNIPIGSLF 481
Query: 482 FGYLAALVYHKE---GHN---AHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535
+GY+A VY G A + C+G CY TF+ WG + G +L L+ RTR
Sbjct: 482 YGYMAGSVYDTNASLGRKSVVADSVVCVGRKCYFVTFLFWGCLSVLGFVCSLFLFIRTRP 541
Query: 536 FY 537
Y
Sbjct: 542 VY 543
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| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 162/554 (29%), Positives = 254/554 (45%)
Query: 4 NSNILQWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWI 63
+S+ L+WL V A+W+QSI+G N F Y + A D GK FG +
Sbjct: 11 SSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGIL 70
Query: 64 SGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINT 123
+G+AS L ++LLIGS GL+GYG+Q+L ++ TI + Y + + + GNS W+NT
Sbjct: 71 AGLASDRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNT 130
Query: 124 VCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPL 183
V I+NF +R GI Y+GLS ++T NA+ +S P +L+ S+ P
Sbjct: 131 AVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPAS----FLVLLSVVPF 186
Query: 184 LACVVTSPVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243
C+ +REI F V +V Y L S D+ +KT
Sbjct: 187 AVCLTAVFFLREIPP---STTFAEDNEESKYFAVFNIVAVVVAVY--LQSYDIIGIKTGA 241
Query: 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLIN-RVKR--VHNSTSIEEVSSRLENG 300
+ ++I L +P+ +P IR V D++ + R+ + + + IE + +
Sbjct: 242 FSIAFASILLILLASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGAA 301
Query: 301 VATKEEVDHQLR-----DDDSDGIYHGLGAK-----EEIGAMLMLQRVDFWLYFFVYFSG 350
A E+ L+ ++++ G K EE M + VDFW+ F + G
Sbjct: 302 AAADNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCG 361
Query: 351 ATLGLVFLNNLGQIAESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHMIPSPAS 410
GL +NN+GQI + G + F + K P P
Sbjct: 362 VGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK-KAGTPRPLW 420
Query: 411 IGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNI 470
A MA ++L+ +LY + ++GVC G +I+V T +ELFG K + + +NI
Sbjct: 421 NAAAQIIMAVGYLLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNI 480
Query: 471 VVANIPIGSFLF-GYLAALVYHKEGHNAHNG--KCMGMACYRSTFILWGSFCLFGTFLAL 527
++ N+P+GSFLF G LA L+Y E G C+G C+R FI+ + G L L
Sbjct: 481 LILNMPLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDL 540
Query: 528 ILYARTRKFYSQRH 541
+L RT+ Y++ H
Sbjct: 541 LLAYRTKGIYAKIH 554
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 163/544 (29%), Positives = 250/544 (45%)
Query: 4 NSNILQWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWI 63
+S+ L+WL V A+W+QSI+G N F Y + A D GK FG +
Sbjct: 9 SSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKDVGKAFGIL 68
Query: 64 SGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINT 123
+G+AS LP ++LLIG GL+GYG+Q+L ++ TI + Y + + + GNS W+NT
Sbjct: 69 AGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGGNSTTWMNT 128
Query: 124 VCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPL 183
V I+NF +R GI Y+GLS ++T A+ ++ P +L+ ++ P
Sbjct: 129 AVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPAS----FLVLLAVVPF 184
Query: 184 LACVVTSPVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243
C+ +REI TR F V +V Y L S D+ +KT +
Sbjct: 185 AVCLTAVFFLREIPP--ASSAAEENEETRY-FTIFNIVAVVVAVY--LQSYDIIGIKTGV 239
Query: 244 PPVKNLIGIVICLLA-PLVIPLGEKIRC--FVEDKRLINRVKRVHNSTSIEEVSSRLENG 300
V I++ LLA P+ IP I+ + E L R++ + I +
Sbjct: 240 FSVA-FASILLFLLASPIAIPFHSFIKSLNYGEQDDLEGRIQEPLLRSEIAAAEKEVIVV 298
Query: 301 VATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNN 360
A E + + R G H + + A+L VDFW+ F + G GL +NN
Sbjct: 299 AAVAAEEEEKKRKKPVLGEDHTI-----MEAVLT---VDFWVLFVSFLCGVGTGLAVMNN 350
Query: 361 LGQIAESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHMIPSPASIGALMAPMAG 420
+GQI + G + +F + K P P A MA
Sbjct: 351 MGQIGLALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK-KAGTPRPLWNAASQILMAV 409
Query: 421 AFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480
++L+ +LY + ++GVC G +I+V T +ELFG K + + +NI+V N+P+GSF
Sbjct: 410 GYILMALAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSF 469
Query: 481 LF-GYLAALVYHKEGHNAHNG--KCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFY 537
LF G LA +Y E G C+G CYR FI+ + G L L+L RT++ Y
Sbjct: 470 LFSGLLAGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIY 529
Query: 538 SQRH 541
++ H
Sbjct: 530 AKIH 533
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| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 148/549 (26%), Positives = 240/549 (43%)
Query: 10 WLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVASV 69
W+ L A W+Q G+ S FP Y A D G+ G + G AS
Sbjct: 14 WVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLLPGYASN 73
Query: 70 YLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVT 129
LP W +LLIG++ +G+G+ +L ++ + L + +F+ LA NS W T V
Sbjct: 74 KLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGTASLVTN 133
Query: 130 IKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSI-FPLLACVV 188
++NFP R G+ Y+G+S +T + + S A LLF ++ P++ V
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHS----AMDLLLFLTVGIPVICLTV 189
Query: 189 T---SPVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPP 245
P + G+ E F F+ +I+ Y V+ ++ LS++ +LP
Sbjct: 190 MYFIRPCIPATGEDPSEPMY---------FAFLLVTSILFAAYLVVTTV-LSEV-FILPS 238
Query: 246 VKN--LIGI-VICLLAPLVIPLGEKI-RCFVEDKRL---INRVKR--VHNSTSIEEVSSR 296
+ L+ I V+ LL+PL +P+ + R + L N K H + +S
Sbjct: 239 ILKYVLVAIMVLLLLSPLAVPIKMTLFRSNAKSSPLGSSDNLAKEEGTHEEPLLTPSTSA 298
Query: 297 LENGVATK--EEVDHQLRDDDSDGIYHGL-----GAKEEIGAMLMLQRVDFWLYFFVYFS 349
G + +E D ++ +++G G + G + + + DFWL +FVYF
Sbjct: 299 SNLGPIFEGDDESDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFV--KADFWLLWFVYFL 356
Query: 350 GATLGLVFLNNLGQIAESRGCXXXXXXXXXXXXXXXXXXXIPSLFGYFFSRSKHMIPSPA 409
G G+ NNL QI + G F RS+ +P
Sbjct: 357 GMGSGVTVSNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSR-TLPRTL 415
Query: 410 SIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHN 469
+GA M F+L + +Y +TA+IG+C G +S+ T +ELFG ++F +N N
Sbjct: 416 WMGAAQLVMVFTFLLFAMAIDHTIYVATALIGICMG-FQFLSIATISELFGLRHFGINFN 474
Query: 470 IVVANIPIGSFLFG-YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528
++ P+G+ +F LA +Y KE C+G C+R TF++ C GT L++I
Sbjct: 475 FILLGNPLGATIFSAILAGYIYDKEADKQGKMTCIGPDCFRVTFLVLAGVCGLGTLLSII 534
Query: 529 LYARTRKFY 537
L R R Y
Sbjct: 535 LTVRIRPVY 543
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| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 72/259 (27%), Positives = 114/259 (44%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+WL V A+W+QS G F + A D G G+I+G S
Sbjct: 16 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSVGFIAGTLS 75
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
LPLW LL+G+ LIGYG +L +T L + +L + N + NT V
Sbjct: 76 EILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETYFNTGALVS 135
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVV 188
++NFP R VGI + GL + + I +S+P A L L+ ++ P + V
Sbjct: 136 GVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNP---ASLILMV-AVTPAVVVVC 191
Query: 189 TSPVVREIGDHVQEXXXXXXXXTRGG-FVFMFFVTIVTGCY--AVLGSLDLSKLKTLLPP 245
+R +G H Q T G F F++ V ++ Y +V+ DL + +
Sbjct: 192 LMFFIRPVGGHKQ------IRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245
Query: 246 VKNLIGIVICLLAPLVIPL 264
V ++ VI L+ P+++P+
Sbjct: 246 VFTIVLFVI-LVVPILVPI 263
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 71/265 (26%), Positives = 107/265 (40%)
Query: 9 QWLSLVGAIWLQSINGTNSNFPAYXXXXXXXXXXXXXXXXXXAFASDAGKLFGWISGVAS 68
+WL V A+W+QS G F + A D G G+++G S
Sbjct: 16 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLS 75
Query: 69 VYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVV 128
LPLW LL+GS L+GYG +L +T L + +L + N + NT V
Sbjct: 76 EILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVS 135
Query: 129 TIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVV 188
++NFP R VGI + GL + + I +S RA L + ++ P + V
Sbjct: 136 GVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSD---RASLIFMV-AVAPSVVVVP 191
Query: 189 TSPVVREIGDHVQEXXXXXXXXTRGGFVFMFFVTIVTGCY--AVLGSLDLSKLKTLLPPV 246
+R +G H Q F ++ V I+ Y AV+ D L +
Sbjct: 192 LMFFIRPVGGHRQIRSSDATS-----FTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIA 246
Query: 247 KNLIGIVICLLAPLVIPLGEKIRCF 271
++ I LL P+ IP+ CF
Sbjct: 247 FTVVLFAI-LLVPIFIPIATS--CF 268
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_XIII000459 | hypothetical protein (511 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 1e-83 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 9e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-05 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 1e-83
Identities = 107/257 (41%), Positives = 141/257 (54%), Gaps = 12/257 (4%)
Query: 10 WLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASV 69
WL LV AIW+QS G N +F YSS LK L SQ+QLN L A D GK FGW+SG+A+
Sbjct: 2 WLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAAE 61
Query: 70 YLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVT 129
YLP W+VLL+G+ +G +GYG+Q+L +T I L Y + L LAGNSICW NT V
Sbjct: 62 YLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVTC 121
Query: 130 IKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVT 189
I+NFP R V +GI Y GLSA +YT AI + A LL N++ PL+ +V
Sbjct: 122 IRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGND----ASSLLLLNALVPLVVSLVA 177
Query: 190 SPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNL 249
+R V E S S F+ +++ Y V S+ LSK L
Sbjct: 178 LYFIRPCPGKVGEQRSESVV-----FLVFNVLSVALAVYLVAMSI-LSKSFDLSSAEYYA 231
Query: 250 IGIVIC--LLAPLVIPL 264
+G ++ LL PL +P+
Sbjct: 232 LGAIMVLLLLVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 6/166 (3%)
Query: 334 MLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSGTSS--LVSLSSSFGFFGRLIP 391
ML+ FW+ + +F A GL+ + +S G S VS+SS F GR
Sbjct: 201 MLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFL 260
Query: 392 SLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSIS 451
R K M MA M ML +V + A++ G S+
Sbjct: 261 GALSDKIGRQKTMSIVFGISAVGMAAMLFIPML----NDVLFLATVALVFFTWGGTISLF 316
Query: 452 VTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497
+ +++FG N + N+ + + G +A+ + G
Sbjct: 317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEY 362
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This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 15/201 (7%)
Query: 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRL 389
+L+ L +F + L L + + L S FG G +
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGG-I 225
Query: 390 IPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITS 449
+ +L G S IG L+A G +L L + L + ++G G
Sbjct: 226 LGALLGGLLSDRLGRRRLLLLIGLLLA-ALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284
Query: 450 ISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYR 509
+T +EL + + +G L LA L+ G Y
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-------------YG 331
Query: 510 STFILWGSFCLFGTFLALILY 530
F++ + L L L+L
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.84 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.8 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.8 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.78 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.76 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.76 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.76 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.74 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.72 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.71 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.69 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.69 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.67 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.67 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.65 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.63 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.63 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.63 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.62 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.6 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.6 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.59 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.59 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.58 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.56 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.54 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.53 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.53 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.52 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.52 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.5 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.5 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.5 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.48 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.48 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.47 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.46 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.45 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.45 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.44 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.43 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.39 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.38 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.37 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.34 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.34 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.31 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.29 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.29 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.29 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.28 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.27 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.26 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.26 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.23 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.19 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.14 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.05 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.94 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.77 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.75 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.71 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.69 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.68 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.63 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.62 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.62 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.6 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.59 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.55 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.51 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.5 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.49 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.48 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.47 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.47 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.46 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.44 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.43 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.42 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.42 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.41 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.41 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.41 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.41 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.4 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.38 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.36 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.36 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.35 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.33 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.32 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.28 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.28 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.26 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.25 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.25 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.25 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.25 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.23 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.22 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.22 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.18 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.17 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.17 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.17 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.16 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.15 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.15 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.14 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.11 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.11 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.1 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.05 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.04 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.03 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.93 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.9 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.88 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.86 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.84 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.83 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.78 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.78 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.76 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.76 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.75 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.75 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.75 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.67 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 97.66 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.66 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.65 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.65 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.62 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 97.56 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.54 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.53 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.52 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.52 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.44 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.44 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.41 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.41 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.36 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.23 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.22 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.17 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.12 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.12 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.1 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.07 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.06 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.06 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 96.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 96.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 96.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 96.88 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.76 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 96.71 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 96.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.65 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 96.64 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 96.44 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.35 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 96.25 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.12 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.1 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 95.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.03 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 94.51 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 94.2 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 94.06 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 93.62 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.36 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 93.34 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 93.3 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 93.26 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 92.98 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 92.6 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.17 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 90.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 90.77 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 90.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 90.01 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 89.91 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 89.25 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 89.08 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 89.08 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 88.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.05 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 87.07 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 86.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 86.65 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 86.59 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 85.6 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 85.11 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 84.97 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 84.92 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 82.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.67 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-83 Score=708.65 Aligned_cols=508 Identities=15% Similarity=0.156 Sum_probs=417.1
Q ss_pred cchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhcccchhhhhhccccchHHHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
..+||+++++++|+|.++|++|.|++|++++|+.+|+||+|+++++..+.....+++++|.++|++|||.++++|+++..
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998885533333445599999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhcC
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETS 165 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~~ 165 (541)
+||++.|+++++.+. .++|++|++.++.|+|++++|+++.+++++|||++||+++|+.+++.|++++++++++.+++.
T Consensus 103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~- 180 (591)
T PTZ00207 103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS- 180 (591)
T ss_pred HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999998874 589999999999999999999999999999999999999999999999999999999999983
Q ss_pred CCCCcccchhhhhchhhhHhHhhccceeeeecCCCc-cccc-ccccccCC-----------------cchhhhHHHHHHH
Q 009176 166 SPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQ-ESSS-SSRRRTRG-----------------GFVFMFFVTIVTG 226 (541)
Q Consensus 166 ~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~-~~~~-~~~~~~~~-----------------~f~~~~~~~~~~a 226 (541)
+|.+.+++++++.+.+++++.+.++|.. |... .++. ..+++|+. +|...++++++++
T Consensus 181 ---~~~~~~fl~l~vl~~vv~ll~~~~vr~p-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~ 256 (591)
T PTZ00207 181 ---DNTSAYFFFLMSFALVVGILAIVFMRLP-PFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILI 256 (591)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHhheeCC-cchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHH
Confidence 6888999999999999999999999987 4322 1111 11122222 6888889999999
Q ss_pred HHHHHhhccccc-ccCCCCchhHHHHHH-HHhhhc-cccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCC
Q 009176 227 CYAVLGSLDLSK-LKTLLPPVKNLIGIV-ICLLAP-LVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVAT 303 (541)
Q Consensus 227 ~yl~~~~~~~~~-~~~~~~~~~~~~~~~-~ll~~P-l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (541)
+|+++.++.++. +.++.....++++++ ++|+.| +++|++.. + ..+++ +++ +.+.++.+ +++++
T Consensus 257 ~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~-~----~~~~~-~~~---~~~~~~~~-----~~~~~ 322 (591)
T PTZ00207 257 VFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTF-D----GKRPH-DDS---DGKAKEHV-----EAGEE 322 (591)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHh-c----cCCcC-CCc---cccccccc-----ccccc
Confidence 999999987653 333344455666666 788899 88998752 1 11110 000 00000000 00000
Q ss_pred ccccccccCCCCCCCcc-CCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhh-cC-Ccc--cc-hh
Q 009176 304 KEEVDHQLRDDDSDGIY-HGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESR-GC-SGT--SS-LV 377 (541)
Q Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~sl-g~-~~~--~~-~V 377 (541)
..+++ ++...++.+ ++|+++| |.+|++++.|||++|+.++||.|+|++++||++||+|++ |+ .+. +. +|
T Consensus 323 ~~~~~---~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~v 397 (591)
T PTZ00207 323 VSAAE---DKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLT 397 (591)
T ss_pred ccccc---cccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeeh
Confidence 00000 000000111 2345555 999999999999999999999999999999999999999 88 444 44 89
Q ss_pred hhhhhcccccccccccchhhhcccCC--CCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHH
Q 009176 378 SLSSSFGFFGRLIPSLFGYFFSRSKH--MIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTT 454 (541)
Q Consensus 378 sl~Si~N~~GRl~~G~~s~~~~~~~~--~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~i 454 (541)
|++|+|||+||+++|++|.+..|++. ++||+.++++.++ |++++++++...+ ..||+.++++|+|||++|+++|++
T Consensus 398 sL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i 476 (591)
T PTZ00207 398 VLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALV 476 (591)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHH
Confidence 99999999999999999955533321 2899999999888 8888888887777 789999999999999999999999
Q ss_pred hhhhcCCCcccchhhhhhhhhhhhHHHH-HHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 455 TTELFGTKNFSVNHNIVVANIPIGSFLF-GYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 455 vse~FG~k~fg~nyg~~~~a~~~Gs~l~-~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
++|+|| ||+|++||+++++.|+|++++ ..++|.+||+|+.|+++.+|.|++||+.+|+|++++|++|+++++++++|+
T Consensus 477 ~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 477 TRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred HHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 999999 999999999999999999999 689999999999987777999999999999999999999999999999999
Q ss_pred hcccccc
Q 009176 534 RKFYSQR 540 (541)
Q Consensus 534 r~~Y~~~ 540 (541)
||||++.
T Consensus 556 r~~y~~~ 562 (591)
T PTZ00207 556 RRLCLKA 562 (591)
T ss_pred HHHHHHH
Confidence 9999953
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=517.86 Aligned_cols=249 Identities=35% Similarity=0.613 Sum_probs=232.3
Q ss_pred hHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhcccchhhhhhccccchHHHHHHHHHHHHHHH
Q 009176 9 QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYLPLWLVLLIGSTLGLIGY 88 (541)
Q Consensus 9 rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~G~~~Gll~d~~pp~~vlliGa~~~~~GY 88 (541)
||++|++++|+|+++||+|.||+||||||+++||||+|+|+|++++|+|+++|+++|+++|++|||+++++|++++++||
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCC
Q 009176 89 GLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPN 168 (541)
Q Consensus 89 ~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~ 168 (541)
+++|++++++++++|+|+||++++++|||++|+|||+++||+||||+|||+|+|++|+++||||+||||+|+++| +
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f----~ 156 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFF----G 156 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHc----C
Confidence 999999999998899999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred CcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhccccc-ccCCCCchh
Q 009176 169 KRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSK-LKTLLPPVK 247 (541)
Q Consensus 169 ~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~-~~~~~~~~~ 247 (541)
+|+++|++|+|+.|.++++++++++|++ |+.++ ..++++|+++|...+.+++++|+|+++.++.++. +.++.....
T Consensus 157 ~~~~~fll~la~~~~~v~l~~~~~vr~~-~~~~~--~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~ 233 (250)
T PF06813_consen 157 DDPSSFLLFLAVLPAVVCLVAMFFVRPV-PPSPS--RTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVI 233 (250)
T ss_pred CChHHHHHHHHHHHHHHHHHHhhheecc-CCccc--cccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHH
Confidence 8999999999999999999999999999 54321 1245677788999999999999999999987765 445555666
Q ss_pred HHHHHHHHhhhcccccc
Q 009176 248 NLIGIVICLLAPLVIPL 264 (541)
Q Consensus 248 ~~~~~~~ll~~Pl~ip~ 264 (541)
..++++++|++|++||+
T Consensus 234 ~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 234 FAVILLLLLLLPLAIPV 250 (250)
T ss_pred HHHHHHHHHHhhhhccC
Confidence 78888999999999985
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=213.71 Aligned_cols=370 Identities=18% Similarity=0.224 Sum_probs=261.9
Q ss_pred hhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLI 86 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~ 86 (541)
+||+.+++.+....+.|..|.++.+.|.+++.+|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 46889999999999999999999999999999999999999999999999966 89999999999999999999999888
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhcCC
Q 009176 87 GYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSS 166 (541)
Q Consensus 87 GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~~~ 166 (541)
|+...-.+ .++|++.+..++.|.+......++.....+.||++||++.|+.-...++++.+...+...+..
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 151 (377)
T TIGR00890 81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVIN-- 151 (377)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHh--
Confidence 88554332 246777777778888887766677777778999999999999888888877665544443320
Q ss_pred CCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCch
Q 009176 167 PNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPV 246 (541)
Q Consensus 167 ~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~ 246 (541)
..+-....+..++.+.+..++...++|..
T Consensus 152 -~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 180 (377)
T TIGR00890 152 -LEGVPAAFIYMGIIFLLVIVLGAFLIGYP-------------------------------------------------- 180 (377)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHheecC--------------------------------------------------
Confidence 00000000011111111000000000000
Q ss_pred hHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCcc
Q 009176 247 KNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAK 326 (541)
Q Consensus 247 ~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (541)
+++. + ++ +++.. .
T Consensus 181 ----------------------------------~~~~--------------~-~~---------~~~~~---------~ 193 (377)
T TIGR00890 181 ----------------------------------PGQL--------------I-KT---------NIEVS---------V 193 (377)
T ss_pred ----------------------------------chhc--------------c-cc---------Ccccc---------h
Confidence 0000 0 00 00000 0
Q ss_pred ccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCC
Q 009176 327 EEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHM 404 (541)
Q Consensus 327 ~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~ 404 (541)
++.+.++.++++++|++++.+++.........+...+..+++|.++ .....++.++.+.+||+..|++.|..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------ 267 (377)
T TIGR00890 194 KDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI------ 267 (377)
T ss_pred hhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 1234567889999999998888776665555566666777777754 45678888999999999999884432
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhccc--c-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHH
Q 009176 405 IPSPASIGALMAPMAGAFMLLLNETN--V-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 405 ~~R~~~l~~~~~~~~~~~ll~~~~~~--~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l 481 (541)
+|...+....+++.++.+++....+ . .++....+.|+++|..+++.|+.++|.++.|+.++.+|+......+|..+
T Consensus 268 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 346 (377)
T TIGR00890 268 -GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIF 346 (377)
T ss_pred -hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH
Confidence 2333333444455555444443332 2 23345678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHH
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTF 524 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~ 524 (541)
++.++|.++|..+ |+..|.+.+++++++++
T Consensus 347 ~~~~~g~l~~~~g-------------~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 347 GGLIASHALTEIG-------------FEYTFIVTGAFALTSLA 376 (377)
T ss_pred HHHHHHHHHhhhc-------------hhhHHHHHHHHHHHhcc
Confidence 9999999998754 79999999888777653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=228.54 Aligned_cols=426 Identities=18% Similarity=0.197 Sum_probs=308.0
Q ss_pred hHHHHHHHHHHH-HhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHH
Q 009176 9 QWLSLVGAIWLQ-SINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLI 86 (541)
Q Consensus 9 rw~~l~as~~v~-~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~ 86 (541)
-|++.+++.++. .+-|-.|.|+++=+++++.++-+-+|...|+...---.++ |++++.++|++|.|.+.++|++..+.
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 499999998886 7889999999999999999999999977665554444455 99999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchHHHHHH-HHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhcC
Q 009176 87 GYGLQYLFLTHTISHLSYAHIFL-LTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETS 165 (541)
Q Consensus 87 GY~~~~l~~~~~i~~~~~w~l~~-~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~~ 165 (541)
|+..-..+- ++|++.+ +-++.|.|.++..+.+++.--+-|+++|+.|+|+..+--|+...+|+.+-..++.
T Consensus 124 g~~lssF~~-------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~- 195 (509)
T KOG2504|consen 124 GLLLSSFAT-------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLS- 195 (509)
T ss_pred HHHHHHHHh-------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHH-
Confidence 987755443 3577655 6788899999999999999889999999999999999999999999999998873
Q ss_pred CCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCc
Q 009176 166 SPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPP 245 (541)
Q Consensus 166 ~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~ 245 (541)
.-+....++.+.++. +.++++....||. +...+ +. .+++. . + ...
T Consensus 196 -~~G~r~~~l~~~~~~--l~~~~~~~~~rp~-~~~~~----~~-~~~~~-~-------------------~-~~~----- 240 (509)
T KOG2504|consen 196 -KYGWRGALLIFGGIS--LNVLVAGALLRPL-SPPKK----PN-EEKDL-R-------------------N-SAA----- 240 (509)
T ss_pred -HhCcHHHHHHHHHHH--HHHHHHHHHcCCC-CcCCC----ch-hhhhh-c-------------------c-ccc-----
Confidence 124566666666654 5567777788887 33311 11 00000 0 0 000
Q ss_pred hhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC-C
Q 009176 246 VKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL-G 324 (541)
Q Consensus 246 ~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 324 (541)
+ .+......+...+++. .+..+..+ ++.+.. +...++.+..+ +
T Consensus 241 ---------------------~-~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~ 284 (509)
T KOG2504|consen 241 ---------------------S-VESTPKPVELRISERD-------SGLKKLSL--SNLATL-----KRGPDKWRNSPLQ 284 (509)
T ss_pred ---------------------c-ccccccccccccccCC-------CCCCcccc--cchhhh-----hhCCccccccchh
Confidence 0 0000000000000000 00000000 000000 00000000000 0
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccC
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSK 402 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~ 402 (541)
+..+.--+++++++.||++.+...+....=....-.+...+++.|++ +++..+|++++.|.+||++.|++.|..
T Consensus 285 ~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~---- 360 (509)
T KOG2504|consen 285 AFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP---- 360 (509)
T ss_pred hhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc----
Confidence 11112236899999999998877776555555555677778888885 678999999999999999999996652
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHH
Q 009176 403 HMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 403 ~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l 481 (541)
..++.+...++++...++.+..+...+ ..+...+++.|+|.|...++.|.++.|+.|+++++.-||++.+..+++.++
T Consensus 361 -~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~ 439 (509)
T KOG2504|consen 361 -GIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALV 439 (509)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHc
Confidence 234556666666666666666666655 468889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+|+++|++||.+++ |..+|+..+...+++.++.++..
T Consensus 440 gpPiag~~~d~tg~------------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 440 GPPIAGLLYDITGN------------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CcccceeeeeccCC------------eeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999 99999999999888887777665
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-20 Score=198.99 Aligned_cols=406 Identities=14% Similarity=0.094 Sum_probs=257.9
Q ss_pred hhHHHHHHHHHHHHh-cCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSI-NGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~-~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
.||..++++++.+.. -+..+.++.|-+++++.+|+|+++...+.....++..+ +++.|.+.||+++|.++++|.+...
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 95 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS 95 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence 479888888887753 45567789999999999999999999988887777654 8899999999999999998887777
Q ss_pred HHHHHHHHHhhhccccchHHHHHHH-HHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLL-TVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~-~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
++..+.- ... .+|++.+. -++.|.+.+.....+.....+.||++||++.|+.....++++.+...+...+..
T Consensus 96 ~~~~~~~--~~~-----~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 96 LGMILAS--FSS-----NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred HHHHHHH--Hhh-----hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7765542 222 34655443 245576666443344444458999999999999998888888877666555441
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCC
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLP 244 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~ 244 (541)
. .+=...|+. .+. ..+++++...+.|+. +...+ .+++++
T Consensus 169 -~-~gwr~~f~~-~~~-~~~~~~v~~~~~~~~-~~~~~----~~~~~~-------------------------------- 207 (455)
T TIGR00892 169 -S-FGWRGSFLI-LGG-LLLHCCVCGALMRPV-GPSQR----VSKSKS-------------------------------- 207 (455)
T ss_pred -H-hChHHHHHH-HHH-HHHHHHHHHHHhCCC-Ccccc----cccccc--------------------------------
Confidence 0 000111111 111 112222222233322 11000 000000
Q ss_pred chhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCC
Q 009176 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLG 324 (541)
Q Consensus 245 ~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+ +. . +++...+ +.... ... +
T Consensus 208 --------------------------------~---~~-~----------------~~~~~~~----~~~~~-~~~---~ 227 (455)
T TIGR00892 208 --------------------------------K---EG-L----------------PPDGSTK----KLSKK-STA---E 227 (455)
T ss_pred --------------------------------c---cc-C----------------CCCCccc----ccccc-chh---h
Confidence 0 00 0 0000000 00000 000 0
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccC
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSK 402 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~ 402 (541)
...+.-..+.+++++||.+.+..++....-.+....+.+..++.|++ +.+...++.++.+.++|.++|.+.|.. +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~---~ 304 (455)
T TIGR00892 228 KINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK---W 304 (455)
T ss_pred hhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c
Confidence 00111113688999999887766654443334444566677777875 456788899999999999999885421 1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHH
Q 009176 403 HMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 403 ~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l 481 (541)
++..|...+........++.++.....+ ..+++...+.|+++|..+...++++.|.++.++.++.+|++.+...+|..+
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i 384 (455)
T TIGR00892 305 IRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLI 384 (455)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHc
Confidence 0112222222222323333333333333 346777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH----HHHHHhhhhcc
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL----ALILYARTRKF 536 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l----sl~l~~r~r~~ 536 (541)
+|.++|.++|..++ |+..|++.+++++++.+. .++.++++||.
T Consensus 385 gp~i~G~l~~~~g~------------~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~ 431 (455)
T TIGR00892 385 GPPLAGRLVDATKN------------YKYIFYASGSIVVSAGLFLAIGNYINYRLLAKE 431 (455)
T ss_pred cccceeeeehhcCC------------cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877 899999998887777663 34446666653
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=183.55 Aligned_cols=386 Identities=13% Similarity=0.050 Sum_probs=245.3
Q ss_pred CCccchhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHH
Q 009176 3 LNSNILQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIG 80 (541)
Q Consensus 3 ~~~~~~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliG 80 (541)
.++++.+|..+..+.++....| ..+.++...|++++.+|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (406)
T PRK11551 7 SASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS 86 (406)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 4667899999998888887655 356778888999999999999999999999999866 79999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHH
Q 009176 81 STLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAV 159 (541)
Q Consensus 81 a~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~ 159 (541)
.+...++.....+. .++|.+.+..++.|.+.+...++......+.||+ +||++.|+.-....+++.+-..+.
T Consensus 87 ~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 87 VALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred HHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776554432 2457777778888888877666665666688975 799999987665555554433332
Q ss_pred HHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccc
Q 009176 160 NAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKL 239 (541)
Q Consensus 160 ~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~ 239 (541)
..... ..+-.......+..+.+..
T Consensus 160 ~~~~~---~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 183 (406)
T PRK11551 160 VLAAG---DAAWRHIFYVGGVGPLLLV----------------------------------------------------- 183 (406)
T ss_pred HHHcc---ccCHHHHHHHHHHHHHHHH-----------------------------------------------------
Confidence 11110 0000000000000000000
Q ss_pred cCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCc
Q 009176 240 KTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGI 319 (541)
Q Consensus 240 ~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (541)
.+..+..| + .++.. +++ + + ++++ +...+..
T Consensus 184 ------------~~~~~~l~----------~---~~~~~--~~~--~------------~-~~~~--------~~~~~~~ 213 (406)
T PRK11551 184 ------------PLLMRWLP----------E---SRAFA--QAA--G------------A-GKQR--------APVLRAL 213 (406)
T ss_pred ------------HHHHHhCC----------C---ChhHH--hcc--C------------c-chhh--------hhhHHHH
Confidence 00000111 0 00000 000 0 0 0000 0000000
Q ss_pred cCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhh
Q 009176 320 YHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYF 397 (541)
Q Consensus 320 ~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~ 397 (541)
...+ +....+.+++.+++....-..+.+.+.++.++.|.+ +.....++..+.+.+||+..|.+.|.
T Consensus 214 ---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 281 (406)
T PRK11551 214 ---------FGEG---RATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR 281 (406)
T ss_pred ---------hhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 112233333333333222223444566777777775 45677788888999999999988443
Q ss_pred hcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhh
Q 009176 398 FSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIP 476 (541)
Q Consensus 398 ~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~ 476 (541)
. +|...+....+.++++.+++....+ ..+++...+.|++.++..+..++++.|.+..++.|+..|+..+...
T Consensus 282 ~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 354 (406)
T PRK11551 282 L-------RPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGR 354 (406)
T ss_pred H-------hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhh
Confidence 2 3333333333334444444433333 3466677888999988899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 477 IGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 477 ~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
+|+.++|.++|.++|..+. |...|.+...+++++.++++.+.+|
T Consensus 355 ~g~~~g~~~~g~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRS------------TVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred HHHHHHhhhHhhhhccCCc------------hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998766 7888888888888877777766443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=177.61 Aligned_cols=381 Identities=15% Similarity=0.114 Sum_probs=246.9
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
..+.++...|.+++.+|+|.+|...+.....++..+ .++.|.+.||+|+|.++.++.+...++......+- +
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-------~ 81 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-------A 81 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-------C
Confidence 346778888999999999999999999999999866 89999999999999999999888888776655432 4
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhh
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFP 182 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p 182 (541)
+|.+.+..++.|.+.+...++......+.+|+ +||++.|+.-...++++.+-..+...+.. ..+-.....+.+...
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~ 158 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWAFIIEGVLG 158 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHHHHHHHHHH
Confidence 67788888888998887777777777789986 79999999999998888887777665542 112222222222222
Q ss_pred hHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccc
Q 009176 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVI 262 (541)
Q Consensus 183 ~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~i 262 (541)
.+..++...+.+.. ++ +++.++
T Consensus 159 ~~~~~~~~~~~~~~--~~------~~~~~~-------------------------------------------------- 180 (399)
T TIGR00893 159 IIWGVLWLKFIPDP--PQ------KAKWLT-------------------------------------------------- 180 (399)
T ss_pred HHHHHHhhheecCC--CC------ccccCC--------------------------------------------------
Confidence 22222222222211 10 000000
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
+ +.+++. .++. .++ .+ ++++. ..+..+.++.++++++|.
T Consensus 181 -------~--~~~~~~--~~~~------------~~~-~~---------~~~~~--------~~~~~~~~~~~~~~~~~~ 219 (399)
T TIGR00893 181 -------E--EEKYIV--VGGL------------LAE-QQ---------GKGPS--------TPKKYQIKELLKDRRVWG 219 (399)
T ss_pred -------H--HHHhhc--chhh------------ccc-cc---------ccccc--------CCCccchHHHhcCHHHHH
Confidence 0 000000 0000 000 00 00000 011234678899999999
Q ss_pred HHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHH----HHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASI----GALM 415 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l----~~~~ 415 (541)
+++..++......++.....+..+ ..|.+ +.....++..+.+.+|++.+|.+.|...||+ .+.... ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG---KSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHH
Confidence 999888877666666666666664 45664 4556778888999999999998854432321 111111 1111
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC
Q 009176 416 APMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~ 495 (541)
+...+..+......+....+...+++....+.++...++++|.++.++.|+.+|+..+...+|+.+++.+.|.++|..++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~ 376 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS 376 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence 11111111111111222333333344433337889999999999999999999999999999999999999999998776
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 496 NAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 496 ~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
|+..|.+.+++++++.++.+++
T Consensus 377 ------------~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T TIGR00893 377 ------------FAGALMVVAALALIGALSYLLL 398 (399)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999888887776543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.7e-18 Score=179.99 Aligned_cols=383 Identities=18% Similarity=0.091 Sum_probs=224.2
Q ss_pred cCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009176 23 NGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISH 101 (541)
Q Consensus 23 ~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~ 101 (541)
....+.++.+-|++++.+|+|.+|...+.....+|..+ .++.|.+.||++++.++.+|.+...++..+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------- 108 (434)
T PRK11663 36 YFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS------- 108 (434)
T ss_pred HHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-------
Confidence 34556788899999999999999999999999999855 8999999999999999999988888876544332
Q ss_pred chHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhch
Q 009176 102 LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSI 180 (541)
Q Consensus 102 ~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~ 180 (541)
.++|.+++.-++.|.+++....+......+.||+ +||++.|+.-...++++.+-..+...+.. .-+-..-.+..++
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gw~~~f~~~~i 185 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---HYGWRYGMMIAGI 185 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHH
Confidence 2467777766666666665544555555688986 69999999988888888776665554441 0011111111111
Q ss_pred hhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcc
Q 009176 181 FPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPL 260 (541)
Q Consensus 181 ~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl 260 (541)
...+++++...++|.. | + +.
T Consensus 186 ~~~~~~~~~~~~~~~~-p-~------~~---------------------------------------------------- 205 (434)
T PRK11663 186 IAIVVGLFLCWRLRDK-P-Q------AM---------------------------------------------------- 205 (434)
T ss_pred HHHHHHHHHHHHcCCC-H-h------hc----------------------------------------------------
Confidence 1111111111111110 0 0 00
Q ss_pred ccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhH
Q 009176 261 VIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDF 340 (541)
Q Consensus 261 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~F 340 (541)
+ .++.++. ++++++.. ++.+..+. + .++.-....++++.+
T Consensus 206 ---------------~----~~~~~~~-----------~~~~~~~~-----~~~~~~~~----~-~~~~~~~~~~~~~~~ 245 (434)
T PRK11663 206 ---------------G----LPSVGEW-----------RHDALELA-----QQQEGAGL----S-RKEILTKYVLLNPYI 245 (434)
T ss_pred ---------------C----CCCcccc-----------cccccccc-----hhccccCC----C-hhhhHHHHHhcChHH
Confidence 0 0000000 00000000 00000000 0 011111236778999
Q ss_pred HHHHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHH
Q 009176 341 WLYFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAP 417 (541)
Q Consensus 341 wllf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~ 417 (541)
|.+.+.+++....-..+.+-+.+.. +..|++ ++....+++.+.+.+||+++|+++|...+++ +.+......+...+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-r~~~~~~~~~~~~~ 324 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGN-RGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC-ccHHHHHHHHHHHH
Confidence 9987766553322111112233344 345765 4556888899999999999999844331221 00111111112222
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 009176 418 MAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497 (541)
Q Consensus 418 ~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~ 497 (541)
.....+++.......+++...++|+...+...+....++|.|+.++.|+--|+......+|..++|.+.|++.|..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g--- 401 (434)
T PRK11663 325 SVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH--- 401 (434)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc---
Confidence 22222222221112233333444443333344556788999999999999999999999999999999999999743
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 498 HNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 498 ~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
|+.+|++.++++++++++.+..
T Consensus 402 ----------~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 402 ----------WTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999888887666544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=170.06 Aligned_cols=376 Identities=14% Similarity=0.089 Sum_probs=239.9
Q ss_pred chhHHHHHHHHHHH-HhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQ-SINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 7 ~~rw~~l~as~~v~-~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
.|||.....+.... +..+..+.++..-|++++.+|+|.+|...+.....+|..+ .+++|.+.||++++.++.++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45554444444444 4445578899999999999999999999999999999866 679999999999999999888888
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++..+...+ .++|++.+..++.|.+.+...+.+.....+.||+ +||.+.++.-...++++.+...+...+.
T Consensus 83 ~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 83 ILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665432 2457777777788887776666665566688887 6899888877777777665554443332
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
. +. . . ....+.. .+..
T Consensus 156 ~-----~~------------------------~----------g-------w~~~f~~---~~~~--------------- 171 (394)
T PRK03699 156 A-----RS------------------------I----------E-------WYWVYAC---IGLV--------------- 171 (394)
T ss_pred h-----cc------------------------c----------c-------HHHHHHH---HHHH---------------
Confidence 0 00 0 0 0000000 0000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
..+.. ++..+ .+ . |+.++ + + ++ ++.+. .
T Consensus 172 -----~~~~~-~~~~~----~~--------~-------p~~~~---~--------~-~~---------~~~~~-~----- 199 (394)
T PRK03699 172 -----YVAIF-ILTLF----SE--------F-------PALGK---H--------A-PK---------ADKPV-A----- 199 (394)
T ss_pred -----HHHHH-HHHHh----cC--------C-------ccccc---c--------C-cc---------ccCcc-c-----
Confidence 00000 00000 00 0 00000 0 0 00 00000 0
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSR 400 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~ 400 (541)
+. ..++.+|++.+.+++....-..+.+-+....+ ..|++ +....++++.+.+.+||+.+|.++|..
T Consensus 200 --~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-- 268 (394)
T PRK03699 200 --KE-------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-- 268 (394)
T ss_pred --cc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 01 01356788777776654332233344566664 45775 456788899999999999999885532
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhH
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs 479 (541)
+|...+.....+.++..+++....+ ..+.+...+.|++.|..++...+...|.. .++.+...|.+.....+|+
T Consensus 269 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 269 -----DLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFILTCGTIGT 342 (394)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHhhhHHH
Confidence 2223333333333333333333333 34556678899999999999888888864 5677888999999989999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
.++|.+.|+++|..+ ++.+|++.+++++++.++++.+.+-.||
T Consensus 343 ~i~p~~~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 343 MLTFVVTSPIVAHFG-------------LQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred HHHHHHHHHHHHHhC-------------chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999754 6889999999999888887777655555
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=170.74 Aligned_cols=380 Identities=12% Similarity=-0.002 Sum_probs=242.7
Q ss_pred CCCCccchhHHHHHHHHHHHHhcCCc-cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHH
Q 009176 1 MPLNSNILQWLSLVGAIWLQSINGTN-SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLL 78 (541)
Q Consensus 1 ~~~~~~~~rw~~l~as~~v~~~~Gt~-Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vll 78 (541)
||.+...+ |. +.....+....... +.++...|++++.+|+|++|...+.....+|..+ .++.|.+.||+|+|.++.
T Consensus 1 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~ 78 (393)
T PRK09705 1 MPSKFPLN-FM-LLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVA 78 (393)
T ss_pred CCCccchH-HH-HHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHH
Confidence 45554433 32 22245555444433 5588999999999999999999999999999866 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHH
Q 009176 79 IGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSA 158 (541)
Q Consensus 79 iGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i 158 (541)
+|.+...+|+...-.+ +.+|.+.+.-++.|.+.+..++.+....-+.||++||.+.|+.-....+++.+-..+
T Consensus 79 ~~~~l~~~~~~~~~~a-------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 79 ISLLLIAVGALMRELY-------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred HHHHHHHHHHHHHHHC-------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765431 235666677888899988776665554457899999999998766555555444433
Q ss_pred HHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhccccc
Q 009176 159 VNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSK 238 (541)
Q Consensus 159 ~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~ 238 (541)
...+. ++.. . ....+.. +.+.
T Consensus 152 ~~~l~----------------------------------~~~~-----~-------w~~~~~~------~~~~------- 172 (393)
T PRK09705 152 TPWLV----------------------------------QHSE-----T-------WYQTLAW------WALP------- 172 (393)
T ss_pred HHHHH----------------------------------HhcC-----C-------HHHHHHH------HHHH-------
Confidence 32211 0000 0 0000000 0000
Q ss_pred ccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCC
Q 009176 239 LKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDG 318 (541)
Q Consensus 239 ~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
.+ +.+++..+ .. + + +++ + + +++.
T Consensus 173 ----------~~-~~~~~~~~----~~---~------~----~~~---------------~-~-----------~~~~-- 195 (393)
T PRK09705 173 ----------AV-VALFAWWW----QS---A------R----EVA---------------S-S-----------HKTT-- 195 (393)
T ss_pred ----------HH-HHHHHHHH----Hh---c------C----CCc---------------c-c-----------cCCC--
Confidence 00 00000000 00 0 0 000 0 0 0000
Q ss_pred ccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchh
Q 009176 319 IYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGY 396 (541)
Q Consensus 319 ~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~ 396 (541)
.+.++.++++++|.+.+.+++....-....+-+.++.++.|.+ ++....++.++.+.+||+..|.+.|
T Consensus 196 ----------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~ 265 (393)
T PRK09705 196 ----------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMAR 265 (393)
T ss_pred ----------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0113456778889887766554333223444566666667775 4567899999999999999998855
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcC-CCcccchhhhhhhhh
Q 009176 397 FFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFG-TKNFSVNHNIVVANI 475 (541)
Q Consensus 397 ~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG-~k~fg~nyg~~~~a~ 475 (541)
.. +|...+.....+.+++.+++....+....+...+.|+..|..++...+.+.|.++ .++-|+.+|++....
T Consensus 266 r~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 338 (393)
T PRK09705 266 HQ-------DRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIG 338 (393)
T ss_pred hc-------cchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 43 2222222233334444433322121111223356788999888888888888886 467799999999888
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 476 PIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 476 ~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
.+++.++|.++|++.|..+. |+..|++.+.+++++.++.+.+..+||
T Consensus 339 ~~~~~~gp~~~G~l~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 339 FIIAGLAPWFSGVLRSISGN------------YLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88999999999999999887 999999999999988777766654444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=181.20 Aligned_cols=389 Identities=12% Similarity=0.035 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhcccc-hhhhhhccccchHHHHHHHHHHHHHH
Q 009176 9 QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFG-WISGVASVYLPLWLVLLIGSTLGLIG 87 (541)
Q Consensus 9 rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~Gll~d~~pp~~vlliGa~~~~~G 87 (541)
+|....+.+...+..-..|.++.+.|.+++.+|+|.+|...+.....+|..+| ++.|.+.||+|+|.++.+|.+...++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444555677888888999999999999999988888888774 99999999999999999988887777
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCC
Q 009176 88 YGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSS 166 (541)
Q Consensus 88 Y~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~ 166 (541)
....-. .. ++|++.+.-++.|.+.+.. ..+.....+.||+ +||++.|+..+...+.+++-..+...+.
T Consensus 115 ~~~~~~--~~-----s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~--- 183 (476)
T PLN00028 115 VFCMSL--VS-----SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF--- 183 (476)
T ss_pred HHHHHH--hc-----CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 554322 21 3455555555666655422 1122222377875 7999999876655454443333221111
Q ss_pred CCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCch
Q 009176 167 PNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPV 246 (541)
Q Consensus 167 ~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~ 246 (541)
..+. . . .. . +...+...+.+..++. +
T Consensus 184 -------------------~~~~----~-~-~~-------~---~~~gWr~~f~i~g~l~---l---------------- 209 (476)
T PLN00028 184 -------------------PLIK----D-A-GA-------P---SFTAWRIAFFVPGLLH---I---------------- 209 (476)
T ss_pred -------------------HHHH----h-c-CC-------c---chhhhHHHHHHHHHHH---H----------------
Confidence 0000 0 0 00 0 0001111111100000 0
Q ss_pred hHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCcc
Q 009176 247 KNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAK 326 (541)
Q Consensus 247 ~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (541)
+..++.++.| ++ .++.+ . ++.++ +.+.++ .+
T Consensus 210 ---~~~l~~~~~~---------~~----------~p~~~--------~---~~~~~----------~~~~~~------~~ 240 (476)
T PLN00028 210 ---IMGILVLTLG---------QD----------LPDGN--------Y---RELKK----------SGTMPK------DS 240 (476)
T ss_pred ---HHHHHHHHHc---------Cc----------CCCCc--------h---hhHHh----------cCcccc------cc
Confidence 0000001111 00 00000 0 00000 000000 00
Q ss_pred ccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCC
Q 009176 327 EEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKH 403 (541)
Q Consensus 327 ~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~ 403 (541)
....+++.++++.+|++++.+++..+......+.+....+ ..|++ ++....++..+++.+||+++|+++|.+.||+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 1123578899999999999887766665555555666544 45775 45678889999999999999999554433321
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHH----hhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhh
Q 009176 404 MIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGV----CSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 404 ~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~----~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~G 478 (541)
...|.+.+.+.+++..+..+++....+ ....+..++.++ ++|..+++.| | ++.|+.|+++|++..+.
T Consensus 321 ~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~g~~~g~~~~~g--- 392 (476)
T PLN00028 321 MRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSRRSLGVISGLTGAGG--- 392 (476)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cChhhchhhhhhhhccc---
Confidence 123555544444444443333333333 222223334444 4555555444 4 36789999999986544
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 479 s~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
.+++.+++.++|.++.. =|+.+|++.+++.+++.++.++++
T Consensus 393 -~lg~~i~~~l~~~~~~~----------~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 393 -NVGAVLTQLLFFTGSSY----------STETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -cHHHHHHHHHHHhcCCc----------cHhhHHHHHHHHHHHHHHHHHhee
Confidence 44555556666643310 099999999999999988888775
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=175.58 Aligned_cols=399 Identities=13% Similarity=0.015 Sum_probs=232.6
Q ss_pred CCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009176 24 GTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHL 102 (541)
Q Consensus 24 Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~ 102 (541)
-..+.++.-.|++++.+|+|.+|...+..+..++..+ .++.|.+.||+|+|.++.++.+...++-+.+-...... ..
T Consensus 43 ~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~ 120 (467)
T PRK09556 43 LIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--SV 120 (467)
T ss_pred HHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc--cc
Confidence 3456677888999999999999999999999999866 88999999999999998888777666655544433332 23
Q ss_pred hHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchh
Q 009176 103 SYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 103 ~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~ 181 (541)
++|++.++-++.|.+++....++.....+.||+ +||++.|+.-...++.+++-..+..........++-...+.+.++.
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~ 200 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSII 200 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 578888888888988887666666666689986 6999999987777776665443332111000001111112222222
Q ss_pred hhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccc
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLV 261 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ 261 (541)
..++.++...++|.. |.+ .++
T Consensus 201 ~~~~~i~~~~~~~~~-p~~------------~~~---------------------------------------------- 221 (467)
T PRK09556 201 ALIIGFIGLRYGSDS-PEE------------LGW---------------------------------------------- 221 (467)
T ss_pred HHHHHHHHHHhCCCC-hhh------------cCC----------------------------------------------
Confidence 222222222222211 000 000
Q ss_pred cccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHH
Q 009176 262 IPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFW 341 (541)
Q Consensus 262 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fw 341 (541)
.++ ++...+ +..+ ++ ++.+.++ .. ..+.-.+++++++.+|
T Consensus 222 --------------~~~--~~~~~~---------~~~~---~~-------~~~~~~~----~~-~~~~~~~~~l~~~~~~ 261 (467)
T PRK09556 222 --------------GKA--EEIFGE---------PISE---ED-------KETESTD----MT-KWQIFVEYVLKNPVIW 261 (467)
T ss_pred --------------CCh--hhcccC---------ccch---hh-------hcccccc----Cc-HHHHHHHHHHcChHHH
Confidence 000 000000 0000 00 0000000 00 0111123589999999
Q ss_pred HHHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHH
Q 009176 342 LYFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418 (541)
Q Consensus 342 llf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~ 418 (541)
.+++..++..+.-.....-+.... +..|++ ++....++..+.+.+|++.+|+++|...++ |...........
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r-----~~~~~~~~~~~~ 336 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR-----RALVACIALALI 336 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----chHHHHHHHHHH
Confidence 999888776443322233344444 346775 455677788889999999999996643221 222211111111
Q ss_pred HHHHHHHhhcccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh-hHHHHHHHHHHHhhhcCC-
Q 009176 419 AGAFMLLLNETNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI-GSFLFGYLAALVYHKEGH- 495 (541)
Q Consensus 419 ~~~~ll~~~~~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~-Gs~l~~~laG~iyD~~~~- 495 (541)
....+++....+. .+++...++|++..+......+.+.|.+..++.|+-.|++.+...+ |+.+++.+.|+++|.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g 416 (467)
T PRK09556 337 IFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNG 416 (467)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccc
Confidence 1112222222232 3445566777543333334446777999999999999999877665 778889999999993211
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 496 NAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 496 ~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.--+-+ ..=|+..|.+..++++++.++.+.+.
T Consensus 417 ~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 417 TPIFGYT--LTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred ccccccc--ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001 01199999999999999988888774
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=171.57 Aligned_cols=404 Identities=13% Similarity=0.042 Sum_probs=228.9
Q ss_pred chhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
+.+|..+.+......... ..+.++..-|.+++. |+|++|...+....-++..+ .++.|.+.||+|++.++.+|.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~ 103 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 103 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence 345766554444333222 123467778889988 99999999999999999866 899999999999999999998888
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++.....++-.. ..++|.+.+..++.|.+++.....+.....+.||+ .||++.|+.-...++.+++...+.....
T Consensus 104 ~i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 180 (452)
T PRK11273 104 AAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGM 180 (452)
T ss_pred HHHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 8777665544221 12356666666777777665544444444577876 5999999876666666555444322111
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
. . ..+-..-+.+.+....++.++...++|.. |++ ..
T Consensus 181 ~-~-~~gw~~~f~i~~~~~~~~~~l~~~~~~~~-~~~------~~----------------------------------- 216 (452)
T PRK11273 181 A-W-FNDWHAALYMPAFAAILVALFAFAMMRDT-PQS------CG----------------------------------- 216 (452)
T ss_pred H-H-hccHHHHHHHHHHHHHHHHHHHHHHccCC-Hhh------cC-----------------------------------
Confidence 0 0 00111111111111111112222121110 000 00
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
..+++ +.+ ++ .+++.+ +++.++.
T Consensus 217 ------------------------------~~~~~--~~~-~~----------~~~~~~----------~~~~~~~---- 239 (452)
T PRK11273 217 ------------------------------LPPIE--EYK-ND----------YPDDYN----------EKHEQEL---- 239 (452)
T ss_pred ------------------------------CCChh--hhh-hc----------cccccc----------cccCCCc----
Confidence 00000 000 00 000000 0000000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSR 400 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~ 400 (541)
.. .|.-.+.+++++.+|.+++.+++....-....+.+....++ .|++ +++...++..+++.+|++++|+++|...+
T Consensus 240 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~ 318 (452)
T PRK11273 240 TA-KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 318 (452)
T ss_pred cH-HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00 11112347889999999888766643222233445555554 5664 44556677888999999999999654322
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhh--ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLN--ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~--~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~ 477 (541)
+ +|.........+..++.+++.. ..+ ..+++...++|+...+........+.|.+..+..|+..|+......+
T Consensus 319 ~----r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 394 (452)
T PRK11273 319 G----NRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 394 (452)
T ss_pred C----CcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHH
Confidence 1 1222211112222222222221 112 22334445556654443444556788999999999999999877677
Q ss_pred hHHH-HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 478 GSFL-FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 478 Gs~l-~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
|+.+ +|.+.|+++|..+ |+..|.+++++++++++...++.+.+
T Consensus 395 g~~~~g~~v~g~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (452)
T PRK11273 395 GGSVAASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGE 438 (452)
T ss_pred HHHHhhhhhHHHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7655 5899999999864 89999999999999988888664333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-16 Score=161.89 Aligned_cols=376 Identities=14% Similarity=0.043 Sum_probs=228.6
Q ss_pred chhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
+++...++.+..+...+ .....+.....+++++|.|.+|...+..+..++..+ .++.|.+.||+|+|.++.+|.+...
T Consensus 14 ~~~~~~l~~~~~~~~~~-~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLT-IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 44455555555554443 444556677789999999999999999999999966 8999999999999999999998888
Q ss_pred HHHHHHHHHh-hhccccchHHHHHHHHHHhccccccccceeeeeecccCC-CCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 86 IGYGLQYLFL-THTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFP-FDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 86 ~GY~~~~l~~-~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP-~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
+++....... .+.+....+|.+.+.-++.|.+++...+++.....+.+| ++||++.|+.-....++..+-..+...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 8777665543 332222346777778889999998877776555567776 47999988654433332222122211111
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
+ .. . +...+.+..+++
T Consensus 173 ~------------------------------~~----------g-------~~~~~~~~~~~~----------------- 188 (399)
T PRK05122 173 H------------------------------WG----------G-------LAGLGLLIMLLA----------------- 188 (399)
T ss_pred H------------------------------cc----------c-------HHHHHHHHHHHH-----------------
Confidence 0 00 0 000000000000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
++.+++.. + . ++.+. + + +++
T Consensus 189 --------~~~~~~~~---~-------------~----~~~~~------------~-~------------~~~------- 208 (399)
T PRK05122 189 --------LLGLLLAR---P-------------R----PAVPP------------V-K------------GER------- 208 (399)
T ss_pred --------HHHHHHHh---c-------------C----CCCCC------------C-C------------ccc-------
Confidence 00000000 0 0 00000 0 0 000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHh-hcccceeecchHHHHhhhcCCcccchhhhhhhcccccccccccchhhhcccC
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSG-ATLGLVFLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSK 402 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g-~g~Glm~I~n~g~i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~ 402 (541)
.+.++.++ ++|.....+.+. .+.+. ....+....++.|.++.....+++.+....||+..|.+.|..
T Consensus 209 -----~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~---- 276 (399)
T PRK05122 209 -----LPFRRVLG--RVWPYGMGLALASIGFGT-IATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRL---- 276 (399)
T ss_pred -----hhHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 01112222 123222111111 11111 111222223344555556677788888899999988874421
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHH
Q 009176 403 HMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 403 ~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l 481 (541)
+|...+......++++.+++....+ ..+.+...+.|+++|..++.+.+.+.|.+..++.|+.+|++.+...+|..+
T Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 277 ---GGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333344445555555444444 345567788999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
++.+.|.+.|..+ |+.+|.+.++++++++++...+..|.+|
T Consensus 354 ~~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 354 TGPLAGLVASWFG-------------YPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHcC-------------HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9889999998753 8999999999999988887766554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=159.73 Aligned_cols=369 Identities=14% Similarity=0.081 Sum_probs=227.8
Q ss_pred cchhHHHHHHHHHHHHhc-CCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSIN-GTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~-Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
+.+||..+..-.+.+... -..|.-...-|++++++|+|++|...+.....++..+ .++.|.+.||+++|.++.++.+.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 83 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL 83 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 345676444444444333 2234444456899999999999999998888888865 78999999999999999999888
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..++..+...+ .++|++.+.-++.|.+.+...+.+.....+.+|+ +||.+.|+.-...+++.++-..+...+
T Consensus 84 ~~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l 156 (390)
T PRK03545 84 FIASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI 156 (390)
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88886554332 2467777777777777765555444444577775 799999987665555544333222211
Q ss_pred hcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 163 ETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 163 ~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
. +.- +....+.+..++ ++
T Consensus 157 ~----------------------------------~~~-------------gw~~~f~~~~~~--~~------------- 174 (390)
T PRK03545 157 G----------------------------------QYL-------------GWRTTFLAIGGG--AL------------- 174 (390)
T ss_pred H----------------------------------HHh-------------cHHHHHHHHHHH--HH-------------
Confidence 1 000 000001000000 00
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
++.+++... .| +. + + + ++ .
T Consensus 175 --------l~~~~~~~~--~~-------------------~~---~----------~-~-----------~~-~------ 193 (390)
T PRK03545 175 --------ITLLLLIKL--LP-------------------LL---P----------S-E-----------HS-G------ 193 (390)
T ss_pred --------HHHHHHHHh--CC-------------------CC---C----------C-C-----------Cc-c------
Confidence 000000000 00 00 0 0 0 00 0
Q ss_pred CCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhc
Q 009176 323 LGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 323 ~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
+..+.++.++++.+|..+...++......+..+.+.++.++ .|++ +.....+++++.+..|++..|.++|..
T Consensus 194 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~- 268 (390)
T PRK03545 194 ----SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH- 268 (390)
T ss_pred ----hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 00124678999999987766655443333333334444444 5665 345677888899999999998875421
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHH-HHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFM-LLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~l-l~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~ 477 (541)
+|...+.. ..++..+.+ +.....+ ..+++...+.|++++.......+.+.|... ++.+...|+......+
T Consensus 269 ------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 340 (390)
T PRK03545 269 ------PSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNI 340 (390)
T ss_pred ------chhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 34333322 222333322 2233333 346667888899988877778888888865 6778888888777788
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 478 GSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
|..+++.+.|.++|..+ ++.+|.+.+.+.++++++.....
T Consensus 341 g~~~G~~~~G~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 341 GIGAGALLGNQVSLHLG-------------LSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHhccC-------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999999865 79999999999988888876553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-16 Score=157.81 Aligned_cols=355 Identities=16% Similarity=0.083 Sum_probs=223.0
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
....|+...|.+++++|+|.+|...+.....++..+ .++.|.+.||+++|.++.+|.+...++..+...+- +
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-------S 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-------h
Confidence 345677888999999999999999999999999966 89999999999999999999999888887766542 4
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHH-HHHHHhcCCCCCcccchhhhhchh
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTS-AVNAIETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~-i~~~~~~~~~~~d~~~fLllla~~ 181 (541)
+|++.+..++.|.+.+...+.......+.+|+ +||.+.|+.-....+.+.+-.. +...+.. ..+-.......+..
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGII 159 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHH
Confidence 68888888888888887777777667788987 6999999988888887777663 3322221 11111222222333
Q ss_pred hhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccc
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLV 261 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ 261 (541)
..++.++...+.|+. +.+ .+ .++
T Consensus 160 ~~~~~~~~~~~~~~~-~~~------~~-~~~------------------------------------------------- 182 (379)
T TIGR00881 160 AIIVSLICFLLLRDS-PQS------CG-LPP------------------------------------------------- 182 (379)
T ss_pred HHHHHHHHheeeCCC-ccc------cc-cCc-------------------------------------------------
Confidence 333333333222221 100 00 000
Q ss_pred cccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHH
Q 009176 262 IPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFW 341 (541)
Q Consensus 262 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fw 341 (541)
+ ++. ++ ++.+++++ ++++. ....+...+++++++.+|
T Consensus 183 ---------------~---~~~-~~-----------~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~ 219 (379)
T TIGR00881 183 ---------------A---EEM-PN-----------EEPDGDAE------KKEEE-------LTKKQIFLQYVLLNKVLW 219 (379)
T ss_pred ---------------c---ccC-cc-----------cccccccc------ccccc-------ccchHHHHHHHHhcchHH
Confidence 0 000 00 00000000 00000 001223457889999999
Q ss_pred HHHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchh-hhcccCCCCChhHHHHHHHHH
Q 009176 342 LYFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGY-FFSRSKHMIPSPASIGALMAP 417 (541)
Q Consensus 342 llf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~-~~~~~~~~~~R~~~l~~~~~~ 417 (541)
.+.+.+++....-........... +.+|++ +.....++..+.+.+||++.|.+.| .. ++ .|..........
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~-~~----~~~~~~~~~~~~ 294 (379)
T TIGR00881 220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF-NG----RRGPLAVFFMAL 294 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc-CC----cchHHHHHHHHH
Confidence 998877665433222222333443 345765 3456778889999999999998855 32 11 122221112222
Q ss_pred HHHHHHHHhh--ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 418 MAGAFMLLLN--ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 418 ~~~~~ll~~~--~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
...+.+.... ..+ ....+...+.|+..++.....++.++|.++.++-|+..|+..+...+|+.+++.+.|.+.|..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 295 IIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 2222222222 112 2344455667776666677778899999999999999999999999999999999999999754
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=163.57 Aligned_cols=399 Identities=14% Similarity=0.026 Sum_probs=227.6
Q ss_pred cccchHHHHHHhCCC--------hhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009176 29 FPAYSSQLKQLLSLS--------QLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTI 99 (541)
Q Consensus 29 f~~ys~~lk~~l~~s--------q~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i 99 (541)
++..-+.++.+++++ +.|...+.....+|..+ .++.|.+.||+|+|.++.+|.+...+|....... ..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~- 123 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AF- 123 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--cc-
Confidence 444456677777777 99999999999999966 8999999999999999999999888876655332 21
Q ss_pred ccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHH-H-HHhcCCCCCcccchhh
Q 009176 100 SHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAV-N-AIETSSPNKRAKLYLL 176 (541)
Q Consensus 100 ~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~-~-~~~~~~~~~d~~~fLl 176 (541)
..++|.+.+..++.|.+.+...+.......+.+|+ +||.+.|+.-...++.+.+-..+. . .+.. +...-...+
T Consensus 124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f 199 (481)
T TIGR00879 124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPL 199 (481)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHH
Confidence 23457788888889998887777766666688875 799999998777777666665554 1 2210 011112222
Q ss_pred hhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHh
Q 009176 177 FNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICL 256 (541)
Q Consensus 177 lla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll 256 (541)
.+...+.++.++...+++.- |... .+++++..-.
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~-~~~~-----~~~~~~~~~~---------------------------------------- 233 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFLPES-PRWL-----VGKGRVEEAR---------------------------------------- 233 (481)
T ss_pred HHHHHHHHHHHHHHhcCCCC-hHHH-----HHcCChHHHH----------------------------------------
Confidence 22333333333333333221 1000 0000000000
Q ss_pred hhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhh--
Q 009176 257 LAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLM-- 334 (541)
Q Consensus 257 ~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~-- 334 (541)
+..++. +..+ +.+++.....+..+ +... .+.+.++ ......++.
T Consensus 234 ----------------~~~~~~----~~~~-~~~~~~~~~~~~~~-~~~~-----~~~~~~~-------~~~~~~~~~~~ 279 (481)
T TIGR00879 234 ----------------KSLARL----RGTS-GEDKELLDELELID-IKRS-----IEKRSVQ-------PSWGSLFSSTR 279 (481)
T ss_pred ----------------HHHHHH----hCCC-CCcHHHHHHHHHHH-HHHH-----HHHhhcc-------ccHHHHHhcCc
Confidence 000000 0000 00000000000000 0000 0000000 000011111
Q ss_pred -hhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHH
Q 009176 335 -LQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASI 411 (541)
Q Consensus 335 -l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l 411 (541)
.+.+.+|..++.++..........+-...+.+..|++. .....++..+.+.+|++++|++.|.. +|...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------~~~~~~ 352 (481)
T TIGR00879 280 RIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-------GRRPLL 352 (481)
T ss_pred hhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchHHH
Confidence 23444555555544432222223333445556677753 45677778888999999999885432 222333
Q ss_pred HHHHHHHHHHHHHHh---h--cc------cchhHHHHHHHHHhhhccc-hhhHHHhhhhcCCCcccchhhhhhhhhhhhH
Q 009176 412 GALMAPMAGAFMLLL---N--ET------NVALYTSTAIIGVCSGAIT-SISVTTTTELFGTKNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 412 ~~~~~~~~~~~ll~~---~--~~------~~~l~~~s~liG~~yG~~~-~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs 479 (541)
...+++++++++++. . .. +........+.+.++|..+ ++..++++|.++.++.++..++......+|+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~ 432 (481)
T TIGR00879 353 LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN 432 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH
Confidence 333444444444333 1 11 1122333445555666544 5555677999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
.+++.++|.++|..+ ++..|.+.+++++++.++.+++..++|
T Consensus 433 ~i~~~~~~~~~~~~~-------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 433 FIVGFLFPTMLESIG-------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHHhcC-------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 999999999999743 688999999999999888877655554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=160.76 Aligned_cols=379 Identities=15% Similarity=0.058 Sum_probs=227.3
Q ss_pred cchhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
++.+|..+..+.+.....|. .+.++.+.|.+++.+|+|..|...+.....++..+ .++.|.+.||++++.++.+|.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 45567777777766665553 56778899999999999999999999888888866 78999999999999999999988
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..+++...... .++|.+.+..++.|.+.+...++......+.+|+ +||++.|+.-....+++.+-..+...+
T Consensus 92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 164 (398)
T TIGR00895 92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164 (398)
T ss_pred HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence 88887766542 2457777778888888887776666666688986 699999998888888877776666555
Q ss_pred hcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 163 ETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 163 ~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
.+ ..+-.....+.+..+.+..++...+++.. +... .+++++..
T Consensus 165 ~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~---------------------------- 207 (398)
T TIGR00895 165 IP---VFGWRSLFYVGGIAPLLLLLLLMRFLPES-IDFL-----VSKRPETV---------------------------- 207 (398)
T ss_pred hh---cccceeehhhhhhHHHHHHHHHHHhCCCC-ChHH-----HhcCHHHH----------------------------
Confidence 41 11112222222233333323222222211 0000 00000000
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
++ ..++. .++..+ +.+ ++.+ ++.+.++
T Consensus 208 --------------------------~~---~~~~~--~~~~~~------------~~~--~~~~----~~~~~~~---- 234 (398)
T TIGR00895 208 --------------------------RR---IVNAI--APQMQA------------EAQ--SALP----EQKATQG---- 234 (398)
T ss_pred --------------------------HH---HHHHH--HHhccc------------ccc--cccc----ccccccc----
Confidence 00 00000 000000 000 0000 0000000
Q ss_pred CCccccC-CHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhc
Q 009176 323 LGAKEEI-GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 323 ~~~~~d~-t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
..++.. ..++-.+.+.+|.+++.+++.........+.+..+.+..|++ +.....++.++...+|++.+|.+.|..
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 312 (398)
T TIGR00895 235 -TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL- 312 (398)
T ss_pred -hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 000000 011111223455555555443322222222334455566765 345678888889999999998885432
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~G 478 (541)
+|...+...........++.....+ ..+++..++.|+++|..++...+.++|.++.++-|+.+|++.....+|
T Consensus 313 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 386 (398)
T TIGR00895 313 ------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLG 386 (398)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222221223 456778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009176 479 SFLFGYLAALV 489 (541)
Q Consensus 479 s~l~~~laG~i 489 (541)
..++|.++|++
T Consensus 387 ~~~g~~~~G~l 397 (398)
T TIGR00895 387 AIIGPILAGYL 397 (398)
T ss_pred HHHHHHhHHhc
Confidence 99999999875
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=155.78 Aligned_cols=383 Identities=14% Similarity=0.100 Sum_probs=226.6
Q ss_pred cchhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
++++|..+.+........+ ..+.++...|++++.+|+|++|...+.....++..+ +++.|.+.||+|+|.++.++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4566766655555544444 445577888999999999999999999999999866 89999999999999999999888
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..++......+ .++|.+.+..++.|.+.+....++.....+.+|+ +||.+.|+.-...+++..+-..+...+
T Consensus 87 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l 159 (405)
T TIGR00891 87 FSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV 159 (405)
T ss_pred HHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87876655431 2568888888899998887777766666788886 699999998888888877777666555
Q ss_pred hcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 163 ETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 163 ~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
... .++.-.....++..+.++.++.. +.. |++++ .+++++.
T Consensus 160 ~~~--~~~~w~~~f~~~~~~~~~~~~~~---~~~-~~~~~----~~~~~~~----------------------------- 200 (405)
T TIGR00891 160 VPV--WGDGWRALFFISILPIIFALWLR---KNI-PEAED----WKEKHAG----------------------------- 200 (405)
T ss_pred HHh--cCccHHHHHHHHHHHHHHHHHHH---HhC-CCChh----HHHHhhh-----------------------------
Confidence 410 01111122223333333222211 111 11100 0000000
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
.++. ++...+..+.++ .. ++...+.
T Consensus 201 --------------------------------~~~~------------~~~~~~~~~~~~---~~----~~~~~~~---- 225 (405)
T TIGR00891 201 --------------------------------KALV------------RTMVDILYGGEH---RI----ANIVMTL---- 225 (405)
T ss_pred --------------------------------hhhh------------hhHHHHHhccch---hh----hhhhhhh----
Confidence 0000 000000000000 00 0000000
Q ss_pred CCccccCCHHhhhhchhHHH----HHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccch
Q 009176 323 LGAKEEIGAMLMLQRVDFWL----YFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFG 395 (541)
Q Consensus 323 ~~~~~d~t~~q~l~~~~Fwl----lf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s 395 (541)
. ...++ +....|. +.+.+.+.........+...... +.+|.+ +.....++..+...+|++..|.+.
T Consensus 226 ---~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~ 298 (405)
T TIGR00891 226 ---A--AAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLG 298 (405)
T ss_pred ---h--HHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001 0112222 22221111111111122233333 345665 345677888899999999999885
Q ss_pred hhhcccCCCCChhHHHHHHHHHHHH-HHHHHhhcccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhh
Q 009176 396 YFFSRSKHMIPSPASIGALMAPMAG-AFMLLLNETNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVA 473 (541)
Q Consensus 396 ~~~~~~~~~~~R~~~l~~~~~~~~~-~~ll~~~~~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~ 473 (541)
|.. +|...+....+.... ...++....+. .+.+...+.|++.++.+++.|+.+.|.++.++-|+..|+...
T Consensus 299 dr~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (405)
T TIGR00891 299 DWL-------GRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQ 371 (405)
T ss_pred HHh-------CchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence 432 222222222222211 12222222232 344455778888899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHH
Q 009176 474 NIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 474 a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~ 515 (541)
...+|+.++|.++|.++|+.++ |+.+|..+
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~------------~~~~~~~~ 401 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDE------------YGTALASL 401 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------cchhHHhh
Confidence 8899999999999999999887 77777664
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=160.42 Aligned_cols=378 Identities=15% Similarity=0.053 Sum_probs=221.6
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
..+..+.-.|.+++.+|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.++.+...++.....++ . +
T Consensus 23 d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~-----~ 95 (412)
T TIGR02332 23 DRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--T-----G 95 (412)
T ss_pred hhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--c-----C
Confidence 345566678899999999999999999999999866 7999999999999999999988888888776432 2 2
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCC---CCcccchhhhhc
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSP---NKRAKLYLLFNS 179 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~---~~d~~~fLllla 179 (541)
+|.+.+.-++.|.+++...++......+.||+ +||++.|+.....+++..+-..+...+..... ..+-..-....+
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~ 175 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEG 175 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHH
Confidence 46667777788888876555554444577886 69999999998888877766555544431000 001111111122
Q ss_pred hhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhc
Q 009176 180 IFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAP 259 (541)
Q Consensus 180 ~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~P 259 (541)
+...++.++...++|.- |.+ .+.. +
T Consensus 176 ~~~l~~~~~~~~~~~~~-p~~------------~~~l------------------------------------------~ 200 (412)
T TIGR02332 176 FPSVILGVMTWFWLDDS-PDK------------AKWL------------------------------------------D 200 (412)
T ss_pred HHHHHHHHHHhhccCCC-ccc------------CCCC------------------------------------------C
Confidence 22222222222222211 100 0000 0
Q ss_pred cccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchh
Q 009176 260 LVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVD 339 (541)
Q Consensus 260 l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~ 339 (541)
+ + +++... .+.+.++ .+.++ ++ ++.+.++ . .....+++ ++++.
T Consensus 201 ------~--~---~~~~~~---~~~~~~~------~~~~~--~~--------~~~~~~~-----~-~~~~~~~~-~~~~~ 243 (412)
T TIGR02332 201 ------E--E---DKKALK---EMIDNDQ------LTLEQ--PE--------GAFAHAA-----M-PQRSMLRE-IFTPA 243 (412)
T ss_pred ------H--H---HHHHHH---HHHHhcc------ccccc--cc--------ccccccc-----c-cHHHHHHH-hcChH
Confidence 0 0 000000 0000000 00000 00 0000000 0 00012333 44688
Q ss_pred HHHHHHHHHHhhcccceeecchHHHHhhh--cCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 340 FWLYFFVYFSGATLGLVFLNNLGQIAESR--GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 340 Fwllf~~~~~g~g~Glm~I~n~g~i~~sl--g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
+|...+++++..+.=-.....+.++.++. |++ ++....++..+++.+||+..|+++|...+ |...+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~------r~~~~~~~~ 317 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKE------RKHHTALPY 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCc------cHHHHHHHH
Confidence 99998888776543223445677777765 443 34566788889999999999998554311 222222222
Q ss_pred HHHHHHHHHHhhcccchhHH-HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 416 APMAGAFMLLLNETNVALYT-STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~~~l~~-~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
+.+.++.++.....+....+ +..+.+++.....++......|.|+.|+.++.+|+.+....+|+.++|.+.|.+.|..+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 33333332222222222222 22222333333334455666789999999999999999999999999999999999988
Q ss_pred CCCCCCccccccccHHHHHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFC 519 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~ 519 (541)
+ |+.+|.+.++..
T Consensus 398 ~------------~~~~~~~~~~~~ 410 (412)
T TIGR02332 398 S------------FNSGLWFVAALL 410 (412)
T ss_pred C------------CchhHHHHHHHH
Confidence 8 999998776643
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-15 Score=156.66 Aligned_cols=360 Identities=13% Similarity=0.080 Sum_probs=218.6
Q ss_pred hhHHHHHHHHHHHHhcCCcc-ccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSINGTNS-NFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~Gt~Y-~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
.||..+..+.......+..+ ..+...|.+++.+|+|..|...+.....+|..+ +++.|.+.||+|+|.++.+|.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44555555555555555433 445566888999999999999999999999866 8999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
++....-.+ + ++|.+.++-++.|.+.+...++......+.||+ +||++.|+.....+++..+-..+...+..
T Consensus 95 ~~~~~~~~~--~-----~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~ 167 (426)
T PRK12307 95 VGTGLSGLA--S-----GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167 (426)
T ss_pred HHHHHHHHH--h-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence 988764442 1 357777778888888876666666666788987 59999999888888777765555433320
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCC
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLP 244 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~ 244 (541)
.-.-...++++..+.++.+ +++.. .
T Consensus 168 ----~~~w~~~f~i~~~~~~~~~----~~~~~-~---------------------------------------------- 192 (426)
T PRK12307 168 ----AYGWRAAFFVGLLPVLLVI----YIRAR-A---------------------------------------------- 192 (426)
T ss_pred ----cCCHHHHHHHHHHHHHHHH----HHHHH-C----------------------------------------------
Confidence 0000001111111111000 00000 0
Q ss_pred chhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCC
Q 009176 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLG 324 (541)
Q Consensus 245 ~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
| ++ .++.++ +. + +++++ ++...
T Consensus 193 ------------------p------~~-~~~~~~----~~-~------------~~~~~--------~~~~~-------- 214 (426)
T PRK12307 193 ------------------P------ES-KEWEEA----KL-S------------GKGKH--------SQSAW-------- 214 (426)
T ss_pred ------------------C------CC-hHHHHh----hh-h------------ccccc--------cccch--------
Confidence 0 00 000000 00 0 00000 00000
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHh---hcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhc
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSG---ATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g---~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
+....+.+++++++.+|.....+.+. .+....+.+.+....++.|++ ......++..+.+.+||+..|.+.|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~- 293 (426)
T PRK12307 215 SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI- 293 (426)
T ss_pred hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00112467889999998755433221 122112334455566666765 345667788888999999999884432
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHHHHhh--hccchhhHHHhhhhcCCCcccchhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLN-ETNVALYTSTAIIGVCS--GAITSISVTTTTELFGTKNFSVNHNIVVANIP 476 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~s~liG~~y--G~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~ 476 (541)
+|...+....++..+..+++.. ..+....+..++.|+.+ .+..++.|+++.|.|+.++.|+..|+......
T Consensus 294 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 367 (426)
T PRK12307 294 ------GLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA 367 (426)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh
Confidence 3333333333333333332222 22222333444555543 34567899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcC
Q 009176 477 IGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 477 ~Gs~l~~~laG~iyD~~~ 494 (541)
+|+.++|.+.|++.|.-+
T Consensus 368 ~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 368 TSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 999999999999998764
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=158.11 Aligned_cols=404 Identities=14% Similarity=0.082 Sum_probs=228.8
Q ss_pred hhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
.||..+.+......... ....|+...|.+++ +|+|++|...+..+..+|..+ .++.|.+.||++++.++.+|.+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence 46777666655544333 34556677888887 599999999999999998866 7999999999999999999988888
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
+++...... ... ..++|.+++..++.|.++.....+......+.||+ +||++.|+.-...++++.+...+......
T Consensus 103 ~~~~~~~~~--~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 103 AVMLLMGFV--PWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred HHHHHHhcc--ccc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 887765433 111 12456777766677766554433333344577975 79999999777777776665554433220
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCC
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLP 244 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~ 244 (541)
.. .+-...|++ .+....+..++...++|.. |++ .+. +
T Consensus 180 ~~-~~w~~~f~~-~~~~~~i~~~~~~~~~~~~-~~~------~~~-~--------------------------------- 216 (438)
T TIGR00712 180 WF-NDWHAALYF-PAICAIIVALFAFAMMRDT-PQS------CGL-P--------------------------------- 216 (438)
T ss_pred Hh-hhhHHHHHH-HHHHHHHHHHHHHHhccCC-HHh------cCC-C---------------------------------
Confidence 00 001111111 1111111112222222111 000 000 0
Q ss_pred chhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCC
Q 009176 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLG 324 (541)
Q Consensus 245 ~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+. + +.++ +.+++. .++++++ .+
T Consensus 217 -------------------------------~~---~-~~~~---------~~~~~~----------~~~~~~~----~~ 238 (438)
T TIGR00712 217 -------------------------------PI---E-EYRN---------DYPDDY----------NEKAEQE----LT 238 (438)
T ss_pred -------------------------------Cc---h-hccc---------cccccc----------ccccccc----cc
Confidence 00 0 0000 000000 0000000 00
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccc-hhhhcc
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSR 400 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~ 400 (541)
.++...++.++++.||.+.+..++....-......+.+..++ .|++ ++....+++++.+.+|++.+|++ |++. +
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~-~ 316 (438)
T TIGR00712 239 -AKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF-K 316 (438)
T ss_pred -hHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 011112357899999999776655432222233455566654 4665 34566778888999999999988 4442 1
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhhc-c-c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLNE-T-N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~~-~-~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~ 477 (541)
+ .|............++.+++... . + ...++....+|+...+.....-..+.|.++.|+.|+..|+.....-+
T Consensus 317 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 392 (438)
T TIGR00712 317 G----NRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 392 (438)
T ss_pred C----cccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHh
Confidence 1 12221111111112222222211 1 1 22233333444432222222234678999999999999999877666
Q ss_pred hH-HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 478 GS-FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 478 Gs-~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
|+ .++|.+.|.+.|..+ |+.+|++.++.++++.++.+++....||
T Consensus 393 gg~~~gp~l~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 393 GGSVAASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hhhhhcchhHHHHHHhcc-------------chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 65 567999999999653 8999999999999999998888766554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=149.98 Aligned_cols=331 Identities=14% Similarity=0.058 Sum_probs=209.3
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
..++..-|++++.+|+|.+|...+.....+|..+ +++.|.+.||+++|.++.+|.+...++.... .. .+.|
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~-----~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR---SA-----PGTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH---Hh-----ccHH
Confidence 4567888999999999999999999999999966 8999999999999999999988877776543 11 2346
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHh
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLA 185 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v 185 (541)
.+.+..++.|.+.+..+++.-....+.||++||.+.|+.-...++...+-..+...+.+ ...
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-----~~~------------- 150 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQ-----HSG------------- 150 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhh-------------
Confidence 66666777788777655554444457889999999998777666666554444332220 000
Q ss_pred HhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccc
Q 009176 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLG 265 (541)
Q Consensus 186 ~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~ 265 (541)
. +....+.... .. ..+..++..| ..
T Consensus 151 ---------------------~------~w~~~f~~~~---~~---------------------~~~~~~~~~~----~~ 175 (355)
T TIGR00896 151 ---------------------G------HWQQALAWWA---LP---------------------ALLALLAWIP----QV 175 (355)
T ss_pred ---------------------h------hHHHHHHHHH---HH---------------------HHHHHHHHhh----hh
Confidence 0 0000000000 00 0000000111 00
Q ss_pred cchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHH
Q 009176 266 EKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFF 345 (541)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~ 345 (541)
+ ++ + + + +++. ++.+.++++|++.+|.+.+
T Consensus 176 ---~------------~~--~------------~-~-----------~~~~----------~~~~~~~~~~~~~~~~~~~ 204 (355)
T TIGR00896 176 ---R------------RR--V------------A-A-----------NQTT----------TRLTPVRIWRSPLAWQVTV 204 (355)
T ss_pred ---c------------cc--c------------C-C-----------CCCC----------CCCCCchhhcCHhHHHHHH
Confidence 0 00 0 0 0 0000 0112356788899998877
Q ss_pred HHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHH
Q 009176 346 VYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFM 423 (541)
Q Consensus 346 ~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~l 423 (541)
.+++....-......+.+..++.|.+ +.....++..+...+||+..|.+.|.. + +|...+.+..++++++.+
T Consensus 205 ~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~-----~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 205 FFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRV-K-----DQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-c-----cchHHHHHHHHHHHHHHH
Confidence 66554333333444566667777775 356788889999999999999884422 1 233333333344444444
Q ss_pred HHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCC-CcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC
Q 009176 424 LLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGT-KNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 424 l~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~-k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~ 495 (541)
.+....+....+..++.|+++|..+++..+.+.+.+.. ++.++.+|++.....+|..++|.+.|+++|..++
T Consensus 279 ~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 279 GLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333322233356788999999999988888877665 5568888988877778888899999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-14 Score=148.21 Aligned_cols=349 Identities=10% Similarity=0.010 Sum_probs=203.7
Q ss_pred cccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHH-HHHhhhccccchHHH
Q 009176 29 FPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQ-YLFLTHTISHLSYAH 106 (541)
Q Consensus 29 f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~-~l~~~~~i~~~~~w~ 106 (541)
.+.-+..+++++|+|.+|...+-.+..++..+ .++.|.+.||+++|.++.+|.+...++.... +..........++|.
T Consensus 35 ~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (392)
T PRK12382 35 LPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFAL 114 (392)
T ss_pred hhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHH
Confidence 34444568999999999999999999999866 8999999999999999999887766553221 111111111235677
Q ss_pred HHHHHHHhccccccccceeeeeecccCC-CCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHh
Q 009176 107 IFLLTVLAGNSICWINTVCYVVTIKNFP-FDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLA 185 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa~lvt~v~NFP-~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v 185 (541)
+.+.-++.|.+.+...+++.....+.+| ++||++.|+.-....++..+-..+...+. +.
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~------~~-------------- 174 (392)
T PRK12382 115 LVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH------SH-------------- 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH------hc--------------
Confidence 7777788888888776666555557776 57999998743322222222221111111 00
Q ss_pred HhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccc
Q 009176 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLG 265 (541)
Q Consensus 186 ~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~ 265 (541)
. ++...+.+..++ .++.++..+ +.
T Consensus 175 ----------~-----------------g~~~~~~~~~~~-------------------------~~~~~~~~~---~~- 198 (392)
T PRK12382 175 ----------F-----------------GFAALALTTMVL-------------------------PLLAWAFNG---TV- 198 (392)
T ss_pred ----------c-----------------ChHHHHHHHHHH-------------------------HHHHHHHHH---hc-
Confidence 0 010000000000 000000000 00
Q ss_pred cchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHH
Q 009176 266 EKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFF 345 (541)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~ 345 (541)
+ + . + ++ +++++ +.++.++ .+|...+
T Consensus 199 ---~-----------~--~---~------------~~----------~~~~~------------~~~~~~~--~~~~~~~ 223 (392)
T PRK12382 199 ---R-----------K--V---P------------AH----------AGERP------------SLWSVVG--LIWKPGL 223 (392)
T ss_pred ---c-----------C--C---C------------CC----------cccCc------------hHHHHHH--HHHHhHH
Confidence 0 0 0 0 00 00000 0111111 2222211
Q ss_pred HHHHhhcccceeecc-hHHHHhhhcCCcccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHH
Q 009176 346 VYFSGATLGLVFLNN-LGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFML 424 (541)
Q Consensus 346 ~~~~g~g~Glm~I~n-~g~i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll 424 (541)
...+ .+.+...+.. .....++.+.++.....+..++.+..|++..|.+.|... +|.. +.....++.++.++
T Consensus 224 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g------~~~~-~~~~~~~~~~~~~~ 295 (392)
T PRK12382 224 GLAL-QGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFG------GVKV-AIVSLLVETVGLLL 295 (392)
T ss_pred HHHH-HHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCee-hHHHHHHHHHHHHH
Confidence 1111 1111111211 123334445555555666677778889999887743221 2222 22233444445444
Q ss_pred Hhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccc
Q 009176 425 LLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCM 503 (541)
Q Consensus 425 ~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~ 503 (541)
+....+ ..+++..++.|+++|..++..++.+.|.++.|+.|+.+|+..+...+|..+++.++|.+.|..+
T Consensus 296 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--------- 366 (392)
T PRK12382 296 LWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--------- 366 (392)
T ss_pred HHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 444433 3455677889999999888899999999999999999999999999999999999999999754
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 504 GMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 504 G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
|+..|.+.+++.+++.++.+..
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 367 ----YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred ----chHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999888888776644
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=150.73 Aligned_cols=390 Identities=13% Similarity=0.042 Sum_probs=216.4
Q ss_pred CCCccchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHH
Q 009176 2 PLNSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIG 80 (541)
Q Consensus 2 ~~~~~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliG 80 (541)
.+..+++-|...++-.....+.| ..++..+..+++++|+|++|...+-....++..+ .++.|.+.||+++|.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~ 82 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWI 82 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 34445666777665555555444 3577888889999999999999998888888855 99999999999999988876
Q ss_pred HHHHHHHHHHHHH-HhhhccccchHHHHHH-HHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHH
Q 009176 81 STLGLIGYGLQYL-FLTHTISHLSYAHIFL-LTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSA 158 (541)
Q Consensus 81 a~~~~~GY~~~~l-~~~~~i~~~~~w~l~~-~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i 158 (541)
.....++...... ...... ....+..++ ..++.|.+.... ...+..-..+++++||.+.|.......++.++-..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~ 160 (420)
T PRK09528 83 ISGLLVLFGPFFIYVFAPLL-QYNILLGAIVGGIYLGFGFLAG-AGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFI 160 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccc-hhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHH
Confidence 6555544332211 111110 011222111 111112111100 011111124567788888888887777777776655
Q ss_pred HHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhccccc
Q 009176 159 VNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSK 238 (541)
Q Consensus 159 ~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~ 238 (541)
...+.. .+....| .+..+..+++++...++++. +++
T Consensus 161 ~g~l~~---~~~~~~f--~~~~~~~~~~~~~~~~~~~~-~~~-------------------------------------- 196 (420)
T PRK09528 161 AGILFN---INPQINF--WLGSGSALILLVLLFFAKPD-APS-------------------------------------- 196 (420)
T ss_pred HHHHHh---cCchHhH--HHHHHHHHHHHHHHhccccc-ccc--------------------------------------
Confidence 444431 0111111 11111111111111111110 000
Q ss_pred ccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCC
Q 009176 239 LKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDG 318 (541)
Q Consensus 239 ~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
+ ++. + ++++ ++++.
T Consensus 197 --------------------------------------~----~~~-----------~--~~~~---------~~~~~-- 210 (420)
T PRK09528 197 --------------------------------------T----AKV-----------A--NALG---------ANASA-- 210 (420)
T ss_pred --------------------------------------h----hhh-----------c--cchh---------ccccc--
Confidence 0 000 0 0000 00000
Q ss_pred ccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhh----cCC--cccchhhhhhhcccccccccc
Q 009176 319 IYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESR----GCS--GTSSLVSLSSSFGFFGRLIPS 392 (541)
Q Consensus 319 ~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~sl----g~~--~~~~~Vsl~Si~N~~GRl~~G 392 (541)
.+-...++.+|++.+|.+.+...+....--+..........+. +.+ ......++..+.+.+|.+.+|
T Consensus 211 -------~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 283 (420)
T PRK09528 211 -------VSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAP 283 (420)
T ss_pred -------ccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001245688888888776544333221111111222222221 222 223556666777888888888
Q ss_pred cchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhh-
Q 009176 393 LFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNI- 470 (541)
Q Consensus 393 ~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~- 470 (541)
.+.|.. +|...+....++..++.+++....+ ..+++...+.|+.++......-..+.|.++.|+.++.++.
T Consensus 284 ~l~dr~-------g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 356 (420)
T PRK09528 284 FIINRI-------GAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG 356 (420)
T ss_pred HHHHHh-------CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence 774432 2222233333444445444444433 3456667788888887777777888999999999999887
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 471 VVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 471 ~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
..+...+|+.+++.+.|+++|..+ |+.+|.+.+++.+++.++.+...++
T Consensus 357 ~~~~~~lg~~ig~~~~G~l~~~~G-------------~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 357 FQFAKQLGAVFLSTLAGNLYDSIG-------------FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-------------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456778999999999999999753 8999999999888877766655433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-15 Score=159.49 Aligned_cols=384 Identities=16% Similarity=0.107 Sum_probs=234.4
Q ss_pred CCccccccchHHHHHHhCCC---hhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009176 24 GTNSNFPAYSSQLKQLLSLS---QLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTI 99 (541)
Q Consensus 24 Gt~Y~f~~ys~~lk~~l~~s---q~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i 99 (541)
|-.|.++.+.+++++.+|++ ..|...+.....+|..+ +++.|.+.||+|+|.++.++.+...++......+
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----- 177 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS----- 177 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----
Confidence 45577768999999999999 99999999999999966 7999999999999999999988888777655431
Q ss_pred ccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhh
Q 009176 100 SHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFN 178 (541)
Q Consensus 100 ~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLlll 178 (541)
..+|.+.++-++.|.+.+...+.+.....+.+|+ +||.+.++.-..++++..+...+. .+. .+- ..+.+.
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~-----~~w-r~~~~~ 248 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA-YFI-----PDW-RWLQLA 248 (505)
T ss_pred --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH-HHh-----hHH-HHHHHH
Confidence 3578888888999999998888888888899987 599999988666666655444443 333 122 222233
Q ss_pred chhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhh
Q 009176 179 SIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLA 258 (541)
Q Consensus 179 a~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 258 (541)
...|.++.++...+++.- |+.. . ...+.++.
T Consensus 249 ~~i~~~~~~~~~~~~~es-p~~l--~-~~~~~~~a--------------------------------------------- 279 (505)
T TIGR00898 249 VSLPTFLFFLLSWFVPES-PRWL--I-SQGRIEEA--------------------------------------------- 279 (505)
T ss_pred HHHHHHHHHHHHHhcCCC-hHHH--H-HCCCHHHH---------------------------------------------
Confidence 334444444443332211 1000 0 00000000
Q ss_pred ccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhch
Q 009176 259 PLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRV 338 (541)
Q Consensus 259 Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~ 338 (541)
++..++..+. ++... .++.. +.+. + ++.+. + ++..+.+++++++
T Consensus 280 ----------~~~l~~~~~~---~~~~~---~~~~~-~~~~-~----------~~~~~-~-------~~~~~~~~l~~~~ 323 (505)
T TIGR00898 280 ----------LKILQRIAKI---NGKKL---PAEVL-SLSL-E----------KDLSS-S-------KKQYSFLDLFRTP 323 (505)
T ss_pred ----------HHHHHHHHHH---cCCCC---CHHHH-hhhh-h----------hhhhh-c-------cCCCcHHHHhCCh
Confidence 0000000000 00000 00000 0000 0 00000 0 1124678999999
Q ss_pred hHHHHHHHHHHhhcccceeecchHHHHhhhcCCcccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~ 418 (541)
.+|...+...+.........+.+....+.++.+ ......+.++....|+++.+++.|.. +|...+.+.++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~-------grr~~~~~~~~~~ 395 (505)
T TIGR00898 324 NLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRL-------GRRYTMAASLLLA 395 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 998887666544322111111111111122222 22233345666777888888775432 4555555555555
Q ss_pred HHHHHHHhhccc---chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC
Q 009176 419 AGAFMLLLNETN---VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 419 ~~~~ll~~~~~~---~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~ 495 (541)
+++.+++....+ ....+...+.+++.++.+.+..++++|.|+.++-++-.|+......+|+.++|.+.+ + |.. .
T Consensus 396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~-~ 472 (505)
T TIGR00898 396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEK-W 472 (505)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHH-H
Confidence 555554443332 234445567788888899999999999999999999999999999999999998888 3 332 2
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 496 NAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 496 ~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+..+|.+.+++++++.++.+++
T Consensus 473 ------------~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 473 ------------LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred ------------HhhHHHHHHHHHHHHHHHHHcC
Confidence 4678888888888887777665
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=146.20 Aligned_cols=379 Identities=13% Similarity=0.095 Sum_probs=222.5
Q ss_pred cchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
+++.+....+....+...+..|. .. +.+.+.+|+|.+|...+.....++..+ .++.|.+.||+++|.++.+|.+..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~--~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~ 88 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQG--WL-SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLW 88 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHH--hH-HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34556666666666777776554 23 445567899999999999999999866 899999999999999999999888
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCC-CCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFP-FDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP-~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++.... . ..+- ...++|.+.+.-++.|.+......+......+++| ++||++.|+.-...+++.+++..+.....
T Consensus 89 ~~~~~~~-~-~~~~-~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 89 CVGHAAF-I-VFGL-GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHH-H-HHhc-cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8875433 1 1111 11245666666667777765433333333446665 58999999877776665433332221111
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
+... ... . .+. ... .+..
T Consensus 166 -----------------------------~~~~-g~~-----------~-~~~----~~~---~~~~------------- 183 (402)
T TIGR00897 166 -----------------------------IPAF-GEM-----------N-TLW----SAL---AFVL------------- 183 (402)
T ss_pred -----------------------------cccc-chH-----------H-HHH----HHH---HHHH-------------
Confidence 0000 000 0 000 000 0000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
..+++.++. . ++ . . +++. ++++ ++ .+
T Consensus 184 ------~~~~~~~~~---~------~~---~-~----~~~~--------------~~~~----------~~-~~------ 209 (402)
T TIGR00897 184 ------TGGVIALFS---N------KD---I-F----TPQH--------------MQTR----------EK-FS------ 209 (402)
T ss_pred ------HHHHHHHhc---c------CC---C-C----Cccc--------------ccCC----------cc-hh------
Confidence 000000000 0 00 0 0 0000 0000 00 00
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhccc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRS 401 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~ 401 (541)
+.....++.++++.+|.+.+..++....-.....-.....+++|++. .....++..+.+.+|++..|.+.|...
T Consensus 210 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~-- 285 (402)
T TIGR00897 210 --ELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG-- 285 (402)
T ss_pred --hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 00012457889999999887766654322223334445556777753 345667788899999999988844321
Q ss_pred CCCCChhHHHHHHHHHHHH---HHHHHhh--ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhh
Q 009176 402 KHMIPSPASIGALMAPMAG---AFMLLLN--ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANI 475 (541)
Q Consensus 402 ~~~~~R~~~l~~~~~~~~~---~~ll~~~--~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~ 475 (541)
+|........+.+.+ ....... ..+ ..+++...+.|+++++..+ ..+.++|. .+++.|+.+|+.+++.
T Consensus 286 ----~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~ 359 (402)
T TIGR00897 286 ----WMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSA 359 (402)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHH
Confidence 122211111111122 1111111 122 2355677888999887654 45667776 5679999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 476 PIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 476 ~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.+|..++|.++|.++|..+ +...|.+.+++.+++.++..++
T Consensus 360 ~lg~~~gp~i~g~l~~~~g-------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 360 GLSAFLAPAIAVLFIGFFG-------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHhhcc-------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864 6889999998888888777665
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=141.60 Aligned_cols=330 Identities=19% Similarity=0.142 Sum_probs=232.0
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
..+.++.+.|.+.+++|.|++|.+.+.....++..+ .++.|.+.||+++|..+.+|.+...+++....+. .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 86 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS 86 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence 456677888899999999999999999999999966 8999999999999999999999999999887765 24
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhh
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFP 182 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p 182 (541)
+|.+.+..++.|.+.+...++.-....+.+|+ +|+++.|+.-...++++.+-..+...+.. .+.-...+.+...+
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 162 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE----SLGWRWLFLILAIL 162 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHH
Confidence 67778888888998888777777777799997 89999999888888887777666655541 11111111111111
Q ss_pred hHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccc
Q 009176 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVI 262 (541)
Q Consensus 183 ~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~i 262 (541)
.++..+...+.+
T Consensus 163 ~~~~~~~~~~~~-------------------------------------------------------------------- 174 (352)
T cd06174 163 GLLLALLLLFLL-------------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 111111110000
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
+++|.
T Consensus 175 ---------------------------------------------------------------------------~~~~~ 179 (352)
T cd06174 175 ---------------------------------------------------------------------------RLLLL 179 (352)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 22333
Q ss_pred HHHHHHHhhcccceeecchHHHHhhh-cCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH-HHHHHHHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIAESR-GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA-SIGALMAPM 418 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~~sl-g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~-~l~~~~~~~ 418 (541)
+.+..++....-..+.....++.++. +.+ +.....++..+.+.+|++..|.+.|.. +|.. .+.....+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 252 (352)
T cd06174 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-------GRRRLLLLIGLLLA 252 (352)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHH
Confidence 33333333222222222333333322 332 233455566777788888888774432 2223 444455555
Q ss_pred HHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 009176 419 AGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497 (541)
Q Consensus 419 ~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~ 497 (541)
.++.+......+ ..+++...+.|++.+..++..++.+.|.+..|+.++.+++......+|..+++.+.|.++|..+
T Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~--- 329 (352)
T cd06174 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG--- 329 (352)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---
Confidence 555555554443 4577788999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 498 HNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 498 ~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
|+..|.+.+++++++.++..+
T Consensus 330 ----------~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 330 ----------YGGVFLILAALALLAALLLLL 350 (352)
T ss_pred ----------cchHHHHHHHHHHHHHHHhee
Confidence 799999999998888776553
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=153.23 Aligned_cols=376 Identities=12% Similarity=0.070 Sum_probs=228.3
Q ss_pred HhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccc
Q 009176 39 LLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNS 117 (541)
Q Consensus 39 ~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g 117 (541)
.+++|.++...+..+..+|..+ ++++|.+.||+++|.++.++.+...++.......... .+|.+.+.-++.|.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-----GIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHh
Confidence 6889999999999999999966 8999999999999999999998888887665444332 345666777788899
Q ss_pred cccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeee
Q 009176 118 ICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREI 196 (541)
Q Consensus 118 ~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~ 196 (541)
++...+++.....+.||+ +||++.|+......++..+-..+...+.... .+=...|.+ .++...+..++...+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i-~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-GGWPMIFYV-FGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCeehhh-hhHHHHHHHHHHHHHhcCC
Confidence 988888877777899985 7999999998888888777666665554100 011111211 1111111111111111100
Q ss_pred cCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhh
Q 009176 197 GDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKR 276 (541)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~ 276 (541)
++ ++
T Consensus 223 --p~------~~-------------------------------------------------------------------- 226 (465)
T TIGR00894 223 --PS------IH-------------------------------------------------------------------- 226 (465)
T ss_pred --cc------cC--------------------------------------------------------------------
Confidence 00 00
Q ss_pred hhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccce
Q 009176 277 LINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLV 356 (541)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm 356 (541)
++.+ + ++....++..+ ++.+.. +....+++.++++++|.+++..++.......
T Consensus 227 -----~~~~----~-~~~~~i~~~~~---------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (465)
T TIGR00894 227 -----PCIS----K-FEKKYINSSLQ---------GQKGST--------RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI 279 (465)
T ss_pred -----CCCC----H-HHHHHHHhhcc---------cccCCC--------CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00000000000 000000 0113478999999999999888776544434
Q ss_pred eecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHH----HHHHHHHHHHHHHHHhh-c
Q 009176 357 FLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS----IGALMAPMAGAFMLLLN-E 428 (541)
Q Consensus 357 ~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~----l~~~~~~~~~~~ll~~~-~ 428 (541)
...-+....+ .+|++ +.....++..+...+|++++|++.|...+++ ...|... ..+..+..++..+.... .
T Consensus 280 ~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (465)
T TIGR00894 280 LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK-TLSLTAARKIFNGIGGLGPGIFAYALPYLS 358 (465)
T ss_pred HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555543 46775 3456677888899999999999855432332 2233322 11111111111112222 1
Q ss_pred ccch-hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc--CCCCCCCccccc
Q 009176 429 TNVA-LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE--GHNAHNGKCMGM 505 (541)
Q Consensus 429 ~~~~-l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~--~~~~~~~~C~G~ 505 (541)
.+.. ..+...+.+.+++......-....|..+ ++.|+..|+..+...+|+.+.|.+.|++.|.+ +.
T Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~---------- 427 (465)
T TIGR00894 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNV---------- 427 (465)
T ss_pred CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchH----------
Confidence 2222 2233445555555555544455556654 59999999999999999999999999998865 33
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009176 506 ACYRSTFILWGSFCLFGTFLALILYARTRKFYS 538 (541)
Q Consensus 506 ~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~Y~ 538 (541)
|+..|.+.+++++++.++........+.-+.
T Consensus 428 --~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 428 --WLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 8999999999999998887766544444343
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-13 Score=141.01 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=102.4
Q ss_pred hhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHH
Q 009176 376 LVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTT 454 (541)
Q Consensus 376 ~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~i 454 (541)
..++..+.+.+++...|.+.|.. +|...+........++.+.+....+ ..+++...+.|++.|..++...+.
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRI-------GPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 34455666778888877774421 3333333334444444444443333 345667778999999999999999
Q ss_pred hhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 455 TTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 455 vse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
+.|....++.|..+++......+|..+++.++|.+.|..+ |+.+|.+.+++++++.++.....+|.+
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-------------FRAVFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred HHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-------------hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988653 899999999999999888876544444
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-14 Score=160.03 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=113.4
Q ss_pred cchhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
.+.+|..++...+.....|- ....+..-|.+++.+|++..+...+..+..+|..+ .++.|.+.|++|++.+++++.+.
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34567766666666555543 22355667889999999999999999999999966 88999999999999999998877
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..++-.+...+ ..+|.+.++-++.|.+.+.....+.....+.+|. +||.+.++.-.+..+++.+-..+...+
T Consensus 242 ~~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 242 NGFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554322 1357777778888888776666666666788886 699999999888888777666555444
Q ss_pred h
Q 009176 163 E 163 (541)
Q Consensus 163 ~ 163 (541)
.
T Consensus 315 l 315 (742)
T TIGR01299 315 I 315 (742)
T ss_pred H
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.2e-14 Score=142.58 Aligned_cols=333 Identities=10% Similarity=-0.013 Sum_probs=212.5
Q ss_pred HHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 009176 35 QLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVL 113 (541)
Q Consensus 35 ~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l 113 (541)
......+.|..|...+.....++..+ .++.|.+.||+++|.++.++.+...++...+...-.. ...++|++.+..++
T Consensus 24 ~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 101 (365)
T TIGR00900 24 LYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GGLNIWQVYVLAGI 101 (365)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 34555789999999999999999865 8999999999999999999988888877766554322 22467888888888
Q ss_pred hccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHhhccce
Q 009176 114 AGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPV 192 (541)
Q Consensus 114 ~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ 192 (541)
.|.+.+..+++......+.+|+ +|+.+.|+.-...+++..+-..+...+.. .-+-. ..+.+...+.+++.+....
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~-~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---TLGIK-WAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HhhHH-HHHHHHHHHHHHHHHHHHh
Confidence 8988887777766666688886 69999998888777776655544433321 00000 0000000011111110000
Q ss_pred eeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccccchhhhh
Q 009176 193 VREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFV 272 (541)
Q Consensus 193 ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~ 272 (541)
+++. +
T Consensus 178 ~~~~-------------------------------------------------------------------------~-- 182 (365)
T TIGR00900 178 VRIP-------------------------------------------------------------------------E-- 182 (365)
T ss_pred cccc-------------------------------------------------------------------------c--
Confidence 0000 0
Q ss_pred hhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHHHHHhhc
Q 009176 273 EDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGAT 352 (541)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g 352 (541)
+ ++. + +++. +.+. . ++.....++.++++.+|.+.+..++...
T Consensus 183 -----~---~~~-~------------~~~~----------~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (365)
T TIGR00900 183 -----L---AAS-E------------IQAL----------SNAV--L-----RDTREGIKFVLKNPLLRTLLLLALLFNL 224 (365)
T ss_pred -----C---CCc-c------------cccc----------chhH--H-----HHHHhHHHHHHcCcHHHHHHHHHHHHHH
Confidence 0 000 0 0000 0000 0 0001134678888999988777666544
Q ss_pred ccceee-cchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 009176 353 LGLVFL-NNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNE 428 (541)
Q Consensus 353 ~Glm~I-~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~ 428 (541)
...... +-.....+. +|.+ +.....++.++...+|++..|.++|.. +|...+........++.+++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-------KRMALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHHHHHHhh
Confidence 443333 222333343 5654 345567777888888999888776532 34444443344444444444333
Q ss_pred cc--chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc
Q 009176 429 TN--VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE 493 (541)
Q Consensus 429 ~~--~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~ 493 (541)
.+ ..+++...+.|+++|...+...+++.|.+..++.|+.+|+..+...+|..+++.+.|.++|..
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 32 345667889999999999999999999999999999999999999999999999999999974
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-13 Score=138.29 Aligned_cols=147 Identities=12% Similarity=-0.007 Sum_probs=109.9
Q ss_pred chhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
++|++.+.+........+.. .+...-|++++.+|+|.+|...+.....+|..+ .++.|.+.||+++|.++.+|.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGID-MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred chHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 44555444444433333333 344445888999999999999999999999866 8999999999999999999998888
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHH
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNA 161 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~ 161 (541)
++....... .++|.+++..++.|.+.+...++......+.+|+ +||++.|+.-....+++.+-..+...
T Consensus 82 ~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 82 LSSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765432 2467788888889999888777776666788986 69999998877777776665555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-13 Score=139.70 Aligned_cols=346 Identities=14% Similarity=0.092 Sum_probs=202.5
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
+.+...-|.+++++|+|.+|.+.+..+..+|..+ .++.|.+.||+|+|.++.+|.+...++..+.- .. .++|
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~--~~-----~~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT--LS-----SSYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH--Hh-----CcHH
Confidence 3555677899999999999999999999999966 79999999999999999999988887775443 22 2457
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhH
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLL 184 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~ 184 (541)
++.+..++.|.+.+...........+.+|+ +|+.+.|+.-....++..+-..+...+.
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--------------------- 151 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS--------------------- 151 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh---------------------
Confidence 777777888887664433333333467877 5787777654444444433322222111
Q ss_pred hHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHH--Hhhhcccc
Q 009176 185 ACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVI--CLLAPLVI 262 (541)
Q Consensus 185 v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~--ll~~Pl~i 262 (541)
+.. ++...+.+..+. ..++.+ ....|
T Consensus 152 -------------~~~-------------gwr~~f~~~~~~-----------------------~~~~~~~~~~~lp--- 179 (382)
T PRK10091 152 -------------QEF-------------SWRYTFLLIAVF-----------------------NIAVLASIYFWVP--- 179 (382)
T ss_pred -------------hhc-------------cHHHHHHHHHHH-----------------------HHHHHHHHHHhCC---
Confidence 000 011111110000 000000 00011
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
+ . ++ + + +.+. ++ ..+.++++++|.
T Consensus 180 -------~-----------~--~~------------~-~-----------~~~~---------~~---~~~~~~~~~~~~ 203 (382)
T PRK10091 180 -------D-----------I--RD------------E-A-----------KGGL---------RE---QFHFLRSPAPWL 203 (382)
T ss_pred -------C-----------C--Cc------------c-c-----------ccCH---------HH---HHHHhcChHHHH
Confidence 0 0 00 0 0 0000 01 134678888998
Q ss_pred HHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
++...+++...-....+.+.+.. +..|++ +.....++.++.+.+||++.|.+.|.. +|...+.....++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-------~~~~~~~~~~~~~~ 276 (382)
T PRK10091 204 IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-------SPLRIAAVTDFIIV 276 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-------CchhHHHHHHHHHH
Confidence 88776665322111122223333 345765 356788899999999999999884422 23333333444455
Q ss_pred HHHHHHhh-ccc-chhHHHHHHHHHhhhccch-hhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCC
Q 009176 420 GAFMLLLN-ETN-VALYTSTAIIGVCSGAITS-ISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHN 496 (541)
Q Consensus 420 ~~~ll~~~-~~~-~~l~~~s~liG~~yG~~~~-l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~ 496 (541)
++.+++.. ..+ ....+...+.++.+++... .....+.+.++.++.+...+ .....+|..++|.++|.++|.+.+
T Consensus 277 i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~~~~- 353 (382)
T PRK10091 277 LALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTLGLA- 353 (382)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHcccC-
Confidence 55443322 222 2233334455555443332 33345667777777776432 445678999999999999999887
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 497 AHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 497 ~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
|+..|.+.++++++++.+...+
T Consensus 354 -----------~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 354 -----------YNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777666554444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=143.17 Aligned_cols=382 Identities=12% Similarity=0.051 Sum_probs=227.8
Q ss_pred ccchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 5 SNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 5 ~~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
++.++|+.++++.++.++.++ .++..++.+++.+|+|-.+...+-....++..+ +++.|.+.||+++|.++.+|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~ 85 (400)
T PRK11646 8 RNLGKYFLLIDNMLVVLGFFV--VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM 85 (400)
T ss_pred ccccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence 456789999888888877644 467778889999999999999888888888744 89999999999999999999998
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..++...... . .++|++++..++.|.+.+..+.+....-.+.+|+ +||++.|+......++..+-..+...+
T Consensus 86 ~~~~~~~~~~--~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l 158 (400)
T PRK11646 86 RAAGFATMAI--A-----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL 158 (400)
T ss_pred HHHHHHHHHH--h-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776543 1 2457777777888887766555544444577765 799999987666666655544443322
Q ss_pred hcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 163 ETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 163 ~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
.. . . +...+.+ .+...++
T Consensus 159 ~~-------------------------------~-g----------------~~~~f~~---~~~~~~~----------- 176 (400)
T PRK11646 159 LQ-------------------------------Y-D----------------FRLVCAT---GAVLFVL----------- 176 (400)
T ss_pred HH-------------------------------h-h----------------HHHHHHH---HHHHHHH-----------
Confidence 20 0 0 0000000 0000000
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
..++..+..| + .+. + + .+++
T Consensus 177 -------~~i~~~~~~~----------~-----------~~~--------------~-~------------~~~~----- 196 (400)
T PRK11646 177 -------AAAFNAWLLP----------A-----------YKL--------------S-T------------VRTP----- 196 (400)
T ss_pred -------HHHHHHHhCC----------c-----------ccc--------------c-c------------cchh-----
Confidence 0000000011 0 000 0 0 0000
Q ss_pred CCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhccc-ccccccccchhhhc
Q 009176 323 LGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGF-FGRLIPSLFGYFFS 399 (541)
Q Consensus 323 ~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~-~GRl~~G~~s~~~~ 399 (541)
.++ ++++.++++.||.+.+.++............+....++.+.++ .....++.++... ..+..+++.||..
T Consensus 197 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~- 271 (400)
T PRK11646 197 --VRE--GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRF- 271 (400)
T ss_pred --hHH--HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 011 3467788888886544433221111111222334445444332 2223333333222 2333344444321
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~G 478 (541)
+ .|.. +.....+++++.+++...++ ..+.+...+.|++++...+..++++.|....++.|+-+|+..+...+|
T Consensus 272 ----~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 345 (400)
T PRK11646 272 ----R-LEHR-LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALG 345 (400)
T ss_pred ----c-hhHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHH
Confidence 1 1222 22333445555554444433 234455567888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009176 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYS 538 (541)
Q Consensus 479 s~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~Y~ 538 (541)
..+++.++|.++|..++.. =+..+|.+.+.+++++.++.. ...|++|.-|
T Consensus 346 ~~ig~~l~G~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (400)
T PRK11646 346 GAIGYIGGGWLFDLGKALN---------QPELPWMMLGIIGLITLLALY-WQFSQKRIAR 395 (400)
T ss_pred HHhcccchHHHHHHHhhcC---------CcchHHHHHHHHHHHHHHHHH-HHHhhchHHH
Confidence 9999999999999864310 047788887777777765543 4455555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=141.73 Aligned_cols=352 Identities=15% Similarity=0.039 Sum_probs=211.4
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
+.|+..-|++++.+|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++ ++++..++.= . ..... ..++|
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~-~--~~~~~---~~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFL-FGSLATFAAA-A--GRLLD---PFNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHH-H--HHHHH---hccHH
Confidence 4577888999999999999999999998999866 89999999999988765 4555444331 1 11111 12567
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhH
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLL 184 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~ 184 (541)
.+.+.-++.|.++... .++.....+.||+ +||+++|+.-....+++.+=..+...+-+ .
T Consensus 81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----~--------------- 140 (368)
T TIGR00903 81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT----A--------------- 140 (368)
T ss_pred HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c---------------
Confidence 7888888888888743 3333333577875 79999999887777766655433322210 0
Q ss_pred hHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccccc
Q 009176 185 ACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPL 264 (541)
Q Consensus 185 v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~ 264 (541)
. . ....+.+..+++.- ..++.....|
T Consensus 141 -----------~----------g-------Wr~~f~~~~~l~~~---------------------~~~~~~~~lp----- 166 (368)
T TIGR00903 141 -----------G----------G-------LQLLIIPIAAVAAA---------------------GIILVLAALP----- 166 (368)
T ss_pred -----------c----------c-------hHHHHHHHHHHHHH---------------------HHHHHHHHcC-----
Confidence 0 0 11111110000000 0000000111
Q ss_pred ccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHH
Q 009176 265 GEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYF 344 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf 344 (541)
| + ++.+ .+ . .+. . + .....+++++++++|.+.
T Consensus 167 -----~---~-------p~~~------------~~-~----------~~~-~-~--------~~~~~~~ll~~~~~~~~~ 198 (368)
T TIGR00903 167 -----A---L-------PFQA------------AE-G----------FGF-K-D--------AVKEFGALAGRKDLWIIG 198 (368)
T ss_pred -----C---C-------CCCC------------CC-C----------cch-H-H--------HHHHHHHHHcChhHHHHH
Confidence 0 0 0000 00 0 000 0 0 001257899999999999
Q ss_pred HHHHHhhcccceeecchHHHHhhhcCCcccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHH
Q 009176 345 FVYFSGATLGLVFLNNLGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFML 424 (541)
Q Consensus 345 ~~~~~g~g~Glm~I~n~g~i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll 424 (541)
+.+++....=....+-+.++.++.|++.. .-...++....|-++.++++|..+|++ .|.........++++..++
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g~~~~~d~~~r~~---~r~~~~~~~~~~~a~~~~~ 273 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIGVAVIPDRVARAG---LRSIYIRAAALLIAAFFLA 273 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHHHHHhhHHhhhhh---hHHHHHHHHHHHHHHHHHH
Confidence 88888755433334446777776676532 122233333445555677866554432 2333333233333333333
Q ss_pred Hhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccc
Q 009176 425 LLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCM 503 (541)
Q Consensus 425 ~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~ 503 (541)
+....+ ....+...+.|++.+..++++.++++|.|.+++-|+-.|+.....-+|+..++.+.+.+.. +
T Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~-------- 342 (368)
T TIGR00903 274 LAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---S-------- 342 (368)
T ss_pred HHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---C--------
Confidence 333322 2334445566777777888888999999999999999999999888999999887777762 3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHH
Q 009176 504 GMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 504 G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
.+..|.+.++.++++.+..+
T Consensus 343 ----~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 343 ----AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888777653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=141.33 Aligned_cols=412 Identities=12% Similarity=0.081 Sum_probs=227.8
Q ss_pred chhHHHHHHHHHHHHhcCCc-cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSINGTN-SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~Gt~-Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
+.||..+.+........+-. +..+..-|++++.+|+|+.|.+.+.....+|..+ +++.|.+.||+|+|.+++++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34566555444444443333 3455667999999999999999999888998866 899999999999999999999888
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++....... .++|.+.+..++.|.+.+..+.++.....+.||+ +||.+.|+......+++.+-..+...+.
T Consensus 96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765542 2467777777888888776666665566788987 5999999998888887776666666554
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccC-Cc-chhh-------hHHHHHHHHHH-HHhh
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTR-GG-FVFM-------FFVTIVTGCYA-VLGS 233 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~-~~-f~~~-------~~~~~~~a~yl-~~~~ 233 (541)
+ .-.-...+.++..+.++.++. .+.. |++++.+..++++++ .. +... ....+...... ....
T Consensus 169 ~----~~~w~~~f~~~~~~~~~~~~~---~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (496)
T PRK03893 169 P----VWGWRALFFIGILPIIFALWL---RKNL-PEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFC 240 (496)
T ss_pred c----cCCHHHHHHHHHHHHHHHHHH---HHhC-CCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 2 111122223333443332222 2222 221100000000000 00 0000 00000000000 0000
Q ss_pred cccccccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCC
Q 009176 234 LDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRD 313 (541)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (541)
... .. ..........+++..- -+ ....
T Consensus 241 ~~~-~~----~~~~~~~~~~~~~~~~---~~-------------------------------~~~~-------------- 267 (496)
T PRK03893 241 FAG-NL----QNAAIVAVLGLLCAAI---FI-------------------------------SFMV-------------- 267 (496)
T ss_pred HHh-hh----cchhHHHHHHHHHHHH---HH-------------------------------HHHH--------------
Confidence 000 00 0000000000000000 00 0000
Q ss_pred CCCCCccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccc
Q 009176 314 DDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLI 390 (541)
Q Consensus 314 ~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~ 390 (541)
+.+. . +.+.++.+.+..++....+......+.+..+ .+|++ +....++...+...+|++.
T Consensus 268 -~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 330 (496)
T PRK03893 268 -QSSG--------K--------RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV 330 (496)
T ss_pred -Hhcc--------c--------chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0112333333333333333333345566664 66775 4567888899999999999
Q ss_pred cccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh-cccc--hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccch
Q 009176 391 PSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN-ETNV--ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVN 467 (541)
Q Consensus 391 ~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~-~~~~--~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~n 467 (541)
+|++.|.. +|...+.....+..+..+++.. ..+. .+.+...+.++...+..++.|++++|.++.++.|+.
T Consensus 331 ~g~l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 403 (496)
T PRK03893 331 GGFLGDWL-------GTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG 403 (496)
T ss_pred HHHHHHHh-------cchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence 99885532 2222233233333333222222 1121 122223333444445678999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 468 HNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 468 yg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
+|+......+|+.++|.+.|.++|+.+ |+.+|.+.++.+.+..
T Consensus 404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g-------------~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 404 LGFTYNVGALGGALAPILGALIAQRLD-------------LGTALASLSFSLTFVV 446 (496)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhccCC-------------hHHHHHHHHHHHHHHH
Confidence 999998889999999999999999764 6777766665544433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=140.44 Aligned_cols=371 Identities=11% Similarity=0.061 Sum_probs=222.7
Q ss_pred ccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 009176 30 PAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIF 108 (541)
Q Consensus 30 ~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~ 108 (541)
+..-|++++.+|+|.+|...+..+..+|..+ ++++|.+.||+|+|.++.+|.+...+|....+.+-.. .++|.+.
T Consensus 23 ~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~----~~~~~~l 98 (410)
T TIGR00885 23 NPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI----MNYTLFL 98 (410)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHH
Confidence 3556999999999999999999999999966 8999999999999999999999999998765433221 3578888
Q ss_pred HHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHh
Q 009176 109 LLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACV 187 (541)
Q Consensus 109 ~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l 187 (541)
+..++.|.|.+..++++-....+..|+ +|+...++.-+++++.+.+=..+...+.... .++..... .....|.
T Consensus 99 ~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~-~~~~~~~~-~~~~~~~---- 172 (410)
T TIGR00885 99 VGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN-LPHQSQDV-LDKLSPE---- 172 (410)
T ss_pred HHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cccchhhh-hhhcCHH----
Confidence 888999999998877655544456665 6899999999999998887777776665210 00000000 0000000
Q ss_pred hccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHh-hhcccccccc
Q 009176 188 VTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICL-LAPLVIPLGE 266 (541)
Q Consensus 188 ~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~Pl~ip~~~ 266 (541)
... .....+.......| +....+ ...+.+++ ..+
T Consensus 173 -----------~~~----~~~~~~~~~w~~~f---------l~~a~~--------------~~~~~~~~~~~~------- 207 (410)
T TIGR00885 173 -----------ELS----AIKHSDLASVQTPY---------MIIGAV--------------VLAVALLIMLTK------- 207 (410)
T ss_pred -----------HHH----HHHHHHHHHHHHHH---------HHHHHH--------------HHHHHHHHHHhc-------
Confidence 000 00000111111111 110000 00000000 000
Q ss_pred chhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHH
Q 009176 267 KIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFV 346 (541)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~ 346 (541)
.|+.++ + ++ +++. .++ +.++.++++.+|+..+.
T Consensus 208 --------------~p~~~~------------~-~~----------~~~~--------~~~--~~~~~~~~~~~~~~~l~ 240 (410)
T TIGR00885 208 --------------MPALNH------------S-DA----------KQIS--------FSA--SLSRLARIRHYREGVIA 240 (410)
T ss_pred --------------CCCCCc------------c-cc----------cccc--------chh--hHHHHHhChhHHHHHHH
Confidence 000000 0 00 0000 011 33567889999998777
Q ss_pred HHHhhcccceeecchHHHHhhhcC--Cc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHH
Q 009176 347 YFSGATLGLVFLNNLGQIAESRGC--SG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAF 422 (541)
Q Consensus 347 ~~~g~g~Glm~I~n~g~i~~slg~--~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ 422 (541)
.++-.|.-....+++.+..+..+. ++ ++...+..-..-.+||+++|++.|.. + +|. .+.+..+..++..
T Consensus 241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~-----~~~-~l~i~~~~~~~~~ 313 (410)
T TIGR00885 241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-A-----AHK-VLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----HHH-HHHHHHHHHHHHH
Confidence 777666654555666666655432 21 23345554556679999999884422 1 333 3444444444444
Q ss_pred HHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCcc
Q 009176 423 MLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKC 502 (541)
Q Consensus 423 ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C 502 (541)
++.....+.......+++|++.+..|+..-+...+.+|.+.-..--+++. +. +|+.++|++.|.+.|..+.+..
T Consensus 314 ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~~-~Gga~~p~l~G~~~d~~~~~~~---- 387 (410)
T TIGR00885 314 LGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-AI-IGGGIVPPLQGFIIDMKEIAAA---- 387 (410)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HH-hccchHHHHHHHHHHHhccccc----
Confidence 44444434334456678899999999999999999999666443444444 33 9999999999999996521100
Q ss_pred ccccccHHHHHHHHHH
Q 009176 503 MGMACYRSTFILWGSF 518 (541)
Q Consensus 503 ~G~~CY~~tF~i~~~~ 518 (541)
|. ++.+|++...+
T Consensus 388 -~~--~~~~~~~~~~~ 400 (410)
T TIGR00885 388 -PA--VNTSFILPLLC 400 (410)
T ss_pred -Cc--cchHHHHHHHH
Confidence 00 78899886443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=138.09 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=204.6
Q ss_pred cccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 009176 29 FPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHI 107 (541)
Q Consensus 29 f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l 107 (541)
...+-|++++++|+|.+|...+..+..+|..+ .++.|.+.||+|++.++.+|.+...+++..... .+ ++|.+
T Consensus 25 ~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~--~~-----~~~~l 97 (381)
T PRK03633 25 LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL--MV-----GFWSW 97 (381)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-----cHHHH
Confidence 34557888889999999999999999999866 889999999999999999999998888866432 22 35666
Q ss_pred HHHHHHhccccccccceeeeeecccC-CCCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhH
Q 009176 108 FLLTVLAGNSICWINTVCYVVTIKNF-PFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLAC 186 (541)
Q Consensus 108 ~~~~~l~g~g~~~~nTa~lvt~v~NF-P~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~ 186 (541)
-+..++.|.+.+...........+.. |++||.+.|+-.....++.++-..+...+. +. +
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~-----~~---~------------ 157 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS-----TE---L------------ 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cc---c------------
Confidence 66677878777654433222223344 458999888766665555554433332221 00 0
Q ss_pred hhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccccccc
Q 009176 187 VVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGE 266 (541)
Q Consensus 187 l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~ 266 (541)
.+.. .+. ..+ ......++.. .
T Consensus 158 ------~~~~-----------------~~~----~~~-----------------------------~~~~~~~~~~--~- 178 (381)
T PRK03633 158 ------MSVL-----------------PWV----TGL-----------------------------VLAAILPLLF--T- 178 (381)
T ss_pred ------cchH-----------------HHH----HHH-----------------------------HHHHHHHHHH--h-
Confidence 0000 000 000 0000001000 0
Q ss_pred chhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHH
Q 009176 267 KIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFV 346 (541)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~ 346 (541)
+ .+ ++ + + ++ + ++.+.++.++++.||.....
T Consensus 179 --~-------~~--~~---~--------------~-----------~~-~----------~~~~~~~~~~~~~~~~~~~~ 208 (381)
T PRK03633 179 --R-------IL--NQ---Q--------------A-----------EN-H----------DSTSIWPMLKLRQARLGVNG 208 (381)
T ss_pred --c-------cc--CC---C--------------C-----------CC-C----------CCCCHHHHHHhcchHHHHHH
Confidence 0 00 00 0 0 00 0 00123567788888865433
Q ss_pred HHH-hhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHH
Q 009176 347 YFS-GATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFM 423 (541)
Q Consensus 347 ~~~-g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~l 423 (541)
..+ +...+..+ +-+....+..|.+ +....+++..+.+..||+..|.+.|.. +|...+.....++.++.+
T Consensus 209 ~~~~~~~~~~~~-~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 209 CIISGIVLGSLY-GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRF-------GRLLVLRVQVFVVILGSI 280 (381)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-------CcHHHHHHHHHHHHHHHH
Confidence 222 11122111 2234455556765 345678888899999999988774422 333444433444444433
Q ss_pred HHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccc
Q 009176 424 LLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCM 503 (541)
Q Consensus 424 l~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~ 503 (541)
++. .....+....+.|++.+..++...+.+.|....++.+.-.+...++..+|..++|.++|+++|..+
T Consensus 281 ~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--------- 349 (381)
T PRK03633 281 AML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--------- 349 (381)
T ss_pred HHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 332 122233455677877777777777888899988888887888888899999999999999999764
Q ss_pred cccccHHHHHHHHHHHHHHHH
Q 009176 504 GMACYRSTFILWGSFCLFGTF 524 (541)
Q Consensus 504 G~~CY~~tF~i~~~~~~~g~~ 524 (541)
++..|++.+.+.+++.+
T Consensus 350 ----~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 350 ----DNLLFIMIASVSFIYLL 366 (381)
T ss_pred ----ccHHHHHHHHHHHHHHH
Confidence 68899988777765543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=140.83 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=133.5
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC----------cccchhhhhhhcccccccccccchhhhcc
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS----------GTSSLVSLSSSFGFFGRLIPSLFGYFFSR 400 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~----------~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~ 400 (541)
.++.+|++.||.+++..++....-..+........++.|++ .....+++.++...++++..|.+.|..
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-- 278 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-- 278 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 46788999999888777665332111111222223344432 336677888888888998888774422
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhhcc--c---chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh-hh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLNET--N---VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV-AN 474 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~---~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~-~a 474 (541)
+|.+.+....+.+.++..++.... . ..+++..++.|+++|...+..+..++|.++.++.|+.+|+.. ..
T Consensus 279 -----g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 279 -----GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 444555555555555544443322 1 235667788999999988999999999999999999999997 67
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 475 IPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
..+|+.++|.++|+++|..++.+..+ |+.+|.+.+++++++.++.++..+++++
T Consensus 354 ~~lg~~iGp~l~G~l~~~~g~~~~~~-------~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 354 NGFGSLLGYILSGVMVEKMFAYGTFD-------WQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HhhHHHHHHHHHHHHHHHhccccCCc-------hHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 89999999999999999865311011 8999999999988888888877665554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=137.12 Aligned_cols=379 Identities=11% Similarity=0.005 Sum_probs=207.4
Q ss_pred CccchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHH
Q 009176 4 NSNILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGST 82 (541)
Q Consensus 4 ~~~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~ 82 (541)
+.+++.|..++...+. ..|....++..++.+++++|+|.+|...+.....++..+ .++.|.+.||+++|.++.+|.+
T Consensus 4 ~~~~~~~~l~~~~~~~--~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~ 81 (395)
T PRK10054 4 SLRRSTSALLASSLLL--TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAIT 81 (395)
T ss_pred CCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHH
Confidence 3445556555544443 445555666778889999999999999988888777744 8999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHH
Q 009176 83 LGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNA 161 (541)
Q Consensus 83 ~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~ 161 (541)
...+++.... +.+ ++|++.++.++.|.+....+++.-.-..+.+|+ +||++.|+.-....+++++-..+...
T Consensus 82 ~~~~~~~~~~--~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 82 AFASGFIAIP--LVN-----NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHHHHHH--HHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876543 222 235544444444433332222222222366655 68888887666555544433333222
Q ss_pred HhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccC
Q 009176 162 IETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKT 241 (541)
Q Consensus 162 ~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~ 241 (541)
+.. . .. +..|.. .++ ..++
T Consensus 155 l~~-------------------------------~-g~------------~~~f~~---~~~----~~~i---------- 173 (395)
T PRK10054 155 LVM-------------------------------Q-SI------------NLPFWL---AAI----CSAF---------- 173 (395)
T ss_pred HHH-------------------------------h-cc------------CcHHHH---HHH----HHHH----------
Confidence 110 0 00 000110 000 0000
Q ss_pred CCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccC
Q 009176 242 LLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYH 321 (541)
Q Consensus 242 ~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (541)
..++..+..| + + +++ + ++ ++ .
T Consensus 174 --------~~i~~~~~~~---------~-------~---~~~---------------~-~~----------~~-~----- 194 (395)
T PRK10054 174 --------PLVFIQIWVQ---------R-------S---EKA---------------I-AT----------ET-G----- 194 (395)
T ss_pred --------HHHHHHHHHh---------c-------c---ccc---------------c-cc----------ch-h-----
Confidence 0000000011 0 0 000 0 00 00 0
Q ss_pred CCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhh-cCCcccchhhhhhhcccccccccccc-hhhhc
Q 009176 322 GLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESR-GCSGTSSLVSLSSSFGFFGRLIPSLF-GYFFS 399 (541)
Q Consensus 322 ~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~sl-g~~~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~ 399 (541)
+..+.++++++++||.+.+..++.....-.+.....+..... +.+.....++++-..+..+.+...+. .+..+
T Consensus 195 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 269 (395)
T PRK10054 195 -----SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLN 269 (395)
T ss_pred -----hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHc
Confidence 001236788899999887776664433222222333333222 22212223333444444444444333 34443
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhc-ccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNE-TNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~-~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~ 477 (541)
|+ +|...+...++++.++.+.+... ++. .+.+...+.|++++...+...+.+.|.-..+.-|+-+|... ...+
T Consensus 270 ~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~ 344 (395)
T PRK10054 270 AA----NIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWL 344 (395)
T ss_pred cC----CchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHH
Confidence 32 33333333444455554444432 232 34556778888888777777788888888888888888655 3447
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 478 GSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
|..++|.++|.++|+-+ +...|.+.+....++.++.+ ++.|.|+
T Consensus 345 G~~~Gp~~~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 388 (395)
T PRK10054 345 GAAINPLVSGVILTTLP-------------PWSLFVILALAIVAAWLLML-KGMRARP 388 (395)
T ss_pred HHHHHHHHHHHHHHHcC-------------hhhHHHHHHHHHHHHHHHHH-hccccCc
Confidence 89999999999999874 57788777666555555544 5555555
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=135.67 Aligned_cols=353 Identities=14% Similarity=0.005 Sum_probs=199.8
Q ss_pred chhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
++.|+..+.....+..+. ....+..--|++++.+|+|+++...+-.+..+|..+ .++.|.+.||+++|.++.++.+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 444655555555554322 233333344779999999999999998888899866 789999999999999999998887
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCC-CceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFD-RQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~-RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++....... .++|++.+..++.|.+.+...........++||++ |+.+.|+.....+++..+-..+...+.
T Consensus 89 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 89 ILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665432 24577777777778777655554544455889875 666677665555544433333322221
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
+ ..+-..-..+.+.... ++++
T Consensus 162 ~---~~~w~~~~~~~~~~~~-~~~~------------------------------------------------------- 182 (406)
T PRK15402 162 H---VLPWRGMFVLFAALAA-LSFF------------------------------------------------------- 182 (406)
T ss_pred H---ccCccHHHHHHHHHHH-HHHH-------------------------------------------------------
Confidence 0 0000000000000000 0000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
......| + ++ ++ +++ +.+.+
T Consensus 183 ---------~~~~~~~----------~-----------~~-~~------------~~~-----------~~~~~------ 202 (406)
T PRK15402 183 ---------GLWRAMP----------E-----------TA-GR------------VGE-----------KLSLK------ 202 (406)
T ss_pred ---------HHHHhCC----------C-----------CC-cc------------ccc-----------cccHH------
Confidence 0000000 0 00 00 000 00000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHH-hhhcCCcc--cchhhhhhhcccccccccccchhhhcc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCSGT--SSLVSLSSSFGFFGRLIPSLFGYFFSR 400 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~~~--~~~Vsl~Si~N~~GRl~~G~~s~~~~~ 400 (541)
+...+.++.++++.+|.+.+.+++..............+. +.+|.++. ........+...+|++..|.+.|..
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-- 278 (406)
T PRK15402 203 --ELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-- 278 (406)
T ss_pred --HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 0001246788999999987776554322111212223333 34566532 3333445556778888888774421
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhh-----ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLN-----ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~-----~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
+|...+....++++++.+++.. ..+ ..+.+..++.|++.|..++.....+-..- .++.|.-.+++.+.
T Consensus 279 -----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~ 352 (406)
T PRK15402 279 -----PLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGML 352 (406)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHH
Confidence 3333333344444444443322 112 23556778889999887766555443332 37889999999999
Q ss_pred hhhhHHHHHHHHHHHhhhcCC
Q 009176 475 IPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~ 495 (541)
..+|..+++.++|++||..+.
T Consensus 353 ~~~~~~~g~~~~~~l~~~~~~ 373 (406)
T PRK15402 353 SMLIFTVGIELSKHAYLGGGN 373 (406)
T ss_pred HHHHHHHHHHHHHhcccCCch
Confidence 999999999999999998876
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-12 Score=134.61 Aligned_cols=363 Identities=13% Similarity=0.089 Sum_probs=218.6
Q ss_pred cchhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
.++-|..+++.+....+.++ .|.-...-|++++.+|+|.+|...+..+..++..+ +++.|.+.||++++.++.++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 44567776666665444444 34444567889999999999999888788887755 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAI 162 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~ 162 (541)
..+++...-. . .++|.+.+.-++.|.+.+.....+.....+-||+ +||.+.|+.-+..+++..+-..+...+
T Consensus 95 ~~~~~~~~~~--~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l 167 (394)
T PRK10213 95 LTLSCLLVSF--A-----NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL 167 (394)
T ss_pred HHHHHHHHHH--H-----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887655422 2 2467778877888888776655555555688875 699999988877776655544444333
Q ss_pred hcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 163 ETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 163 ~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
.+ . . . ....+.+..++
T Consensus 168 ~~-----~-------------------------~----------g-------w~~~f~~~~~l----------------- 183 (394)
T PRK10213 168 GE-----L-------------------------I----------G-------WRNVFNAAAVM----------------- 183 (394)
T ss_pred Hh-----h-------------------------c----------C-------HHHHHHHHHHH-----------------
Confidence 20 0 0 0 00000000000
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
..+..+++... .| ++ + + + +++.
T Consensus 184 ------~~~~~l~~~~~--~p-----------------~~-----~----------~-~------------~~~~----- 205 (394)
T PRK10213 184 ------GVLCIFWIIKS--LP-----------------SL-----P----------G-E------------PSHQ----- 205 (394)
T ss_pred ------HHHHHHHHHHH--CC-----------------CC-----C----------c-c------------cccc-----
Confidence 00000000000 00 00 0 0 0 0000
Q ss_pred CCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHH-HHhhhcCCc--ccchhhhhhhcccccccccccchhhhc
Q 009176 323 LGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQ-IAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 323 ~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
..+.++.++++.+|...+..++..+..........+ +.+.+|++. .....+...+.+.+|++..|...|
T Consensus 206 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~--- 277 (394)
T PRK10213 206 -----KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILK--- 277 (394)
T ss_pred -----hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 012356788999998766544433322222233333 345567753 345666677778888877665533
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhh
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~G 478 (541)
| + +|...+....+..+...++.....+ ..+++...+.|++++......++.+.+.. .++.+...++.+....+|
T Consensus 278 r-~---~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg 352 (394)
T PRK10213 278 R-S---VKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL-ADQAEKAGSIQVAVIQLA 352 (394)
T ss_pred c-c---chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 1 1 3333222222222222232222323 34666778899999999999998888776 466667777777777888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 479 s~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
..+++.++|+++|..+ ++..|...+.++++..
T Consensus 353 ~~~G~~l~G~l~~~~g-------------~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 353 NTCGAAIGGYALDNIG-------------LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHhccC-------------hhhHHHHHHHHHHHHH
Confidence 8999999999999754 5777777666554443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-12 Score=135.67 Aligned_cols=432 Identities=12% Similarity=0.023 Sum_probs=228.0
Q ss_pred cchhHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
++.||...+.+...-+..-..+.+..+-|.+.+.+|+|+.+...+..+..++..+ .++.|.+.|++++|.++.++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~ 85 (471)
T PRK10504 6 DSVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLF 85 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3344443333333333344455666788899999999999998888888888755 888999999999999988887777
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.+++...-+ . .++|++.+..++.|.+.+...........+.+|+ +||++.|+.-....+++.+-..+...+.
T Consensus 86 ~~~~~~~~~--~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 86 TLGSLFCAL--S-----GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHH--h-----CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777754322 1 2457777777888887775555555555578887 6899999887776776666555554444
Q ss_pred cCCCCCc-ccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCC
Q 009176 164 TSSPNKR-AKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTL 242 (541)
Q Consensus 164 ~~~~~~d-~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~ 242 (541)
. ... ...|... +.. ..+..+... ... |..+. .+++.| +... .....+.-.+.....+....
T Consensus 159 ~---~~gw~~~f~~~-~~~-~~l~~~~~~--~~~-~~~~~---~~~r~~---~~~~--~~~~~~~~~~~~~~~~~~~~-- 220 (471)
T PRK10504 159 E---YASWHWIFLIN-IPV-GIIGAIATL--MLM-PNYTM---QTRRFD---LSGF--LLLAVGMATLTLALDGSKGL-- 220 (471)
T ss_pred h---hccHHHHHHHH-HHH-HHHHHHHHH--HhC-CCccc---cCCCCC---hHHH--HHHHHHHHHHHHHHhcCCcC--
Confidence 1 011 1122221 111 111111111 111 11110 011111 1111 11111111111111111100
Q ss_pred CCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCC
Q 009176 243 LPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHG 322 (541)
Q Consensus 243 ~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (541)
...........+.....++... .++. + .+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~----------------------~------------~~------- 249 (471)
T PRK10504 221 GLSPLAIAGLVAVGVVALLLYL----------LHAR----------------------N------------NN------- 249 (471)
T ss_pred CcchHHHHHHHHHHHHHHHHHH----------HHHh----------------------c------------CC-------
Confidence 0001000000000000000000 0000 0 00
Q ss_pred CCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCCc--ccchhhhhhhcccccccccccc-hhhh
Q 009176 323 LGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCSG--TSSLVSLSSSFGFFGRLIPSLF-GYFF 398 (541)
Q Consensus 323 ~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~~--~~~~Vsl~Si~N~~GRl~~G~~-s~~~ 398 (541)
++.-..+++++++|+......++......+...-..+..| .+|+++ .........+....++.+.|.+ |++
T Consensus 250 ----~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~- 324 (471)
T PRK10504 250 ----RALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF- 324 (471)
T ss_pred ----CCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0011124788899998877666654332222222333444 356543 3344455555566677776765 333
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHhhcc--c-c-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 399 SRSKHMIPSPASIGALMAPMAGAFMLLLNET--N-V-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 399 ~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~-~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
+|...+....+.+++..+++.... + . .+.+...+.|++.|..++...+++.+.+..++.|..+++..+.
T Consensus 325 -------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 325 -------GYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred -------CchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 333333333333343333332221 1 1 2344566778899988999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCC-CCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 475 IPIGSFLFGYLAALVYHKEGHNA-HNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~~~-~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
.-+|..+++.++|.+.|..+..+ .+....-...+..+|...+.++++++++
T Consensus 398 ~~~g~~ig~~i~g~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T PRK10504 398 MQLSMSIGVTIAGLLLGLFGQQHVSVDSGATHTVFMYTYLCMALIIALPALI 449 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888754321 1112211122555566655554444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=139.34 Aligned_cols=363 Identities=12% Similarity=-0.055 Sum_probs=215.0
Q ss_pred ccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHH-hhhccccchHH
Q 009176 28 NFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLF-LTHTISHLSYA 105 (541)
Q Consensus 28 ~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~-~~~~i~~~~~w 105 (541)
....+-|.+.+.++.|..|...+.....++..+ .++.|.+.||++++.++.++.+...+++.++... +. ...++|
T Consensus 35 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~ 111 (417)
T PRK10489 35 LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL---PEPSLL 111 (417)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc---CCCcHH
Confidence 345566888888899999999999999999866 7899999999999999988888777777655432 22 123567
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhH
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLL 184 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~ 184 (541)
.+.+..++.|.+.+...++......+.+|+ +|+++.|+.-...+++..+=..+...+... .+-...|++ .....+
T Consensus 112 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~--~~~~~~ 187 (417)
T PRK10489 112 AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA--GGVAWNYGL--AAAGTF 187 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHH--HHHHHH
Confidence 766666777777665555555555578876 588888876555555444333333222200 000000000 000000
Q ss_pred hHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccccc
Q 009176 185 ACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPL 264 (541)
Q Consensus 185 v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~ 264 (541)
+++ ++++..|.
T Consensus 188 ~~~-----------------------------------------------------------------~~~~~l~~---- 198 (417)
T PRK10489 188 ITL-----------------------------------------------------------------LPLLRLPA---- 198 (417)
T ss_pred HHH-----------------------------------------------------------------HHHHhCCC----
Confidence 000 00000110
Q ss_pred ccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHH
Q 009176 265 GEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYF 344 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf 344 (541)
. + +++ + ++ +++.+ ......+..++++.+|.++
T Consensus 199 --~-~-----------~~~---------------~-~~----------~~~~~--------~~~~~~~~~~~~~~~~~~~ 230 (417)
T PRK10489 199 --L-P-----------PPP---------------Q-PR----------EHPLR--------SLLAGFRFLLASPVVGGIA 230 (417)
T ss_pred --C-C-----------CCC---------------c-cc----------ccchH--------HHHHHHHHHHcChHHHHHH
Confidence 0 0 000 0 00 00000 0001234567778887776
Q ss_pred HHHHHhhcccceeecchHHHHhh-hcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHH
Q 009176 345 FVYFSGATLGLVFLNNLGQIAES-RGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGA 421 (541)
Q Consensus 345 ~~~~~g~g~Glm~I~n~g~i~~s-lg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~ 421 (541)
+...+....+ .+........+. +|++. .....++..+.+.+|++.+|.++|. . +|...+....+.++++
T Consensus 231 ~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~---~----~~~~~l~~~~~~~~~~ 302 (417)
T PRK10489 231 LLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS---A----RPGLLMLLSTLGSFLA 302 (417)
T ss_pred HHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc---c----CcchHHHHHHHHHHHH
Confidence 5544432211 122233445555 67653 4456677788888888888877542 1 1222333333445555
Q ss_pred HHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCC
Q 009176 422 FMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNG 500 (541)
Q Consensus 422 ~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~ 500 (541)
++++....+ ..+.+...+.|+..|...+...+++.|.+..++.|+..|+......+|..+++.+.|.+.|.-+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g------ 376 (417)
T PRK10489 303 VGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT------ 376 (417)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc------
Confidence 554444333 2345566778888777777778899999999999999999999999999999999999999865
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 501 KCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 501 ~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
++.+|.+.+.+.++..++......++|+
T Consensus 377 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 377 -------PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4777777766655544444444444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=138.78 Aligned_cols=416 Identities=10% Similarity=-0.033 Sum_probs=242.7
Q ss_pred ccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 28 NFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 28 ~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
..+..-|++++.+|.|.+|...+..+..++..+ .++.|.+.||+++|.++.+|.+...++......+ ..+|.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 92 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLEL 92 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHHH
Confidence 345678999999999999999999999999866 7889999999999999999999888887665422 24677
Q ss_pred HHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHh
Q 009176 107 IFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLA 185 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v 185 (541)
+.+..++.|.+.+...+.+...-.+.+|+ +||.+.|+.-....+++.+-..+...+.. ...-...+.......++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----~~~w~~~f~~~~~~~~~ 168 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE----NYHWRWIFLINVPIGII 168 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc----CcCceehhhhhhHHHHH
Confidence 78888888998887777777666789975 79999999888888877776666655541 11112222222222222
Q ss_pred HhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhH-HHHHHHHhhhcccccc
Q 009176 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKN-LIGIVICLLAPLVIPL 264 (541)
Q Consensus 186 ~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~Pl~ip~ 264 (541)
.++...+..+. +++ +++++............+...+......+.... ....... ........+... .
T Consensus 169 ~~~~~~~~~~~-~~~-------~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~- 236 (485)
T TIGR00711 169 VVVVAFFILPR-DKP-------AASENFDFLGLLLLSVGLGSLLYGLSEGPERGW-FDSNEILILSITGLVAIIAF--V- 236 (485)
T ss_pred HHHHHHHHcCC-ccc-------cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC-CCchHHHHHHHHHHHHHHHH--H-
Confidence 22222222221 111 111111111110111111111111000000000 0000000 000000000000 0
Q ss_pred ccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHH
Q 009176 265 GEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYF 344 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf 344 (541)
.+ + ... ++.....+++++++||...
T Consensus 237 ---~~-----------------------------~--------------~~~---------~~~~~~~~~~~~~~~~~~~ 261 (485)
T TIGR00711 237 ---VW-----------------------------E--------------LTD---------DNPLVDLRLFKYRNFTIGC 261 (485)
T ss_pred ---HH-----------------------------H--------------HcC---------CCCccCHHHHcCCChHHHH
Confidence 00 0 000 0011124678888888876
Q ss_pred HHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHH
Q 009176 345 FVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGA 421 (541)
Q Consensus 345 ~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~ 421 (541)
+..++....-......+.+..+. .|++ +.....+...+...+|++++|.+.|. .+|...+......++++
T Consensus 262 ~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-------~~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 262 VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-------IDPRKLVTIGLILYAVG 334 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCcHHHHHHHHHHHHHH
Confidence 65554332222222334445544 5665 34556667778888899998887332 13444444444555555
Q ss_pred HHHHh--hcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCC
Q 009176 422 FMLLL--NET--N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHN 496 (541)
Q Consensus 422 ~ll~~--~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~ 496 (541)
.+++. ... + ..++....+.|+++|..+......+.+.++.++.|+..|+..+...+|+.+++.++|.++|++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~~~ 414 (485)
T TIGR00711 335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRTQF 414 (485)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 111 2 235556778999999988777788888899999999999999999999999998999888743210
Q ss_pred ---------C-C-CCc--c------------------c-------cccccHHHHHHHHHHHHHHHHHHHH
Q 009176 497 ---------A-H-NGK--C------------------M-------GMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 497 ---------~-~-~~~--C------------------~-------G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
. . ... . . =...|+..|++.+.+++++.+++++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~f~~~~~~~~~~~~~~~~ 484 (485)
T TIGR00711 415 HHSQLTETINPVNPNFLSGYSQLAALGNPEQQVYALIAQQITLHAFSIAINEIFWMATLLFVSGLILIWF 484 (485)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 000 0 0 1336788899888888888887764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=141.19 Aligned_cols=326 Identities=19% Similarity=0.157 Sum_probs=203.6
Q ss_pred cccchH-HHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 29 FPAYSS-QLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 29 f~~ys~-~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
+...-| .+++++|+|.+|.+.+..+..++..+ +++.|.+.||+|+|.++.+|.+...++......+ .++|.
T Consensus 15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~ 87 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWL 87 (352)
T ss_dssp HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHH
Confidence 333445 88999999999999999999998855 9999999999999999999999999994444422 23577
Q ss_pred HHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHh
Q 009176 107 IFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLA 185 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v 185 (541)
+.+..++.|.+.+..+++....-.+.+|+ +|+.+.|+.-...+++..+-..+...+.. .-+-..-....+....+.
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHH
T ss_pred Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhh
Confidence 88889999999988888888888899998 89999999999999988877777665541 011111111112111111
Q ss_pred HhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccc
Q 009176 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLG 265 (541)
Q Consensus 186 ~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~ 265 (541)
.+...+..+. ++++ ++ ++
T Consensus 165 -~il~~~~~~~-~~~~-----~~-~~------------------------------------------------------ 182 (352)
T PF07690_consen 165 -AILFILFLPE-PPPP-----RE-RE------------------------------------------------------ 182 (352)
T ss_dssp -HHHHHCCC----STT-----TT---------------------------------------------------------
T ss_pred -hhhHhhhhhh-cccc-----cc-cc------------------------------------------------------
Confidence 1111011111 0000 00 00
Q ss_pred cchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccC--CHHhhhhchhHHHH
Q 009176 266 EKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEI--GAMLMLQRVDFWLY 343 (541)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--t~~q~l~~~~Fwll 343 (541)
+++ +++.+. +.+. .+++..+++.+|.+
T Consensus 183 ---------------------------------~~~-----------~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 211 (352)
T PF07690_consen 183 ---------------------------------SPK-----------ESESKK-------PKPLKPGFKSLFKNPVLWIL 211 (352)
T ss_dssp ---------------------------------SST-----------TTT--H-------HHCCCH-CTHHHHHHCCHHH
T ss_pred ---------------------------------ccc-----------cccccc-------ccccccccccccccchhhhh
Confidence 000 000000 0001 34677788888844
Q ss_pred HHHHHHhhcccceeecchHHH-HhhhcCC-c--ccchhhhhhhcccccccccccchhhhcccCCCCChhH-HHH-HHHHH
Q 009176 344 FFVYFSGATLGLVFLNNLGQI-AESRGCS-G--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA-SIG-ALMAP 417 (541)
Q Consensus 344 f~~~~~g~g~Glm~I~n~g~i-~~slg~~-~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~-~l~-~~~~~ 417 (541)
+....+....-......+... .+.+|.+ . .....++..+....+++..|.+.|.. + +|.. .+. ....+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 212 LIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-G-----RRRRLLIAILLLIL 285 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----cHHHHHHHHHHHHH
Confidence 444444321211223333333 3456666 2 33457777888888899888774432 1 1222 221 12222
Q ss_pred HHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 418 MAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 418 ~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
..+.........+ ...++...+.|+++|..++...+.+.|.++.++.|+.+|+..+...+|+.++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 286 GALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2222222222222 34666788999999999999999999999999999999999999999988875
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-12 Score=132.19 Aligned_cols=125 Identities=20% Similarity=0.147 Sum_probs=95.4
Q ss_pred cCCccccccchHH-HHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009176 23 NGTNSNFPAYSSQ-LKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTIS 100 (541)
Q Consensus 23 ~Gt~Y~f~~ys~~-lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~ 100 (541)
..+.|.++.+-|+ +++.+|+|.+|...+.....+|..+ .++.|.+.||+|+|.++.+|.+...++.......-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~---- 89 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ---- 89 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh----
Confidence 4455789999996 9999999999999999999999866 899999999999999999999999998876654321
Q ss_pred cchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHH
Q 009176 101 HLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKL 154 (541)
Q Consensus 101 ~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaai 154 (541)
++|.+.+..++.|.+.... +.+.....+.||+ +||.+.++..+...++..+
T Consensus 90 --~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 141 (366)
T TIGR00886 90 --SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGV 141 (366)
T ss_pred --hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHH
Confidence 4566666666666664432 3444444578875 7999999876554444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=137.83 Aligned_cols=377 Identities=13% Similarity=0.095 Sum_probs=218.4
Q ss_pred CccccccchHHHHH-HhCCChhhHHHHHHhhhhhcccc-hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009176 25 TNSNFPAYSSQLKQ-LLSLSQLQLNNLAFASDAGKLFG-WISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHL 102 (541)
Q Consensus 25 t~Y~f~~ys~~lk~-~l~~sq~~l~~l~~~~~~G~~~G-~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~ 102 (541)
.-+.+|.-.+.+++ .+|+|.+|+..+...-.++..++ ++.|.++||+|+|.++.++.+...++....-.+++... .
T Consensus 49 ~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~--~ 126 (462)
T PRK15034 49 VWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN--T 126 (462)
T ss_pred HHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC--C
Confidence 34567777888876 79999999999988888877775 99999999999999999999998888876666555432 4
Q ss_pred hHHHHHHHHHHhccccccccceeeeeecccCCCC-CceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchh
Q 009176 103 SYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFD-RQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 103 ~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~-RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~ 181 (541)
++|.+.+.-++.|.+.. ...+++...-+.||++ ||++.|+.-+. |-.|...+++..-.
T Consensus 127 s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~-G~~G~~l~~~l~p~------------------- 185 (462)
T PRK15034 127 PFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGL-GNLGVSVMQLVAPL------------------- 185 (462)
T ss_pred CHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHH-HhhHHHHHHHHHHH-------------------
Confidence 68888888888888733 4445555555779975 99999998644 43444444332211
Q ss_pred hhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccc
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLV 261 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ 261 (541)
++.+. .....|..... ....+...... ... .|..... .+ +++..++.+
T Consensus 186 --~i~~~---l~~~~G~~~~~----~~~g~~~~~~~---~~~---~~~~~~i--------------v~-~i~~~~~~~-- 233 (462)
T PRK15034 186 --VIFVP---VFAFLGVNGVP----QADGSVMSLAN---AAW---IWVPLLA--------------IA-TIAAWSGMN-- 233 (462)
T ss_pred --HHHHH---HHHHhcccccc----ccccchHHHHH---HHH---HHHHHHH--------------HH-HHHHHHhCC--
Confidence 11000 00001111100 00001111110 000 0100000 00 000000000
Q ss_pred cccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHH
Q 009176 262 IPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFW 341 (541)
Q Consensus 262 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fw 341 (541)
|++ +++.+ . ...++.+|+++-|
T Consensus 234 ------------------------~~~-------------------------~~~~~-------~--~~~~~vlk~~~~W 255 (462)
T PRK15034 234 ------------------------DIA-------------------------SSRAS-------I--ADQLPVLQRLHLW 255 (462)
T ss_pred ------------------------Ccc-------------------------ccccC-------H--HHHHHHhCCCchh
Confidence 000 00000 0 1246789999999
Q ss_pred HHHHHHHHhhcccceeecchHHHHhhhcCCccc--chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 342 LYFFVYFSGATLGLVFLNNLGQIAESRGCSGTS--SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 342 llf~~~~~g~g~Glm~I~n~g~i~~slg~~~~~--~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
++-+.+++.-|+=...-+-+++..++ .+++.. ....+.++...++|.++|+++|.. . +|... ....+.+.
T Consensus 256 llslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRi---G---~~~vl-~~~~i~~~ 327 (462)
T PRK15034 256 LLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKF---G---GVRVT-LINFIFMA 327 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhc---C---chHHH-HHHHHHHH
Confidence 98777766544322122233333333 233222 223445677889999999995532 1 23322 22222222
Q ss_pred HHH-H-HHhhcc----cchhHH-----HHHHHHHhhhccchhhHHHhhh--hcCC---------------Ccccchhhhh
Q 009176 420 GAF-M-LLLNET----NVALYT-----STAIIGVCSGAITSISVTTTTE--LFGT---------------KNFSVNHNIV 471 (541)
Q Consensus 420 ~~~-l-l~~~~~----~~~l~~-----~s~liG~~yG~~~~l~P~ivse--~FG~---------------k~fg~nyg~~ 471 (541)
+.. . .+..+. +..++. .....|++-|+.|-+.|.+-.+ .-.. |+-|.-=|++
T Consensus 328 i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v 407 (462)
T PRK15034 328 IFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFI 407 (462)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHH
Confidence 221 1 111221 112222 2233466666777666665542 1111 2677888888
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 472 VANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 472 ~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
...-++|+++.|++.|..+|.+++ |..+|++..+.+++.++++.+.+.|+.
T Consensus 408 ~a~G~~Ggf~~p~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 408 SAIGAVGGFFIPQAFGMSLNMTGS------------PVGAMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred HHHHHcccchhhHHHHHHHHHcCC------------cHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 899999999999999999999998 999999999999999999988877664
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=126.66 Aligned_cols=175 Identities=11% Similarity=0.127 Sum_probs=112.6
Q ss_pred hhhchhHHHHHHHHHHhhcccceeecchHHHH-hhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHH
Q 009176 334 MLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS 410 (541)
Q Consensus 334 ~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~ 410 (541)
.++++++|.+++..++..+...++...+.... +.+|.++ .....++..+....+++.+|.+.|.. +|...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-------g~~~~ 267 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-------GKRRL 267 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------cchhH
Confidence 55677788776665544332222223333333 4456653 33455555566677888888774422 22233
Q ss_pred HHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHH
Q 009176 411 IGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
+....+...+..+++....+ ..+++...+.|+++|..++...+.+.|.+.. +.++..++......+|..+++.++|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~ 346 (375)
T TIGR00899 268 MLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33233333333333322223 3355566788999999888888999999864 568888988888889999999999999
Q ss_pred hhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 490 YHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 490 yD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+|..+ |+..|.+.+.+++++.++.+.+
T Consensus 347 ~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 347 AERWS-------------YHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHhcc-------------chhHHHHHHHHHHHHHHHHhee
Confidence 98753 7999999999888888776543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=130.28 Aligned_cols=377 Identities=10% Similarity=0.056 Sum_probs=215.1
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
-.-+.+-|++|+.+|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+...+|..+...... ..++|
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~----a~~~~ 118 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE----IMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh----cCCHH
Confidence 3445678999999999999999999999999966 999999999999999999999999999876543221 23578
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCCCCc-eehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhH
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQ-VAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLL 184 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG-~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~ 184 (541)
.+.+..++.|.|.+..++++-....+..|++|+ ...++.-+.+++++.+=..+...+.....+......+
T Consensus 119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~--------- 189 (438)
T PRK10133 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL--------- 189 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhh---------
Confidence 888888999999888777765554455666655 4678877777776655444433221000000000000
Q ss_pred hHhhccceeeeecCCCcccccccccccC-CcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccc
Q 009176 185 ACVVTSPVVREIGDHVQESSSSSRRRTR-GGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIP 263 (541)
Q Consensus 185 v~l~~~~~ir~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip 263 (541)
.+.. .... ...+..- ......|.... ++..+ .+++++..+ .|
T Consensus 190 --------~~l~-~~~~----~~w~~~~~~~w~~~f~~~~--~v~~~--------------------~~~~~~~~~--~p 232 (438)
T PRK10133 190 --------DKMT-PEQL----SAYKHSLVLSVQTPYMIIV--AIVLL--------------------VALLIMLTK--FP 232 (438)
T ss_pred --------hccC-hhhH----HHHHHHHHHHHHHHHHHHH--HHHHH--------------------HHHHHHHhc--CC
Confidence 0000 0000 0000000 00111110000 00000 000000000 00
Q ss_pred cccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHH
Q 009176 264 LGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLY 343 (541)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwll 343 (541)
+. + + ++++ +++..+ .-.+.++.+++++||..
T Consensus 233 -------------------~~---~----------~-~~~~--------~~~~~~--------~~~~~~~ll~~~~~~~~ 263 (438)
T PRK10133 233 -------------------AL---Q----------S-DNHS--------DAKQGS--------FSASLSRLARIRHWRWA 263 (438)
T ss_pred -------------------CC---C----------c-cccc--------cccccc--------hhhhHHHHHhCchHHHH
Confidence 00 0 0 0000 000000 00124578899999987
Q ss_pred HHHHHHhhcccceeecchHHH-Hh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 344 FFVYFSGATLGLVFLNNLGQI-AE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 344 f~~~~~g~g~Glm~I~n~g~i-~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
.+..++..+.-....+-.... -| ..|++ +.....+...+...+||+.+|.+.|.. +|...+.....+.+
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-------g~~~~l~~~~~~~~ 336 (438)
T PRK10133 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-------APHKVLAAYALIAM 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CHHHHHHHHHHHHH
Confidence 666555442211112222322 23 35665 456788899999999999999884322 33333333333333
Q ss_pred HHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCC
Q 009176 420 GAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHN 499 (541)
Q Consensus 420 ~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~ 499 (541)
+.+++.....+........+.|++.|..++..-+...|.+|. +-++-=+++.+.. +|+.+++.+.|.+.|..+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~---- 410 (438)
T PRK10133 337 ALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGN---- 410 (438)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccc----
Confidence 333333222222234466789999999999999999999985 4566666665433 6788889999999997653
Q ss_pred CccccccccHHHHHHHHHHHHHHH
Q 009176 500 GKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 500 ~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
-+.+|++...+.+...
T Consensus 411 --------~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 411 --------IPTAELIPALCFAVIF 426 (438)
T ss_pred --------hHHHHHHHHHHHHHHH
Confidence 4788877655444333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=135.94 Aligned_cols=120 Identities=13% Similarity=-0.039 Sum_probs=91.0
Q ss_pred HHHHHH-----hCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 009176 34 SQLKQL-----LSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHI 107 (541)
Q Consensus 34 ~~lk~~-----l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l 107 (541)
+.+++. .+.+.++...+.....+|..+ .++.|.+.||+|+|.++.++.+...++-.+..++.... +...+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 118 (502)
T TIGR00887 40 KMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS-PKSVMATL 118 (502)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc-cchHHHHH
Confidence 555553 245667778888889999866 88899999999999999999888888766555443221 11236788
Q ss_pred HHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHH
Q 009176 108 FLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKL 154 (541)
Q Consensus 108 ~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaai 154 (541)
++.-++.|.+.+..++.+.....+.||. .||++.++.-....++..+
T Consensus 119 ~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 8888999999998888888888899997 6999999887766655433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-11 Score=126.43 Aligned_cols=364 Identities=14% Similarity=0.022 Sum_probs=199.9
Q ss_pred ccccccchHHHHHHhCC--ChhhHHHHHHhhh-----hhcc-cchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 26 NSNFPAYSSQLKQLLSL--SQLQLNNLAFASD-----AGKL-FGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTH 97 (541)
Q Consensus 26 ~Y~f~~ys~~lk~~l~~--sq~~l~~l~~~~~-----~G~~-~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~ 97 (541)
.|.++..++.++++... +.++...+-.... ++.. .+++.|.+.||+|+|.++.+|.+...++......+-+-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 88 (394)
T TIGR00883 9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY 88 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCh
Confidence 45677788888988765 2333333322222 2222 36889999999999999999999999888777654322
Q ss_pred c-cccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchh
Q 009176 98 T-ISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYL 175 (541)
Q Consensus 98 ~-i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fL 175 (541)
. ......+.+++.-++.|.+.+...+++.....+.+|+ +||.+.++......++..+-..+...+..
T Consensus 89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~----------- 157 (394)
T TIGR00883 89 ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY----------- 157 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1 0111123466667888888877766666666688876 68888777655555544433333222110
Q ss_pred hhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHH
Q 009176 176 LFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVIC 255 (541)
Q Consensus 176 llla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~l 255 (541)
.. ... . .+...+...+.+..+. .++.
T Consensus 158 -------------------~~-~~~------~--~~~~~w~~~~~~~~~~--------------------------~~~~ 183 (394)
T TIGR00883 158 -------------------LL-GDD------A--LLEWGWRIPFLVSAVL--------------------------VLIG 183 (394)
T ss_pred -------------------hc-CHH------H--hhccchHHHHHHHHHH--------------------------HHHH
Confidence 00 000 0 0000111111110000 0000
Q ss_pred hhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhh
Q 009176 256 LLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLML 335 (541)
Q Consensus 256 l~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l 335 (541)
+.... .. ++ .++.+ +.++ +++ .+..+.++.+
T Consensus 184 ~~~~~--~~----~~---~~~~~-----------------~~~~--------------~~~---------~~~~~~~~~~ 214 (394)
T TIGR00883 184 LYLRR--NL----EE---TPVFE-----------------KAQE--------------KHK---------KKRGPIRETL 214 (394)
T ss_pred HHHHH--hc----CC---ChhHH-----------------HHHh--------------ccc---------cccCCHHHHH
Confidence 00000 00 00 00000 0000 000 0112345566
Q ss_pred hchh--HHHHHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHH
Q 009176 336 QRVD--FWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS 410 (541)
Q Consensus 336 ~~~~--Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~ 410 (541)
+++. +|......++......+....+..+. +.+|.+ +.....++..+.+.++++..|.+.|... +|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------~~~~~ 288 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG------RRPVL 288 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------hHHHH
Confidence 6655 77766665554333222333445555 345664 3445677788889999999888844321 22222
Q ss_pred HHHHHHHHHHHH-HHHhh--cccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh-hhhhhhhHHHHHHH
Q 009176 411 IGALMAPMAGAF-MLLLN--ETNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV-VANIPIGSFLFGYL 485 (541)
Q Consensus 411 l~~~~~~~~~~~-ll~~~--~~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~-~~a~~~Gs~l~~~l 485 (541)
+.........+. ++... ..+. .+++...+.|+++|..++...+.+.|.+..++-++.+|+. .++..+|+.++|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~ 368 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHH
Confidence 222222122221 11111 1222 3445667889999999999999999999999999999984 46677888899999
Q ss_pred HHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHH
Q 009176 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLF 521 (541)
Q Consensus 486 aG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~ 521 (541)
.|.++|..+. ++..++.....+++
T Consensus 369 ~g~l~~~~g~------------~~~~~~~~~~~~l~ 392 (394)
T TIGR00883 369 AAALVAMTGD------------WYAIGYYLAALALI 392 (394)
T ss_pred HHHHHHHcCc------------chhHHHHHHHHHHH
Confidence 9999999876 56666666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=123.31 Aligned_cols=173 Identities=8% Similarity=0.015 Sum_probs=123.2
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCCh
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R 407 (541)
+.++.+|+++||.+.+..++..+.-..+.....+..++.|.++ .....++..+...++.+.+|.+ . +| .++
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l---~-~r---~g~ 269 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKL---F-QN---CSA 269 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHH---H-hh---CCH
Confidence 3578999999999988877765555455566666677788764 3344455555555555555433 2 11 144
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh-hhhhhhHHHHHHH
Q 009176 408 PASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV-ANIPIGSFLFGYL 485 (541)
Q Consensus 408 ~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~-~a~~~Gs~l~~~l 485 (541)
...+.+..+...+..++.++..+ ..+++...+-|++||..+......+.+. ..++.++-.++.. ++.++|..+++.+
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 270 RDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665555 3467788999999999999999999998 7777788888865 6788999999999
Q ss_pred HHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHH
Q 009176 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTF 524 (541)
Q Consensus 486 aG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~ 524 (541)
+|++||+.+ + ..|.+++.+.+++++
T Consensus 349 ~G~l~~~~g-------------~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 349 AGFIYPTLG-------------A-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHhcc-------------H-HHHHHHHHHHHHHHH
Confidence 999999863 3 678888887776543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-11 Score=124.90 Aligned_cols=179 Identities=9% Similarity=0.087 Sum_probs=115.8
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeec-chHHHHhhh----cCC--cccchhhhhhhcccccccccccchhhhcccC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLN-NLGQIAESR----GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSK 402 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~-n~g~i~~sl----g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~ 402 (541)
+.++.+|++++|.+.+..++. ....+... -.....+.. +.+ ......++..+.+..+.+..|.+.|..
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~---- 281 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGV-ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI---- 281 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 467899999998765544332 22222111 122222222 111 123455666677777777777663322
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhh-hhhhhhhhHH
Q 009176 403 HMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNI-VVANIPIGSF 480 (541)
Q Consensus 403 ~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~-~~~a~~~Gs~ 480 (541)
+|...+.+..+++++...+.....+ ..+++...+-|++++......-..+.|.++.+.-++.++. ...+..+|+.
T Consensus 282 ---g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~ 358 (396)
T TIGR00882 282 ---GAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI 358 (396)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH
Confidence 3333344444444555444444333 4466677788888877777677778889999998888877 4577889999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+++.++|+++|..+ |+.+|++.+.+.+++.+++...
T Consensus 359 ~~~~l~G~l~~~~G-------------~~~~f~~~~~~~~i~~~~~~~~ 394 (396)
T TIGR00882 359 FLSTLAGNMYDSIG-------------FQGAYLVLGCIVLLFTLISVFT 394 (396)
T ss_pred HHHHhHHHHHHhcc-------------cHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999763 8999999999988888776543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-11 Score=128.30 Aligned_cols=378 Identities=12% Similarity=-0.020 Sum_probs=216.7
Q ss_pred cccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 009176 29 FPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHI 107 (541)
Q Consensus 29 f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l 107 (541)
.+.=-|++.+.+|.|++|.+.+..+-.++... .++.|.+.|++|++.++.+|.+...+|..+.-.+ .++|++
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-------~~~~~l 97 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-------PTASWL 97 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-------CCHHHH
Confidence 34446899999999999999999999999854 7899999999999999999999888888765432 246777
Q ss_pred HHHHHHhccccccccceeeeeecccCC--CCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhH-
Q 009176 108 FLLTVLAGNSICWINTVCYVVTIKNFP--FDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLL- 184 (541)
Q Consensus 108 ~~~~~l~g~g~~~~nTa~lvt~v~NFP--~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~- 184 (541)
.+.-++.|.|.+...++....-.+.|+ ++||++.|+.....+++..+=..+...+.. .-+ -...++ ...|..
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~---~~g-wr~~f~-i~~~~~~ 172 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE---HFY-WGSVFL-INVPIVL 172 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCC-hHHHHH-HHHHHHH
Confidence 887788888887655555544557884 479999999999999988777777666641 111 112222 222222
Q ss_pred hHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccccc
Q 009176 185 ACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPL 264 (541)
Q Consensus 185 v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~ 264 (541)
+.++......|. ++++ ++ ++..+... +....+..++...+.+.... ....... ..+ +.........
T Consensus 173 ~~~~l~~~~l~~-~~~~-----~~--~~~d~~g~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~l~~ 238 (495)
T PRK14995 173 VVMGLTARYVPR-QAGR-----RD--QPLNLGHA--LMLIVAILLLVYSAKTALKG-FLSLWVT-SLT--LLTGALLLGL 238 (495)
T ss_pred HHHHHHHHhCCC-CCCC-----CC--CCCChHhH--HHHHHHHHHHHHHHHhcccc-CCchHHH-HHH--HHHHHHHHHH
Confidence 222222121121 1111 11 11111111 11111111111122111100 0001000 000 0000000000
Q ss_pred ccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHH
Q 009176 265 GEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYF 344 (541)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf 344 (541)
..+ . |.+ . ++..-..++++++.|+...
T Consensus 239 --f~~------~----e~~------------------------------~-----------~~p~~~~~lf~~~~~~~~~ 265 (495)
T PRK14995 239 --FIR------T----QLA------------------------------A-----------SRPMIDMRLFTHRIILSGV 265 (495)
T ss_pred --HHH------H----Hhc------------------------------C-----------CCCCcCHHHhCCcccHHHH
Confidence 000 0 000 0 0001115678888888776
Q ss_pred HHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHH
Q 009176 345 FVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGA 421 (541)
Q Consensus 345 ~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~ 421 (541)
+..++....-......+.+.-|. .|++ ++.......++...++....|.+.|.. +|...+....++++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-------g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-------GLRLVATGGMALSALS 338 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CchHHHHHHHHHHHHH
Confidence 66555432211111222333343 5665 455667777888888999988874321 2223333334444444
Q ss_pred HHHHhhc---cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 422 FMLLLNE---TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 422 ~ll~~~~---~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
.+++... .+ ...++..++.|+..|..+......+.+....++.+...++..+...+|+.+++.+.|.++|.
T Consensus 339 ~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 339 FYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333221 12 23556778899999998888888888999999999999999999999999998888888764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.4e-11 Score=140.77 Aligned_cols=369 Identities=13% Similarity=-0.007 Sum_probs=212.2
Q ss_pred ccchHHHHHHhCCChhh--HHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 30 PAYSSQLKQLLSLSQLQ--LNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 30 ~~ys~~lk~~l~~sq~~--l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
....+.+...++.++++ ...+..+..++..+ ++++|.+.|++|++.++.++.+...++.....++... .++|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHH
Confidence 44555666667776555 56667777777744 8999999999999999988877666665554433322 13688
Q ss_pred HHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHh
Q 009176 107 IFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLA 185 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v 185 (541)
+.+..++.|.+++...++....-.+.+|+ +||.+.|+.-....++..+=..+...+.. .
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~------~-------------- 165 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE------S-------------- 165 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH------h--------------
Confidence 88888899999998888877777788986 69999998777666654444333333220 0
Q ss_pred HhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccc
Q 009176 186 CVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLG 265 (541)
Q Consensus 186 ~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~ 265 (541)
+ . ... .++ ....+.....+.+..+ .+.+++.+..|
T Consensus 166 ------~---~-~~~------~~~-~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~------ 200 (1146)
T PRK08633 166 ------V---N-GNT------PSE-ILGRIAPAGLVLLAVA----------------------VLGLIFAYRLP------ 200 (1146)
T ss_pred ------h---c-ccc------ccc-cccchHHHHHHHHHHH----------------------HHHHHHHhcCc------
Confidence 0 0 000 000 0000110000000000 00000000011
Q ss_pred cchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHH
Q 009176 266 EKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFF 345 (541)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~ 345 (541)
+ . ++... ...+ + +.... .......++++++++.+|...+
T Consensus 201 ----~---~-------~~~~~---------~~~~-~-----------~~~~~------~~~~~~~~~~l~~~~~~~~~~~ 239 (1146)
T PRK08633 201 ----K---V-------PAAAP---------EVFD-K-----------KKYLF------PKLLWRNLKLLRSDRVLWLAII 239 (1146)
T ss_pred ----C---C-------CCCCc---------cccc-c-----------ccccc------HHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 00000 0000 0 00000 0001123567888899998877
Q ss_pred HHHHhhcccceeecchHHHHh-hhcCCcc---cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHH
Q 009176 346 VYFSGATLGLVFLNNLGQIAE-SRGCSGT---SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGA 421 (541)
Q Consensus 346 ~~~~g~g~Glm~I~n~g~i~~-slg~~~~---~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~ 421 (541)
..++......++...+....+ .+|.+.. ..+.++..+...+|.++.|.++|.. +|...+.+..+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-------~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-------IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------eEccchhHHHHHHHHH
Confidence 766665555444455555554 4566533 4566667777777877777764421 2222222333334444
Q ss_pred HHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCC
Q 009176 422 FMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNG 500 (541)
Q Consensus 422 ~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~ 500 (541)
.+++....+ ..+.+...++|+++|..+....+++.+.+..++-|+.+++..+...+|..+++.+.+.+....-.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~----- 387 (1146)
T PRK08633 313 LFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS----- 387 (1146)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 444433333 34566778999999999999999999999999999999999988888887766665555432222
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 501 KCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 501 ~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
+...|++.+.++++..++.+
T Consensus 388 -------~~~~~~~~~~~~~~~~~~~~ 407 (1146)
T PRK08633 388 -------PAGLFYLIALVTLIGTLYTL 407 (1146)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 45667777666655554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-11 Score=127.06 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=109.6
Q ss_pred hhhhchhHHHHHHHHHHhhcccce-eecchHHH-HhhhcCCccc--chhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 333 LMLQRVDFWLYFFVYFSGATLGLV-FLNNLGQI-AESRGCSGTS--SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~g~Glm-~I~n~g~i-~~slg~~~~~--~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
+.++++.+|.+-+...+....+.- ........ .+.+|+++.. ....+..+...+|+++.|+++|.. +|.
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-------grr 316 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-------GRR 316 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cch
Confidence 466777777764433222222211 12222222 2345665321 223345566778888888885533 222
Q ss_pred HHHHHHHHHHHHHHHHH--hh-ccc-ch-hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh-hhhhhhHHHH
Q 009176 409 ASIGALMAPMAGAFMLL--LN-ETN-VA-LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV-ANIPIGSFLF 482 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~--~~-~~~-~~-l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~-~a~~~Gs~l~ 482 (541)
..+....++++++.+.+ .. ..+ .. +.+...+.|+++|..++..+++++|.|+.|+-++-.|+.+ ++..+|+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~ 396 (438)
T PRK09952 317 RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFT 396 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHH
Confidence 22222222223322211 11 112 22 3334556689999999999999999999998888888754 4556888889
Q ss_pred HHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 009176 483 GYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYA 531 (541)
Q Consensus 483 ~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~ 531 (541)
|.+.|+++|..+.. |+..|.+.+++++++.+..+.+..
T Consensus 397 p~i~g~l~~~~~~~-----------~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 397 PFIAAALVTYFGGS-----------WHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HHHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999976432 889999998888888887766543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=121.73 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=91.7
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
+.+.+..+-|++++.+|+|.++...+.....+|..+ .++.|.+.||+|+|.++.+|.+...+++.....+ .+
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~ 90 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ET 90 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------Cc
Confidence 344455889999999999999999888888888866 6899999999999999999999988888776532 23
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHH
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSA 152 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSa 152 (541)
+|.+.+.-++.|.+.+.....+.....+.+|+ +|+++.|+.-+...+++
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~ 140 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP 140 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 46666666677777766555555555577865 79999887655444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=122.57 Aligned_cols=138 Identities=15% Similarity=0.037 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHH
Q 009176 9 QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIG 87 (541)
Q Consensus 9 rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~G 87 (541)
.|+.+..++...+...+.+.|...-|++++.+|.|.+|...+..+..+|..+ +++.|.+.||+++|.++.+|.+...++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 5555555555555555555555555778999999999999999999999866 899999999999999999998888777
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCC-CceehhhHHHhhhhHHH
Q 009176 88 YGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFD-RQVAVGITSSYLGLSAK 153 (541)
Q Consensus 88 Y~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~-RG~a~gllk~~~GLSaa 153 (541)
....... .++|.+++..++.|.+.+...........+.||++ |+.+.+..-...+++++
T Consensus 85 ~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (401)
T PRK11043 85 SLGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA 144 (401)
T ss_pred HHHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 6655431 24577777777767665433222211223668775 45444444333334333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=122.51 Aligned_cols=111 Identities=10% Similarity=0.033 Sum_probs=79.5
Q ss_pred ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 26 NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 26 ~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
.+.+...-|++.+.+|+|..|...+..+..++..+ .++.|.+.||+++|.++.+|.+...++....... .++
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~ 96 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSL 96 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence 33444445788999999999999999999999866 7999999999999999999988888877665432 245
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCCC-CCceehhh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGI 143 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gl 143 (541)
|.+++..++.|.+.+.....+.....+.+|+ +|+.+.++
T Consensus 97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSL 136 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777777888877664333322222344554 45555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=121.92 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=106.7
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccce-eecchHHHHh-hhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLV-FLNNLGQIAE-SRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMI 405 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm-~I~n~g~i~~-slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~ 405 (541)
+.+++++++.+|++.+.+.+....+.. ...-+.+..+ ..|++. .....++..+...+++...|++.|...
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~g------ 307 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIG------ 307 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 467888999999877666554322222 2233455443 467653 345566667777788888888754321
Q ss_pred ChhHHHHHHHHHHHHH---HHH-Hhhcccchh-HHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh-hhhhH
Q 009176 406 PSPASIGALMAPMAGA---FML-LLNETNVAL-YTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN-IPIGS 479 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~~---~ll-~~~~~~~~l-~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a-~~~Gs 479 (541)
+|...+ ...++.++. .+. .....+... .....+.+++.|...+..++.++|+|..|+-++-+|+.+.. ..+.+
T Consensus 308 rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g 386 (432)
T PRK10406 308 RRTSML-CFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFG 386 (432)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHH
Confidence 122222 221111111 111 111112121 12223334455556677889999999999999999998743 33323
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
-..|.+.+ +.|..+. |...|+..++.++++.+..+.+..|.|
T Consensus 387 ~~~p~~~~-~l~~~g~------------~~~~~~~~~~~~~i~~~~~~~l~~~~~ 428 (432)
T PRK10406 387 GSAEYVAL-SLKSIGM------------ETAFFWYVTLMAVVAFLVSLMLHRKGK 428 (432)
T ss_pred hHHHHHHH-HHHHhCC------------CcHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 33566677 4476666 777788888888888777776555444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=124.39 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=94.3
Q ss_pred Cccccccch---HHHHHHh--------CCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHH
Q 009176 25 TNSNFPAYS---SQLKQLL--------SLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQY 92 (541)
Q Consensus 25 t~Y~f~~ys---~~lk~~l--------~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~ 92 (541)
-.|..+.++ +.+++.+ +++..|...+.....+|..+ .++.|.+.||+|+|.+++++.+...++.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~ 103 (479)
T PRK10077 24 FGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA 103 (479)
T ss_pred cCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 345555555 5567776 88999999999999999966 89999999999999999999998887776655
Q ss_pred HHh----hhcccc-chHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHH
Q 009176 93 LFL----THTISH-LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKL 154 (541)
Q Consensus 93 l~~----~~~i~~-~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaai 154 (541)
++- .-..++ ..++.+.++=++.|.+.+.....+...-.+.+|+ +||.+.|+.-....++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~ 171 (479)
T PRK10077 104 WPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV 171 (479)
T ss_pred hhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence 421 100011 1234455666788888887666666666688986 6999999876666555544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-10 Score=119.49 Aligned_cols=147 Identities=11% Similarity=-0.049 Sum_probs=93.1
Q ss_pred CCCccchhHHHHHHHHHHH-HhcCC-ccccccchHHHHHHhCCChhhHHHHH-Hhhhhhc-----cc-chhhhhhccccc
Q 009176 2 PLNSNILQWLSLVGAIWLQ-SINGT-NSNFPAYSSQLKQLLSLSQLQLNNLA-FASDAGK-----LF-GWISGVASVYLP 72 (541)
Q Consensus 2 ~~~~~~~rw~~l~as~~v~-~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~-~~~~~G~-----~~-G~~~Gll~d~~p 72 (541)
|-.++-+||.. .++.++. ....- ...++.+.|++++.++.+++|...+. .....+. -+ .++.|.+.||+|
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G 84 (434)
T PRK15075 6 PAASRESKARA-ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVG 84 (434)
T ss_pred CCCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Confidence 44456677874 4444443 22221 23478899999999999988865442 2222222 23 578899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhh
Q 009176 73 LWLVLLIGSTLGLIGYGLQYLFLTHTISHLS---YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYL 148 (541)
Q Consensus 73 p~~vlliGa~~~~~GY~~~~l~~~~~i~~~~---~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~ 148 (541)
+|.++.++.+...++....-. ........ .+++++.-++.|.+.+...+++.....+.+|+ +||++.++.....
T Consensus 85 rr~~l~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~ 162 (434)
T PRK15075 85 RRKGLIVTLSIMASGTLLIAF--VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQ 162 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHH
Confidence 999999998877777555432 11111000 11356667788888877666665566688986 6999998765544
Q ss_pred hhH
Q 009176 149 GLS 151 (541)
Q Consensus 149 GLS 151 (541)
.++
T Consensus 163 ~~g 165 (434)
T PRK15075 163 QVA 165 (434)
T ss_pred HHH
Confidence 333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=124.85 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=99.3
Q ss_pred chHHHHh-hhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHH-HHHHHH--HHhhccc-ch
Q 009176 360 NLGQIAE-SRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAP-MAGAFM--LLLNETN-VA 432 (541)
Q Consensus 360 n~g~i~~-slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~-~~~~~l--l~~~~~~-~~ 432 (541)
-+.++.+ .+|++. .....+...+...+|++.+|.++|.. +|...+....+. .+.+.. ......+ ..
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-------grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-------GRRPFVILGSVALFVLAIPAFILINSNVIGL 344 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3444443 457653 33455566677888999988885532 344433332221 222221 1222222 34
Q ss_pred hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHH
Q 009176 433 LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTF 512 (541)
Q Consensus 433 l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF 512 (541)
++++..+.|+++|..++..++++.|+|..+.-|+-.|+.+....+++.++|.+.|++.|..++ .+..+
T Consensus 345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~------------~~~~~ 412 (490)
T PRK10642 345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQN------------LMMPA 412 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------chHHH
Confidence 556667889999999999999999999999988888875433445567778899999987665 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 009176 513 ILWGSFCLFGTFLALILYARTRKFY 537 (541)
Q Consensus 513 ~i~~~~~~~g~~lsl~l~~r~r~~Y 537 (541)
.+....++++.+..+++..+.|+.+
T Consensus 413 ~~~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 413 YYLMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCC
Confidence 5666667777766665533333334
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-10 Score=119.74 Aligned_cols=172 Identities=9% Similarity=-0.032 Sum_probs=110.4
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCCh
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R 407 (541)
+.++.+|++.||.+.+..++....-..+.+......++.|+++ .....++..+.+..+++..|...| | .++
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~---r----~~~ 269 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFR---R----WSA 269 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH---H----CCH
Confidence 4689999999998876655543222223334445556667653 344555555555556555554422 1 245
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh-hhhhhhHHHHHHH
Q 009176 408 PASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV-ANIPIGSFLFGYL 485 (541)
Q Consensus 408 ~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~-~a~~~Gs~l~~~l 485 (541)
...+....+.++++.+++....+ ..+++..++.|+++|......-..+.+.- .++.++.+++.. .+..+|..+++.+
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 270 RDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666655554444 34666788899999987777777777764 555688888775 6667788899999
Q ss_pred HHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 486 aG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
+|++||+.+. ..|++++++.++++
T Consensus 349 ~G~l~~~~g~--------------~~~~~~~~~~~~~~ 372 (382)
T PRK11128 349 SGFLYQHLGA--------------GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHhccH--------------HHHHHHHHHHHHHH
Confidence 9999998642 36776666655443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=119.26 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=96.4
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
..+...-|++++.+|+|.+|...+..+..+|..+ .++.|.+.||++++.++.+|.+...++....... ..+|
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~ 80 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTID 80 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 3445566788899999999999999999998866 8999999999999999999998888887776542 2356
Q ss_pred HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHH
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSA 158 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i 158 (541)
.+.+..++.|.+.+..+........+.+|+ +||++.|+.-...++++.+-..+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888777666655556678886 59999998766666655544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-10 Score=134.56 Aligned_cols=378 Identities=10% Similarity=-0.074 Sum_probs=217.7
Q ss_pred hhHHHHHHHHHHHHhcCCccccc--cch-HHHHHHhCCChhhH-HHHHHhhhhhc-ccchhhhhhccccchHHHHH--HH
Q 009176 8 LQWLSLVGAIWLQSINGTNSNFP--AYS-SQLKQLLSLSQLQL-NNLAFASDAGK-LFGWISGVASVYLPLWLVLL--IG 80 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~Gt~Y~f~--~ys-~~lk~~l~~sq~~l-~~l~~~~~~G~-~~G~~~Gll~d~~pp~~vll--iG 80 (541)
+||.-+..+-++...+-..+.+. .+. .++....+.++.++ ..+..+.-++. .+++++|.+.||++++.++. ..
T Consensus 11 ~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~ 90 (1140)
T PRK06814 11 RRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKF 90 (1140)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHH
Confidence 44555555554444332223222 111 23444444444443 44444555665 45999999999999876531 12
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHH
Q 009176 81 STLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAV 159 (541)
Q Consensus 81 a~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~ 159 (541)
+...+.+.... .... .++|++.+..++.|.+++++..+....-...||+ .|+.+.|+.-....++..+-..+.
T Consensus 91 ~~~~~~~~~~~-~~~~-----~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~ 164 (1140)
T PRK06814 91 AEIGIAALAIY-GFHL-----NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIG 164 (1140)
T ss_pred HHHHHHHHHHH-HHHH-----hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 22222222221 1111 2578899999999999998888777777788877 689999998888888777776666
Q ss_pred HHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccc
Q 009176 160 NAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKL 239 (541)
Q Consensus 160 ~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~ 239 (541)
..+.. ..+...++ ..+....++.++...+++.. + +
T Consensus 165 g~l~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~------~-------------------------------- 199 (1140)
T PRK06814 165 GLATI---SGNFVILV-ALLMGIAVLGWLASLFIPKT---G------N-------------------------------- 199 (1140)
T ss_pred HHHHh---ccccHHHH-HHHHHHHHHHHHHHhhCCCC---C------C--------------------------------
Confidence 55541 00111111 11111111111111000000 0 0
Q ss_pred cCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCc
Q 009176 240 KTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGI 319 (541)
Q Consensus 240 ~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (541)
.+. + .+ .+.+.
T Consensus 200 ---------------------------------------------~~~-----------~-~~---------~~~~~--- 210 (1140)
T PRK06814 200 ---------------------------------------------AAP-----------D-LK---------IDRNI--- 210 (1140)
T ss_pred ---------------------------------------------CCC-----------C-Ce---------eccch---
Confidence 000 0 00 00000
Q ss_pred cCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchh
Q 009176 320 YHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGY 396 (541)
Q Consensus 320 ~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~ 396 (541)
....-..++...+++.+|.+.+.+++....+.++...+..+.+. +|.+ ......+..++...+|.++.|.+.+
T Consensus 211 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~ 286 (1140)
T PRK06814 211 ----IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE 286 (1140)
T ss_pred ----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000135677788899998887776655544444456666654 5664 3566788888889999999887743
Q ss_pred hhcccCCCCChhHHHHHHHHHHHHHHHHHhhc--------------------cc-chhHHHHHHHHHhhhccchhhHHHh
Q 009176 397 FFSRSKHMIPSPASIGALMAPMAGAFMLLLNE--------------------TN-VALYTSTAIIGVCSGAITSISVTTT 455 (541)
Q Consensus 397 ~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~--------------------~~-~~l~~~s~liG~~yG~~~~l~P~iv 455 (541)
-.. .+....... +.+++..+.+... .+ ..+++..+++|++.|......++++
T Consensus 287 ~~~------~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 359 (1140)
T PRK06814 287 GRI------TLLYVPIGA-LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAAL 359 (1140)
T ss_pred Cce------eeeeehHHH-HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 211 111111111 1111111111110 22 3456677889999999999999999
Q ss_pred hhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 456 TELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 456 se~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
.+.+..++.|..+|+..+...+|..+++.+.|.++|...+ +...|++.+.++++.+++.+.
T Consensus 360 ~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 420 (1140)
T PRK06814 360 QAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFS------------IPWIILFIALANLIVAILILR 420 (1140)
T ss_pred HhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccC------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665 777777776665555544433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=115.34 Aligned_cols=357 Identities=20% Similarity=0.166 Sum_probs=222.2
Q ss_pred cccccchHHHHHHhCCChhhHHHHHHhh-hhhcccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 009176 27 SNFPAYSSQLKQLLSLSQLQLNNLAFAS-DAGKLFGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYA 105 (541)
Q Consensus 27 Y~f~~ys~~lk~~l~~sq~~l~~l~~~~-~~G~~~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w 105 (541)
+.+|.-.+++|+.+|+|..|...+...- -.|..+=++-|++.|++|||.+-.++.+...+=-.++-.+.+. +++|
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~----~~~~ 106 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY----PSTW 106 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC----CchH
Confidence 4567788999999999999998875544 4666779999999999999999888887766654444444433 4568
Q ss_pred HHHHHHHHhccccccccceeeeeec-ccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhh
Q 009176 106 HIFLLTVLAGNSICWINTVCYVVTI-KNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPL 183 (541)
Q Consensus 106 ~l~~~~~l~g~g~~~~nTa~lvt~v-~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~ 183 (541)
++-++-++.|.+.+ |=++-.+++ +.||+ ++|+|.||-- .|=.|.-.+|+.. |.
T Consensus 107 ~ll~~gll~G~~Ga--sFav~m~~~s~~fP~~~qG~AlGI~g--~GN~G~av~q~~~---------------------P~ 161 (417)
T COG2223 107 QLLVIGLLLGLAGA--SFAVGMPNASFFFPKEKQGLALGIAG--AGNLGVAVAQLVA---------------------PL 161 (417)
T ss_pred HHHHHHHHHhcccc--eehcccccccccCChhhhhHHHHHhc--cccccHHHHHHHH---------------------HH
Confidence 87777777776554 224444444 78887 5799999744 5555555555432 22
Q ss_pred HhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccc
Q 009176 184 LACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIP 263 (541)
Q Consensus 184 ~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip 263 (541)
++...+.-..| .+..+|+....+. .++..+.
T Consensus 162 v~~~~g~~~w~----------------------------~~~~i~~~~l~v~----------------~v~~~~~----- 192 (417)
T COG2223 162 VAVAFGFLAWR----------------------------NVAGIYVVALAIA----------------AVLAWLG----- 192 (417)
T ss_pred HHHHHhhHHHH----------------------------HHHHHHHHHHHHH----------------HHHHHHH-----
Confidence 21111100000 0011111110000 0000000
Q ss_pred cccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHH
Q 009176 264 LGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLY 343 (541)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwll 343 (541)
. +|.+ +.+ .... + . .+...+.+.+++|=|.+
T Consensus 193 ----~----------------~d~p----------~~r-----------~~~~-~-----~--~~~~~~~v~~~~~~W~l 223 (417)
T COG2223 193 ----M----------------NDVP----------EHR-----------ASVK-P-----Q--LPAQLKAVFSNKDTWLL 223 (417)
T ss_pred ----h----------------CCCh----------hhh-----------cccc-c-----c--chhHHHHHhcCcchHHH
Confidence 0 0000 000 0000 0 0 00234567778899999
Q ss_pred HHHHHHhhcccceeecchHHHHhh-hcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHH
Q 009176 344 FFVYFSGATLGLVFLNNLGQIAES-RGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAG 420 (541)
Q Consensus 344 f~~~~~g~g~Glm~I~n~g~i~~s-lg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~ 420 (541)
-+.|+..-|+=+-..+-+++.-+. .|.++ +....++...-+.+-|-.+|+++|-. + +|..++ +.++.|++
T Consensus 224 sllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-----G-g~rv~~-~~f~~~~~ 296 (417)
T COG2223 224 SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-----G-GRRVTL-AVFVGMAL 296 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-----c-chhHHH-HHHHHHHH
Confidence 888877666544445556666554 45553 34788899999999999999995532 1 344433 34444555
Q ss_pred HHHHHhhc-------ccch-h----HHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 421 AFMLLLNE-------TNVA-L----YTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 421 ~~ll~~~~-------~~~~-l----~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
+..++... .+.. . .......|+.=|+.|-..|.+=.+ +.|.-=|++...-++|++..|+..|.
T Consensus 297 ~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 297 AAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred HHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHHhccccccchhHHHHH
Confidence 54333322 1211 2 223345556666777777777665 78888899999999999999999999
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
.||.+++ |+..|++....++++.++...++.|.|
T Consensus 372 ~~~~tg~------------~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 372 SLDLTGS------------YTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred HHHhccc------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998 999999999999999999998888865
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-09 Score=109.23 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=97.1
Q ss_pred chHHHH-hhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHH
Q 009176 360 NLGQIA-ESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYT 435 (541)
Q Consensus 360 n~g~i~-~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~ 435 (541)
...... +.+|+++ .....++..+....|+++.|.+.|.. +|...+........+.........+ ..+.+
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-------GKRFLMRVAAVAGVCFYAGMLMAHSPAILLG 310 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344333 3466653 34556666666777899988874432 2222222222222222222222222 23444
Q ss_pred HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHH
Q 009176 436 STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 436 ~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~ 515 (541)
...+.++++|..++..++...|.+. ++-|+..++......+|..+++.+.|.++|..+ |+..|.+.
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-------------~~~~~~~~ 376 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-------------YHAVFWFA 376 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHH
Confidence 5566778888888888999999997 568999998888888999999999999999753 79999988
Q ss_pred HHHHHHHHHHHHHH
Q 009176 516 GSFCLFGTFLALIL 529 (541)
Q Consensus 516 ~~~~~~g~~lsl~l 529 (541)
+.+++++.++.+.+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (393)
T PRK15011 377 LVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHhh
Confidence 88887777665544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=117.92 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=109.8
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeec-chHHH-HhhhcCCcc--cchhh-hhhhcccccccccccchhhhcccCCCC
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLN-NLGQI-AESRGCSGT--SSLVS-LSSSFGFFGRLIPSLFGYFFSRSKHMI 405 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~-n~g~i-~~slg~~~~--~~~Vs-l~Si~N~~GRl~~G~~s~~~~~~~~~~ 405 (541)
.++.++++++|.+.+...+- ..+....+ -..+. .+..|++.. ....+ +..+...+|.+++|.+.|..
T Consensus 215 l~~~~~~~~~~~~ll~~~l~-~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~------- 286 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLY-KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL------- 286 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 45677788888765544322 12221111 12223 345677533 33333 33467778999999884432
Q ss_pred ChhHHHHHHHHHHHH---HHHHHhhcc-cc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 406 PSPASIGALMAPMAG---AFMLLLNET-NV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~---~~ll~~~~~-~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
+|...+.+..+.+++ .+.+++... +. .+.+...+..+++|..++.+.+...|+...+.-++-||+++....+|..
T Consensus 287 g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~ 366 (491)
T PRK11010 287 SLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV 366 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 222222221222222 222223322 22 2344455656666666666777777777777778999999988899999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.+.++|+++|..+ |+..|.+.+.+++++.++...++
T Consensus 367 ~~~~~~G~l~~~~G-------------~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 367 YVGPVAGWFVEAHG-------------WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHhC-------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889999999753 89999999999999988887663
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=110.34 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=107.2
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccce-eecchHHHHhhhcCCcc--cchhhhhhh-cccccccccccchhhhcccCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLV-FLNNLGQIAESRGCSGT--SSLVSLSSS-FGFFGRLIPSLFGYFFSRSKHMI 405 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm-~I~n~g~i~~slg~~~~--~~~Vsl~Si-~N~~GRl~~G~~s~~~~~~~~~~ 405 (541)
+.++.+++++||.+.+..++....... ...+...+.+..|++.. ....+..++ ...+|.+.+|.+.|..
T Consensus 201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~------- 273 (402)
T PRK11902 201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL------- 273 (402)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 357889999999877665543322111 11122234455676533 333333333 4667777878774322
Q ss_pred ChhHHHHHHHHHHHHH---HHHHhhc-ccc-hhHHHH----HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhh
Q 009176 406 PSPASIGALMAPMAGA---FMLLLNE-TNV-ALYTST----AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIP 476 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~~---~ll~~~~-~~~-~l~~~s----~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~ 476 (541)
+|...+....+...+. +.+++.. .+. .+++.. ...|+.++..+.++..++.+.++.++++ +......
T Consensus 274 g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 349 (402)
T PRK11902 274 GLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALAS 349 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHH
Confidence 2222222222222222 2222332 222 233333 3456678888999999999999977654 4444446
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009176 477 IGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYS 538 (541)
Q Consensus 477 ~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~Y~ 538 (541)
+|..+++.++|.++|+-+ |+..|.+.+.+++++.++..-...+.|| |+
T Consensus 350 l~~~~~~~~~G~l~~~~G-------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~ 397 (402)
T PRK11902 350 VGRVYVGPTSGYLVEAYG-------------WPGFYLMTVVIALPGLALLWLMRGTIGR-YE 397 (402)
T ss_pred HHHHHHHHHHHHHHHHhC-------------hHHHHHHHHHHHHHHHHHHHHHhhhccc-cc
Confidence 777777778999999865 7999999998888887766555444444 44
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=105.40 Aligned_cols=364 Identities=14% Similarity=0.116 Sum_probs=240.3
Q ss_pred ccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 009176 30 PAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIF 108 (541)
Q Consensus 30 ~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~ 108 (541)
.+-=|++|+.+++|+.|...+-++.-.|=-+ ++|+|++.+|++.+..+.+|-....+|-.+.|=+-+.+ .|-..+
T Consensus 33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y~~FL 108 (422)
T COG0738 33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SYGFFL 108 (422)
T ss_pred hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHHH
Confidence 4567999999999999999999998877744 99999999999999999999999999999999776664 233345
Q ss_pred HHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHh
Q 009176 109 LLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACV 187 (541)
Q Consensus 109 ~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l 187 (541)
..+|+.|.|.+...|++-.--..+.|+ +.-.=..+.-+++||.+.+--.+-..+.- ++ +.
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil---s~----------~~------ 169 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL---SG----------VA------ 169 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH---hh----------hh------
Confidence 567889999999999987777788877 33334688899999999998888877651 11 00
Q ss_pred hccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccccc
Q 009176 188 VTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEK 267 (541)
Q Consensus 188 ~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~ 267 (541)
.-. +++ +.......+ ..++ ..++..+.+.++++..- +..
T Consensus 170 ------~~~-~~~----------~~~~~~~~~-----------~~~v--------~~pYl~~~~~lvll~v~----~~~- 208 (422)
T COG0738 170 ------LTM-SAA----------QILAIKGAD-----------ASSV--------QFPYLILAGLLVLLAVL----ILL- 208 (422)
T ss_pred ------hcc-CHH----------HHHHHHHHH-----------HHhh--------hhHHHHHHHHHHHHHHH----HHh-
Confidence 000 110 000000000 0000 11233332333222221 000
Q ss_pred hhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHHH
Q 009176 268 IRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVY 347 (541)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~ 347 (541)
.|.++ .++++ ++..+ ++|.+..++++++.+|+--+..
T Consensus 209 --------------~k~p~-------------~~~~~--------~~~~~--------~~~~~~~~l~~~~~~~~gvl~~ 245 (422)
T COG0738 209 --------------SKLPD-------------LQVAA--------PSLGA--------SGSAGLSSLFQNKHLRLGVLAI 245 (422)
T ss_pred --------------ccCCc-------------CCccc--------ccccc--------cccchHHHHHhChHHHHHHHHH
Confidence 01100 00000 01111 1223788999999999999999
Q ss_pred HHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccc-cccchhhhcccCCCCChhHHHHHHHHHHHHHHH
Q 009176 348 FSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLI-PSLFGYFFSRSKHMIPSPASIGALMAPMAGAFM 423 (541)
Q Consensus 348 ~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~-~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~l 423 (541)
+|=.|.=.+.=+-+.+..+. .|.+ +++..+|..=.+=..||+. .+...++- -.|...+. ++.-..+ .+
T Consensus 246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~------~~k~Laf~-a~~~ill-~~ 317 (422)
T COG0738 246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIK------PEKYLAFY-ALIAILL-LL 317 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------HHHHHHHH-HHHHHHH-HH
Confidence 99999888877777777776 5655 4567888888888899976 55556542 12333221 1111111 12
Q ss_pred HHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccc
Q 009176 424 LLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCM 503 (541)
Q Consensus 424 l~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~ 503 (541)
....+++.....+..++|+.-+..|+..-++..+..| +|=+.-=+++.++. +|+-+-|++.|++-|+.+.
T Consensus 318 ~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~mai-vGGAiiP~l~G~i~d~~g~-------- 387 (422)
T COG0738 318 AVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAI-VGGAIIPPLQGVIADMFGI-------- 387 (422)
T ss_pred HHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeehe-ecchHHHHHHHHHHHhhhh--------
Confidence 2233444444446678999999999999999999999 77666666666655 7778889999999999886
Q ss_pred cccccHHHHHHHHHHHHHHH
Q 009176 504 GMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 504 G~~CY~~tF~i~~~~~~~g~ 523 (541)
..++.+...+|.+-+
T Consensus 388 -----~~~~~~~pllc~lyV 402 (422)
T COG0738 388 -----QLTFLIVPLLCYLYV 402 (422)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 677777777776655
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=107.42 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=100.4
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeecchHH-HHh-hhcCC-cccchhhhhhhcccccccccccchhhhcccCCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQ-IAE-SRGCS-GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIP 406 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~-slg~~-~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~ 406 (541)
..+++++++.||.+.+..++... +....+.... ..+ .++.+ ..+...++..+...+|.++.|.+.|.. +
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-------g 285 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNL-AFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKF-------G 285 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH-HHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------C
Confidence 35778899999998776655432 2221221111 111 11211 123344555677777887777764321 3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-cc-chhHHHHHHHHHhhhccchhhHHHhhhh-------cCCCcccchhhhhhhhhhh
Q 009176 407 SPASIGALMAPMAGAFMLLLNE-TN-VALYTSTAIIGVCSGAITSISVTTTTEL-------FGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 407 R~~~l~~~~~~~~~~~ll~~~~-~~-~~l~~~s~liG~~yG~~~~l~P~ivse~-------FG~k~fg~nyg~~~~a~~~ 477 (541)
|...+....++++++.+++... .+ ..+++..++.|+++|..++...++++|. .|.++-|..+|+..+..-+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 286 RKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 3333333444445554444332 22 3455667788999999999999999987 4688899999999999999
Q ss_pred hHHHHHHHHHHHhhhcC
Q 009176 478 GSFLFGYLAALVYHKEG 494 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~ 494 (541)
|..+++.+.|.+.|..+
T Consensus 366 g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 366 GQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998754
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=108.27 Aligned_cols=377 Identities=18% Similarity=0.167 Sum_probs=223.9
Q ss_pred ccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHH-----HHHHHHHHHHHHHhhhcccc
Q 009176 28 NFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGS-----TLGLIGYGLQYLFLTHTISH 101 (541)
Q Consensus 28 ~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa-----~~~~~GY~~~~l~~~~~i~~ 101 (541)
.|+.=.|.|++..++|.+|+..++.+..+.=.+ =+..|.+.||..||..+.+|- +..+.|..
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------------ 114 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------------ 114 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------------
Confidence 578889999999999999999999988877655 578999999999987654443 33333432
Q ss_pred chHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHH--HHHhcCCCCCcccchhhhh
Q 009176 102 LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAV--NAIETSSPNKRAKLYLLFN 178 (541)
Q Consensus 102 ~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~--~~~~~~~~~~d~~~fLlll 178 (541)
.++|++.++..+=|.=|+|.--+|-.+=.+.||+ .||+..++--...-+.|++-..+. ..+.. +.+-..=.
T Consensus 115 ~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~---~~~w~~~f--- 188 (448)
T COG2271 115 PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF---HGGWRAAF--- 188 (448)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh---ccchhHHH---
Confidence 2678888888998988988888999999999998 599999988877777777776665 22221 11111101
Q ss_pred chhhhHhHhhccc-eeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhh
Q 009176 179 SIFPLLACVVTSP-VVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLL 257 (541)
Q Consensus 179 a~~p~~v~l~~~~-~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 257 (541)
+.|++++++... ..+..+|.++ +.+
T Consensus 189 -~~pgiiaiival~~~~~~rd~Pq----------s~G------------------------------------------- 214 (448)
T COG2271 189 -YFPGIIAIIVALILLFLLRDRPQ----------SEG------------------------------------------- 214 (448)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCcc----------ccC-------------------------------------------
Confidence 233333322211 1111101110 000
Q ss_pred hccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhc
Q 009176 258 APLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQR 337 (541)
Q Consensus 258 ~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~ 337 (541)
+| |+ +++++ |+.+.. ++ +++.+. .-..+.=.+-.|++
T Consensus 215 LP---~i--------e~~~~--------------d~~e~~-~~------------~~~~~~-----ls~~~i~~~YVL~N 251 (448)
T COG2271 215 LP---PI--------EEYRG--------------DPLEIY-EE------------EKENEG-----LTAWQIFVKYVLKN 251 (448)
T ss_pred CC---CH--------HHhhc--------------Cchhhh-hh------------hccCCC-----ccHHHHHHHHHHcC
Confidence 01 00 00000 000000 00 000000 00111233456788
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHH--hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHH-
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIA--ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIG- 412 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~--~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~- 412 (541)
+--|++=++..+.--.= .-|+.=+++- |..|++ ++...++++=+....|-++.|++||..-| +|...+.
T Consensus 252 k~iW~la~a~vfvYivR-~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk-----grR~p~~~ 325 (448)
T COG2271 252 KLIWLLALANVFVYVVR-YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK-----GRRGPMAL 325 (448)
T ss_pred hHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----cccchHHH
Confidence 88898866554431100 0133444442 445664 57789999999999999999999776533 2332222
Q ss_pred HHHHHHHHHHHHHhhcccc--hhH-HHHHHHHH-hhhccchhhHHHhhhhcCCC-cccchhhhhhhhhhh-hHHHHHHHH
Q 009176 413 ALMAPMAGAFMLLLNETNV--ALY-TSTAIIGV-CSGAITSISVTTTTELFGTK-NFSVNHNIVVANIPI-GSFLFGYLA 486 (541)
Q Consensus 413 ~~~~~~~~~~ll~~~~~~~--~l~-~~s~liG~-~yG~~~~l~P~ivse~FG~k-~fg~nyg~~~~a~~~-Gs~l~~~la 486 (541)
+.++...++........+. .+. +.-.++|+ =||=+ ..-.+.+--|.+| --|+.=|+.-+..-+ |+...+...
T Consensus 326 i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq--mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~ 403 (448)
T COG2271 326 IFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ--MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL 403 (448)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH--HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence 2233333344444433322 333 34456776 46655 3344444445555 467888887755444 555556677
Q ss_pred HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 009176 487 ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQR 540 (541)
Q Consensus 487 G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~Y~~~ 540 (541)
|++-|..+ ....|++..+.++++.++.+...++.++-++++
T Consensus 404 g~i~d~~g-------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~ 444 (448)
T COG2271 404 GYIADTWG-------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRDE 444 (448)
T ss_pred eeeEecCC-------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhhh
Confidence 77777722 788999999999999988888877777777754
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=110.96 Aligned_cols=365 Identities=12% Similarity=0.111 Sum_probs=231.2
Q ss_pred HHHhCCChhhHHHHHHhhhhhcccch-hhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhc
Q 009176 37 KQLLSLSQLQLNNLAFASDAGKLFGW-ISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAG 115 (541)
Q Consensus 37 k~~l~~sq~~l~~l~~~~~~G~~~G~-~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g 115 (541)
+..+++|++|.+.|=-+...|..+|. |+|.++||+|.|.++.++.+...++-.+.=++.+. .+|.+++.=++-|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhH
Confidence 67899999999999999999998855 55999999999999999999999998888777665 2356788888999
Q ss_pred cccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHhhccceee
Q 009176 116 NSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVR 194 (541)
Q Consensus 116 ~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir 194 (541)
.+++...++.-.-..|.+|. .|++..+++.+..-+|..+---+...+.. ++-+=++.|-++-. ...+.+++..++.+
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~-s~~GW~sifY~~g~-~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE-SSLGWPSIFYVFGI-VGLIWFILWFLFYS 217 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cCCCCchHHHHHHH-HHHHHHHHHHHHhc
Confidence 99998888888888899987 79999999888774443332223333331 00011222222211 11111111111111
Q ss_pred eecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccccchhhhhhh
Q 009176 195 EIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVED 274 (541)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~ 274 (541)
- .+
T Consensus 218 d---~P-------------------------------------------------------------------------- 220 (466)
T KOG2532|consen 218 D---SP-------------------------------------------------------------------------- 220 (466)
T ss_pred C---Cc--------------------------------------------------------------------------
Confidence 0 00
Q ss_pred hhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHHHHHhhccc
Q 009176 275 KRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLG 354 (541)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~G 354 (541)
..++++++ +++.-++++. .++.. ..+++..++++++++.+|.+|+.-++..-.=
T Consensus 221 ----~~h~~is~-----~El~~I~~~k----------~~~~~-------~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~ 274 (466)
T KOG2532|consen 221 ----SKHPNISE-----KELKYIEKGK----------SEAHV-------KKKPPVPYKAILTSPPVWAIWISAFGGNWGF 274 (466)
T ss_pred ----ccCCCCCH-----HHHHHHHhcc----------ccccc-------CCCCCCCHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 00111100 0000011100 00000 0125678999999999999999998874333
Q ss_pred ceeecchHH-HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCC----ChhHHHHHHHHHHHHHHHHHhh
Q 009176 355 LVFLNNLGQ-IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMI----PSPASIGALMAPMAGAFMLLLN 427 (541)
Q Consensus 355 lm~I~n~g~-i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~----~R~~~l~~~~~~~~~~~ll~~~ 427 (541)
.+.+..+.. +-+-+|++ +...+.++=-+...+-++++|.++|.+.+| .+ -|..+-.+.+...++.++.+.+
T Consensus 275 ~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~--~ls~t~~rkifn~i~~~~~ai~l~~l~~ 352 (466)
T KOG2532|consen 275 YLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR--ILSETTVRKIFNTIAFGGPAVFLLVLAF 352 (466)
T ss_pred HHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence 333333333 33457775 667788888888999999999997766332 23 3444555666666666666665
Q ss_pred ccc--c--h---hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHh-hhcCCCCCC
Q 009176 428 ETN--V--A---LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVY-HKEGHNAHN 499 (541)
Q Consensus 428 ~~~--~--~---l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iy-D~~~~~~~~ 499 (541)
..+ . . +.++.++.|++.++..- ....--++|-+...|+......+++++.|.+.|.+- |.+.+.
T Consensus 353 ~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~-----~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e--- 424 (466)
T KOG2532|consen 353 TSDEHRLLAVILLTIAIGLSGFNISGFYK-----NHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE--- 424 (466)
T ss_pred cCCCcchHHHHHHHHHHHHcccchhhhHh-----hhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH---
Confidence 542 2 1 22233444555554321 111127889999999999999999999999999887 331111
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 500 GKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 500 ~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.+..|++.+++.+++.++-.+.
T Consensus 425 --------W~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 425 --------WRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred --------HHHHHHHHHHHHHHhchheeEe
Confidence 8999999999998888554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-07 Score=99.13 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=88.7
Q ss_pred CCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009176 24 GTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHL 102 (541)
Q Consensus 24 Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~ 102 (541)
-+...+..-=|++.+.+|.|+++.+..-...-+|..+ .++.|.+.||+|+|.++++|.+...++....-. . .
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--a-----~ 102 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF--T-----T 102 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--c-----C
Confidence 3445555555678899999999999887777788755 789999999999999999887666665543322 1 2
Q ss_pred hHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHH
Q 009176 103 SYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLY 155 (541)
Q Consensus 103 ~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaif 155 (541)
++|++.+.-++.|.+.++..+.+.......||+ .|+.+.|+.-...+++..+-
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG 156 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777788887776555555444467787 47788887766666655443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=97.20 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhccc----------chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 405 IPSPASIGALMAPMAGAFMLLLNETN----------VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 405 ~~R~~~l~~~~~~~~~~~ll~~~~~~----------~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
.+.+..+.+.+++++++++.+..... ..+.+...+.|++-+...++..+++.+.--.+.-|.-.|+.+++
T Consensus 347 ~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 347 LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45555666667777777666543221 24666778999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 009176 475 IPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKF 536 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~ 536 (541)
..+|+++++.+.+.+.......+....+.| |...|...+.++++..++.+++..+.+|.
T Consensus 427 ~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 427 TAGAALIAGYVANLMAVPDNVTDPLMSLEV---YGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777755422111000001111 88999999888776666666655555553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-07 Score=97.23 Aligned_cols=175 Identities=10% Similarity=0.062 Sum_probs=112.5
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhh-hcccccccccccchhhhcccCCCCCh
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSS-SFGFFGRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~S-i~N~~GRl~~G~~s~~~~~~~~~~~R 407 (541)
.++.+|++.+|......++....-.....-.+...++.|++. .....++.. +...+|++.+|.+.|.. +|
T Consensus 201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-------g~ 273 (390)
T TIGR02718 201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-------GL 273 (390)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-------hH
Confidence 578888898888776665554322222333445556678763 334444444 35567788877773322 33
Q ss_pred hHHHHHHHHHHHH-HHHHHh--h---ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCC-CcccchhhhhhhhhhhhH
Q 009176 408 PASIGALMAPMAG-AFMLLL--N---ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGT-KNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 408 ~~~l~~~~~~~~~-~~ll~~--~---~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~-k~fg~nyg~~~~a~~~Gs 479 (541)
...+....++... ..+... . ..+ ..++....+.++++|..++.+.+.+.+..+. ++.++.+++......+|.
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 274 WRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 3333222222211 111111 1 111 1233444555788999988888898888887 888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
.+++.++|.+||..+ |+..|.+.+.+++++.++
T Consensus 354 ~~g~~~~G~l~~~~G-------------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 354 LIASSIAGYLTDRFG-------------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHc-------------cHHHHHHHHHHHHHHHHH
Confidence 999999999999764 799999988877776544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-08 Score=100.06 Aligned_cols=122 Identities=7% Similarity=-0.121 Sum_probs=76.3
Q ss_pred hHHHHHHhCCChhhHHHHHHhhhhhcccchhhhhhcccc-----chHHH-HHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 33 SSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYL-----PLWLV-LLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 33 s~~lk~~l~~sq~~l~~l~~~~~~G~~~G~~~Gll~d~~-----pp~~v-lliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
-|.+.+.+|+|.+|...++... +...++++.|.+.||+ |+|.. ++++.+...+....+... .. ...+|.
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~~--~~~l~~ 85 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLVG-LPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--VP--STDLPL 85 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--Cc--chhHHH
Confidence 4677888999999999987663 3334599999999998 44444 445555544443333222 11 234566
Q ss_pred HHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHH
Q 009176 107 IFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAV 159 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~ 159 (541)
+....++.+...+..+.+.-.-..+.+|+ +||.+.|+.-....++..+-..+.
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 66665566665555544444444588865 799999877666665544444443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=97.37 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHH
Q 009176 11 LSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYG 89 (541)
Q Consensus 11 ~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~ 89 (541)
..+..+.++...+...+.+. .+.+.+.+|.++.+...+..+.-++..+ ++++|.+.||+++|.++.++.+...++-.
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~ 83 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFA--AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL 83 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence 34555566655544444433 3456788899999999999888888855 99999999999999999888877766654
Q ss_pred HHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhH
Q 009176 90 LQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLS 151 (541)
Q Consensus 90 ~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLS 151 (541)
..... . ++ .+.-++.|.+.+....+....-.+.+|+ +|+++.|+.-....++
T Consensus 84 ~~~~~--~---~~-----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~ 136 (393)
T PRK11195 84 LMLFG--I---HP-----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAA 136 (393)
T ss_pred HHHHH--H---HH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 43221 1 11 1223566888888777777777788986 6999999865554433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=101.33 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHhhccc---ceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 339 DFWLYFFVYFSGATLG---LVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~G---lm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
+.|.++...++....+ .+....+.++.+++|.+ +....+++..+...++++..|.+.|- ++|...+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-------~grr~~~~~ 90 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-------TDRRYVVIL 90 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cCcHHHHHH
Confidence 3444454444432222 22344577788888885 45678889999999999998877432 155566666
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 414 LMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
..++++++.++.....+ ..+++.-.+.|++.|..++..+++++|+|..|+.+...+++..+..+|..+++.+++.+.|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~ 170 (394)
T PRK10213 91 FAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL 170 (394)
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666555544 46778889999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 493 EGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 493 ~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
.+ +|..|.+.+.++++..
T Consensus 171 ~g-------------w~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 171 IG-------------WRNVFNAAAVMGVLCI 188 (394)
T ss_pred cC-------------HHHHHHHHHHHHHHHH
Confidence 43 7999999877665543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=88.46 Aligned_cols=125 Identities=12% Similarity=-0.054 Sum_probs=90.9
Q ss_pred chHHHHHH--hCCChhhHHHHHHhhhhhccc-chhhhhhccc-cchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 009176 32 YSSQLKQL--LSLSQLQLNNLAFASDAGKLF-GWISGVASVY-LPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHI 107 (541)
Q Consensus 32 ys~~lk~~--l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~-~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l 107 (541)
...-+.++ +|+|++|...+-....++..+ .+++|.+.|| +|++.++++|.+...+|+..+.+.- .+|.+
T Consensus 33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~-------~~~~~ 105 (475)
T TIGR00924 33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI-------YPDLI 105 (475)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-------cHhHH
Confidence 33345666 999999999988888888766 8899999999 8999999999999999998776421 23555
Q ss_pred HHHHHHhccccccccceeeeeecccCCCC----CceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 108 FLLTVLAGNSICWINTVCYVVTIKNFPFD----RQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 108 ~~~~~l~g~g~~~~nTa~lvt~v~NFP~~----RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.+...+.|.|.+.+..+.-....+.||++ |+++.++.-....+++++=..+...+.
T Consensus 106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777655554444445778753 888888777666676666555555554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=101.97 Aligned_cols=175 Identities=12% Similarity=0.106 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
+.+|++++.+++......++...+..+.+++|.+. ....++...+...++.+.+|.++|.. +|...+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------g~r~~~~~~~ 82 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-------GVRNIFFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHH
Confidence 46899988887765444445556888888898864 34566777777888888888885532 3333333444
Q ss_pred HHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 416 APMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
++++++.++.....+ ..+++.-++.|++.|..++...+.++|.+..|+.++.+|+...+..+|..+++.+.|.+.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~- 161 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA- 161 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-
Confidence 445555444444444 456777889999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
. |+..|.+...+++++.++......|
T Consensus 162 g------------w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 162 S------------WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred c------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 8999999988888887777665444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=94.56 Aligned_cols=158 Identities=8% Similarity=0.046 Sum_probs=90.3
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCCcccchhhhhhhcccccccccccc-hhhhcccCCCCChh
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCSGTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSP 408 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~ 408 (541)
.+++++++.|+.+.++.++....-...........+ .+|.+ .....++.+.+.++.+++..+ .++.+| .++.
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~r----~g~~ 294 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDT--GLFTVLVLVQNLVGTVASAPLVPGMVAR----IGKK 294 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCcH
Confidence 578999999998877666553221111111111112 12322 122223233334444443332 222211 1333
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhc-------CCCcccchhhhhhhhhhhh
Q 009176 409 ASIGALMAPMAGAFMLLLNET--N-VALYTSTAIIGVCSGAITSISVTTTTELF-------GTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~F-------G~k~fg~nyg~~~~a~~~G 478 (541)
..+.+..++++++.+++.... + ..+++...+.|+..|..++...++++|.= |.++-|..+|+..+..-+|
T Consensus 295 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 333334444555544443322 2 23445567889999998888888887754 6677899999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 009176 479 SFLFGYLAALVYHKEG 494 (541)
Q Consensus 479 s~l~~~laG~iyD~~~ 494 (541)
.-+++.+.|.+.|..+
T Consensus 375 ~aig~~i~g~~l~~~G 390 (448)
T PRK09848 375 QAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999888888876544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=95.49 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHhhcccc-eeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGL-VFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGAL 414 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Gl-m~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~ 414 (541)
..++.....+.+..+.+. ++...+.++.+++|.+ +.....++..+.+.++.+..|.+.|.. +|...+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-------g~r~~~~~~ 76 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-------GRRPVLLLG 76 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-------CChHHHHHH
Confidence 344555444444444443 3444667788888885 456788888899999999999874422 333444444
Q ss_pred HHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc
Q 009176 415 MAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE 493 (541)
Q Consensus 415 ~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~ 493 (541)
.++.+++.++.....+ ..+++...+.|++.|...+..++++.|.+..++-+..+|+......+|..+++.++|.+.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 156 (385)
T TIGR00710 77 LFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL 156 (385)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555555555444 456777889999999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 494 GHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 494 ~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+ ++.+|.+.+.++++..++..+.
T Consensus 157 ~-------------~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 157 S-------------WHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred C-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3 7999999988877776665544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-10 Score=120.90 Aligned_cols=379 Identities=16% Similarity=0.130 Sum_probs=203.5
Q ss_pred ChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccc
Q 009176 43 SQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWI 121 (541)
Q Consensus 43 sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~ 121 (541)
++.+...+..+..+|..+ .++.|.+.||+|+|.++.++.++..+|-.+...+-+. ..+|.+++.-++.|.+.+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccc
Confidence 556677888999999977 7899999999999999999999999887665544322 24577777778888887766
Q ss_pred cceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCC
Q 009176 122 NTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHV 200 (541)
Q Consensus 122 nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~ 200 (541)
.+.+.+-..+.=|+ +||....+.-....+...+-..+...+ ....+++.-..++.+...|.++.++...+ . |++
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~---~-pES 194 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV-SYYSDNWGWRILLIFGAIPSLLVLLLRFF---L-PES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---c-ccc
Confidence 66666666666665 799998887776654433222222222 10101123445555555666544443322 2 111
Q ss_pred cccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhc
Q 009176 201 QESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINR 280 (541)
Q Consensus 201 ~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~ 280 (541)
+..-....+.|+.. +.
T Consensus 195 P~wL~~~~~~~~A~-------------------------------------------------------~~--------- 210 (451)
T PF00083_consen 195 PRWLLSKGRDEEAE-------------------------------------------------------KV--------- 210 (451)
T ss_pred cceecccccccccc-------------------------------------------------------cc---------
Confidence 10000000000000 00
Q ss_pred ccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchh----HHHHHHHHHHhhcccce
Q 009176 281 VKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVD----FWLYFFVYFSGATLGLV 356 (541)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~----Fwllf~~~~~g~g~Glm 356 (541)
-.+.++.+.+++ +.+++.+ +.+. ..+++.+++++++++. +...+....+...+|..
T Consensus 211 l~~~~~~~~~~~---~~~~~~~----------~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~ 270 (451)
T PF00083_consen 211 LRKLRGKEIEDE---EIEEIKA----------EKKE-------SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGIN 270 (451)
T ss_pred cccccccccccc---ccccccc----------cccc-------ccccceeeeeccccccccccccccccccccccccccc
Confidence 000000000000 0000000 0000 0011144455555533 22222222233345544
Q ss_pred eecc-hHHHHhhhcCCcccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHh-----hccc
Q 009176 357 FLNN-LGQIAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLL-----NETN 430 (541)
Q Consensus 357 ~I~n-~g~i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~-----~~~~ 430 (541)
.+.+ ..++.+..|.++....-.+..+.+..+-+++.++.|.. +|...+......++++.+.+. ...+
T Consensus 271 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T PF00083_consen 271 FIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRF-------GRRKLLIIGLLLMAICSLILGIIFFLGVSS 343 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccc
Confidence 3433 34555666665443333455677777877776663322 344333333333333322221 1111
Q ss_pred ----c-hhHHHHHHHHHhhhccchhhH-HHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCcccc
Q 009176 431 ----V-ALYTSTAIIGVCSGAITSISV-TTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMG 504 (541)
Q Consensus 431 ----~-~l~~~s~liG~~yG~~~~l~P-~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G 504 (541)
. ...+...+....++..++..+ .+++|+|.++.=++-.|+.....-+++.+.+.+...+.|..+.
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~--------- 414 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG--------- 414 (451)
T ss_pred ccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------
Confidence 1 122233344456665555555 7889999999999999998877778888877777777666542
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 505 MACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 505 ~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
...|.+.+++++++.++.......||
T Consensus 415 ----~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 415 ----WGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred ----cccchhhHHHHHHHHhheeEEEeeCC
Confidence 56777877888888877766655555
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-05 Score=84.13 Aligned_cols=357 Identities=19% Similarity=0.138 Sum_probs=231.3
Q ss_pred CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
+-+.-..-=|++.+.+|.|..+.-.+=+.--+|..+ +++-..+.||+++|-+++...+...+|-.+..++ +.
T Consensus 28 tEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-------p~ 100 (394)
T COG2814 28 TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-------PS 100 (394)
T ss_pred HHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-------cc
Confidence 456677778999999999999999999999999977 9999999999999999887777666776555432 56
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhh
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFP 182 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p 182 (541)
||.+.+.=++.|.+.+-+-..+...++|-=|+ +||.|+|+...- ++-+.
T Consensus 101 f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G--~tlA~---------------------------- 150 (394)
T COG2814 101 FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTG--LTLAT---------------------------- 150 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHH--HHHHH----------------------------
Confidence 88888888888887776666666666666665 789998875432 22211
Q ss_pred hHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccc
Q 009176 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVI 262 (541)
Q Consensus 183 ~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~i 262 (541)
+++.|.=+.+|+.- +....|....+++.- ..+.+....|
T Consensus 151 ----v~GvPLGt~ig~~~-------------GWR~~F~~ia~l~ll---------------------~~~~~~~~lP--- 189 (394)
T COG2814 151 ----VLGVPLGTFLGQLF-------------GWRATFLAIAVLALL---------------------ALLLLWKLLP--- 189 (394)
T ss_pred ----HHhccHHHHHHHHh-------------hHHHHHHHHHHHHHH---------------------HHHHHHHhCC---
Confidence 12222212221110 111111110000000 0001111122
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
|- +. ++ +.. .+-.+..+.+|++.-|.
T Consensus 190 ~~------------------~~-------------~~--------------~~~---------~~~~~~~~~l~~p~v~~ 215 (394)
T COG2814 190 PS------------------EI-------------SG--------------SLP---------GPLRTLLRLLRRPGVLL 215 (394)
T ss_pred Cc------------------cC-------------CC--------------CCC---------cchhHHHHHhcCchHHH
Confidence 00 00 00 000 11134478999999999
Q ss_pred HHHHHHHhhcccceeecchHHHHhhh-cCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIAESR-GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~~sl-g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
.+++.+++.+..-+...-++++.++. |.+ ..+...-++.+..++|-+++|.+.|.. +|..... ..++++
T Consensus 216 ~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~-------~~~~l~~-~~~l~a 287 (394)
T COG2814 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRG-------PRRALIA-ALLLLA 287 (394)
T ss_pred HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccc-------chhHHHH-HHHHHH
Confidence 99999999998888888888888764 665 455677788999999999999885532 3444333 333344
Q ss_pred HHHHHHhhcc-cc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 009176 420 GAFMLLLNET-NV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497 (541)
Q Consensus 420 ~~~ll~~~~~-~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~ 497 (541)
+.++.+.... +. ...+...+.|+..+...-....-.++ .-+++-..-=++...+.-+|--++..+.|.++|+ ..
T Consensus 288 ~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g-- 363 (394)
T COG2814 288 LALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LG-- 363 (394)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc--
Confidence 4444443332 32 33334445677766666666677777 6677777666666666667767777778899998 44
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 498 HNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 498 ~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
|..+.++.+.+.+++.++.++..++.||
T Consensus 364 ----------~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 364 ----------YAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999988887665554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=95.87 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
+++|.+-+..++..-...++..-+..+.+++|.+ +....++...+...+|++..|.+.|. .+|...+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-------~g~r~~~~~~~ 75 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-------YSLKHILLFLV 75 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-------CccHHHHHHHH
Confidence 4566665554443333334445667778888875 45678999999999999999987442 14555555555
Q ss_pred HHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 416 APMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
++.+++.++.....+ ..+++.-.+.|++.|..++..+++++|++..++.+...++...+..+|..+++.+++.+.|..
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~- 154 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF- 154 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-
Confidence 666666666665555 467788899999999999999999999999999999999999999999999998999998754
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
+ +|.+|.+.+..+++..+...
T Consensus 155 g------------wr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 155 S------------WRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred c------------HHHHHHHHHHHHHHHHHHHH
Confidence 3 89999999887766655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-05 Score=85.73 Aligned_cols=150 Identities=15% Similarity=-0.013 Sum_probs=92.7
Q ss_pred CCCccchhHHHHHHHHHHHHhc-CCccccc-cchHHHHHHhCCChhhHHHHHHhhhhhc-ccchhhhhhccc-cchHHHH
Q 009176 2 PLNSNILQWLSLVGAIWLQSIN-GTNSNFP-AYSSQLKQLLSLSQLQLNNLAFASDAGK-LFGWISGVASVY-LPLWLVL 77 (541)
Q Consensus 2 ~~~~~~~rw~~l~as~~v~~~~-Gt~Y~f~-~ys~~lk~~l~~sq~~l~~l~~~~~~G~-~~G~~~Gll~d~-~pp~~vl 77 (541)
||+... +|..+.....+..+- -+-|..- .-..-+++.+|+|+++...+..+...-. ..-+++|.+.|| +|++-++
T Consensus 6 ~~~~~~-~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 6 PMGLLQ-QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred Ccchhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 777753 333343333343332 2222222 2233457789999999987766666444 447899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCC---CceehhhHHHhhhhHHHH
Q 009176 78 LIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFD---RQVAVGITSSYLGLSAKL 154 (541)
Q Consensus 78 liGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~---RG~a~gllk~~~GLSaai 154 (541)
++|.+...+|+....+.-+. ..++.+...+.|.|.+.+.......-.+.||++ |+.+.++.--...+++++
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLK------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred HHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 99999999999888764211 122334455556666555444444445889864 366666665555665554
Q ss_pred HHHH
Q 009176 155 YTSA 158 (541)
Q Consensus 155 ft~i 158 (541)
-..+
T Consensus 159 g~~l 162 (489)
T PRK10207 159 SLSL 162 (489)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.4e-07 Score=95.88 Aligned_cols=169 Identities=9% Similarity=-0.004 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGAL 414 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~ 414 (541)
.-++..++.+++.......+-..+.++.+++|.+ +....+++..+...++++.+|.+ |++ +|...+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--------g~r~~~~~~ 94 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS--------NARYFMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc--------CCchhHHHH
Confidence 4444444444443322222223456777788876 45678888888888999999988 443 344445555
Q ss_pred HHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc
Q 009176 415 MAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE 493 (541)
Q Consensus 415 ~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~ 493 (541)
.++..++.++.....+ ..+++.-.+.|+..|..++...++++|.|..|+.++..++...+..+|+.+++.+.|.++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5555666555555444 345555667899999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 494 GHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 494 ~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
. +|..|++.+.++++..++..
T Consensus 175 -g------------w~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 175 -G------------WRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred -c------------HHHHHHHHHHHHHHHHHHHH
Confidence 3 89999998877665544433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.6e-07 Score=97.14 Aligned_cols=168 Identities=16% Similarity=0.137 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHhhcccceeecchHHHHhh---hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQIAES---RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~i~~s---lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
.+|.+++..++-..+--....++....+. +|++ ++...++..++...++++.+|++.|- .++|...+..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr------~~G~~~~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR------VWGTKKTMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHh------hcchHHHHHH
Confidence 46777766665322222233345555443 6765 56778999999999999999998442 1266666666
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCc---ccchhhhhhhhhhhhHHHHHHHHHHH
Q 009176 414 LMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKN---FSVNHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~---fg~nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
..+++++++++++...+ ..++++-.+.|++.|...+..+++++|.|..++ -+..+|+.+.+..+|+.+++.+.|++
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665543 356667778999999999999999999998764 77789999999999999999999999
Q ss_pred hhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 490 YHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 490 yD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
.|..+ |+.+|.+.+..++++.++
T Consensus 165 ~~~~g-------------~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 165 AENYG-------------YHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHhcC-------------hHHHHHHHHHHHHHHHHH
Confidence 98643 899999988766665444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.3e-07 Score=93.62 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
+-+|..++.+++..+.-.+.-..+.++.+.++.+ +.....++..+...+|.+.+|.+.|.. +|...+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-------g~r~~~~~~~ 79 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-------PLKRQLIFGF 79 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHH
Confidence 4577777777766554333444567888888886 345677788888889999988884422 4444455555
Q ss_pred HHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 416 APMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
++.+++.++.....+ ..+++.-.+.|++.|..++...+.+.|.|..|+-+...++......+|+.+++.+.+.+.+.+.
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 159 (394)
T PRK03699 80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555566555555544 3466677899999999999999999999988889998898888889999999999998877655
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
+ +|..|.+.+.++++..++.+
T Consensus 160 g------------w~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 E------------WYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred c------------HHHHHHHHHHHHHHHHHHHH
Confidence 5 89999998887766655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-07 Score=103.87 Aligned_cols=191 Identities=11% Similarity=0.022 Sum_probs=127.9
Q ss_pred HHhhhhchhHHHHHHHHHHhhccc---ceeec-chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCC
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLG---LVFLN-NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHM 404 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~G---lm~I~-n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~ 404 (541)
+.++-.++..|.++++.+++.... .+.++ -+.++.+.+|.+ +.+...++..+...+|.+++|+++|..
T Consensus 156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~------ 229 (742)
T TIGR01299 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL------ 229 (742)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 345556777888776665554222 12222 234444566765 455678888888999999999885532
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 405 IPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 405 ~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
+|...+.+.+++..++.++.++..+ ..+++.-.+.|++.|+.+++.+++++|.+..++-|...+++.+.+.+|..+++
T Consensus 230 -GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~ 308 (742)
T TIGR01299 230 -GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308 (742)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665555555555555554444 45777888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
.++..+-...+-+...+......-+|..|++.+..+++..++.++
T Consensus 309 ~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 309 AMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 777666543221100011112233788888877766666554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-05 Score=86.37 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=96.4
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeecchHH-HHhhhc-CCcccchhhhhhhccccccccc-ccchhhhcccCCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQ-IAESRG-CSGTSSLVSLSSSFGFFGRLIP-SLFGYFFSRSKHMIP 406 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg-~~~~~~~Vsl~Si~N~~GRl~~-G~~s~~~~~~~~~~~ 406 (541)
+..+++|+++++..++..++. +......++-.. .-+++| ++....- .++++ +.+.-+.. -..++++ || .+
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~-~~~~~~~~~f~~~yl~~~gg~~~~~~g-~~~~l-~~~aEi~~f~~~~~~~-~r---~g 271 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLI-GISHAAYYTFFSIYLQELGGYSGSTIG-ILWAL-GVVAEIPFFFFSGRFL-KR---FG 271 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhhHHH-HHHHH-HHHHHHHHHHHHHHHH-Hh---cC
Confidence 346899999998765555444 333333444333 356676 4322111 11121 11223332 1224443 22 13
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-ccch-hHHH----HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh-hhhhhhH
Q 009176 407 SPASIGALMAPMAGAFMLLLNE-TNVA-LYTS----TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV-ANIPIGS 479 (541)
Q Consensus 407 R~~~l~~~~~~~~~~~ll~~~~-~~~~-l~~~----s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~-~a~~~Gs 479 (541)
-.+++.+..+..++=..+.+.. .|.. .++. -.+=|++||..+......+.+....+.-++-.++.. +..++|.
T Consensus 272 ~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 272 IKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG 351 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence 3344444444444445555544 3322 2222 234699999999999999999999999899999876 5689999
Q ss_pred HHHHHHHHHHhhhcCC
Q 009176 480 FLFGYLAALVYHKEGH 495 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~ 495 (541)
.+++.++|++||+.+.
T Consensus 352 ~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 352 AIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999775
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=92.37 Aligned_cols=170 Identities=11% Similarity=-0.017 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHH
Q 009176 340 FWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAP 417 (541)
Q Consensus 340 Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~ 417 (541)
||+++...++.....-+....+....++.+.+ +.....++..+...++.+..|.+.|.. +|...+....++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-------g~r~~~~~~~~~ 73 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-------DRKKVMIGADLI 73 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-------chhHHHHHHHHH
Confidence 35555544444322222222334455555554 345677777777888888888874422 344444434333
Q ss_pred HHHHHHHHhhcc-----c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh
Q 009176 418 MAGAFMLLLNET-----N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH 491 (541)
Q Consensus 418 ~~~~~ll~~~~~-----~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD 491 (541)
..++.++..... + ..+++...+.|++.|...+...++++|++..|+.+..+|+...+..+|..+++.+++.++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 74 RAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222 3 4577788899999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 492 KEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 492 ~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
..+ ++.+|.+.+..++++.++...+
T Consensus 154 ~~g-------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 154 TLG-------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred Hhh-------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 754 6899988877776665554444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-06 Score=89.87 Aligned_cols=370 Identities=15% Similarity=0.128 Sum_probs=196.4
Q ss_pred cchhHHHHHHHHHHHHhcCCcc-ccccchHHHHHHhCCChhhHHHHHHhhh-hhcccchhhhhhccccchHHHHHHHHHH
Q 009176 6 NILQWLSLVGAIWLQSINGTNS-NFPAYSSQLKQLLSLSQLQLNNLAFASD-AGKLFGWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 6 ~~~rw~~l~as~~v~~~~Gt~Y-~f~~ys~~lk~~l~~sq~~l~~l~~~~~-~G~~~G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
-.+||+.|++..++..++|-.. .|+.-+.+...-+| |.+..+.++.--- +..-+|+++=++.|++|.|..+++|++.
T Consensus 40 y~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~l 118 (480)
T KOG2563|consen 40 YPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVL 118 (480)
T ss_pred chhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHH
Confidence 4689999999999988887765 46677777788888 4444555554443 4446699999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccchHH--HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhh--hHHHHHHHH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYA--HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLG--LSAKLYTSA 158 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w--~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~G--LSaaift~i 158 (541)
+.+|= ++.+.-+..--++.+| ++-.--.+++.+|-++---.=+-+.-.||. +|.+|..+ |.+| |+.++=..+
T Consensus 119 n~iGa-~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~--~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 119 NGIGA-WIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL--GVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHH-HHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH--HHhcchHHHHHHhhc
Confidence 99994 4444444431123456 444445555555555433323445566754 68777653 3344 444444333
Q ss_pred HHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhccccc
Q 009176 159 VNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSK 238 (541)
Q Consensus 159 ~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~ 238 (541)
-..+.| - +.+ .++.....+..++.+.. +++.++
T Consensus 196 ppilV~-------------------------------~-~~~------~~~~~~~~~~~f~~~~~-l~~l~l-------- 228 (480)
T KOG2563|consen 196 PPILVP-------------------------------S-SKD------SEDNSWLFFTLFLGVEC-LAALLL-------- 228 (480)
T ss_pred cceecC-------------------------------C-CCC------cchhHHHHHHHHHHHHH-HHHHHH--------
Confidence 333332 1 100 11111111212221211 111111
Q ss_pred ccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCC
Q 009176 239 LKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDG 318 (541)
Q Consensus 239 ~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (541)
++++-.+. ++ |+.++ +.... .+.+.
T Consensus 229 --------------------~l~~~~~~--------~~-----P~tPp-----------------s~s~~---~~~~~-- 253 (480)
T KOG2563|consen 229 --------------------ALVLFVFT--------KK-----PPTPP-----------------SASQA---ALQDA-- 253 (480)
T ss_pred --------------------HHHHHhcC--------CC-----CCCCC-----------------chhHh---hhhcC--
Confidence 11110000 00 00000 00000 00000
Q ss_pred ccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-h
Q 009176 319 IYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-G 395 (541)
Q Consensus 319 ~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s 395 (541)
.--.+.++.+++.+|-++.+.+.++.|.=-.....+-+...--||+ .+-..-.+.-+...+|-+.+|.+ |
T Consensus 254 -------~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~D 326 (480)
T KOG2563|consen 254 -------SFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIAD 326 (480)
T ss_pred -------cHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhh
Confidence 0114678999999999999999776553111111222122223665 33344445556677888888877 5
Q ss_pred hhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc----cchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh
Q 009176 396 YFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET----NVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV 471 (541)
Q Consensus 396 ~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~----~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~ 471 (541)
|. | +| +..++......+..++.+..... ...++....+.|++-=+..++.--+-.|.=.+.-=++--|++
T Consensus 327 kt--k-~f---k~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll 400 (480)
T KOG2563|consen 327 KT--K-KF---KLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLL 400 (480)
T ss_pred hh--h-hH---HHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeE
Confidence 54 2 21 22322222222222233333222 135777777888887666666555555555555566777777
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcC
Q 009176 472 VANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 472 ~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
.+.-.+=+.+...+-+..-+..+
T Consensus 401 ~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 401 NLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred EeehhHHHHHHHHHHHHHhhccC
Confidence 76666666666666665554444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=93.11 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=118.7
Q ss_pred ccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc
Q 009176 353 LGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN 430 (541)
Q Consensus 353 ~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~ 430 (541)
..-++.-.+.+|.++++.+ +....++++.+...+|.+.+|.++|.. +|...+....++..++.++.....+
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-------Grr~~l~~~~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-------GRRPVLITGALIFTLACAATLFTTS 103 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-------CchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3345556778888888875 456788999999999999999985532 4444444455556666555555555
Q ss_pred -chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccH
Q 009176 431 -VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYR 509 (541)
Q Consensus 431 -~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~ 509 (541)
..++++-.+.|++-|.......+++.|.|..++-+...+++..+..+|..+++.+.+.+.|.. + +|
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-g------------w~ 170 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-H------------WK 170 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------HH
Confidence 457777788899888767777889999999999999999999999999999988888887653 3 89
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009176 510 STFILWGSFCLFGTFLALI 528 (541)
Q Consensus 510 ~tF~i~~~~~~~g~~lsl~ 528 (541)
..|++.+++.+++.++.+.
T Consensus 171 ~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998887777665443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=93.23 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHH-hhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGAL 414 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~ 414 (541)
+++|.+.+..++....--++..-+.... +.+|++ +....+++..+...++++..|.++|-. +|...+...
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-------g~k~~~~~~ 79 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-------DKKRYMLLA 79 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CcchhHHHH
Confidence 4588888777665332222233344433 467876 456777777788888889988884432 222333334
Q ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc
Q 009176 415 MAPMAGAFMLLLNETNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE 493 (541)
Q Consensus 415 ~~~~~~~~ll~~~~~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~ 493 (541)
.+...++.+++.+.++. .+++.-.+.|.+++...+..++.++|.++.++.+..+|+......+|..+++.+.|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-- 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-- 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44444555555554442 344455677888888888899999999999999999999999999999999999999985
Q ss_pred CCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 494 GHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 494 ~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
.. ++.+|.+.+.+++++.++..+...|
T Consensus 158 ~g------------~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 158 QS------------INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred hc------------cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 23 7899999988888876665554333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=91.92 Aligned_cols=179 Identities=12% Similarity=-0.019 Sum_probs=119.1
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
.++. +...+|.+.+.+.+... .........+..++.|.+ +.....++..+...+|.+..|.+.|-. +|.
T Consensus 21 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-------g~~ 91 (438)
T TIGR00712 21 YKRL-RWQVFLGIFFGYAAYYL-VRKNFALAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-------NPR 91 (438)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH-HhccHHhhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-------CCc
Confidence 3443 44555555554433322 111112222333445765 456678888888999999999885432 222
Q ss_pred HHHHHHHHHHHHHHHHHhhc----cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNE----TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~----~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
..+....++.+++.++.... .+ ..+++.-.+.|++.|..++.....++|.|..|+-|+..|+..++..+|+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~ 171 (438)
T TIGR00712 92 VFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPP 171 (438)
T ss_pred eehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHH
Confidence 33333444445544443322 12 23555667889999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
.+.+...+.+.. +|.+|++.+.++++..++.+++.
T Consensus 172 ~l~~~~~~~~~~------------w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 172 LLVLLGMAWFND------------WHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 888776665545 89999999998888776666554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=91.00 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=116.5
Q ss_pred hHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHH
Q 009176 361 LGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTST 437 (541)
Q Consensus 361 ~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s 437 (541)
++++.+++|.+ +....+++..+...++.+..|.+.|- ++|...+....++.+++.++.....+ ..+++.-
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-------~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 104 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-------VERRKLLIGLFVLFIASHVLSALAWNFTVLLISR 104 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 67888888875 45667788888888888888877331 25666666666666666666555555 4566677
Q ss_pred HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 438 AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 438 ~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
.+.|++.|..++...++++|.+..|+-+...|+...+..+|..+++.+.+.+.|..+ +|.+|.+.+.
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-------------w~~~f~~~~~ 171 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-------------WRTTFLAIGG 171 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-------------HHHHHHHHHH
Confidence 889999999899999999999999999999999999999999999999999887543 7999999998
Q ss_pred HHHHHHHHHHHH
Q 009176 518 FCLFGTFLALIL 529 (541)
Q Consensus 518 ~~~~g~~lsl~l 529 (541)
++++..++....
T Consensus 172 ~~~l~~~~~~~~ 183 (390)
T PRK03545 172 GALITLLLLIKL 183 (390)
T ss_pred HHHHHHHHHHHh
Confidence 887776555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-07 Score=92.65 Aligned_cols=147 Identities=19% Similarity=0.183 Sum_probs=114.9
Q ss_pred HHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHH
Q 009176 363 QIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAI 439 (541)
Q Consensus 363 ~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~l 439 (541)
.+.+++|.+ +.....++..+.+.++.+..|.+.|.. +|...+....+..+++.++..+..+ ..+.+...+
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-------GRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFL 94 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccc
Confidence 566777765 456788888888999999988884422 4555666666666666333333233 357778889
Q ss_pred HHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHH
Q 009176 440 IGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFC 519 (541)
Q Consensus 440 iG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~ 519 (541)
.|++.|..++...++++|.+..|+.+...++......+|..+++.+++.++|..+ ++..|++.+.++
T Consensus 95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-------------~~~~~~~~~~~~ 161 (352)
T PF07690_consen 95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-------------WRWAFLISAILS 161 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-------------HCCHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-------------cccccccccchh
Confidence 9999999999999999999999999999999999999999999999999986543 688999999999
Q ss_pred HHHHHHHHHH
Q 009176 520 LFGTFLALIL 529 (541)
Q Consensus 520 ~~g~~lsl~l 529 (541)
++..++...+
T Consensus 162 ~~~~il~~~~ 171 (352)
T PF07690_consen 162 LIAAILFILF 171 (352)
T ss_dssp HHHHHHHHCC
T ss_pred hhhhhhHhhh
Confidence 8887754444
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=86.79 Aligned_cols=170 Identities=21% Similarity=0.223 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHH
Q 009176 341 WLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418 (541)
Q Consensus 341 wllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~ 418 (541)
|.+.+..++.....-+.......+.++.+.+ +.+...++..+...++++..|.+.|.. +|..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-------g~r~~~~~~~~~~ 74 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-------GRRRVLLLGLLLF 74 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------CCchhhHHHHHHH
Confidence 3444444333222222333445556666664 456677888888899999999884432 2333444555555
Q ss_pred HHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 009176 419 AGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497 (541)
Q Consensus 419 ~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~ 497 (541)
.++.++.....+ ..+++...+.|++.|..++..++++.|.+..|+.++..++......+|..+++.+++.+.|..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 151 (352)
T cd06174 75 ALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG--- 151 (352)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 666555554444 4577788899999999999999999999999999999999999999999999999999998754
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 498 HNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 498 ~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
++..|.+.+...+++.++...+.
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 152 ----------WRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998888877776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=90.43 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=118.8
Q ss_pred eecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chh
Q 009176 357 FLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VAL 433 (541)
Q Consensus 357 ~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l 433 (541)
+.-.+.++.+++|.+ +.....++..+...+|++..|.+.|.. +|..++....++..++.++.....+ ..+
T Consensus 10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-------GRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-------CChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 445667788888875 456788888999999999999885432 3444444445555555554444444 457
Q ss_pred HHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHH
Q 009176 434 YTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFI 513 (541)
Q Consensus 434 ~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~ 513 (541)
++...+.|++.|.......+++.|.+..|+.+...++......+|..+++.+.+.+.|..+ ++..|.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------------~~~~~~ 149 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-------------WHAIFW 149 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------hHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999998653 799999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009176 514 LWGSFCLFGTFLALIL 529 (541)
Q Consensus 514 i~~~~~~~g~~lsl~l 529 (541)
+.+.++++..++..+.
T Consensus 150 ~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 150 VLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988888776666544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=86.78 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=104.3
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceeecch-HHHHhh-hcCC-cccchhhhhhhcccccccccccchhhhcccCCCCCh
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFLNNL-GQIAES-RGCS-GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~-g~i~~s-lg~~-~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R 407 (541)
.++..++++|+.++...++. ..+....+.. -...+. +|.+ ..+.+..+..+...++-.+++.+.|.. +|
T Consensus 218 ~~~~~~nr~~~~l~~~~~~~-~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~-------gk 289 (428)
T PF13347_consen 218 LRSLFRNRPFRILLLAFFLQ-WLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRF-------GK 289 (428)
T ss_pred hhhhcccchHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHc-------cc
Confidence 47888899999988888775 3333333333 333333 3443 234455566666777777777775433 22
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--cc-chhHHHHHHHHHhhhccchhhHHHhhhhc-------CCCcccchhhhhhhhhhh
Q 009176 408 PASIGALMAPMAGAFMLLLNE--TN-VALYTSTAIIGVCSGAITSISVTTTTELF-------GTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 408 ~~~l~~~~~~~~~~~ll~~~~--~~-~~l~~~s~liG~~yG~~~~l~P~ivse~F-------G~k~fg~nyg~~~~a~~~ 477 (541)
...+....++.+++.+++... .+ ..+++..++.|+++|..+.+.+++.+|.- |.+.-|..+++.....-+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 290 KKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred eeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 333334444455554443333 23 56888889999999999999999999876 577889999999988888
Q ss_pred hHHHHHHHHHHHhhhcC
Q 009176 478 GSFLFGYLAALVYHKEG 494 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~ 494 (541)
|.-+.+.+.|.+-+..+
T Consensus 370 ~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88888777777765543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-05 Score=85.99 Aligned_cols=158 Identities=9% Similarity=0.080 Sum_probs=92.1
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeecchHHHH-hh-hcCCcc-cchhhhhhhcccccccccccchhhhcccCCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-ES-RGCSGT-SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIP 406 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~s-lg~~~~-~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~ 406 (541)
..+++++++.||.+.+.+++.. .+....+.....- +. ++.++. ........+...+|-.+++.+.|.. +
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-------g 292 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLL-TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-------D 292 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHH-HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------C
Confidence 3578899999999877655432 1111111111110 00 111111 1122222344445666666553322 2
Q ss_pred hhHHHHHHHHHHHH-HHHHHhh-ccc-chhHHHHHHHHHhhhccchhhHHHhhhhc-------CCCcccchhhhhhhhhh
Q 009176 407 SPASIGALMAPMAG-AFMLLLN-ETN-VALYTSTAIIGVCSGAITSISVTTTTELF-------GTKNFSVNHNIVVANIP 476 (541)
Q Consensus 407 R~~~l~~~~~~~~~-~~ll~~~-~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~F-------G~k~fg~nyg~~~~a~~ 476 (541)
|...+....+..++ ...+... ..+ ..+++..++.|+++|....+.+++++|.. |.+.-|..+++.....-
T Consensus 293 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~k 372 (444)
T PRK09669 293 RVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIK 372 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHH
Confidence 22222222222222 2222222 223 24667778999999999999999999987 88888999999998899
Q ss_pred hhHHHHHHHHHHHhhhcCC
Q 009176 477 IGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 477 ~Gs~l~~~laG~iyD~~~~ 495 (541)
+|.-+++.+.|.++|..+=
T Consensus 373 lg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 373 LGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999987653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=89.45 Aligned_cols=172 Identities=10% Similarity=0.051 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHHhhc----ccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHH
Q 009176 337 RVDFWLYFFVYFSGAT----LGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS 410 (541)
Q Consensus 337 ~~~Fwllf~~~~~g~g----~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~ 410 (541)
+.++|++.+.+.++.. +.-++.-.+.++.++++.++ ....++...+...++.+..|.+.|.. +|...
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-------g~r~~ 80 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-------GRRPV 80 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CChHH
Confidence 4677777777766654 23334446677888888763 45677888888889999988884432 33333
Q ss_pred HHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHH
Q 009176 411 IGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
+.....+..++.++.....+ ..+++...+.|++.|...+..++.+.|.|..++-....++......+|..++|.+.+.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 81 MLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555444444444 45777788999999998899999999999888877777888777778888889999998
Q ss_pred hhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 490 YHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 490 yD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
.|.. . ++.+|++.++++++..+....
T Consensus 161 ~~~~-~------------w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 161 IHVL-P------------WRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHcc-C------------ccHHHHHHHHHHHHHHHHHHH
Confidence 8753 3 799999988888777655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=75.42 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=98.6
Q ss_pred hhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHh
Q 009176 377 VSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTT 455 (541)
Q Consensus 377 Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~iv 455 (541)
.+..++.+.+++...|.+.|.. +|...+........++.++.....+ ..+.+...+.|++.|...+...+.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-------GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666777777777663321 3444444444444455444444444 3466677899999999999999999
Q ss_pred hhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 456 TELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 456 se~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.|.+..++.++..++..+...+|..+++.+.+.+.|..+ |+..|.+.+..++++.++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-------------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999987543 7889999888877776665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=91.39 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=112.5
Q ss_pred HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHH
Q 009176 364 IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAII 440 (541)
Q Consensus 364 i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~li 440 (541)
+.+++|.+ +.....++..+.-.+|.+..|.+.|.. +|...+...+++..++.++.+...+ ..+++.-.+.
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-------G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 106 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-------GARRWIAGIMVLWGIASTATMFATGPESLYLLRILV 106 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------ChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34556664 445678888888888999988874422 5555556566666666665555544 4677888899
Q ss_pred HHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHH
Q 009176 441 GVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCL 520 (541)
Q Consensus 441 G~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~ 520 (541)
|++.|+.++...++++|+|..|+-+...|+...+.++|..+++.+++++.+.+.- .+..=+|.+|++.+..++
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------~~~~gwr~~f~~~~~~~l 179 (412)
T TIGR02332 107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL-------MALKGWQWLFLLEGFPSV 179 (412)
T ss_pred HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCccchhHHHHHHHHHHH
Confidence 9999999988889999999999999999999999999999999999999864210 000018999999888776
Q ss_pred HHHHHHHHH
Q 009176 521 FGTFLALIL 529 (541)
Q Consensus 521 ~g~~lsl~l 529 (541)
+.+++..+.
T Consensus 180 ~~~~~~~~~ 188 (412)
T TIGR02332 180 ILGVMTWFW 188 (412)
T ss_pred HHHHHHhhc
Confidence 655544444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-06 Score=87.93 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHH
Q 009176 340 FWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAP 417 (541)
Q Consensus 340 Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~ 417 (541)
.|++.....++.....++...+.++.+++|.+ +.....++..+...++.+..|.+.|.. +|...+......
T Consensus 10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-------grr~~~~~~~~~ 82 (394)
T PRK11652 10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-------GRRPVILVGMSI 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-------CChHHHHHHHHH
Confidence 45555555555554455666778888899886 456678888899999999999885432 333444444444
Q ss_pred HHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCC
Q 009176 418 MAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHN 496 (541)
Q Consensus 418 ~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~ 496 (541)
..++.++.....+ ..+++...+.|++.|........++.|.+..++.+...++..++..++..+++.++|.+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-- 160 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-- 160 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 5555444444444 4567777889999998888888899999998999999999999999999999999999887543
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 497 AHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 497 ~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
++.+|.+.+.++++..++..+
T Consensus 161 -----------~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 161 -----------WRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHH
Confidence 799999987776655544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-05 Score=87.06 Aligned_cols=339 Identities=17% Similarity=0.139 Sum_probs=188.2
Q ss_pred HHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHH-HHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 009176 36 LKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLV-LLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVL 113 (541)
Q Consensus 36 lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~v-lliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l 113 (541)
+++.+|+...|+|.+.+...+|=.+ =+|+|++.||+|+... ...+.+-.+.+...-| +. ++|.++..-++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~~--s~~~~ialr~l 143 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------VH--SFPGLIALRFL 143 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------Hh--hhHHHHHHHHH
Confidence 8899999999999999999999866 5799999999994433 2223222233333323 11 35777777777
Q ss_pred hccccccccceeeeeecccC--CCCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCc----ccchhhhh-chhhhHhH
Q 009176 114 AGNSICWINTVCYVVTIKNF--PFDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKR----AKLYLLFN-SIFPLLAC 186 (541)
Q Consensus 114 ~g~g~~~~nTa~lvt~v~NF--P~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d----~~~fLlll-a~~p~~v~ 186 (541)
.|.-++- -..+.+..+.|| +++||+..|+.-+..++++.+=+.+...+++ - ++. .=.+++++ +.+....+
T Consensus 144 lGl~es~-~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~-~~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 144 LGLFESG-GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-L-NGSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHhcc-cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-h-cCCCCcCCceeehhHHHHHHHHHH
Confidence 7765441 125666666666 4589999999999999999999999888762 0 011 11122221 12222222
Q ss_pred hhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccccccc
Q 009176 187 VVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVIPLGE 266 (541)
Q Consensus 187 l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~ 266 (541)
++..+++... |. +..|.
T Consensus 221 i~~f~~lp~~-P~------------~~~fl-------------------------------------------------- 237 (495)
T KOG2533|consen 221 IVVFFFLPDN-PS------------KAWFL-------------------------------------------------- 237 (495)
T ss_pred heEEEEecCC-hh------------hcccc--------------------------------------------------
Confidence 2222222211 10 00010
Q ss_pred chhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHHHHHH
Q 009176 267 KIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWLYFFV 346 (541)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~ 346 (541)
. .+|. +.. ..+.+++ +.. ++.++ .+-...+|+++++..|.+.+.
T Consensus 238 ---~----~~ek----~~~--------~~~~~~~---~~~-----~~~~~---------~~~~~~~~a~~dp~vw~~~l~ 281 (495)
T KOG2533|consen 238 ---T----DEEK----ELV--------VERLRES---PSG-----GIENK---------FKWKGFKEALKDPGVWPFSLC 281 (495)
T ss_pred ---c----hHHH----HHH--------HHHHHhc---cCC-----Ccccc---------cCHHHHHHHHhchhHHHHHHH
Confidence 0 0000 000 0000000 000 00000 133677999999999999999
Q ss_pred HHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHH-HHHHHHHHHHHH
Q 009176 347 YFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS-IGALMAPMAGAF 422 (541)
Q Consensus 347 ~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~-l~~~~~~~~~~~ 422 (541)
++|....--..-+-+..+-++ .|++ ++..+-..+.+.+.+|=+++|+++|... ....|.+. .....+...++.
T Consensus 282 ~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~---~~~~~~~~~~~~~~~~~~~g~ 358 (495)
T KOG2533|consen 282 YFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK---TIFARRLLFIVFLCLYAIIGA 358 (495)
T ss_pred HHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence 999876655555556666666 4464 3455666677778888888999966531 01234443 333444455554
Q ss_pred HHHhhcc-cchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhh--hhHHHHHHHHHHHhhh
Q 009176 423 MLLLNET-NVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIP--IGSFLFGYLAALVYHK 492 (541)
Q Consensus 423 ll~~~~~-~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~--~Gs~l~~~laG~iyD~ 492 (541)
..+.... +...+. ++-+|......++++.+..=-++..-|++-+.+... .+.-..+.+.+.+|-.
T Consensus 359 ~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~ 426 (495)
T KOG2533|consen 359 ISLLAAAVLPGAYG-----AFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRS 426 (495)
T ss_pred HHHHhhccchHHhH-----HHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccc
Confidence 4332222 212221 122233334455666666667777778877664433 3334445666777644
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=83.10 Aligned_cols=163 Identities=11% Similarity=-0.004 Sum_probs=107.7
Q ss_pred hhhhchhHHHHHHHHHHhhcccceeecchHHHHhh---hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCCh
Q 009176 333 LMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES---RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s---lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R 407 (541)
..++++.+|+..+.+++-.|.-..+-+......++ .|++ +.+..++.....-.+||+.++.+.|.. ++
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-------g~ 207 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-------SQ 207 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CH
Confidence 46778999998888888776655544444444432 3554 456788889999999999988774322 22
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHH
Q 009176 408 PASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAA 487 (541)
Q Consensus 408 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG 487 (541)
...+....+..++..++.....+........++|++.+..++..-+...+.++. +-++.-+++.+ ..+|+.++|.+.|
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~~~-~~~Gg~i~P~l~G 285 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGILCL-AIVGGAIVPLLQG 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHH-HHhcchHHHHHHH
Confidence 222333333333333333333332223456689999999999988999999885 45666677644 4488999999999
Q ss_pred HHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 488 LVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 488 ~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
.+-|..+ ++.+|.+...
T Consensus 286 ~lad~~g-------------~~~a~~v~~~ 302 (310)
T TIGR01272 286 SLADCLG-------------IQLAFALPVP 302 (310)
T ss_pred HHHHhcc-------------chHHHHHHHH
Confidence 9999765 4777775433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-06 Score=90.83 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=107.7
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+.++.+.+|.+ +.....++..+...++..+.|.+.|.. +|...+....+++.++.++.++..+ ..+++.
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-------GCRPVVIAGGLLASLGMILASFSSNVIELYLT 113 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-------CchHHHHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 356677778775 455667777777788888888884432 3334444445555555555555444 234443
Q ss_pred H-HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHH
Q 009176 437 T-AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 437 s-~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~ 515 (541)
. .+.|++.|..+....+++.|.|. |+-+...|+..++..+|..+++.+.|.+.|.. + ||.+|++.
T Consensus 114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-g------------wr~~f~~~ 179 (455)
T TIGR00892 114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-G------------WRGSFLIL 179 (455)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-C------------hHHHHHHH
Confidence 3 57799999877777788899995 88899999999999999999999999999865 3 89999999
Q ss_pred HHHHHHHHHHHHHH
Q 009176 516 GSFCLFGTFLALIL 529 (541)
Q Consensus 516 ~~~~~~g~~lsl~l 529 (541)
+++++++.++.+++
T Consensus 180 ~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 180 GGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHh
Confidence 99887776554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=89.23 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=113.1
Q ss_pred HHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 009176 362 GQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTA 438 (541)
Q Consensus 362 g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~ 438 (541)
.++.+.+|.+ +.....++..+.+.++.+..|.+.|.. +|...+....++.+++.++.+...+ ..+++.-.
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-------GARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-------CcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4455667775 456788899999999999999884432 2333333344444555444444444 45777888
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
+.|++.|..++..+++++|.+..|+-+...++......+|..+++.+++.+.|..+ ++..|.+.+.+
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~ 157 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-------------WQWAFIIEGVL 157 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887643 79999998888
Q ss_pred HHHHHHHHHHH
Q 009176 519 CLFGTFLALIL 529 (541)
Q Consensus 519 ~~~g~~lsl~l 529 (541)
+++..++.+..
T Consensus 158 ~~~~~~~~~~~ 168 (399)
T TIGR00893 158 GIIWGVLWLKF 168 (399)
T ss_pred HHHHHHHhhhe
Confidence 77766665544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-06 Score=85.35 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=108.4
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
...++.+++|.+ +.....++..+...++.+..|.+.|.. +|...+....++.+++.++.....+ ..+++.
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 106 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-------GRRLPMVTSIVLFSAGTLACGFAPGYITMFIA 106 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345666777875 455678888888888888888884422 3444444444555555555544444 457778
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
-.+.|++.|..++..++.+.|.+..|+-+...++..++..+|..+++.+++.+.+..+.. ++..|.+.+
T Consensus 107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~-----------w~~~f~~~~ 175 (405)
T TIGR00891 107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG-----------WRALFFISI 175 (405)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------HHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999888765422 788888765
Q ss_pred HHHHHHH
Q 009176 517 SFCLFGT 523 (541)
Q Consensus 517 ~~~~~g~ 523 (541)
...++..
T Consensus 176 ~~~~~~~ 182 (405)
T TIGR00891 176 LPIIFAL 182 (405)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=88.04 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=110.8
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+..+.+.+|.+ +.....++..+...+|.+..|.+.|.. +|...+....++..++.++.....+ ..+++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-------GRKRVLLWSILLFSVFTLLCALATNVTQLLIL 111 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 345566677765 345667777788888999888884432 3444444444555555555544444 456677
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
..+.|++.|..++..+++++|.+..++-+...++...+..+|..+++.+.|.+.|..+ ++..|.+.+
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-------------~~~~~~~~~ 178 (398)
T TIGR00895 112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-------------WRSLFYVGG 178 (398)
T ss_pred HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-------------ceeehhhhh
Confidence 8899999999999999999999999999999999999999999999999999987643 678888887
Q ss_pred HHHHHHHHHHHHH
Q 009176 517 SFCLFGTFLALIL 529 (541)
Q Consensus 517 ~~~~~g~~lsl~l 529 (541)
.++++..++....
T Consensus 179 ~~~~~~~~~~~~~ 191 (398)
T TIGR00895 179 IAPLLLLLLLMRF 191 (398)
T ss_pred hHHHHHHHHHHHh
Confidence 6666655554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=85.13 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHHhhcccceeecchHHHHhhhcCCcc-------cchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 337 RVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSGT-------SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 337 ~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~~-------~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
+.+|+.+++..++..-..-++.--+..+.+++|.++. ....++..+...++....|.+.|-. +|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~ 85 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-------GRKI 85 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------CcHH
Confidence 3456676666555422222334456777788887532 3456667777888888888874422 3334
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 410 SIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
.+....+..+++.++.....+ ..+++...+.|++.+ .++...+.+.|.+..++.+...++...+..+|..+++.++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 86 MLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444 356677788888754 567777889999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.|..+ ++.+|.+.+.+++++.++..++.
T Consensus 165 l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 165 LADSYG-------------LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHHhC-------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 988643 79999999888877776665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=84.08 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhhhccchhhHHHhhhh-------cCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 432 ALYTSTAIIGVCSGAITSISVTTTTEL-------FGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 432 ~l~~~s~liG~~yG~~~~l~P~ivse~-------FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
.+.+...+.|+++|..+.+.+++++|. .|.|.-|..|+...+..-+|.-+++.+.|.+.|..+
T Consensus 326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355667789999999999999999999 899999999999999888998888888888887554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.3e-05 Score=81.80 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=97.8
Q ss_pred CCccchhHHHHHHHHHHHHhc-CCccccccchHH-HHHHhCCChhhHHHHHHhhhhhccc-chhhhhhcccc-chHHHHH
Q 009176 3 LNSNILQWLSLVGAIWLQSIN-GTNSNFPAYSSQ-LKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYL-PLWLVLL 78 (541)
Q Consensus 3 ~~~~~~rw~~l~as~~v~~~~-Gt~Y~f~~ys~~-lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~-pp~~vll 78 (541)
||.+.+++..+.....++... -+-|....+-+. +.+.+|+|+++...+-....++..+ .+++|.+.||+ |+|.++.
T Consensus 1 ~~~~~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il 80 (493)
T PRK15462 1 MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM 80 (493)
T ss_pred CCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 455555555555544444332 244545444443 4677999999999887777777766 67999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC---CCceehhhHHHhhhhHHHHH
Q 009176 79 IGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF---DRQVAVGITSSYLGLSAKLY 155 (541)
Q Consensus 79 iGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~---~RG~a~gllk~~~GLSaaif 155 (541)
+|++...+|+..+.. .+. ....+.+.+.+...|+|....|..++ -.+.||+ .|+++.++--....+.+.+-
T Consensus 81 iG~il~~lg~lll~~--~~~--~~~~~~l~l~li~iG~G~~~~~~~al--v~elfp~~~~~R~sgf~i~Y~~~nlG~~ia 154 (493)
T PRK15462 81 LGALLMAIGHVVLGA--SEI--HPSFLYLSLAIIVCGYGLFKSNVSCL--LGELYEPTDPRRDGGFSLMYAAGNVGSIIA 154 (493)
T ss_pred HHHHHHHHHHHHHHH--hhc--chhHHHHHHHHHHHhcccccccHHHH--HHHHCCCCCccccceehHHHHHHHHHHHHH
Confidence 999999999976542 111 11222333334445555443333333 2377986 48888888777776655555
Q ss_pred HHHHHHH
Q 009176 156 TSAVNAI 162 (541)
Q Consensus 156 t~i~~~~ 162 (541)
..+...+
T Consensus 155 p~l~g~L 161 (493)
T PRK15462 155 PIACGYA 161 (493)
T ss_pred HHHHHHH
Confidence 4554444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-06 Score=86.86 Aligned_cols=149 Identities=13% Similarity=0.018 Sum_probs=110.7
Q ss_pred HHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 009176 362 GQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTA 438 (541)
Q Consensus 362 g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~ 438 (541)
..+.+.+|.+ +.....++..+...++.+..|.+.|.. +|.+.+....+++.++.++.....+ ..+++.-.
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-------NPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-------CCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4566677875 456788899999999999999884432 3444444455555555555555444 45667778
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHH-HHHHHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGY-LAALVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~-laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
+.|++.|..++...++++|.+..|+-+...++...+..+|..+++. +.+.+.+. .+ ++..|.+.+.
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~ 158 (379)
T TIGR00881 92 LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YS------------WHWVFIVPGI 158 (379)
T ss_pred HHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CC------------chhHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 55555443 33 7888998888
Q ss_pred HHHHHHHHHHHHH
Q 009176 518 FCLFGTFLALILY 530 (541)
Q Consensus 518 ~~~~g~~lsl~l~ 530 (541)
++++..++.++..
T Consensus 159 ~~~~~~~~~~~~~ 171 (379)
T TIGR00881 159 IAIIVSLICFLLL 171 (379)
T ss_pred HHHHHHHHHheee
Confidence 7777666555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-06 Score=86.79 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred ceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-c
Q 009176 355 LVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-V 431 (541)
Q Consensus 355 lm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~ 431 (541)
-++...+.++.+++|.++ .....++..+...++.+..|.+.|.. +|...+....+++.++.++.....+ .
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-------g~r~~l~~~~~~~~i~~~~~~~~~~~~ 92 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-------GRKPVAIPGAALFIIASLLCSLAETSS 92 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-------CChHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 345556888888888864 44577777888888899989884432 3333444444555555555544444 3
Q ss_pred hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHH
Q 009176 432 ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRST 511 (541)
Q Consensus 432 ~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~t 511 (541)
.+++.-.+.|++.|..+....+++.|.+..|+-+...++......+|..+++.+++.+.|.. . |+..
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g------------~~~~ 159 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-P------------WQSL 159 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-C------------hHHH
Confidence 46667788999999999999999999999999999999999888899888888888887653 3 8999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009176 512 FILWGSFCLFGTFLALILY 530 (541)
Q Consensus 512 F~i~~~~~~~g~~lsl~l~ 530 (541)
|++.+.++++..++.+...
T Consensus 160 ~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 160 FYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999888887777765553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.9e-06 Score=84.46 Aligned_cols=142 Identities=14% Similarity=0.114 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhhcccceeecchHH-HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQ-IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
.||..++.+++......++..-+.+ +.+++|.+ +.....++..+...++.+.+|.+.|.. +|...+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~ 74 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-------GPRYTTTLSL 74 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-------CchHHHHHHH
Confidence 5899999888876666665555564 77888886 456788888999999999999884422 4444455555
Q ss_pred HHHHHHHHHHhhcc-c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 416 APMAGAFMLLLNET-N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 416 ~~~~~~~ll~~~~~-~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
++++++.++..... + ..+++...+.|+.. +.+....++++|.+..|+-+...++......+|..+++.+.+.
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666555554 4 34666778889884 4567778899999999999999888775555555444444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-06 Score=91.01 Aligned_cols=152 Identities=12% Similarity=0.078 Sum_probs=119.1
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+.++.+++|.+ +.....+...+.+.++.+..|.+.|.. +|...+....+++.++.++.....+ ..+.+.
T Consensus 24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (485)
T TIGR00711 24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-------GTRRLFLISTFAFTLGSLLCGVAPNLELMIIF 96 (485)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-------CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 456777888875 456788889999999999999885432 4444444555556666555555544 457778
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
-.+.|++.|...+...++++|.+..++-+...++......+|..+++.++|++.|..+ ++..|++.+
T Consensus 97 ~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-------------w~~~f~~~~ 163 (485)
T TIGR00711 97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-------------WRWIFLINV 163 (485)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-------------ceehhhhhh
Confidence 8899999999999999999999999999999999999999999999999999987533 788999988
Q ss_pred HHHHHHHHHHHHHHh
Q 009176 517 SFCLFGTFLALILYA 531 (541)
Q Consensus 517 ~~~~~g~~lsl~l~~ 531 (541)
.++++..++..+...
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 164 PIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHHcC
Confidence 888777766665533
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-05 Score=87.08 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=114.6
Q ss_pred hhhhch-hHHHHHHHHHHhhcccceeecchHHH-HhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 333 LMLQRV-DFWLYFFVYFSGATLGLVFLNNLGQI-AESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 333 q~l~~~-~Fwllf~~~~~g~g~Glm~I~n~g~i-~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
+.++++ .+|.+++..++...+--.+...+... .+.+|+++ +...++.........-+.+|++.|.. ++|.
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~------~G~r 88 (500)
T PRK09584 15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV------LGTK 88 (500)
T ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchH
Confidence 444565 59999888777643321122233333 35678754 23344444433344445678874420 1455
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHhhhccchhhHHHhhhhcCCCc--ccchhhhhhhhhhhhHHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNETN--VALYTSTAIIGVCSGAITSISVTTTTELFGTKN--FSVNHNIVVANIPIGSFLFGY 484 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~~--~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~--fg~nyg~~~~a~~~Gs~l~~~ 484 (541)
..+....++++++.++++...+ ..++++-.+.|++.|...+..+++++|.|..++ .+..+++.+++..+|+.++|.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 5555555666666666555432 235566678899999999999999999997543 455788888999999999999
Q ss_pred HHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 485 LAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 485 laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
+.|++.|..+ |+..|.+.+...+++.+..+
T Consensus 169 i~g~l~~~~g-------------~~~~F~i~~i~~~i~~i~~~ 198 (500)
T PRK09584 169 ATPWLAAKYG-------------WSVAFALSVVGMLITVVNFA 198 (500)
T ss_pred HHHHHHHhhC-------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999998653 89999998766666654433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00032 Score=77.16 Aligned_cols=389 Identities=15% Similarity=0.114 Sum_probs=205.9
Q ss_pred chHHHHHHhC--CChhhHHHH----HHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 32 YSSQLKQLLS--LSQLQLNNL----AFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 32 ys~~lk~~l~--~sq~~l~~l----~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
+.+.+.+|+| .|.++++.+ -.+--+|..+ .+.+|.+.|++|++..+++..+...++=.++-.+..- ..+
T Consensus 41 ~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~ 116 (485)
T KOG0569|consen 41 INETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSF 116 (485)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhH
Confidence 4567788888 566666655 2233366655 6799999999999999999888888776666555444 245
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCCCC-CceehhhHHHhhhhHHHHHHHHHHH--HhcCCCCCcccchhhhhchh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFPFD-RQVAVGITSSYLGLSAKLYTSAVNA--IETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~-RG~a~gllk~~~GLSaaift~i~~~--~~~~~~~~d~~~fLllla~~ 181 (541)
.++-+-=++.|..++-.....-.-=..-=|++ ||.+..+ .....--|-..+|+... ++ | ++|.=.+++....+
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~-~~~~~~~g~ll~~~~~l~~il--G-t~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTL-LQIGVVIGILLGQVLGLPSLL--G-TEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHH-HHHHHHHHHHHHHHHccHHhc--C-CCcchHHHHHHHHH
Confidence 66666666666554421111111111444764 9876443 33333333444443322 34 1 23444688888899
Q ss_pred hhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccc
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLV 261 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ 261 (541)
|.++.++..+++ |+++ +|+ +.. .+..
T Consensus 193 ~~~~~l~~l~~~----PESP------------k~L-------------l~~---k~~~---------------------- 218 (485)
T KOG0569|consen 193 PALLQLALLPFL----PESP------------KYL-------------LIK---KGDE---------------------- 218 (485)
T ss_pred HHHHHHHHHhcC----CCCc------------chH-------------HHH---cCCH----------------------
Confidence 998888877653 2111 111 110 0000
Q ss_pred cccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhch---
Q 009176 262 IPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRV--- 338 (541)
Q Consensus 262 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~--- 338 (541)
++.+ ...+..... +|++++ .+. ..++.+ +.+.+ .+++.+.+|+++++
T Consensus 219 ----~~A~-----~sl~~y~G~-~~~~~~-~e~-~~~e~~-----------~~~~~-------~~~~~sl~~~~~~~~lR 268 (485)
T KOG0569|consen 219 ----EEAR-----KALKFYRGK-EDVEAE-IEE-MLREIE-----------EEELE-------KKKQISLRQLLKNPTLR 268 (485)
T ss_pred ----HHHH-----HHHHHHhCC-CcchhH-HHH-HHHHHH-----------Hhccc-------cccCCcHHHHhcCcchh
Confidence 0000 000000000 000000 000 000000 00000 02446677777652
Q ss_pred -hHHHHHHHHHHhhcccceeecchH-HHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHH
Q 009176 339 -DFWLYFFVYFSGATLGLVFLNNLG-QIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 339 -~Fwllf~~~~~g~g~Glm~I~n~g-~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~ 413 (541)
..++...+.++-..+|...|+--+ .|-++.|.+ ++...-..+++.|....+.+.++ |++ +|...+..
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~--------gRRpLll~ 340 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL--------GRRPLLLI 340 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCcHHHHH
Confidence 356777777777889988776433 345666775 23445556778888888888877 554 44444443
Q ss_pred HHHHHHHHHHHHh---hcc----cchhH---HHHHHHHHhhhccc-hhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHH
Q 009176 414 LMAPMAGAFMLLL---NET----NVALY---TSTAIIGVCSGAIT-SISVTTTTELFGTKNFSVNHNIVVANIPIGSFLF 482 (541)
Q Consensus 414 ~~~~~~~~~ll~~---~~~----~~~l~---~~s~liG~~yG~~~-~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~ 482 (541)
....+.+..+++. +.. +..-| .+..+..+.|+... ++-.-+++|+|..++=++-..+....+-+..++-
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv 420 (485)
T KOG0569|consen 341 SLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIV 420 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Confidence 4444444322221 111 11111 22233333444332 2334588999999999888887776666666555
Q ss_pred HHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 483 GYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 483 ~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
+..+=.+++.-+. ..|++-.+.|++..+..+...--||
T Consensus 421 ~~~fp~l~~~~g~--------------~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 421 GFAFPPLQNVIGP--------------YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHhcc--------------hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 5444445554332 4666666777777766666655555
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=82.38 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=113.0
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
-..++.+++|.+ +.....++..+...++++..|.+.|.. +|...+.....+.+++.++.+...+ ..+++.
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-------G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-------GPRAVAMLGGILYGLGFTFYAIADSLAALYLT 97 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-------CccchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778875 456789999999999999999884432 3444444445555556555555444 356677
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
-.+.|++.|..+......+.|.|. |+-+...++...+..+|+.+++.+.+.+.|.. + +|..|++.+
T Consensus 98 ~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~------------~~~~f~~~~ 163 (377)
T TIGR00890 98 YGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-G------------VPAAFIYMG 163 (377)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-c------------HHHHHHHHH
Confidence 779999999888888888999995 77899999999999999998877788777653 3 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 009176 517 SFCLFGTFLALILY 530 (541)
Q Consensus 517 ~~~~~g~~lsl~l~ 530 (541)
.++++..++.+.+.
T Consensus 164 ~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 164 IIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHHHHHhe
Confidence 98888777666553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=86.09 Aligned_cols=143 Identities=16% Similarity=0.005 Sum_probs=94.1
Q ss_pred hhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHhhhccchhhHHH
Q 009176 376 LVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNV-ALYTSTAIIGVCSGAITSISVTT 454 (541)
Q Consensus 376 ~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~-~l~~~s~liG~~yG~~~~l~P~i 454 (541)
..+++-.+-.+|-++++++--.+ ++ +.++...+....+..+++.+.++...+. ...+...+.|++.......+-++
T Consensus 255 ~yGll~a~~gvGai~Gal~~~~l-~~--~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 255 GYGLLLAAFGVGAILGALLLPRL-RR--RLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc--ccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556777766663222 22 2344444444555566666666665553 34556678899999888888888
Q ss_pred hhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 455 TTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 455 vse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
+-+.--.+..|.-.++..+....+.-++..+.|.+-|..+. +.++.+.++..+++.++.+....|.+
T Consensus 332 ~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~-------------~~al~~a~~~lll~~~~~~~~~l~~~ 398 (524)
T PF05977_consen 332 VQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV-------------RTALLIAGAALLLSALIALRFPLRQG 398 (524)
T ss_pred HHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-------------HHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 88887788888888877766666666677788888888765 77888887776677766665544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.4e-06 Score=95.01 Aligned_cols=122 Identities=15% Similarity=0.051 Sum_probs=93.6
Q ss_pred ccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHh--hhcc-------
Q 009176 30 PAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFL--THTI------- 99 (541)
Q Consensus 30 ~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~--~~~i------- 99 (541)
+.=-++++++++++.+|.-.|..+.++|..+ .++.|++.||.+++..+.+|.+...+|-++.-+.- .++.
T Consensus 53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 3445789999999999999999999999965 89999999999988888888888888876654431 0000
Q ss_pred ---------------------------------c--cchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhh
Q 009176 100 ---------------------------------S--HLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGI 143 (541)
Q Consensus 100 ---------------------------------~--~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gl 143 (541)
. +..++.+.+.-++.|.|.+...+.+..---.|+|. +|+.+.|+
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 0 11345566788999999998888888777799987 68988887
Q ss_pred HHHhhhhH
Q 009176 144 TSSYLGLS 151 (541)
Q Consensus 144 lk~~~GLS 151 (541)
.-....++
T Consensus 213 ~~~~~~iG 220 (633)
T TIGR00805 213 LESIAVFG 220 (633)
T ss_pred HHHHHHhh
Confidence 55544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0002 Score=78.90 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=132.7
Q ss_pred CCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHH-h-hhcCCcc--cchhhhhhhcccccccccccchhhhcccCCC
Q 009176 329 IGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-E-SRGCSGT--SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHM 404 (541)
Q Consensus 329 ~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~-slg~~~~--~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~ 404 (541)
.+.+++-+.++.+...+.+++-. -|+..+..++.+- + .+|+++. ....-+..+....|=++.|+++|.. +
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-----g 345 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-----G 345 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C
Confidence 35666777777777666655543 4555555555553 3 4788643 3455566778889999999996643 1
Q ss_pred CCh--hHHHHHHHHHHHHHHHHHh--------hcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 405 IPS--PASIGALMAPMAGAFMLLL--------NETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 405 ~~R--~~~l~~~~~~~~~~~ll~~--------~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
+| ...+........+....+. ...+..+|+..+++|++.|+..+..=++.+|+=-..+-+.-||+-.+.
T Consensus 346 -~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~ 424 (477)
T PF11700_consen 346 -PKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT 424 (477)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 23 3332222222222222221 112246999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 475 IPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
.=..++++|.+.|.+-|.+++ .|..|....++.++|.++-..+.
T Consensus 425 gk~ss~lGPll~g~i~~~tg~------------~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 425 GKASSWLGPLLFGLITDATGS------------QRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCC------------chhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998 79999999999999988776553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-05 Score=86.50 Aligned_cols=175 Identities=13% Similarity=-0.015 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHhhcccceeec----chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLN----NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASI 411 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~----n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l 411 (541)
..||..|...+++-..-.+.-+ -..++.+++|.+ +.....+...+...++.+.+|.+.|-. +|.+.+
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-------g~r~~l 97 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-------NTKQFL 97 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-------CccchH
Confidence 4477666666665443221111 245667778875 445678888888889999999884421 344444
Q ss_pred HHHHHHHHHHHHHHh-----hccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHH
Q 009176 412 GALMAPMAGAFMLLL-----NETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYL 485 (541)
Q Consensus 412 ~~~~~~~~~~~ll~~-----~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~l 485 (541)
....++.+++.+++. ...+ ..+++.-.+.|++.|..++...++++|+|..|+.|...|+...+..+|..+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 98 PFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence 333333333322222 2233 3466677789999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 486 AALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 486 aG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+.++.+..-. ...+..|.+.+.++++..++.+.+
T Consensus 178 ~~~~~~~~~~----------~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 178 ALWGANYFFD----------GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHHHHHhhcc----------CcchhHHHHHHHHHHHHHHHHHHh
Confidence 7777654211 015777888777766655555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=84.37 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=114.5
Q ss_pred eeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-ch
Q 009176 356 VFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VA 432 (541)
Q Consensus 356 m~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~ 432 (541)
++.-.+.++.+++|.+ +.....++..+...++.+.+|.+.|.. +|...+....++..++.++.....+ ..
T Consensus 24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (401)
T PRK11043 24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-------GRKPVLLAGLSLFALGSLGMLWVESAAQ 96 (401)
T ss_pred HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-------CCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3444667788888875 456788888888899999999885432 2333344444445555554444444 34
Q ss_pred hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHH
Q 009176 433 LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTF 512 (541)
Q Consensus 433 l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF 512 (541)
+.+.-.+.|++.|.......+.++|.|..++.+..++.......+|..+++.+.|.+.|..+ ++..|
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-------------~~~~~ 163 (401)
T PRK11043 97 LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-------------WQAIF 163 (401)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------hHHHH
Confidence 66667888998888888888999999999998888998888888999999999999998653 79999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009176 513 ILWGSFCLFGTFLALIL 529 (541)
Q Consensus 513 ~i~~~~~~~g~~lsl~l 529 (541)
.+.+.+.++..++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 164 ATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99988877776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=84.75 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=107.0
Q ss_pred HhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHH
Q 009176 365 AESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIG 441 (541)
Q Consensus 365 ~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG 441 (541)
.+.+|.+ ...+..++..+...+.++.+|.+.|-. +|...+....++.+++.++.....+ ..+++...+.|
T Consensus 38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-------g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 110 (400)
T PRK11646 38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-------GAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG 110 (400)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-------CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4566765 345666666777777788888874422 4444555555566666655555444 45777778889
Q ss_pred HhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHH
Q 009176 442 VCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLF 521 (541)
Q Consensus 442 ~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~ 521 (541)
++.|...+...+++.|.+..++.+..+|+......+|..+++.++|.+.+. . ++..|.+.+..+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~--g------------~~~~f~~~~~~~~~ 176 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY--D------------FRLVCATGAVLFVL 176 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h------------HHHHHHHHHHHHHH
Confidence 998888888889999999999999999999999999999999999999832 4 89999998888777
Q ss_pred HHHHHHH
Q 009176 522 GTFLALI 528 (541)
Q Consensus 522 g~~lsl~ 528 (541)
..++..+
T Consensus 177 ~~i~~~~ 183 (400)
T PRK11646 177 AAAFNAW 183 (400)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.4e-05 Score=81.92 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHhhccccee--ec-chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVF--LN-NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~--I~-n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
.-|++...+.++.-..+++ ++ -+.+|.+++|.+ +....+|+..+...++-+..|.+.|.. +|...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-------G~r~~l~~ 79 (393)
T PRK09705 7 LNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-------SERRSVAI 79 (393)
T ss_pred hHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-------CchHHHHH
Confidence 3577777777776665443 22 244566667765 445677777777777777788774421 56666666
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 414 LMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
.+++.+++.++.++.++ ..+++.-.+.|++.|..+...++++.|.|. ++.+...|+...+..+|..+++.+.+.+.+.
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~ 158 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH 158 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777766655 467778899999999999999999999996 7889999998888888888888888888876
Q ss_pred cCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 493 EGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 493 ~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
... +|.+|.+.+...++..
T Consensus 159 ~~~------------w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 159 SET------------WYQTLAWWALPAVVAL 177 (393)
T ss_pred cCC------------HHHHHHHHHHHHHHHH
Confidence 545 7888877766554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=9e-06 Score=86.51 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHH
Q 009176 337 RVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGAL 414 (541)
Q Consensus 337 ~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~ 414 (541)
+++||.+++..++..-...++...+..+.++++.++ ....++...+...+.-..+|.+.|.. +|...+...
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-------grr~vl~~~ 74 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-------PKGRVMFIA 74 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-------CCchhhHHH
Confidence 568999998888865433344555556666776643 34566677777778888888884422 344444444
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 415 MAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 415 ~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
.++..++.++.....+ .++.-.+.|++.|...+..-+++.|++..|+.+...+++.+...+|..++|.++|.++|..
T Consensus 75 ~~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~- 151 (393)
T PRK11195 75 NGIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH- 151 (393)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444333322222 2455578899999999999999999999999999999999999999999999999999852
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
++.+|.+.+.+.+++.++
T Consensus 152 -------------~~~~~~i~~~~~~~~~~~ 169 (393)
T PRK11195 152 -------------AEAALAVCALIYLLAALF 169 (393)
T ss_pred -------------HHHHHHHHHHHHHHHHHH
Confidence 678887777665555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=85.19 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=105.9
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCCh
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPS 407 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R 407 (541)
.++.++++||.+++.+++...+--.+..-+....+ .+|++ +....+++..+...+++...|.+ |++. +|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g-------~r 76 (420)
T PRK09528 4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLG-------LK 76 (420)
T ss_pred chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ch
Confidence 35677889999987777665422122333333333 36775 45779999999999999999988 4442 23
Q ss_pred hHHHHHHHHHHHHH---HHHHhhcc----cc--hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhh
Q 009176 408 PASIGALMAPMAGA---FMLLLNET----NV--ALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIG 478 (541)
Q Consensus 408 ~~~l~~~~~~~~~~---~ll~~~~~----~~--~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~G 478 (541)
+..+. .....++. ........ .. ...++....|.++....+.....+.+. .++.+..||.......+|
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g 153 (420)
T PRK09528 77 KHLLW-IISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLG 153 (420)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHH
Confidence 33222 11111111 11111110 11 122334445555555555555555433 456788889888888999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 479 SFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 479 s~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
..+++.++|.++|. . ++..|++.+.++++..++.+.+
T Consensus 154 ~~i~~~~~g~l~~~--~------------~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 154 WALCAFIAGILFNI--N------------PQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHHHHHhc--C------------chHhHHHHHHHHHHHHHHHhcc
Confidence 99999999999985 3 6788988888877766665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=85.51 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
..++.+++.+++-.-...+....+.++.+.+|.+ +....+++..+...++.+..|.+.|.. +|...+....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~ 92 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-------GRRLAMVISI 92 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHH
Confidence 3555666665553333333333456777778875 356788888888888888888885432 3444444555
Q ss_pred HHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 416 APMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
++.+++.++.....+ ..+++.-.+.|++.|..++...+++.|.|..|+-+.-.++...+..+|..+++.+++.+.|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 171 (496)
T PRK03893 93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW- 171 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 555566555555444 457778889999999999999999999999999999999999999999999999999988743
Q ss_pred CCCCCCccccccccHHHHHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILWGSFC 519 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~~~~~ 519 (541)
. ++..|.+....+
T Consensus 172 ~------------w~~~f~~~~~~~ 184 (496)
T PRK03893 172 G------------WRALFFIGILPI 184 (496)
T ss_pred C------------HHHHHHHHHHHH
Confidence 3 788888754433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=82.64 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 009176 362 GQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTA 438 (541)
Q Consensus 362 g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~ 438 (541)
.++.+++|.+ +.....+...+...+|.+..|.+.|.. +|...+.....+..++.++.....+ ..+.+.-.
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-------GRKRILIVSVALFGLFSLATAQAWDFPSLLVARL 111 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4566777775 356677888888888888888885432 3334343344444444444444444 45667788
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
+.|++.|..++..++++.|.|..|+-++..|+...+..+|..+++.+.+.+.+.. . ++..|++.+.+
T Consensus 112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~ 178 (406)
T PRK11551 112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA-A------------WRHIFYVGGVG 178 (406)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-C------------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887776543 2 78999988776
Q ss_pred HHHHHHHHHH
Q 009176 519 CLFGTFLALI 528 (541)
Q Consensus 519 ~~~g~~lsl~ 528 (541)
.++..++...
T Consensus 179 ~~~~~~~~~~ 188 (406)
T PRK11551 179 PLLLVPLLMR 188 (406)
T ss_pred HHHHHHHHHH
Confidence 6555544443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=85.36 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=116.4
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+.+|.+++|.+ +.+..++...+....+-+.+|.+.|.. +|...+....+++.++.++.....+ ..+.++
T Consensus 28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-------Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~ 100 (495)
T PRK14995 28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-------GFKRLLMLGGTLFGLASLAAAFSPTASWLIAT 100 (495)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 367788888864 456788888888888888888885532 5666666666666666666655555 456777
Q ss_pred HHHHHHhhhccchhhHHHhhhhc-CCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELF-GTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~F-G~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~ 515 (541)
-.+.|++.|..++...+++.+.| ..|+-+...|+......+|..++|.++|.+.|.. + +|..|++.
T Consensus 101 r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-g------------wr~~f~i~ 167 (495)
T PRK14995 101 RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-Y------------WGSVFLIN 167 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C------------hHHHHHHH
Confidence 78999999987777777777777 6789999999999999999999999999998864 3 89999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009176 516 GSFCLFGTFLALILY 530 (541)
Q Consensus 516 ~~~~~~g~~lsl~l~ 530 (541)
..++++..++.....
T Consensus 168 ~~~~~~~~~l~~~~l 182 (495)
T PRK14995 168 VPIVLVVMGLTARYV 182 (495)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888877776665553
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00055 Score=72.24 Aligned_cols=371 Identities=18% Similarity=0.157 Sum_probs=209.7
Q ss_pred CCCc-cchhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhc-ccchhhhhhccccchHHHHH
Q 009176 2 PLNS-NILQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGK-LFGWISGVASVYLPLWLVLL 78 (541)
Q Consensus 2 ~~~~-~~~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~-~~G~~~Gll~d~~pp~~vll 78 (541)
|++. ..++|+.+.+-++|..--=+ .-..+--=+++++.+|+|-++...|.+---+-- .+.+.+.-+.-|++++..+.
T Consensus 2 ~~~~~~~~~~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~ 81 (395)
T COG2807 2 PTADMKGRPLLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLF 81 (395)
T ss_pred CccccccCchHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 4444 33345555555554432111 122344457889999999999888876655544 45788888999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeec--ccCCCCCceehhhHHHhhhhHHHHHH
Q 009176 79 IGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTI--KNFPFDRQVAVGITSSYLGLSAKLYT 156 (541)
Q Consensus 79 iGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v--~NFP~~RG~a~gllk~~~GLSaaift 156 (541)
.+-++..+|-.+ +.. .+.+.+.+-..++|.|..-.| ++.=++ |+||++-|..+|+=.-..++.++.=+
T Consensus 82 ~~Llli~~G~~i------R~~--~~~~~L~~gt~l~G~gIav~n--VLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa 151 (395)
T COG2807 82 LALLLIAAGILI------RSL--GGLPLLFLGTLLAGAGIAVIN--VLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAA 151 (395)
T ss_pred HHHHHHHHHHHH------Hhc--ccHHHHHHHHHHHHhhHHHHH--HhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHh
Confidence 888777777422 211 245778888889999888333 112222 99999999888876666666665544
Q ss_pred HHHHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhccc
Q 009176 157 SAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDL 236 (541)
Q Consensus 157 ~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~ 236 (541)
.+.--+- + .. .... .+++...+
T Consensus 152 ~lavpla-------------------------------------~-------~~--~gW~------~aL~~WAl------ 173 (395)
T COG2807 152 ALAVPLA-------------------------------------Q-------HS--GGWR------GALGFWAL------ 173 (395)
T ss_pred hhhhHHH-------------------------------------H-------hh--ccHH------HHHHHHHH------
Confidence 4332221 0 00 0000 00000000
Q ss_pred ccccCCCCchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCC
Q 009176 237 SKLKTLLPPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDS 316 (541)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (541)
...+.+++-.|- . .| +. . ++. ....
T Consensus 174 ------------~allAl~~WlPq----~---------~r----~~-~-------------~~~-----------~~~~- 198 (395)
T COG2807 174 ------------LALLALLIWLPQ----A---------LR----EQ-A-------------ASI-----------ATKL- 198 (395)
T ss_pred ------------HHHHHHHHHhhh----c---------cc----cc-c-------------ccc-----------cccc-
Confidence 000011111120 0 00 00 0 000 0000
Q ss_pred CCccCCCCccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc
Q 009176 317 DGIYHGLGAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF 394 (541)
Q Consensus 317 ~~~~~~~~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~ 394 (541)
.+-...+|++.=|.+-+-|.+....=-..+.=+.+|..+.|++ ++..++|+..+.....-+..-.+
T Consensus 199 ------------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~l 266 (395)
T COG2807 199 ------------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLL 266 (395)
T ss_pred ------------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 1113466777778776666554433333455778899999996 45678888887776666554333
Q ss_pred -hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhh
Q 009176 395 -GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVA 473 (541)
Q Consensus 395 -s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~ 473 (541)
++. +=.|++.+. ..+.+.++.+=+.+......+....++|+.-|+.|++.-..+.+..-..+-..- +--+
T Consensus 267 a~R~------~n~r~~~~~-~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~--LSgm 337 (395)
T COG2807 267 ARRS------KNQRPLVVL-ALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAA--LSGM 337 (395)
T ss_pred HHHh------cccchHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHH--HHHH
Confidence 331 124555433 334444444322222222233336999999999999988888777654443221 1223
Q ss_pred hhhhhHHH---HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 474 NIPIGSFL---FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 474 a~~~Gs~l---~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
+.++|-.+ +|.+.|+++|.+++ |+..+...+...++-.+..+.
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gs------------w~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGS------------WSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCC------------hHHHHHHHHHHHHHHHHHHhh
Confidence 44455433 48899999999999 999988887765555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=85.39 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=114.9
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
+...++++|+.+++..++.....-+..--+..+.++++.+ +.....+...+...++.+..|.+.|.. +|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-------g~~~ 83 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-------DRKK 83 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-------CCce
Confidence 4445688888887775444322122222344455666554 345677778888888888888774432 1221
Q ss_pred HHHHHHHHHHHHHHHHh-----hccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 410 SIGALMAPMAGAFMLLL-----NETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~-----~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
.+....++.+++.+.++ ...+ ..+++...+.|++.|...+...+.+.|.+..++.+...++..+...+|..+++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 84 LILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred EEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 12112222222222211 1222 34666777889999888888888999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
.++|.++|..+ ++..|.+.+.+++++.++.+
T Consensus 164 ~l~g~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 164 ALGGLLIAAGG-------------VAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHH
Confidence 99999998643 68888888777666555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.9e-05 Score=81.12 Aligned_cols=148 Identities=12% Similarity=0.011 Sum_probs=102.0
Q ss_pred HHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhc----cc-chhHH
Q 009176 363 QIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNE----TN-VALYT 435 (541)
Q Consensus 363 ~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~----~~-~~l~~ 435 (541)
.+.+. |.+ +....++...+...++.+.+|.+.|.. +|..++....++.+++.++.+.. .+ ..+++
T Consensus 54 ~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-------g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 125 (452)
T PRK11273 54 YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 125 (452)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-------CCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence 34444 664 456688899999999999999884422 34444544555555554444332 12 23555
Q ss_pred HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHH
Q 009176 436 STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 436 ~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~ 515 (541)
.-.+.|++.|..++....+++|.|..|+-++..|+...+..+|+.+.+++.+...+.... ++..|++.
T Consensus 126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g------------w~~~f~i~ 193 (452)
T PRK11273 126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND------------WHAALYMP 193 (452)
T ss_pred HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc------------HHHHHHHH
Confidence 667889999998888888999999999999999999999888875554444322222234 89999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009176 516 GSFCLFGTFLALILY 530 (541)
Q Consensus 516 ~~~~~~g~~lsl~l~ 530 (541)
+.++++..++.+++.
T Consensus 194 ~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 194 AFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888877766665554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00045 Score=76.15 Aligned_cols=146 Identities=18% Similarity=0.037 Sum_probs=106.2
Q ss_pred ccchHHHH-HHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 009176 30 PAYSSQLK-QLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHI 107 (541)
Q Consensus 30 ~~ys~~lk-~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l 107 (541)
+.||.... +..+.+....+......-+|..+ +++.|.+.|++|++.+++++.++..++= +..+. ++.+|..
T Consensus 102 ~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~--~~~a~-----a~~~~~~ 174 (521)
T KOG0255|consen 102 SVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFG--ILTAF-----APNYWMF 174 (521)
T ss_pred CcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHH--HHHHH-----hCcHHHH
Confidence 45555554 67778888888888888899977 7899999999999999998877776653 22222 2467999
Q ss_pred HHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhH
Q 009176 108 FLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLAC 186 (541)
Q Consensus 108 ~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~ 186 (541)
+++-++.|.+.+-..+.+.+..+..++. +|+.+..+ ..+-.++.++.....+++- + .=..+......|..+.
T Consensus 175 ~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~--~~~~~~~~~~~~~~~a~~~----~-~Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 175 LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL--GGFFFVGGLMLPAGAAYIT----R-DWRWLFWIISIPSGLF 247 (521)
T ss_pred HHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH--HHHHHHHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999955 79999888 4444555555555555541 2 3444555555566555
Q ss_pred hhc
Q 009176 187 VVT 189 (541)
Q Consensus 187 l~~ 189 (541)
++.
T Consensus 248 ~~~ 250 (521)
T KOG0255|consen 248 LLL 250 (521)
T ss_pred HHH
Confidence 444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.4e-05 Score=80.43 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=103.8
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+..|.+++|.+ +.....++..+...+|.+..|.+.|.. +|...+....++++++.++.....+ ..+++.
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-------GRKPLMMWSIVAYSVGTGLSGLASGVIMLTLS 112 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334555677775 345667777777778888888874421 5556555566666666655555544 457778
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
-.+.|++.|..++...++++|.|..|+-+...|+...+..+|..+++.+.+.+.|.. + +|..|++..
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~------------w~~~f~i~~ 179 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-G------------WRAAFFVGL 179 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-C------------HHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988888887643 3 789998754
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=80.59 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHHhhc-ccceeecchHH-HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHH
Q 009176 337 RVDFWLYFFVYFSGAT-LGLVFLNNLGQ-IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIG 412 (541)
Q Consensus 337 ~~~Fwllf~~~~~g~g-~Glm~I~n~g~-i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~ 412 (541)
|++||.+...+++... .+.... -+.. +.+.+|++ +....+++.++...++++..|.++|.. +|...+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-------grr~~~~ 72 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFP-FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-------GLKKHLL 72 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CcHHHHH
Confidence 5789999655555433 233222 2333 33456775 456799999999999999999985532 3333322
Q ss_pred HHHHHHHHH---HHHHhhcc----c--chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 413 ALMAPMAGA---FMLLLNET----N--VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 413 ~~~~~~~~~---~ll~~~~~----~--~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
..+...+++ .+.+.... + ..+.+..++.|++++...+...+.+.|. .|+.+.+||.......+|..+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~g~ 150 (396)
T TIGR00882 73 WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGWALCA 150 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHHHHHH
Confidence 222222211 11111111 1 1234456778888988888888888775 35556788888888889999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
.++|.++|. + ++..|++.+.++++..++.+.
T Consensus 151 ~~~g~l~~~--~------------~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 151 SIAGILFSI--D------------PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHhhhhcc--C------------chHHHHHHHHHHHHHHHHHHH
Confidence 999999874 3 788999998888777665544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.4e-05 Score=82.14 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=96.7
Q ss_pred hhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc-c-chhHHHHHHH
Q 009176 366 ESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET-N-VALYTSTAII 440 (541)
Q Consensus 366 ~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~-~-~~l~~~s~li 440 (541)
+.+|++ ++....+...+...++-+.+|++ |+++ +|...+.+..+++.++++++.... + ..++++..++
T Consensus 38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRil-------Grrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li 110 (493)
T PRK15462 38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL-------GNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAII 110 (493)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 346775 34567777888888899999998 5442 444444455555666665554332 2 3355566677
Q ss_pred HHhhhccchhhHHHhhhhcCCC--cccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 441 GVCSGAITSISVTTTTELFGTK--NFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 441 G~~yG~~~~l~P~ivse~FG~k--~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
+++.|...+..+++++|.|..+ .-.+-+++.+....+|+.++|.+.|++-|..+ |+..|.+.+..
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-------------w~~~F~iaaig 177 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-------------WAMGFGLAAVG 177 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-------------hHHHHHHHHHH
Confidence 7788888888899999999875 35556777776666899999999999976543 89999887665
Q ss_pred HHHHHHH
Q 009176 519 CLFGTFL 525 (541)
Q Consensus 519 ~~~g~~l 525 (541)
.+++.+.
T Consensus 178 m~l~li~ 184 (493)
T PRK15462 178 MIAGLVI 184 (493)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.6e-05 Score=84.43 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred hchhHHHHHHHHHHhhcc---cceee-cchHHHHhhhcCC-cccchhhhhhhcccccccccccchhhhcccCCCCChhHH
Q 009176 336 QRVDFWLYFFVYFSGATL---GLVFL-NNLGQIAESRGCS-GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPAS 410 (541)
Q Consensus 336 ~~~~Fwllf~~~~~g~g~---Glm~I-~n~g~i~~slg~~-~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~ 410 (541)
+++.|+..|..+.+..-. ++..- +-+.+|.+++|-+ +.+.++...++.+..+-.+.|-+||++ +|.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlf-------GRr~~ 110 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLF-------GRRYF 110 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHh-------cchHH
Confidence 556777776655554322 22222 2357788888875 455666677777777777788888875 88898
Q ss_pred HHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHH
Q 009176 411 IGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
+.+..++.+++.+..+...+ ..+..+.++.|+++|.+.. ....++|+.-.|+-..-+.+......+....++.++..+
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 88888888888888877766 4677788999999998874 566689999988887666555544444444455666555
Q ss_pred hhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 490 YHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 490 yD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
+. +++ +|..|++.+..+.+++++..+.+++.
T Consensus 190 ~~-~~~------------WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 190 AA-HSG------------WRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred cc-CCC------------cchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 43 445 99999999999888888777665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.4e-05 Score=78.98 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=96.2
Q ss_pred ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhc-cc-c--hhHHHHHHHHHhhhccc
Q 009176 373 TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNE-TN-V--ALYTSTAIIGVCSGAIT 448 (541)
Q Consensus 373 ~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~-~~-~--~l~~~s~liG~~yG~~~ 448 (541)
.....++..+...++.+.+|.+.|.. +|...+....++..++.++.... .. . .+++.-.+.|++.|..+
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~-------grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 145 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRF-------GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhh-------hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence 45677888888889999988884432 44444444444455554443222 21 2 57778899999999999
Q ss_pred hhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHH---HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 449 SISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLA---ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 449 ~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~la---G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
....++++|.+..|+-+...++...+..+|..+++.+. +...+ ... +|..|.+.+..+++..+.
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~------------w~~~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN-TLG------------WRIPLGLQLIPAGLLFLG 212 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-Ccc------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777 33322 223 899999966655555444
Q ss_pred H
Q 009176 526 A 526 (541)
Q Consensus 526 s 526 (541)
.
T Consensus 213 ~ 213 (481)
T TIGR00879 213 L 213 (481)
T ss_pred H
Confidence 3
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00033 Score=76.74 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=77.4
Q ss_pred HhcCCcc-ccccchHHHHHHhCCChhhHHHHHHhhhhhcccchhhhhhccccc-----hHHHHHHHHHHH-HHHHHHHHH
Q 009176 21 SINGTNS-NFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYLP-----LWLVLLIGSTLG-LIGYGLQYL 93 (541)
Q Consensus 21 ~~~Gt~Y-~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~G~~~Gll~d~~p-----p~~vlliGa~~~-~~GY~~~~l 93 (541)
.+-|-.+ ....-++-+|+++|+|.+|+..+.....+.-.+..+.|.+.|++| ++..++++.+.. +..|..+-
T Consensus 36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~- 114 (468)
T TIGR00788 36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP- 114 (468)
T ss_pred HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc-
Confidence 3444442 233667899999999999999998889999999888999999998 667777887776 45554332
Q ss_pred HhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCC
Q 009176 94 FLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDR 137 (541)
Q Consensus 94 ~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~R 137 (541)
.. ++ ..+...+.+++.+.+.+..|.++=---++..|+.+
T Consensus 115 -~~---~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~ 153 (468)
T TIGR00788 115 -GK---VS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESP 153 (468)
T ss_pred -cc---cc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCC
Confidence 11 11 12333345777888888777776666667777443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.6e-05 Score=79.11 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHH
Q 009176 341 WLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPM 418 (541)
Q Consensus 341 wllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~ 418 (541)
|.+-+.-|+-..+-.+...-+.||+++++.++ +...||+.+..-.+|-..-..+.+ +++|...+...++++
T Consensus 16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~-------r~~Rr~lLl~~l~lF 88 (394)
T COG2814 16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG-------RLERRRLLLGLLALF 88 (394)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccchHHHHHHHHHHH
Confidence 34444444444566677889999999999864 557999999888887776544422 337778788888888
Q ss_pred HHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCC
Q 009176 419 AGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNA 497 (541)
Q Consensus 419 ~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~ 497 (541)
.++.++.+...+ ..+.++=++.|++-|..|++.-++++|+=..++-+.-=++++++..++-.++.++..++=|.-+
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G--- 165 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG--- 165 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh---
Confidence 999888888777 4577777999999999999999999999999999999999999999999999888888887765
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 009176 498 HNGKCMGMACYRSTFILWGSFCLFGTFLALILYA 531 (541)
Q Consensus 498 ~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~ 531 (541)
+|.+|.+.++++++..+......-
T Consensus 166 ----------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 ----------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999999998887766655533
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=81.10 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=101.1
Q ss_pred HhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHH
Q 009176 365 AESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN--VALYTSTAII 440 (541)
Q Consensus 365 ~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~--~~l~~~s~li 440 (541)
.+.+|.++ +...++......+..=+.+|+++|. .++|...+....+++.+++++.....+ ..++++-++.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr------~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDH------LLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhh------ccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34577653 4456666666666666678888552 126666666666667777666554433 3456777889
Q ss_pred HHhhhccchhhHHHhhhhcCCC--cccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 441 GVCSGAITSISVTTTTELFGTK--NFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 441 G~~yG~~~~l~P~ivse~FG~k--~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
|++.|...+..+++++|.|..+ ..+.-|++.+++..+|+.+++.+.|++-|.. + |+..|++.+..
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-g------------w~~~F~i~~i~ 182 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-G------------YSVTYNLCGAG 182 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-C------------hHHHHHHHHHH
Confidence 9999999999999999999766 3466899999999999999999999997764 3 89999996553
Q ss_pred HHHH
Q 009176 519 CLFG 522 (541)
Q Consensus 519 ~~~g 522 (541)
.+++
T Consensus 183 ~~~~ 186 (489)
T PRK10207 183 LIIA 186 (489)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=76.95 Aligned_cols=154 Identities=12% Similarity=-0.030 Sum_probs=102.8
Q ss_pred hhhhchhHHHHHHHHHHhhcccceeecchHH-HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 333 LMLQRVDFWLYFFVYFSGATLGLVFLNNLGQ-IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
+...+.++|.+++..++..-..-+...-++. +.+++|.+ +....++...+...++++..|.+.|.. +|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-------g~r~ 82 (392)
T PRK12382 10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-------GAKR 82 (392)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-------cchH
Confidence 3445566777776665553322222233332 45677875 456789999999999999999884422 2222
Q ss_pred HHHHHHHHHHHH---HHHHhh-c----cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 410 SIGALMAPMAGA---FMLLLN-E----TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 410 ~l~~~~~~~~~~---~ll~~~-~----~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
.+....+...++ +.+... . .+ ..+++.-.+.|++.+...+...+.+.|.+..|+.+...++..++...|..
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~ 162 (392)
T PRK12382 83 SALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA 162 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH
Confidence 232222222222 112111 1 12 34677778999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 009176 481 LFGYLAALVYHKE 493 (541)
Q Consensus 481 l~~~laG~iyD~~ 493 (541)
+++.+++.+++..
T Consensus 163 ~g~~~~~~l~~~~ 175 (392)
T PRK12382 163 AGAPLGLLLHSHF 175 (392)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=76.39 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=82.3
Q ss_pred HHhCCChhhHHHHHHhhhhhc-ccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhcc
Q 009176 38 QLLSLSQLQLNNLAFASDAGK-LFGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGN 116 (541)
Q Consensus 38 ~~l~~sq~~l~~l~~~~~~G~-~~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~ 116 (541)
+.++-+++|+-.|=-.|-+-. .+-.+.|.+.||.|.++.+++|-...++-=. -.++-+ +||.+.+.=.+-|.
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTi--lFafg~-----sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTI--LFAFGN-----SYPMLFVARSLQGV 171 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHH--HHHHcc-----hhHHHHHHHHHhhh
Confidence 334445555666655566655 4488999999999999999999776665422 223333 56777778888999
Q ss_pred ccccccceeeeeecccCCCC--CceehhhHHHhhhhH
Q 009176 117 SICWINTVCYVVTIKNFPFD--RQVAVGITSSYLGLS 151 (541)
Q Consensus 117 g~~~~nTa~lvt~v~NFP~~--RG~a~gllk~~~GLS 151 (541)
|+.+++|+.+---++.||++ ||.|.|+..++.+|.
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG 208 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLG 208 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcc
Confidence 99999999999999999984 799999999998875
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=75.90 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=103.3
Q ss_pred hHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 009176 361 LGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTA 438 (541)
Q Consensus 361 ~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~ 438 (541)
+.++.+++|.+ +.....++..+...++.+..|.+.|.. +|...+....+..+++.+.....+...+++...
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-------GEERSVAAGLLLIAAGILIRSAPGTALLFAGTA 95 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45667778875 456788888999999999988884432 333333333334444444332222245667778
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
+.|+..|...+..|+++.|.| .|+-+...|+...+..+|..+++.+.+.+.|..+.+ +|..|.+.+.+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~-----------w~~~f~~~~~~ 163 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDF-PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGH-----------WQQALAWWALP 163 (355)
T ss_pred HHHHHHHHHhccchHHHHHhC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHH
Confidence 899999998999999999999 578899999999999999999988888887765432 78888888766
Q ss_pred HHHHH
Q 009176 519 CLFGT 523 (541)
Q Consensus 519 ~~~g~ 523 (541)
++++.
T Consensus 164 ~~~~~ 168 (355)
T TIGR00896 164 ALLAL 168 (355)
T ss_pred HHHHH
Confidence 55443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=77.34 Aligned_cols=148 Identities=14% Similarity=0.008 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGAL 414 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~ 414 (541)
...|.....+.+..+.+ +..+-+.++.+++|.+ +....++...+...++.+.+|.+ |++ +|...+...
T Consensus 14 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~--------g~k~~l~~~ 84 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDG-LEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEII--------GPLKTMMIG 84 (402)
T ss_pred hhhHHHHHHHHHHHhhh-hHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHHHHHHH
Confidence 33444444444444445 3334556677788875 56678899999999999999888 443 344444444
Q ss_pred HHHHHHHHHHH---hhc-cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhH-HHHHHHHHH
Q 009176 415 MAPMAGAFMLL---LNE-TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGS-FLFGYLAAL 488 (541)
Q Consensus 415 ~~~~~~~~ll~---~~~-~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs-~l~~~laG~ 488 (541)
.++.+++.++. ... .+ ..+++...+.|++++.......+.+.|.+..|+-+..-|+...+..+|. .+++.++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 85 LLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444443322 222 22 3456667778998888777777888899999999999999999999996 567888899
Q ss_pred HhhhcC
Q 009176 489 VYHKEG 494 (541)
Q Consensus 489 iyD~~~ 494 (541)
++|..+
T Consensus 165 l~~~~g 170 (402)
T TIGR00897 165 AIPAFG 170 (402)
T ss_pred cccccc
Confidence 987644
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00026 Score=77.46 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=95.0
Q ss_pred hHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHH
Q 009176 361 LGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTST 437 (541)
Q Consensus 361 ~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s 437 (541)
+..+.+++|.+. .....+...+...+|.+.+|++.|.. +|.+.+....++.+++.++.+...+ ..+++.-
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-------G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r 131 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-------GPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVR 131 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 345666778753 33455666667778889989885422 3444444455555555555555444 3455666
Q ss_pred HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHH----HHHHHHHhhhcCCCCCCCccccccccHHHHH
Q 009176 438 AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLF----GYLAALVYHKEGHNAHNGKCMGMACYRSTFI 513 (541)
Q Consensus 438 ~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~----~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~ 513 (541)
.+.|++.|... .....++|.|-.|+-|.-.|+......+|+.++ +.+...+.+... .+..=+|.+|+
T Consensus 132 ~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~--------~~~~gWr~~f~ 202 (476)
T PLN00028 132 FFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA--------PSFTAWRIAFF 202 (476)
T ss_pred HHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------cchhhhHHHHH
Confidence 78898887643 455678999999999999888765444555444 444333333210 00001899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009176 514 LWGSFCLFGTFLALIL 529 (541)
Q Consensus 514 i~~~~~~~g~~lsl~l 529 (541)
+.++++++..++.+++
T Consensus 203 i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 203 VPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766665544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=79.51 Aligned_cols=126 Identities=15% Similarity=0.009 Sum_probs=98.5
Q ss_pred CccccccchHHHHHHhCCChhh-HHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 009176 25 TNSNFPAYSSQLKQLLSLSQLQ-LNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHL 102 (541)
Q Consensus 25 t~Y~f~~ys~~lk~~l~~sq~~-l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~ 102 (541)
-.-..+.=.|.|++.+|+|.+| .+.|.-+...|-.+ -+++|++.||+|++.++.++.+...+-..+.-. .+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f--a~----- 113 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL--GT----- 113 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH--HH-----
Confidence 3445566688999999999999 88999999988855 899999999999999999888766665544433 11
Q ss_pred hHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHH
Q 009176 103 SYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSA 158 (541)
Q Consensus 103 ~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i 158 (541)
+++.|.+.-++-|.+++... ++...-.+.||+ +||+++|+.-+..-++.++=..+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888999998777 777777799998 79999998877665555443333
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00023 Score=76.76 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh-hhhhhhhHHHHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV-VANIPIGSFLFGYLA 486 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~-~~a~~~Gs~l~~~la 486 (541)
+.+.+..++|++=.+..+...+ ..+.+.=.+=|+-++...--.-=.+++.|..|-.++.|.+. .++..+|..+++.++
T Consensus 290 ~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~ 369 (412)
T PF01306_consen 290 NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLA 369 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344444455555555555554 45666667888888887777778899999999989999886 589999999999999
Q ss_pred HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 487 ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 487 G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
|++||+-+ |+.+|++++++.+..++++.++..+.||
T Consensus 370 G~lyd~~G-------------~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 370 GYLYDRIG-------------FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HhhHhhcC-------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 99999986 7999999999999899999888666655
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=78.52 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=108.7
Q ss_pred hhcccceeecc-hHHHHhhhcCCccc-chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh
Q 009176 350 GATLGLVFLNN-LGQIAESRGCSGTS-SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN 427 (541)
Q Consensus 350 g~g~Glm~I~n-~g~i~~slg~~~~~-~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~ 427 (541)
..|...+.++. +....+..|.+... -..++++.. ..+++++|.+.|...+.+++ .|+.++...++.++++...+++
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i~~~~~~~~~a~ 100 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLG-RRRGWLLATQLLLLVAIAAMGF 100 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 33333444554211 122333333 26788888884432222222 2334455555556555544443
Q ss_pred cc---c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccc
Q 009176 428 ET---N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCM 503 (541)
Q Consensus 428 ~~---~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~ 503 (541)
.. + ..+++...+.|++.+.+-....+++.|+|-.|+.+..-++...+..+|..+++.+.+.+.|....
T Consensus 101 ~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G-------- 172 (491)
T PRK11010 101 LEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG-------- 172 (491)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------
Confidence 32 2 24666778999999999999999999999999999999999999999999999899999884334
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHH
Q 009176 504 GMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 504 G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
+|..|++.+.++++..+..+.
T Consensus 173 ----Wr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 173 ----WQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999888777665554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=71.28 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhhhccchhhHHHhhhhcC--CCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccH
Q 009176 432 ALYTSTAIIGVCSGAITSISVTTTTELFG--TKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYR 509 (541)
Q Consensus 432 ~l~~~s~liG~~yG~~~~l~P~ivse~FG--~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~ 509 (541)
.+.+..+++|++|....++=-+++++.=- .++.|..-|+++.+..++-.+-....|.+.+..+++ -.
T Consensus 382 ~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~-----------~~ 450 (477)
T TIGR01301 382 SALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG-----------NL 450 (477)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------Ce
Confidence 46667889999999999999999999888 578999999999999998888887888866666653 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 510 STFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 510 ~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
.+|.+.++..+++.++++++.-|+|+
T Consensus 451 ~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 451 PAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 78888888899999999988777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00085 Score=74.16 Aligned_cols=136 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred hhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccc
Q 009176 45 LQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINT 123 (541)
Q Consensus 45 ~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nT 123 (541)
++...+....++|..+ .+++|.+.|++|++..++++.+...+|...+..+. .++.+.+.=++.|.|.+..+-
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhccchhhhhh
Confidence 4668999999999966 89999999999999999999999999999888776 457778888889999887664
Q ss_pred eeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCc--ccchhhhhchhhhHhHhhccce
Q 009176 124 VCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKR--AKLYLLFNSIFPLLACVVTSPV 192 (541)
Q Consensus 124 a~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d--~~~fLllla~~p~~v~l~~~~~ 192 (541)
.+-+-...-=|. .||..+++..-... -|-.+..+...+.+ ++ .=...+.++..|.++-.+++++
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~----~~~~~Wr~~~~~~~i~~~~~~~~~~~ 228 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTS----KVYAGWRIPLGLALIPAVILALGMLF 228 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhc----cCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 433333333366 79999998888877 56666656565552 22 3446777777888777776444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00024 Score=75.30 Aligned_cols=148 Identities=13% Similarity=0.011 Sum_probs=104.2
Q ss_pred hHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHH
Q 009176 361 LGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTST 437 (541)
Q Consensus 361 ~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s 437 (541)
+.++.+++|.++ .....+.+.+...++.+..|++.|.. +|...+...+.....+.+......+ ..+.+.=
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-------grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-------FKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456777787753 45677788888889999999884432 3334333333333333322222223 4577777
Q ss_pred HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 438 AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 438 ~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
.+.|++.|..... .+.++|.|-.|+-+...+++..+.++|..+++.+.+.+-+.. . +|..|++.+.
T Consensus 87 ~l~G~g~~~~~~~-~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-g------------Wr~~f~~~~~ 152 (368)
T TIGR00903 87 LLAALGQPFLLNA-FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-G------------LQLLIIPIAA 152 (368)
T ss_pred HHHHhHhHHHHHH-HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c------------hHHHHHHHHH
Confidence 8899998865433 444589999999999999999999999999998888887643 3 8999999988
Q ss_pred HHHHHHHHHHHH
Q 009176 518 FCLFGTFLALIL 529 (541)
Q Consensus 518 ~~~~g~~lsl~l 529 (541)
++++..++..+.
T Consensus 153 l~~~~~~~~~~~ 164 (368)
T TIGR00903 153 VAAAGIILVLAA 164 (368)
T ss_pred HHHHHHHHHHHH
Confidence 887776665544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=80.15 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=92.3
Q ss_pred hcCCccccccchHHH-HHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH-HHHHHHHHHhhhc
Q 009176 22 INGTNSNFPAYSSQL-KQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL-IGYGLQYLFLTHT 98 (541)
Q Consensus 22 ~~Gt~Y~f~~ys~~l-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~-~GY~~~~l~~~~~ 98 (541)
.....|.+..|.|.. ++.+|++..+...+.....+|..+ .++.|.+.||+|++.++.+|++... .++........+
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~- 340 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN- 340 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 345567777788874 567899988777666667777766 5678999999999998888886433 344333322221
Q ss_pred cccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhh
Q 009176 99 ISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLF 177 (541)
Q Consensus 99 i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLll 177 (541)
..+++.+..++.|.+.............+.||. .||++.|+.-...-+.|.+...+...+.. . .++. ....+
T Consensus 341 ----~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~-~-~~~~-~~~~~ 413 (490)
T PRK10642 341 ----VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE-S-TQNL-MMPAY 413 (490)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCc-hHHHH
Confidence 223333333333322111111111122257988 59999998665544455555555544431 0 0111 11222
Q ss_pred hchhhhHhHhhccceee
Q 009176 178 NSIFPLLACVVTSPVVR 194 (541)
Q Consensus 178 la~~p~~v~l~~~~~ir 194 (541)
+...+.+++++..++++
T Consensus 414 ~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 414 YLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33446666666666653
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00022 Score=75.11 Aligned_cols=148 Identities=11% Similarity=-0.060 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHhhcccceee-cchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 337 RVDFWLYFFVYFSGATLGLVFL-NNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 337 ~~~Fwllf~~~~~g~g~Glm~I-~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
++++|++++..++. +.+...+ .-++++.+++|.+ +....++...+.+.++.+..|.+.|-. +|...+..
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-------g~k~~~~~ 76 (381)
T PRK03633 5 TRPVLLLLCGLLLL-TLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-------GFNRSYYL 76 (381)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHH
Confidence 56788888777664 3444433 3567777788875 456788888888889999988874422 44444444
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 414 LMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
..++..++.+......+ ..+.+.-.+.|++.|..++...+.+.|..-.++-+...|....+..+|..+++.+.+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 77 ASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555555555444444 45667778999999988888888888888888889999999999999999999999888664
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=78.48 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=106.6
Q ss_pred HHHhhhcCC-----cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 363 QIAESRGCS-----GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 363 ~i~~slg~~-----~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
++.++.+.+ +.....++..+...+|.++.|.++|.. +|...+.+..++..++.++.++..+ ..+++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-------Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-------GRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-------cchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 344455543 245677788888888999988885532 4555555555556666555555545 457777
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
-.+.|++.|+.+....++++|.++.|+-+..-++...+..+|..+++.+++.+.| +|..|++.+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------wr~~~~~~~ 250 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----------------WRWLQLAVS 250 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------HHHHHHHHH
Confidence 7899999999999999999999999999999999999999998888877765532 799999998
Q ss_pred HHHHHHHHHHHH
Q 009176 517 SFCLFGTFLALI 528 (541)
Q Consensus 517 ~~~~~g~~lsl~ 528 (541)
..+++..++.++
T Consensus 251 i~~~~~~~~~~~ 262 (505)
T TIGR00898 251 LPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHh
Confidence 887777666543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00028 Score=84.75 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=104.5
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHH-hhhcCCcc----cchhhhhhhcccccccccccchhhhcccCCCCC
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCSGT----SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIP 406 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~~~----~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~ 406 (541)
++.+++.+|+.++++.++..-...++..-+.... +..+.++. ++..+++.+...++.+.+|.+.|.. +
T Consensus 3 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-------g 75 (1146)
T PRK08633 3 KNLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-------S 75 (1146)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-------c
Confidence 4578889999999888776433332222222222 22333322 3455566666778888888884432 4
Q ss_pred hhHHHHHHHHHHHHHH---HHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHH
Q 009176 407 SPASIGALMAPMAGAF---MLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLF 482 (541)
Q Consensus 407 R~~~l~~~~~~~~~~~---ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~ 482 (541)
|...+....++.++.. .+.....+ ..+++.-++.|++.|...+...++++|++..++.+...|+..++..+|..++
T Consensus 76 rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg 155 (1146)
T PRK08633 76 KNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAG 155 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHH
Confidence 5554443333222221 12222223 4577788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 009176 483 GYLAALVYHK 492 (541)
Q Consensus 483 ~~laG~iyD~ 492 (541)
+.++|.+.+.
T Consensus 156 ~~l~~~l~~~ 165 (1146)
T PRK08633 156 TALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHh
Confidence 9999999876
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00033 Score=72.51 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=94.7
Q ss_pred HHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHH
Q 009176 364 IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAI 439 (541)
Q Consensus 364 i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~l 439 (541)
+.+++|.+ +....+++..+...+.....|.+ |++. +|..++....+...++.++.+...+ ..+++...+
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQG-------DRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVL 96 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34566765 34566777777777777777776 4431 2333333333333444444444444 335555667
Q ss_pred HHHhhhccchhhHHHhhhhcCCCccc--chhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 440 IGVCSGAITSISVTTTTELFGTKNFS--VNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 440 iG~~yG~~~~l~P~ivse~FG~k~fg--~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
.|...+...+...+++.|....+.-+ ..++.+..+..+|..+++.+.|.+.|..+ ++..|++.+.
T Consensus 97 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-------------~~~~f~~~~~ 163 (375)
T TIGR00899 97 LSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-------------FTVMFLTAAL 163 (375)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-------------cHHHHHHHHH
Confidence 77777777777777778877544333 33678888888999999999999988643 7999999988
Q ss_pred HHHHHHHHHHHH
Q 009176 518 FCLFGTFLALIL 529 (541)
Q Consensus 518 ~~~~g~~lsl~l 529 (541)
++++..++.+..
T Consensus 164 ~~~~~~~~~~~~ 175 (375)
T TIGR00899 164 AFVLCGVLVWLF 175 (375)
T ss_pred HHHHHHHHHHHh
Confidence 777776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=77.83 Aligned_cols=136 Identities=13% Similarity=0.134 Sum_probs=99.6
Q ss_pred cchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh--ccc-chhHHHHHHHHHhhhccch
Q 009176 374 SSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN--ETN-VALYTSTAIIGVCSGAITS 449 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~--~~~-~~l~~~s~liG~~yG~~~~ 449 (541)
....+...+...++.+.+|.+ |++ +|.+.+....++..++.++... ..+ ..+++.-.+.|++.|..++
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~--------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~ 150 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKY--------VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSP 150 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHh--------CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchh
Confidence 345556666677788888877 443 3334444444444444333322 222 3467777899999999999
Q ss_pred hhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 450 ISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 450 l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
..+.+++|+|..|+-+.-.|+...+..+|..+++.+.+.+.|.... ++..|++.+.++++..++.+.+
T Consensus 151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g------------w~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG------------WPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------------CCeehhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986434 8999999988776665554444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00057 Score=72.42 Aligned_cols=171 Identities=8% Similarity=-0.029 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHhhcccce-eecchHH-HHhhhcCCcc--cchhhhhhhc-ccccccccccchhhhcccCCCCChhHHHH
Q 009176 338 VDFWLYFFVYFSGATLGLV-FLNNLGQ-IAESRGCSGT--SSLVSLSSSF-GFFGRLIPSLFGYFFSRSKHMIPSPASIG 412 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm-~I~n~g~-i~~slg~~~~--~~~Vsl~Si~-N~~GRl~~G~~s~~~~~~~~~~~R~~~l~ 412 (541)
..-|.+++..++. +.|.. ...-++. +.+++|.++. ...++...+. ..++.+.+|..||+. +|...+.
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g-------~r~~~~~ 86 (393)
T PRK15011 15 LTSTAFLIVAFLT-GIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRG-------DRKSLIV 86 (393)
T ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------chhHHHH
Confidence 3345555554333 22222 2223333 3456777543 3344444443 334666677766653 3333333
Q ss_pred HHHHHHHHHHHHHhhcccc-hhHHHHHHHHHhhhccchhhHHHhhhhcCCCcc--cchhhhhhhhhhhhHHHHHHHHHHH
Q 009176 413 ALMAPMAGAFMLLLNETNV-ALYTSTAIIGVCSGAITSISVTTTTELFGTKNF--SVNHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 413 ~~~~~~~~~~ll~~~~~~~-~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~f--g~nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
...+...++..+.+...+. .+.+...+.|...+...+...+++.|....++- +..-++...+..+|..+++.++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l 166 (393)
T PRK15011 87 FCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333333444444444332 333333444555556666777777776654432 2233677888899999999999999
Q ss_pred hhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 490 YHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 490 yD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.|.. + +|.+|++.+.++++..++....
T Consensus 167 ~~~~-g------------w~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 167 AMGF-S------------FTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHhc-C------------hHHHHHHHHHHHHHHHHHHHhh
Confidence 9864 3 7999999988887776655443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0005 Score=74.48 Aligned_cols=378 Identities=15% Similarity=0.090 Sum_probs=210.1
Q ss_pred hCCChhhHHHHHHhhhhhcccc-hhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhcccc
Q 009176 40 LSLSQLQLNNLAFASDAGKLFG-WISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSI 118 (541)
Q Consensus 40 l~~sq~~l~~l~~~~~~G~~~G-~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~ 118 (541)
=||+..-...+.-+.++|..+| ++-|.+.|++|++-+...--+...++=...-+...+..+.--.|-+|++=++.|.|.
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 3566667777888888998775 788999999998876544433333333222222222212123666888888888887
Q ss_pred ccccceeeeee---cccCC--CCCceehhhHHHhhh---hHHHHHHHHHHHHhcCCCCCcc---------cchhhhhchh
Q 009176 119 CWINTVCYVVT---IKNFP--FDRQVAVGITSSYLG---LSAKLYTSAVNAIETSSPNKRA---------KLYLLFNSIF 181 (541)
Q Consensus 119 ~~~nTa~lvt~---v~NFP--~~RG~a~gllk~~~G---LSaaift~i~~~~~~~~~~~d~---------~~fLllla~~ 181 (541)
+ +-+=.+ +..+- +.||+-.+...++.| |.|++.|.+-.+.|- +.-+++ =...+.++.+
T Consensus 159 G----GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe-~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 159 G----GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE-KIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred c----CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh-ccCCCCCCchHHHHHHHHHHHHHHH
Confidence 7 322221 23332 469999888888877 678888887777652 111111 1356777777
Q ss_pred hhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhccc
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLV 261 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~ 261 (541)
|+++++.. |..=|....|+ ...+ .+
T Consensus 234 pa~~~ly~----Rl~M~Et~~Y~-------------------------al~~--~~------------------------ 258 (538)
T KOG0252|consen 234 PALLVLYF----RLKMPETARYT-------------------------ALVS--KK------------------------ 258 (538)
T ss_pred HHHHHHHh----hhcCCcchhHH-------------------------HHhh--cC------------------------
Confidence 77655431 11101111000 0000 00
Q ss_pred cccccchhhhhhhhhhhhcccccCCCCcccccccccccCcC-CccccccccCCCCCCCccCCCCccccC--CHHhhhhch
Q 009176 262 IPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVA-TKEEVDHQLRDDDSDGIYHGLGAKEEI--GAMLMLQRV 338 (541)
Q Consensus 262 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~--t~~q~l~~~ 338 (541)
.+ +.. + +.++....++++++. +++.+ .+.+... .-..++. ..+.++-+.
T Consensus 259 ------~~------~a~------~--d~~k~~~~~~~~~~~~~~~~~----~~~~~~~----~F~~~f~~~hg~~Llgt~ 310 (538)
T KOG0252|consen 259 ------LK------QAA------G--DMKKVLSVDIEAESTAESDVP----PPSNSFG----LFSRLFLRWHGKHLLGTA 310 (538)
T ss_pred ------Hh------hhh------h--ccccccccccchhhccccCCC----Ccccccc----hHHHHHHHHHHHHHHHHH
Confidence 00 000 0 000000000100000 00000 0000000 0001112 336677777
Q ss_pred hHHHHHHHHHHhhcccceeecchHHHHhhhcCC-cc---------cchhhhhhhcccc-cccccccchhhhcccCCCCCh
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS-GT---------SSLVSLSSSFGFF-GRLIPSLFGYFFSRSKHMIPS 407 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~-~~---------~~~Vsl~Si~N~~-GRl~~G~~s~~~~~~~~~~~R 407 (541)
-=|.++=+-+-+.+. |.+.|-+++|.. .+ +..--++..+..+ |-.++.++.|.+ +|
T Consensus 311 ~~WFllDiafy~~nL------~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-------GR 377 (538)
T KOG0252|consen 311 GTWFLLDIAFYGQNL------FQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-------GR 377 (538)
T ss_pred HHHHhhhhhhhcccc------HHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-------hh
Confidence 777776665555443 667777877762 21 2223356667776 777877775543 78
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-----chhHHHHHHHH--HhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 408 PASIGALMAPMAGAFMLLLNETN-----VALYTSTAIIG--VCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 408 ~~~l~~~~~~~~~~~ll~~~~~~-----~~l~~~s~liG--~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
.++...-+.+|.+.++.++.+-+ ..+.+.-.+.. ..+|=. +..-.+-+|.|-.+-=|+-||+-...-=.|+.
T Consensus 378 k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn-~ttfivpaE~FParvR~t~hGIsAA~GK~GAi 456 (538)
T KOG0252|consen 378 KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN-ATTFIVPAEIFPARVRSTCHGISAASGKAGAI 456 (538)
T ss_pred HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC-ceeEEeehhhchHHHhhhhhhHHHHhccchHH
Confidence 88887777778777777664433 12222112222 234432 22334557999999999999998877778888
Q ss_pred HHHHHHHHHhhhc---CCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 481 LFGYLAALVYHKE---GHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 481 l~~~laG~iyD~~---~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
++...++++-|++ ..+ ++.+|++.++++.+|.+..+.+-
T Consensus 457 vg~~~F~~~t~~~yp~~~g-----------~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 457 VGAFGFLYLTDHNYPPNIG-----------VRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred HHHHHhhHhhhccCCcccc-----------chHHHHHHHHHHHHhHheeEEee
Confidence 8876666665533 111 79999999999999999988875
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00077 Score=72.77 Aligned_cols=145 Identities=11% Similarity=-0.014 Sum_probs=99.5
Q ss_pred ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhc---------cc----chhHHHHHH
Q 009176 373 TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNE---------TN----VALYTSTAI 439 (541)
Q Consensus 373 ~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~---------~~----~~l~~~s~l 439 (541)
....+++..+...+|-+++|.+.|.. +|...+.+..+++.++.++.+.. .+ ..+.+.-++
T Consensus 57 ~~~~~s~~~ig~~~~~~~~G~l~dr~-------Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 57 LGFCVASALIGCIIGGALGGYCSNRF-------GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 45678888888889999999885532 55555555555555554443321 11 235667789
Q ss_pred HHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHH
Q 009176 440 IGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFC 519 (541)
Q Consensus 440 iG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~ 519 (541)
.|++.|+.++..+++++|.+..|+-|...++...+..+|..+.+.+.+.+.+..... .. +..=+|..|.+.+...
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----~~-~~~gWr~~f~~~~~~~ 204 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS----WL-NTDGWRYMFASEAIPA 204 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc----cc-ccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888765554443221100 00 0011899999887777
Q ss_pred HHHHHHHHHH
Q 009176 520 LFGTFLALIL 529 (541)
Q Consensus 520 ~~g~~lsl~l 529 (541)
++..++.+++
T Consensus 205 ~~~~~~~~~l 214 (479)
T PRK10077 205 LLFLMLLYFV 214 (479)
T ss_pred HHHHHHHHcC
Confidence 6665544433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00049 Score=77.65 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhhcccceeecch--HHHHhhhcCCcc--cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 340 FWLYFFVYFSGATLGLVFLNNL--GQIAESRGCSGT--SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 340 Fwllf~~~~~g~g~Glm~I~n~--g~i~~slg~~~~--~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
+|.+...+.+...+|.++.-++ +++.+++|+++. +...++ ...-..+-+.+|++.|.. +|...+.+..
T Consensus 27 w~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~-------G~R~vllig~ 98 (591)
T PTZ00207 27 FALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYL-------GPRPIFVLSM 98 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-------CcHHHHHHHH
Confidence 5566666666666777766555 667777888643 222222 111122344577774432 5556666666
Q ss_pred HHHHHHHHHHhhc------cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 416 APMAGAFMLLLNE------TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 416 ~~~~~~~ll~~~~------~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
++..++.++.+.. .+ ..+++.-++.|++-|..+.....++.++| +++-|.-.|++..+.++|+.+++.+...
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677776666553 23 34666777889888888888889999999 5788999999999999999988666665
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+++. + ++..|++.+.+.++..++.+.+
T Consensus 178 l~~~--~------------~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 178 FFSD--N------------TSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHH--h------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 6541 2 5778888888777666655554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00067 Score=74.47 Aligned_cols=183 Identities=13% Similarity=0.085 Sum_probs=115.0
Q ss_pred hchhHHHHHHHHHHhhcccceeecc-hHHHHh-hhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHH
Q 009176 336 QRVDFWLYFFVYFSGATLGLVFLNN-LGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPAS 410 (541)
Q Consensus 336 ~~~~Fwllf~~~~~g~g~Glm~I~n-~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~ 410 (541)
-++.+|+-++.+.++-..= +..+- ..++.+ +++.+ +....+++..+...++|+..|.+ |++. +|.+.
T Consensus 32 a~r~l~~s~~~f~~~F~~w-~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G-------~R~v~ 103 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVW-MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFG-------GRRWT 103 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ChHHH
Confidence 3457788777766653221 12221 233333 56665 46678888888899999998888 6553 55554
Q ss_pred HHHHHHHHHHHHHHHhhc-----cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh----hhhhhhhHH
Q 009176 411 IGALMAPMAGAFMLLLNE-----TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV----VANIPIGSF 480 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~-----~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~----~~a~~~Gs~ 480 (541)
... .++.++..++.... .+ ..+++.-.+.|++ |+.|+.....++++|-.|+.|+..|+. .++..++.+
T Consensus 104 ~~~-~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 104 VFS-TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHH-HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 433 33334444444432 23 4577888899998 889999999999999999999999998 455666666
Q ss_pred HHHHHH-HHHhhhcCCCCCCCccc-cccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 481 LFGYLA-ALVYHKEGHNAHNGKCM-GMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 481 l~~~la-G~iyD~~~~~~~~~~C~-G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+.|.+. ..+++.-+.+... .=. +..=.+.++++...+.++..++.+++
T Consensus 182 l~p~~i~~~l~~~~G~~~~~-~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 182 VAPLVIFVPVFAFLGVNGVP-QADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHHHhcccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665544 3355443321000 000 12226777778888777777776655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0005 Score=82.94 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=109.2
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHH-hhhcCC---cccchhhhhh----hcccccccccccchhhhcccCC
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIA-ESRGCS---GTSSLVSLSS----SFGFFGRLIPSLFGYFFSRSKH 403 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~-~slg~~---~~~~~Vsl~S----i~N~~GRl~~G~~s~~~~~~~~ 403 (541)
++++++.+|+.+|+..+++...--+.-..+..+. ..+..+ ....++++.. +...+.-.++|.+.|-.
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~----- 79 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY----- 79 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-----
Confidence 4578899999999888776532111111111111 111111 1113344433 33444555667774322
Q ss_pred CCChhHHHH----HHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhH
Q 009176 404 MIPSPASIG----ALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 404 ~~~R~~~l~----~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs 479 (541)
+|...+. +..+....+.+.....+...+++..++.|++.+..++..-+++.|++..+..+...+++.++..+|.
T Consensus 80 --~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~ 157 (1140)
T PRK06814 80 --DKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI 157 (1140)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH
Confidence 3433321 1111111112212222224688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.+++.++|.+.+..+ ++..|.+.+...+++.++.+.+
T Consensus 158 ~igp~l~g~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 194 (1140)
T PRK06814 158 LLGTIIGGLATISGN-------------FVILVALLMGIAVLGWLASLFI 194 (1140)
T ss_pred HHHHHHHHHHHhccc-------------cHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998643 6888855444444444444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=70.13 Aligned_cols=139 Identities=14% Similarity=0.035 Sum_probs=96.1
Q ss_pred HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHH---hhcc-----c-ch
Q 009176 364 IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLL---LNET-----N-VA 432 (541)
Q Consensus 364 i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~---~~~~-----~-~~ 432 (541)
+.+++|.+ +.....++..+...++.+..|.+.|.. +|...+....++.+++.+.. .... + ..
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-------GPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLL 114 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-------CCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Confidence 55677765 446677888888888888888884422 33333333333333322211 1111 1 13
Q ss_pred hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHH
Q 009176 433 LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTF 512 (541)
Q Consensus 433 l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF 512 (541)
+++.-.+.|++.|.......+.+.|.+..|+.+..-++...+..+|..+++.+++.+.+..+ ++..|
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-------------~~~~~ 181 (399)
T PRK05122 115 LLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG-------------LAGLG 181 (399)
T ss_pred HHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc-------------HHHHH
Confidence 66677899999999999999999999999999999999888888888888999999987532 67777
Q ss_pred HHHHHHHHHH
Q 009176 513 ILWGSFCLFG 522 (541)
Q Consensus 513 ~i~~~~~~~g 522 (541)
.+...++++.
T Consensus 182 ~~~~~~~~~~ 191 (399)
T PRK05122 182 LLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHH
Confidence 7765554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0099 Score=64.03 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhhcccceeecchHHH-Hh-hhcCCccc--chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 340 FWLYFFVYFSGATLGLVFLNNLGQI-AE-SRGCSGTS--SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 340 Fwllf~~~~~g~g~Glm~I~n~g~i-~~-slg~~~~~--~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
|..-++.+-.|.. .+..++-+ +. .+|.++.. ++--..++.-.+|-++.|++||.+ + +|+..+....
T Consensus 257 FLiA~~~~~DGv~----til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf---g---~k~vl~~~lv 326 (438)
T COG2270 257 FLIARFFYIDGVN----TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF---G---SKPVLMIGLV 326 (438)
T ss_pred HHHHHHHHHhhHH----HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C---CceeehHHHH
Confidence 4444444544432 33333332 33 45665433 344455666778999999998754 1 4445444444
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC
Q 009176 416 APMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 416 ~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~ 495 (541)
+.+..++..+....+..+++...++|++.|+..+..=+.-+++.-.++-+.-||+-.+.--.+++++|.+.|.+-|.+++
T Consensus 327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 44444444443333466888899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 496 NAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 496 ~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
-|..+.....+..+|.++-+.+.
T Consensus 407 ------------~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 407 ------------SRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred ------------hhhHHHHHHHHHHhhHhhEEeec
Confidence 68888888888878776655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=81.95 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=110.6
Q ss_pred chHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc--------
Q 009176 360 NLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET-------- 429 (541)
Q Consensus 360 n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~-------- 429 (541)
-+.+|-+.++.+ +....+|...+.+.++-+..|++.|.. +|+.++.+..++++++.++.+.++
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 344555667764 456788888999999888887773321 444555555555666655544331
Q ss_pred -------------------------------------------c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCccc
Q 009176 430 -------------------------------------------N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFS 465 (541)
Q Consensus 430 -------------------------------------------~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg 465 (541)
. ..++++-.+.|++-|..+++.++++.|.+..|+-+
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 1 12556788999999999999999999999999999
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHhhhcC----CCCCC-----CccccccccHHHHHHHHHHHHHHHHHH
Q 009176 466 VNHNIVVANIPIGSFLFGYLAALVYHKEG----HNAHN-----GKCMGMACYRSTFILWGSFCLFGTFLA 526 (541)
Q Consensus 466 ~nyg~~~~a~~~Gs~l~~~laG~iyD~~~----~~~~~-----~~C~G~~CY~~tF~i~~~~~~~g~~ls 526 (541)
...+++..+..+|..+++.++|.+.+... ...++ ..=.-...++..|++.+.+.++..+..
T Consensus 208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888764321 10000 000111247888999988877766543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0062 Score=68.79 Aligned_cols=129 Identities=15% Similarity=0.031 Sum_probs=78.5
Q ss_pred chhHHHHHHHHHHHHhcC--CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSING--TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTL 83 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~G--t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~ 83 (541)
..|.+..++++.+..++. ..+..+.-=+++-..+|=+ .+...+.++..++..+ -.+.|-+.|.+|+|-++++|.++
T Consensus 39 s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l 117 (599)
T PF06609_consen 39 SPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL 117 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence 455666665555544433 2333333345677777765 5666778888888855 78899999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhH
Q 009176 84 GLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGIT 144 (541)
Q Consensus 84 ~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gll 144 (541)
..+|..+..-+ . ..-.++..+.+.|.|.+...-..+. --.--|+ +|+...++.
T Consensus 118 ~vvG~Iv~atA-----~--~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~ 171 (599)
T PF06609_consen 118 GVVGSIVCATA-----Q--NMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIA 171 (599)
T ss_pred HHhHHHHhhcC-----C--cHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHH
Confidence 99998664321 1 2234455566666554322211111 1133354 676655544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0025 Score=67.60 Aligned_cols=405 Identities=13% Similarity=0.077 Sum_probs=209.0
Q ss_pred hcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH-HHHHHHHHHhhhcc
Q 009176 22 INGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL-IGYGLQYLFLTHTI 99 (541)
Q Consensus 22 ~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~-~GY~~~~l~~~~~i 99 (541)
-++-.-.-|..+|.+.+.-+.+..|...|...-+.|+-+ ....|+++|+.|.|...-+-....+ .|| .++
T Consensus 90 d~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~------is~-- 161 (528)
T KOG0253|consen 90 DAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGV------ISG-- 161 (528)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHH------hhc--
Confidence 333333446789999999999999999999999999977 7899999999998765433222221 222 233
Q ss_pred ccchHHHHHHHHHHhccccccccceeeeeecccC-CC-CCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhh
Q 009176 100 SHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNF-PF-DRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLF 177 (541)
Q Consensus 100 ~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NF-P~-~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLll 177 (541)
.+|.+..+|++=.+.|.|-+- . -...+---.| |. ||++-+=.. .+.-....+=-.+.-..-+ +-.-.++++
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~-pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~----~~gwr~~l~ 234 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-L-PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS----NFGWRYLLF 234 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-c-cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----hhhHHHHHH
Confidence 245555677776777766652 0 1111111333 55 677665544 5554444333333332221 224457777
Q ss_pred hchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhh
Q 009176 178 NSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLL 257 (541)
Q Consensus 178 la~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 257 (541)
+.-.|.....++.+- . +.++.+.....++++. ++..- -+... +. . -
T Consensus 235 ~~~~pl~~~a~f~~w---~-~ESpRf~~~~G~~~kA-----------letL~---kiArm-Ng--~-------------q 280 (528)
T KOG0253|consen 235 TSSTPLMFAARFLVW---V-YESPRFYLAKGDDYKA-----------LETLH---KIARM-NG--K-------------Q 280 (528)
T ss_pred HHHhHHHHHHHHHhh---c-ccCcchhhhcCChHHH-----------HHHHH---HHHHh-cC--C-------------C
Confidence 777776554443322 2 2111110001111110 00000 00000 00 0 0
Q ss_pred hccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhc
Q 009176 258 APLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQR 337 (541)
Q Consensus 258 ~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~ 337 (541)
.|+.+... +..++.|+|+ ++.+. ...++.++.+-....-++++-+-++
T Consensus 281 lplgvl~~---------------------------s~~~~~e~e~-~~~~~----~~~~a~ke~rg~~~nLlsp~lrktt 328 (528)
T KOG0253|consen 281 LPLGVLES---------------------------SAIDRQEQEE-SDLDD----SKSSAAKEVRGGTTNLLSPKLRKTT 328 (528)
T ss_pred CCcceeee---------------------------ehhhhhhhhh-hchhh----hhhccccccccchHhhcChHHHHHH
Confidence 11111100 0000111000 00000 0000000000000122444555556
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--------c----------cc-chhhhhhhcccccccccccc-hhh
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--------G----------TS-SLVSLSSSFGFFGRLIPSLF-GYF 397 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--------~----------~~-~~Vsl~Si~N~~GRl~~G~~-s~~ 397 (541)
..-|.+|+.-.+..=.-...+-.+-|++.+.+.+ + .. .=+=+.|..-|-|-++.+++ |++
T Consensus 329 lllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl 408 (528)
T KOG0253|consen 329 LLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL 408 (528)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh
Confidence 6667666655443211112223344444432211 0 00 12234566788899998877 543
Q ss_pred hcccCCCCChhHHHHHHHHHHHHHHHHHhhcc--c---chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh
Q 009176 398 FSRSKHMIPSPASIGALMAPMAGAFMLLLNET--N---VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV 472 (541)
Q Consensus 398 ~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~---~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~ 472 (541)
+|...|+..++++++..+++.... + ..++.+.+.+-.+|+. .-..+-|.|-++-=++--|.-.
T Consensus 409 --------GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqv----aYvYtPEVyPTavRatgvGtcS 476 (528)
T KOG0253|consen 409 --------GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQV----AYVYTPEVYPTAVRATGVGTCS 476 (528)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheE----EEEecCcccchhhhhcchhhhh
Confidence 788888888888887655554332 2 2355555555555554 4456668888888888888888
Q ss_pred hhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 473 ANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 473 ~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
-..-+|+++-|.+| +. .|.+ -..+-.+-+++|+++.+++.++-..||
T Consensus 477 smaRIggI~~p~iA--~~-~e~s------------~sl~i~vy~~~~ilagIavcffPiEtk 523 (528)
T KOG0253|consen 477 SMARIGGIFSPVIA--MR-AELS------------TSLPIFVYGALFILAGIAVCFFPIETK 523 (528)
T ss_pred hHHhhhhhhhhHHH--HH-hccc------------eeehHHHHHHHHHHHHHHheeeeeccC
Confidence 88889999999888 32 2333 355667777888888888877755554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=66.71 Aligned_cols=160 Identities=15% Similarity=0.063 Sum_probs=103.4
Q ss_pred hHHHHhhhcCCcccc-hhhhhhhcccccccccccc-hhhhcccCCCCChhH-HHHHHHHHHHHHHHHHhhccc----chh
Q 009176 361 LGQIAESRGCSGTSS-LVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPA-SIGALMAPMAGAFMLLLNETN----VAL 433 (541)
Q Consensus 361 ~g~i~~slg~~~~~~-~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~-~l~~~~~~~~~~~ll~~~~~~----~~l 433 (541)
+..+.++.|.+.... ..+...+-.. .+++.|.+ |++..|+ .+|.. ++....++++++.+++.+..+ ..+
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~---~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l 86 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPF---FGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL 86 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCC---CCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 344566777764321 2222222222 27777777 6553221 23333 334445555555444443322 235
Q ss_pred HHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHH
Q 009176 434 YTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFI 513 (541)
Q Consensus 434 ~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~ 513 (541)
+....+.+++.+.+....-+++.|.+..|+-+..-|+...+..+|..+++.+++.+++..+.. + .....+|..|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~--~---~~~~~wr~~f~ 161 (356)
T TIGR00901 87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFAN--T---GLITLWGYIFF 161 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c---ccccccHHHHH
Confidence 555567788888888889999999999999999999999999999999999999998765521 1 13456899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009176 514 LWGSFCLFGTFLALIL 529 (541)
Q Consensus 514 i~~~~~~~g~~lsl~l 529 (541)
+.+...+++.++.++.
T Consensus 162 i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 162 WTALLILPGLLVTLFL 177 (356)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9988777766555543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0027 Score=66.90 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=98.8
Q ss_pred hhHHHH--HHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHH
Q 009176 338 VDFWLY--FFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIG 412 (541)
Q Consensus 338 ~~Fwll--f~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~ 412 (541)
+..|.- |+.++++.|. ++.-++...+++|.+ +....+++.++...++.+..|.+ |++. |++ .-+.....
T Consensus 5 ~~~~~~~~~~~~~~~~g~---~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g-~~~--~~~~~~~~ 78 (382)
T PRK11128 5 PTRWLALSYFGYFFAYGV---FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS-QLI--PALRLLAL 78 (382)
T ss_pred ccHHHHHHHHHHHHHHHH---HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc-chH--HHHHHHHH
Confidence 444544 5555544332 233445666777765 45567777777777777776665 4442 100 00112111
Q ss_pred HHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh
Q 009176 413 ALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH 491 (541)
Q Consensus 413 ~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD 491 (541)
..... ........++ ..+++.-.+.|++.++.++...+++.|. .|+.+..+|.......+|..++|.++|.++|
T Consensus 79 -~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 79 -LTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred -HHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1112222233 2355666778999998988888887776 5677888999998889999999999999999
Q ss_pred hcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 492 KEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 492 ~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
..+ +|..|++.+...++.
T Consensus 154 ~~g-------------~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 154 WFG-------------EQAILWILTAGVASM 171 (382)
T ss_pred HcC-------------hhHHHHHHHHHHHHH
Confidence 764 688998777544433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=64.32 Aligned_cols=106 Identities=13% Similarity=-0.005 Sum_probs=65.6
Q ss_pred HHhCCChhhHHHHHHhhhhhccc-chhhhhhcccc----c-hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 009176 38 QLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYL----P-LWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLT 111 (541)
Q Consensus 38 ~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~----p-p~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~ 111 (541)
+.+|++.....++-...-+=..+ -++.|.++|+. | .|.-+++|++...+.+.++|..=...-.....|....++
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 57788888877776666655555 78889999975 3 234567899888888888885421100111245555544
Q ss_pred HHhccccccccc--eeeeeecccCCCCCceehhhH
Q 009176 112 VLAGNSICWINT--VCYVVTIKNFPFDRQVAVGIT 144 (541)
Q Consensus 112 ~l~g~g~~~~nT--a~lvt~v~NFP~~RG~a~gll 144 (541)
+. ..+-+..|+ .++.+.+-+=|++|.++.+.-
T Consensus 118 ~~-~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r 151 (460)
T PRK11462 118 LL-TLLYTVVNIPYCALGGVITNDPTQRISLQSWR 151 (460)
T ss_pred HH-HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHH
Confidence 33 333333333 356666655588898877743
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=71.86 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=97.3
Q ss_pred cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-------chhHHHHHHHHHhhhc
Q 009176 374 SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-------VALYTSTAIIGVCSGA 446 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-------~~l~~~s~liG~~yG~ 446 (541)
....+...+...+|.+..|.+.|.. +|...+....+++.++.++.+...+ ..+++.-.+.|++.|+
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~-------Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKL-------GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 4567777788888888888884432 5666555555555555444333221 2466777899999999
Q ss_pred cchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC----CCCCCccccc------cccHHHHHHHH
Q 009176 447 ITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH----NAHNGKCMGM------ACYRSTFILWG 516 (541)
Q Consensus 447 ~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~----~~~~~~C~G~------~CY~~tF~i~~ 516 (541)
.++..|++++|.|..|+-|...++......+|..+++.++..+...... ..+...|.+. .=+|..|.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 9999999999999999999999999999999998887777655431110 0000112111 12888887766
Q ss_pred HHHHHHHHH
Q 009176 517 SFCLFGTFL 525 (541)
Q Consensus 517 ~~~~~g~~l 525 (541)
..+++..+.
T Consensus 212 ip~~i~~~~ 220 (502)
T TIGR00887 212 VPALLALYF 220 (502)
T ss_pred HHHHHHHHH
Confidence 655554444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0017 Score=71.06 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=127.5
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCCc--ccchhhhhhhcccccccccccc-hhhhcccCCCCChh
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSP 408 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~ 408 (541)
.-++-..+||--|--|.. -++...+-.-|.++.+|+++ +...++.++.+-+.--+++|++ |+++ ++.
T Consensus 23 l~~if~vE~WERFsyYGm---raiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-------G~~ 92 (498)
T COG3104 23 LYLIFFVELWERFSYYGM---RAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-------GTR 92 (498)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chh
Confidence 457777888888777754 23444444445555567753 4457777777777777789999 6554 555
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcc--cchhhhhhhhhhhhHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNET---NVALYTSTAIIGVCSGAITSISVTTTTELFGTKNF--SVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~---~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~f--g~nyg~~~~a~~~Gs~l~~ 483 (541)
..++...+++.++|++++... ...++++.++|+.++|..=+-..++++|++..+.= -.-+++.+++..+|+++.|
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p 172 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP 172 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence 666666677888998887763 36799999999999999999999999999987653 3456677788889999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.+.+++-+.-+ |...|-+++.-..+|.+.-+..
T Consensus 173 ~i~~~~~~~~g-------------~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 173 IITGLLAINYG-------------WHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHHHHHHhhC-------------HHHHHHHHHHHHHHHHHHHHHc
Confidence 99999976533 7888877776555555544444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0038 Score=64.38 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=86.3
Q ss_pred ccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccc---------hhHHHHHHHHHhhhccchhhHHHhh
Q 009176 386 FGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNV---------ALYTSTAIIGVCSGAITSISVTTTT 456 (541)
Q Consensus 386 ~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~---------~l~~~s~liG~~yG~~~~l~P~ivs 456 (541)
+|.+..|.+.|.. +|...+....+++.++.++.....+. .+.+.-.+.|++.|..++..++.++
T Consensus 50 i~~~~~G~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~ 122 (394)
T TIGR00883 50 LGAIVFGHFGDRI-------GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLA 122 (394)
T ss_pred hHHHHhhhhhhhh-------hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhh
Confidence 4556667663321 45555555556666665555544431 2566678999999999999999999
Q ss_pred hhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 457 ELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 457 e~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
|.+-.|+-+...++...+..+|..+++.+.+.+.+.-+.. . ....-+|..|++.+.+++++..+
T Consensus 123 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~--~---~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 123 EYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD--A---LLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--H---hhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887776654311100 0 00011889998887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.003 Score=67.09 Aligned_cols=147 Identities=9% Similarity=0.054 Sum_probs=98.4
Q ss_pred HHhhhcCCcc--cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc----chhHHHH
Q 009176 364 IAESRGCSGT--SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN----VALYTST 437 (541)
Q Consensus 364 i~~slg~~~~--~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~----~~l~~~s 437 (541)
+-++.|++.. ..+.++... ...++++|.+.|....+.++ .|..++..+.+.+++++.++....+ ..+++..
T Consensus 25 ~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~ 101 (402)
T PRK11902 25 WMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLA 101 (402)
T ss_pred HHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3455677532 333333333 46778888874432111111 2333445555556555554444321 1245555
Q ss_pred HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHH
Q 009176 438 AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGS 517 (541)
Q Consensus 438 ~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~ 517 (541)
.+.+++...+.....+++.|.+-.|+-+..-++...+..+|..+++.+++.+.|.... +|..|.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g------------w~~~f~i~a~ 169 (402)
T PRK11902 102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG------------WGNTYLLMAG 169 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC------------HHHHHHHHHH
Confidence 6778888888899999999999999999999999999999999999999999886444 7999999988
Q ss_pred HHHHHHHH
Q 009176 518 FCLFGTFL 525 (541)
Q Consensus 518 ~~~~g~~l 525 (541)
++++..+.
T Consensus 170 ~~l~~~l~ 177 (402)
T PRK11902 170 LMLAGALT 177 (402)
T ss_pred HHHHHHHH
Confidence 77665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0029 Score=67.98 Aligned_cols=122 Identities=13% Similarity=0.005 Sum_probs=85.6
Q ss_pred HHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh---ccc-chhHH
Q 009176 362 GQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN---ETN-VALYT 435 (541)
Q Consensus 362 g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~---~~~-~~l~~ 435 (541)
.++-+.++.+ +.....+...+...++.+..|.+.| +++|...+...+++++++.++... ..+ ..+.+
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~-------r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~ 99 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK-------KLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV 99 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 4444566765 3445556666666666666666532 125666666666666666555422 223 34666
Q ss_pred HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHh
Q 009176 436 STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVY 490 (541)
Q Consensus 436 ~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iy 490 (541)
...+.|++.|...+...+.+.+....|+.+..-|+......+|+.+++.+.+.+.
T Consensus 100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999988888888888888889999998888888775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00094 Score=58.04 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=78.6
Q ss_pred hhcc-cchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCC
Q 009176 56 AGKL-FGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFP 134 (541)
Q Consensus 56 ~G~~-~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP 134 (541)
+|.. .+++.|.+.||++++..+.++.....++....... .++|.+.+..++.|.+.+..++.......+.+|
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 4443 37889999999999999999998888887765532 245777777888888877766666556668888
Q ss_pred C-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 135 F-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 135 ~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
+ +|+++.|+......+++.+-..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 6 6999999999888888888877777665
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0077 Score=65.07 Aligned_cols=124 Identities=17% Similarity=0.068 Sum_probs=85.5
Q ss_pred ccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccc---------hhHHHHHHHHHhhhccchhhHHHhh
Q 009176 386 FGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNV---------ALYTSTAIIGVCSGAITSISVTTTT 456 (541)
Q Consensus 386 ~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~---------~l~~~s~liG~~yG~~~~l~P~ivs 456 (541)
+|.+..|.+.|. ++|...+...++++.++.++.++..+. .+.+.-.+.|++.|+.++...++++
T Consensus 79 ~g~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 79 LGGVVFGHFGDR-------LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred hHHHHHHHHHHh-------hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 444555766432 266676666777777776666665542 2556678999999999999999999
Q ss_pred hhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHH
Q 009176 457 ELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLF 521 (541)
Q Consensus 457 e~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~ 521 (541)
|.+..|+-|..-+....+..+|..+++.+.+.+...-+..+ ....-+|..|++.+..+++
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~-----~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQ-----FLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-----hhccChHHHHHHHHHHHHH
Confidence 99999999988888898999998888766665542211000 0001289999987765444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=71.35 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=114.8
Q ss_pred HhhhhchhHHHHHHHHHHhhcccceeecchHHHHhhhc-------CCcccchhhhhhhcccccccc----cccchhhhcc
Q 009176 332 MLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRG-------CSGTSSLVSLSSSFGFFGRLI----PSLFGYFFSR 400 (541)
Q Consensus 332 ~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg-------~~~~~~~Vsl~Si~N~~GRl~----~G~~s~~~~~ 400 (541)
..-+|+++|..+|+.-.+. |+|.-.+..+ .++....|+++..+..+-.++ +|.+-|..
T Consensus 4 ~aplr~~~Fr~lw~a~~iS---------~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-- 72 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLIS---------NLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-- 72 (524)
T ss_pred cccccCchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence 4568899999999877654 5555444322 245678888888888877754 56663322
Q ss_pred cCCCCChhHHHHHHHHHHHHHHH---HHhhcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFM---LLLNET--N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~l---l~~~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
+|...+..+.+++++..+ ++.... + ..+++.+.++|++-....+..-+++.|+...++....-.+..+.
T Consensus 73 -----drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~ 147 (524)
T PF05977_consen 73 -----DRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSIS 147 (524)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 344444444444333211 111111 2 45888899999999999999999999999999999888998888
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHH
Q 009176 475 IPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGT 523 (541)
Q Consensus 475 ~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~ 523 (541)
..++-.++|.++|.++..-+. ..+|.+.+...++.+
T Consensus 148 ~niar~iGPalgG~Lva~~G~-------------~~~f~inalsfl~~i 183 (524)
T PF05977_consen 148 FNIARIIGPALGGILVAFFGA-------------AAAFLINALSFLISI 183 (524)
T ss_pred HHHHHhccchHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 889989999999999987664 778888766555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0011 Score=71.39 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCCccccccchHHHHHHhCCChh--------hHHHHHHhhhhhccc-chhhhhhccccchHHHHHHH
Q 009176 10 WLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQL--------QLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIG 80 (541)
Q Consensus 10 w~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~--------~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliG 80 (541)
|..+++++.++......| .|.+..-++.|++++ +...+-....++..+ .++.|.+.||+++|.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred eeHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 345555555555443333 444544455676653 333333344444433 68899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHH-HhhhhHHHHHHHH
Q 009176 81 STLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITS-SYLGLSAKLYTSA 158 (541)
Q Consensus 81 a~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk-~~~GLSaaift~i 158 (541)
.+...+++...-.. ... ...+|++.+..++.|.+....+.+...-..+.+|+ .||++.|+.- ...++++++=..+
T Consensus 288 ~~~~~v~~~l~~~~-~~~--~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 288 LVAWALRFGFFAYG-DPE--YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHHHc-Ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 98888876555432 111 11245555556666766665555555555688997 6999999995 5677777776666
Q ss_pred HHHHh
Q 009176 159 VNAIE 163 (541)
Q Consensus 159 ~~~~~ 163 (541)
...++
T Consensus 365 ~G~l~ 369 (418)
T TIGR00889 365 SGVMV 369 (418)
T ss_pred HHHHH
Confidence 66555
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.003 Score=67.89 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=75.6
Q ss_pred CccccccchHHH-HHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH-HHHHHHHHHhhhcccc
Q 009176 25 TNSNFPAYSSQL-KQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL-IGYGLQYLFLTHTISH 101 (541)
Q Consensus 25 t~Y~f~~ys~~l-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~-~GY~~~~l~~~~~i~~ 101 (541)
..|....|.|.. ++.+|+|+.|...+.....++..+ .++.|.+.||+++|.++.++.+... .++.........
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---- 328 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA---- 328 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence 345566777874 566899999877777777676644 6788999999998888777655443 344322111121
Q ss_pred chHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhh-HHHHHHHHHHHH
Q 009176 102 LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGL-SAKLYTSAVNAI 162 (541)
Q Consensus 102 ~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GL-Saaift~i~~~~ 162 (541)
.+++.+.+...+.+.+....+........+.+|+ .||++.|+.-+.... .+++...+...+
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 1222221111111122222222222334577887 599999986554443 455555555443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0044 Score=68.18 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=117.7
Q ss_pred HHHhhhcCC--c-ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 009176 363 QIAESRGCS--G-TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTA 438 (541)
Q Consensus 363 ~i~~slg~~--~-~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~ 438 (541)
.+.+.+|.+ + .....+.+...-.+.-+.+|++.|.+ + +|+...... +.-.+..++..+..+ ..+.+.=+
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl---G---~K~vL~l~~-l~Wsl~t~L~~fa~Sl~~L~i~R~ 123 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL---R---YKPVLVLQA-LSFVCVWLLLLLGTSVWHMQLMEV 123 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh---C---chHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566775 3 45788888888889999999995543 1 566544333 233333334444433 45777778
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
+.|++-|..+ .+-.+++..|-.|+++.-.++...+..+|..+++.+++.+-. .+- +=|+.-.+|..+.
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s-~gW----------r~y~~Ln~Isl~s 191 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT-LGW----------ISYSTLNIISLVF 191 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc----------hhHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999888887432 221 2299999999999
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 009176 519 CLFGTFLALILYARTRKFY 537 (541)
Q Consensus 519 ~~~g~~lsl~l~~r~r~~Y 537 (541)
..++++++++|-...|..|
T Consensus 192 ~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 192 MTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHhCCCCchhhh
Confidence 9999999999987777654
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.003 Score=66.59 Aligned_cols=150 Identities=12% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhh-hhccc-chhhhhhccccchHHHHHHHHHHHHHH
Q 009176 10 WLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASD-AGKLF-GWISGVASVYLPLWLVLLIGSTLGLIG 87 (541)
Q Consensus 10 w~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~-~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~G 87 (541)
|..++.....+...+..|.| .++-+++ +|+|.++...+-.... ++.-+ .++.|.+.||++++.++.++.+....+
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~--~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGL--SKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55566666666666666665 3566766 6999999887655443 34445 578999999999998888777655343
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCC--CCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 88 YGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFP--FDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 88 Y~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP--~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
...+.........+..+.+.....+.+.......++.....++..+ ++||++.++.-+..++++.+-..+.-.++
T Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 288 -ALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred -HHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344443332211223333333333333333222222223334443 57899999999999999988888877666
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0066 Score=64.05 Aligned_cols=153 Identities=14% Similarity=0.035 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHH
Q 009176 341 WLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAP 417 (541)
Q Consensus 341 wllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~ 417 (541)
++.|+.+.++.|. ++--++.+.+++|.+ +....+++..+...++-...|.+ ||+. +|..........
T Consensus 10 ~~~~~~~~~~~~~---~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~-------~~~~~~~~~~~~ 79 (382)
T TIGR00902 10 ALGFFGYFCAYGI---FLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDAN-------HIIIALRLLALA 79 (382)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHH
Confidence 3444444444332 333466777888875 34556667676666666666655 5431 111111111111
Q ss_pred HHHH-HHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCC
Q 009176 418 MAGA-FMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGH 495 (541)
Q Consensus 418 ~~~~-~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~ 495 (541)
.++. .++....++ ..+++.-.+.|..++...++.-+++.|. .|+.+.+||.+.....+|..+++.+.|.+.|..+
T Consensus 80 ~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g- 156 (382)
T TIGR00902 80 SAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD- 156 (382)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 1111 112222333 3456666678888888888888887764 6888999999999999999999999999999765
Q ss_pred CCCCCccccccccHHHHHHHHHH
Q 009176 496 NAHNGKCMGMACYRSTFILWGSF 518 (541)
Q Consensus 496 ~~~~~~C~G~~CY~~tF~i~~~~ 518 (541)
++..|.+.+.+
T Consensus 157 ------------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 ------------EQNILAILTAG 167 (382)
T ss_pred ------------hhHHHHHHHHH
Confidence 57788877654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.032 Score=60.76 Aligned_cols=108 Identities=23% Similarity=0.135 Sum_probs=82.4
Q ss_pred chHHHHHHhCCChhhHHHHHHhhhhhcccchhhhhhccccc-----hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 32 YSSQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYLP-----LWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 32 ys~~lk~~l~~sq~~l~~l~~~~~~G~~~G~~~Gll~d~~p-----p~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
-.+-+|+++|+|.+|++.+..-.++.-.+-.+-|++.|.+| .+.-+++|++++.++...+-+ ..+.. .+.+.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~-~~~~~--~s~~~ 88 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL-LPASE--SSAAI 88 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh-ccccc--chhhh
Confidence 35679999999999999999999999999999999999998 666778899988766555333 33322 23345
Q ss_pred HHHHHHHhccccccccce---eeeeecccCCCCCceehh
Q 009176 107 IFLLTVLAGNSICWINTV---CYVVTIKNFPFDRQVAVG 142 (541)
Q Consensus 107 l~~~~~l~g~g~~~~nTa---~lvt~v~NFP~~RG~a~g 142 (541)
..++++++..|....|.+ -++-.+|.-|++||..++
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS 127 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQS 127 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHH
Confidence 566677777777777664 467777999999776543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0092 Score=65.89 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=106.6
Q ss_pred ecchHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccc----
Q 009176 358 LNNLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNV---- 431 (541)
Q Consensus 358 I~n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~---- 431 (541)
..++.++.+.+|.+. ......+-.+...+.-.+.|.++|-. |.|++..|++.+. .....+++++++++..+.
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~-~sr~GRRrp~il~-g~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRC-TSRFGRRRPFIAA-GAALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCC-CCCCCChHHHHHH-HHHHHHHHHHHHHhCchhhhhc
Confidence 346677778888753 44556666677777778889886643 3334444555433 233344444555443220
Q ss_pred -------------h-hHHHHHHHHHhhhccchhhHHHhhhhcCCCcc--cchhhhhhhhhhhhHHHHHHHHHHH--hhhc
Q 009176 432 -------------A-LYTSTAIIGVCSGAITSISVTTTTELFGTKNF--SVNHNIVVANIPIGSFLFGYLAALV--YHKE 493 (541)
Q Consensus 432 -------------~-l~~~s~liG~~yG~~~~l~P~ivse~FG~k~f--g~nyg~~~~a~~~Gs~l~~~laG~i--yD~~ 493 (541)
. ..++..+..++.....+-+.++++|++..++- +.-+++......+|+.+++.+.|.. ++..
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 1 12233345568888888889999999998854 5788888888899999998777754 3321
Q ss_pred CCCCCCCcc-ccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 494 GHNAHNGKC-MGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 494 ~~~~~~~~C-~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
.-. .+..| .-..=++..|++.+++.++.++++++..
T Consensus 182 ~~~-~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 182 PFT-KTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred ccc-cccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 110 11122 2222379999999888888777777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0057 Score=67.80 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=104.0
Q ss_pred cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHH-HHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccch
Q 009176 372 GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIG-ALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITS 449 (541)
Q Consensus 372 ~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~-~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~ 449 (541)
+-....+++.+.-.+|.+.+|++.|-. |-...+. ....-.+.+.+- ....+ ..+.+.=.+.|++=++.|+
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~-------~ls~~l~~~~~~w~~~~~~~-~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRF-------PLSKGLSVSGILWGLFGFLT-AAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhC-------ChHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhcccch
Confidence 345688888888889999999884422 3112221 111111111111 12334 3355556899999999999
Q ss_pred hhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 450 ISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 450 l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
..-.+++.+|+.++.|...|+.+.+..+|+.+++.++..++..++.. +...||..|+|.++++++..++.++.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~-------~~~gW~~~FiI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG-------GLAGWRWLFIIEGVITLVLGIVVFFF 226 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC-------CcCCceeehhHHHHHHHHHHheEEEE
Confidence 99999999999999999999999999999999999999988765552 44559999999999887777665543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0027 Score=67.90 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=112.3
Q ss_pred cchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhh
Q 009176 374 SSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSIS 451 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~ 451 (541)
.++.+..++.+.+---+.|.+ |++ ++..-+.+-+.+|..+-+++++..+ ..+.++=.+=|++..+.+..-
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~i--------Gy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRI--------GYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHh--------ccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 345555566666655555555 543 4555566677777777778877766 568888899999999999999
Q ss_pred HHHhhhhcCCCcc-cchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 452 VTTTTELFGTKNF-SVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 452 P~ivse~FG~k~f-g~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
-++.+|.|+.+|= |.--|+.....++|-+++|++.|.+||.-+ |+..|+|++.++++..++.+.+.
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------------k~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------------KSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-------------CcCcHHHHHHHHHHHHHHHHhee
Confidence 9999999999996 888899888899999999999999999876 59999999999999999988886
Q ss_pred hhhh
Q 009176 531 ARTR 534 (541)
Q Consensus 531 ~r~r 534 (541)
..+|
T Consensus 248 ~p~~ 251 (464)
T KOG3764|consen 248 EPTE 251 (464)
T ss_pred Cccc
Confidence 6554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=63.97 Aligned_cols=142 Identities=15% Similarity=0.036 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~ 415 (541)
.|++++++++.-...-.+...-+.++.++++.+ +....++...+...++-+..|.+ |++ +|...+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~--------G~r~~l~~g~ 98 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL--------SYKAGIITGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CcHHHHHHHH
Confidence 466666655443322222223455666677875 45567777888888888887777 443 5555555566
Q ss_pred HHHHHHHHHH---hhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccc-hhhhhhhhhhhhHHHHHHHHHHH
Q 009176 416 APMAGAFMLL---LNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSV-NHNIVVANIPIGSFLFGYLAALV 489 (541)
Q Consensus 416 ~~~~~~~ll~---~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~-nyg~~~~a~~~Gs~l~~~laG~i 489 (541)
++++++.++. ....+ ..+.+.-.+.|++.|..+....+++.|. ..++-+. .-++....+.+|..+++.+.+.+
T Consensus 99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665543 22333 3466677899999999999999999986 5555553 56777788888888887666554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.008 Score=66.27 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=103.1
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHH
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVT 453 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ 453 (541)
+..++.-+...+|=++.|.++|.+ +|...+...++++.++.++.++..+ ..+.+.=.+.|++.++.+.+...
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~-------GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRF-------GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhc-------ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 445555566667888888886643 7888887777777777777777777 45777779999999999999999
Q ss_pred HhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 454 TTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 454 ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
+++|+++.|+=+..=.+ ...+-.++++++.+++++.. + +|..+++....+++.+++
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~------------Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---D------------WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---h------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999888887 66777778888888888876 3 999999999888877776
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=63.50 Aligned_cols=148 Identities=18% Similarity=0.086 Sum_probs=114.8
Q ss_pred HHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 009176 362 GQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTA 438 (541)
Q Consensus 362 g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~ 438 (541)
..|.++.|++ +..+.-|.++|.=.+++...|.++|-. . ||.. +...+++.++..+++-+..+ ..+.+.-.
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~---n---pr~f-m~~gLilsai~nil~Gfs~s~~~~~~l~~ 125 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS---N---PRYF-MAFGLILSAIVNILFGFSPSLFLFAVLWV 125 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC---C---Ccee-ehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455566675 556799999999999999999996632 1 5544 34455556666666555444 34556667
Q ss_pred HHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHH--HHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLA--ALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~la--G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
+-|+.=|..|+-.-.++..+|..|.=|+-|++-.++.-+|+-+-+.++ |++-++. + .|.+|++-+
T Consensus 126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~------------w~~~f~~pg 192 (448)
T COG2271 126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-G------------WRAAFYFPG 192 (448)
T ss_pred HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-c------------hhHHHHHHH
Confidence 889999999999999999999999999999999999999999998888 8887766 3 799999999
Q ss_pred HHHHHHHHHHHHH
Q 009176 517 SFCLFGTFLALIL 529 (541)
Q Consensus 517 ~~~~~g~~lsl~l 529 (541)
+++++-.++.+.+
T Consensus 193 iiaiival~~~~~ 205 (448)
T COG2271 193 IIAIIVALILLFL 205 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 8876665555554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.023 Score=61.09 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhccc---------chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhh
Q 009176 406 PSPASIGALMAPMAGAFMLLLNETN---------VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIP 476 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~~~ll~~~~~~---------~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~ 476 (541)
+|...+....+++.++.++.+...+ ..+.+.=.+.|++.|+.++...++++|.+-.|+-|...++...+..
T Consensus 91 Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~ 170 (432)
T PRK10406 91 GRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLI 170 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHH
Confidence 6777777777777776666554332 1366677899999999999999999999999998887777766666
Q ss_pred hhHHHHHHHHHHHh----hh---cCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 477 IGSFLFGYLAALVY----HK---EGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 477 ~Gs~l~~~laG~iy----D~---~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
.|..+.+.+...+. |. +-. +|..|++.+..+++.
T Consensus 171 ~G~~~~~~~~~~~~~~~~~~~~~~~g------------Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 171 GGQLLALLVVVVLQQTLEDAELREWG------------WRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccc------------hHHHHHHHHHHHHHH
Confidence 66555544333222 21 122 899999877665544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.021 Score=65.41 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=98.7
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc-c--------chhHHHHHHHHHhhh
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET-N--------VALYTSTAIIGVCSG 445 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~-~--------~~l~~~s~liG~~yG 445 (541)
..+..+.-+..+--+++|++.|- +++|.+++....++..+++.+++... + ..++++-+++.++-|
T Consensus 27 ~i~~~f~~l~yl~pilGg~iAD~------~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~G 100 (654)
T TIGR00926 27 VLFHTFTYLCYLTPLIGAIIADG------WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTG 100 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcc
Confidence 34444444444444556666331 34777877777777777776665421 1 136677889999999
Q ss_pred ccchhhHHHhhhhcCCC---cccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCcccc-ccccHHHHHHHHHHHHH
Q 009176 446 AITSISVTTTTELFGTK---NFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMG-MACYRSTFILWGSFCLF 521 (541)
Q Consensus 446 ~~~~l~P~ivse~FG~k---~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G-~~CY~~tF~i~~~~~~~ 521 (541)
+.=+.+.+..+|.|..+ .+-.-|++-+.+..+|+++.+.+.+++-+. ..|.| ..||..+|.+.+++.++
T Consensus 101 giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~-------~~~fg~~~~~~~aF~i~~i~m~i 173 (654)
T TIGR00926 101 GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD-------VGCFGCQDCYPLAFGVPAILMIL 173 (654)
T ss_pred ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccccCcchHHHHHHHHHHHHH
Confidence 99999999999999854 377788888889999999998888877532 13555 46899999999888777
Q ss_pred HHHHHH
Q 009176 522 GTFLAL 527 (541)
Q Consensus 522 g~~lsl 527 (541)
+.++-+
T Consensus 174 a~lvf~ 179 (654)
T TIGR00926 174 ALIVFM 179 (654)
T ss_pred HHHHHH
Confidence 765543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=64.04 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=101.3
Q ss_pred cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhH
Q 009176 374 SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISV 452 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P 452 (541)
+.++|..++.+..|.+.+|.++|.. +|..++.+..++..++-++.+...+ ..+.++-++.|+++|+.-.+.|
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~-------GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRI-------GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcch
Confidence 6899999999999999999997754 7888777777777777777766666 5688899999999999999999
Q ss_pred HHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhc-CCCCCCCccccccccHHHHHHHHHHHHHHHHH
Q 009176 453 TTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKE-GHNAHNGKCMGMACYRSTFILWGSFCLFGTFL 525 (541)
Q Consensus 453 ~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~-~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~l 525 (541)
..++|+=..+.=|..=.+..+...+|-.++ .+.|+..+.. .. ||..+.+....+++-.+.
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~------------Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAG------------WRIPLGLALIPAVILALG 225 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCcc------------HHHHHHHHHHHHHHHHHH
Confidence 999999766666666666666666555554 5555555433 12 887777777777666666
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.038 Score=57.06 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHH--HhhhcCCc--ccchhhhhhhcccccccccccc-hhhhcccCCCCChh-HHH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQI--AESRGCSG--TSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSP-ASI 411 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i--~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~-~~l 411 (541)
+.||+++++-.+-.-+=.-.| -+||+ .+..|.+. +...-|++-.-+..---..|.+ |++ +|. ||.
T Consensus 264 ppfw~~~iicv~yyva~fPFi-~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~--------G~n~~wv 334 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFI-TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY--------GFNLWWV 334 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh--------cceehhH
Confidence 569999887665421111111 23333 24467653 2222332222222222223444 544 333 455
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhc----cchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHH
Q 009176 412 GALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGA----ITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAA 487 (541)
Q Consensus 412 ~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~----~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG 487 (541)
+...+...++|..+.++. ..=|++..+.|++|-. .|+..|.++.| +..||.||+++.-.-+|--+-+.++|
T Consensus 335 ~~a~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAcslWP~va~~vpE----~qLGTaygf~qsIqNLgla~i~Iiag 409 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLACSLWPCVASLVPE----EQLGTAYGFIQSIQNLGLAFIPIIAG 409 (459)
T ss_pred HHHHHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH----HHhcchHHHHHHHHhhhhhHHhhhhh
Confidence 555566667776665532 2256788889999875 67778888877 48899999999888888777799999
Q ss_pred HHhhhcCC
Q 009176 488 LVYHKEGH 495 (541)
Q Consensus 488 ~iyD~~~~ 495 (541)
.|-|..++
T Consensus 410 ~i~d~~g~ 417 (459)
T KOG4686|consen 410 FIADGDGS 417 (459)
T ss_pred eeecCCCc
Confidence 99998876
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=60.72 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=82.2
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHH
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTT 454 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~i 454 (541)
..=|.+++..++--..+|-.||.. +|.-.+.++.+..++..++.+...+...++.+=.+|-++=+..++.-++
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~y-------GRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAi 144 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRY-------GRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAI 144 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhh-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence 355677777777777777776542 5666565565555666666665555434444445555666689999999
Q ss_pred hhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh
Q 009176 455 TTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH 491 (541)
Q Consensus 455 vse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD 491 (541)
++|.+-.||-+.-.+.+.+++++|-+++|.+.|++-.
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999999999998866
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.04 Score=58.58 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=91.9
Q ss_pred hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-------chhHHHH
Q 009176 367 SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-------VALYTST 437 (541)
Q Consensus 367 slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-------~~l~~~s 437 (541)
.+|.+ ......++..++..+.....|.++|-. ++|++-.||+.+.. ..+++++.+++....+ ..+.+..
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-~~r~Grrr~~i~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRT-RTRWGKFRPWLLIG-AIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecC-CCCCCCcchhHHHh-HHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 45554 345678888899999999999985543 23333345665543 3334444444433221 1233445
Q ss_pred HHHHHhhhccchhhHHHhhhhcC-CCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 438 AIIGVCSGAITSISVTTTTELFG-TKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 438 ~liG~~yG~~~~l~P~ivse~FG-~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
.+.+.+++....-+-+..+|+.. .|.-+...++-.....+|+.+.+.+.+.+...-+.. + ...-|+..|.+.+
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~-~-----~~~g~~~~~~i~~ 180 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG-D-----DKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-c-----ccccHHHHHHHHH
Confidence 66777887765555677777763 466666777777777777777666666665432210 0 0112888888888
Q ss_pred HHHHHHHHHHHHH
Q 009176 517 SFCLFGTFLALIL 529 (541)
Q Consensus 517 ~~~~~g~~lsl~l 529 (541)
+++++..++....
T Consensus 181 ~l~~~~~~~~~~~ 193 (437)
T TIGR00792 181 LIGVVSLIICFFG 193 (437)
T ss_pred HHHHHHHHHHHcC
Confidence 8777666555433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.0029 Score=68.65 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=99.0
Q ss_pred chhhhhhhcccccccccccc-hhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccch-hHHHHHHHHHhhhccchhhH
Q 009176 375 SLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVA-LYTSTAIIGVCSGAITSISV 452 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~-l~~~s~liG~~yG~~~~l~P 452 (541)
++-..+.+.-.+.-.+.|++ |++ .|++.++....+-.++.++..+....+ +.+.=.++|+.-...-++.|
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadry--------NR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~ 143 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRY--------NRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAP 143 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhc--------CcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccch
Confidence 33344444444444556777 433 677776665555555555554443322 44456799999999999999
Q ss_pred HHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 453 TTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 453 ~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
++++|.|--.+=|.-+++.+++.|+|+.++-.+.+++-+.+.. +|.+|.+.+++.++..++.++..
T Consensus 144 s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~------------Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 144 SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW------------WRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc------------eEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998886566666666555 89999999999887777776664
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.31 Score=53.47 Aligned_cols=177 Identities=14% Similarity=0.043 Sum_probs=106.3
Q ss_pred hchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHH
Q 009176 336 QRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIG 412 (541)
Q Consensus 336 ~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~ 412 (541)
.+....++...| +..|..-+....+..+-+ .+|.+. ....+++..+--.+ +.++|.++|.... ++..|.+.+.
T Consensus 24 ~~~~~~~~~~~y-~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i--~G~rRr~~l~ 99 (468)
T TIGR00788 24 PRVVLAIGLQVL-FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL--FGYTKRWYLV 99 (468)
T ss_pred cchHHHHHHHHH-HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC--CCccchHHHH
Confidence 344455555555 344554333334455555 578864 33566776665555 5568888554421 1334666655
Q ss_pred HHHHHH-HHHHHHHhhccc-chhHH-HHHHHHHhhhccchhhHHHhhhhcCCCcccc---hhhhhhhhhhhhHHHHHHHH
Q 009176 413 ALMAPM-AGAFMLLLNETN-VALYT-STAIIGVCSGAITSISVTTTTELFGTKNFSV---NHNIVVANIPIGSFLFGYLA 486 (541)
Q Consensus 413 ~~~~~~-~~~~ll~~~~~~-~~l~~-~s~liG~~yG~~~~l~P~ivse~FG~k~fg~---nyg~~~~a~~~Gs~l~~~la 486 (541)
+..++. +.+...++...+ ..+++ ...+++++.+.+-...=+++.|..- +.-+. +.........+|..+++.++
T Consensus 100 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~ 178 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLG 178 (468)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHH
Confidence 554444 233333332222 22333 5568899999888889999999987 44332 33344444457888888999
Q ss_pred HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 487 ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 487 G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
|.+.|..+ .+..|++.+.+.++..+..+++.
T Consensus 179 G~l~~~~~-------------~~~~f~~~a~l~ll~~~~~~~~~ 209 (468)
T TIGR00788 179 GPLLDKTL-------------TRILFLITAALLLLQLFVSNLSK 209 (468)
T ss_pred HHHHHhcC-------------cchHHHHHHHHHHHHHHHHHhcc
Confidence 99998765 58899999888877755444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.4 Score=53.52 Aligned_cols=170 Identities=21% Similarity=0.237 Sum_probs=114.5
Q ss_pred hhhchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccc-cccccccchhhhcccCCCCChhHH
Q 009176 334 MLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFF-GRLIPSLFGYFFSRSKHMIPSPAS 410 (541)
Q Consensus 334 ~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~-GRl~~G~~s~~~~~~~~~~~R~~~ 410 (541)
...=.-|+...+++.+-...|+- ...+.|.++.+ +.+...|+.+-+..+ |=+.+...+++. .|...
T Consensus 46 vV~~a~fl~~~~~~g~~~~~Gv~----~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg-------~R~v~ 114 (509)
T KOG2504|consen 46 VVVFASFLVNLSTDGLINSFGLL----FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFG-------CRTVM 114 (509)
T ss_pred eeeHhHHHHHHhhhcchheehhh----HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcC-------chHHH
Confidence 34445577777777777777622 12334555543 234455554433333 433333334432 46665
Q ss_pred HHHHHHHHHHHHHHHhhcccc-hhHH-HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 411 IGALMAPMAGAFMLLLNETNV-ALYT-STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~~~~-~l~~-~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
++.. ++..+++++.++..+. .+++ ..++.|+++|..+.-...++..+| .|+=+.-=|+...+.++|.++++++--+
T Consensus 115 i~G~-~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 115 IAGG-LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence 5543 4566777777777763 3454 567889999999999999999766 5666788899999999999999999999
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+.|..+ +|.++++.+.+++-.++..+.+
T Consensus 193 l~~~~G-------------~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 193 LLSKYG-------------WRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred HHHHhC-------------cHHHHHHHHHHHHHHHHHHHHc
Confidence 999887 5999999999885555555544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.54 Score=51.63 Aligned_cols=177 Identities=20% Similarity=0.192 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhcccce-------eecchHHHHhhhcCC-c---------ccchhhh-hhhcccccccccccchhhhcccC
Q 009176 341 WLYFFVYFSGATLGLV-------FLNNLGQIAESRGCS-G---------TSSLVSL-SSSFGFFGRLIPSLFGYFFSRSK 402 (541)
Q Consensus 341 wllf~~~~~g~g~Glm-------~I~n~g~i~~slg~~-~---------~~~~Vsl-~Si~N~~GRl~~G~~s~~~~~~~ 402 (541)
|.+|..+.+ +|.|++ .||-+-+|-.-+.+. + ....|.. -.+.|.+|.++.|++.|++
T Consensus 37 w~~fk~i~i-AG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~---- 111 (538)
T KOG0252|consen 37 WKHFKAIII-AGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF---- 111 (538)
T ss_pred HHHHHHHHH-hhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 566665544 578877 345555554444221 1 1223333 3455788999999996654
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhhcc----c----chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhh
Q 009176 403 HMIPSPASIGALMAPMAGAFMLLLNET----N----VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVAN 474 (541)
Q Consensus 403 ~~~~R~~~l~~~~~~~~~~~ll~~~~~----~----~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a 474 (541)
+|...+-..+++|.++-++...+. + .+|...=.++|+.-|+=+++..+++||.=-.|.=|+.-+.++..
T Consensus 112 ---GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~ 188 (538)
T KOG0252|consen 112 ---GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAM 188 (538)
T ss_pred ---cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEe
Confidence 666777667777777755544332 2 13444456999999999999999999999999988888888777
Q ss_pred hhhhHHHHHH---HHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 009176 475 IPIGSFLFGY---LAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL-ILYART 533 (541)
Q Consensus 475 ~~~Gs~l~~~---laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl-~l~~r~ 533 (541)
.+.|-..+.. +.-.++++ .|.+..||+..=.++=....+|++-++ ++++|-
T Consensus 189 Qg~GilaG~ivt~Iv~~~fe~--------~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl 243 (538)
T KOG0252|consen 189 QGFGILAGGIVALIVSAIFEK--------IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL 243 (538)
T ss_pred cchhHhhccHHHHHHHHHHhc--------cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7766555532 22333433 244557787777777666666666544 334443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.22 Score=54.99 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhccc---chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHh
Q 009176 414 LMAPMAGAFMLLLNETN---VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVY 490 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~---~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iy 490 (541)
..++.+++-++.+...+ ..+.+.=.+-|+++|..|+.+..+++.++-++.-++-.++++.+..+|..+.-+++|.+=
T Consensus 109 ~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc 188 (466)
T KOG2532|consen 109 SGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLC 188 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 33444455455443332 234556689999999999999999999999999999999999999999999988999998
Q ss_pred hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 491 HKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 491 D~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
+..-. .+..|++.++++++=.++-+++
T Consensus 189 ~s~~G------------W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 189 ESSLG------------WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred ccCCC------------CchHHHHHHHHHHHHHHHHHHH
Confidence 87555 8999999999877666554444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.37 Score=50.86 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhh---ccc-------chhHHHHHHHHHhhhccchhhHHHhhhhcCCCc---ccchhhhhhhhhh
Q 009176 410 SIGALMAPMAGAFMLLLN---ETN-------VALYTSTAIIGVCSGAITSISVTTTTELFGTKN---FSVNHNIVVANIP 476 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~~---~~~-------~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~---fg~nyg~~~~a~~ 476 (541)
++.+..++++++++++.. +.. ..++++-.+++++.|+.=+..+++.+|.|-.++ ...-|+..+.+.-
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 344555667777766322 111 258999999999999999999999999998763 4556677788888
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 009176 477 IGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRKFYSQ 539 (541)
Q Consensus 477 ~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~~Y~~ 539 (541)
+|+++...+.+++-|+.+ |...|.+.++..+++.+ ...-.||.|+.
T Consensus 83 ~G~~~~~~~~~~i~~~~~-------------~~~~f~i~~~~~~~~~~----~f~~~~~~y~~ 128 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYG-------------WFLGFGIPAIGMLLALI----VFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHCCCHHHHCS--------------HHHHHHHHHHHHHHHHH----HHHCCCCTT--
T ss_pred hhhHhhcccchhhccccc-------------hhhhhhHHHHHHHHHHH----HHHhCCcCCcC
Confidence 999998888888875433 89999888776665554 33334444543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=93.34 E-value=9.8 Score=41.27 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=99.8
Q ss_pred CHHhhhhchhHHHHHHHHHHhhcccceeec-chHHH-HhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCC
Q 009176 330 GAMLMLQRVDFWLYFFVYFSGATLGLVFLN-NLGQI-AESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMI 405 (541)
Q Consensus 330 t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~-n~g~i-~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~ 405 (541)
.+++...+++--..|+..+++.-+ +-.-+ -+-+. +|-+|++ +++-+-++.+..-.+|-+..|+. +.|+. +.
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a-~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~---l~~~~-~~ 274 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLA-FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFL---LSRRL-GK 274 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHH-HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC-Cc
Confidence 346666677666666555544211 10000 00000 2334553 44445555665555666665554 11111 22
Q ss_pred ChhHHHHHHHHHHHHHHHHHh-hccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 406 PSPASIGALMAPMAGAFMLLL-NETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~~~ll~~-~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
.|...+-+.....+...+.++ ...+ ..+..+..++|++.|..-.-.-+..-|+=...+-|+-=|.--.+.+++--++.
T Consensus 275 ~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~ 354 (403)
T PF03209_consen 275 KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGT 354 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 233222222222222222222 2223 45778889999999987666667777777778888776776666666666667
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALIL 529 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l 529 (541)
.+.|-+.|--..-.+. .=..-|...|.+=+.+.++++++..-+
T Consensus 355 ~~GG~~~D~~~~~~~~---~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 355 FLGGALRDLVRALFGN---SPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHHhccC---CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777753211000 001127777877766665555444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.065 Score=57.82 Aligned_cols=154 Identities=12% Similarity=0.009 Sum_probs=91.0
Q ss_pred HHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhc
Q 009176 37 KQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAG 115 (541)
Q Consensus 37 k~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g 115 (541)
++.+|.+..+...+.....++.-+ .++.|.+.||++++.++.+|.+...+|+..++.. +..++|.+.+.+++.|
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-----SVWSLPVALVALAIAS 330 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----CchhHHHHHHHHHHHH
Confidence 556777665544444443455543 6788999999999999999999999999887742 1234676666677777
Q ss_pred cccccccceeeeeecccCC--------CCCceehhhHHHhhhh----HHHHHHHHHHHH-hcCCCCCcccc----hhhhh
Q 009176 116 NSICWINTVCYVVTIKNFP--------FDRQVAVGITSSYLGL----SAKLYTSAVNAI-ETSSPNKRAKL----YLLFN 178 (541)
Q Consensus 116 ~g~~~~nTa~lvt~v~NFP--------~~RG~a~gllk~~~GL----Saaift~i~~~~-~~~~~~~d~~~----fLlll 178 (541)
.|....++.........=| +.+|...|+.--..-+ ++++.+.+.... |..+ ..++++ +-...
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~-~~~~~~~~~~i~~~~ 409 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIAN-QVQTPEVIMGIRTSI 409 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcCCHHHHHHHHHHH
Confidence 7776655443322222222 1347776664444334 444444444332 2111 112323 44555
Q ss_pred chhhhHhHhhccceeeee
Q 009176 179 SIFPLLACVVTSPVVREI 196 (541)
Q Consensus 179 a~~p~~v~l~~~~~ir~~ 196 (541)
.++|.+..++...+.+-+
T Consensus 410 ~~~p~~~~~~~~~~~~~y 427 (448)
T PRK09848 410 ALVPCGFMLLAFVIIWFY 427 (448)
T ss_pred HHHHHHHHHHHHHHHHHe
Confidence 678888777776666655
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.25 Score=53.34 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhcc-cchhhhhhccccchHHHHHHHHHHHHHHH
Q 009176 10 WLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKL-FGWISGVASVYLPLWLVLLIGSTLGLIGY 88 (541)
Q Consensus 10 w~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~-~G~~~Gll~d~~pp~~vlliGa~~~~~GY 88 (541)
++-++++..++...+..|.|. +.-+++.-+++.+....+-..+-+.+. +=..++.+..|++++.++++|.+. |
T Consensus 210 ~~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~----~ 283 (400)
T PF03825_consen 210 LVFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVA----Y 283 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----H
Confidence 345567778888899888886 344776665665554432222223332 246789999999999999987765 5
Q ss_pred HHHHHHhhhccccchHHHHHH-HHHHhcccccc--ccceeeeeecccCCC-CCceehhhHHHh-hhhHHHHHHHHHHHHh
Q 009176 89 GLQYLFLTHTISHLSYAHIFL-LTVLAGNSICW--INTVCYVVTIKNFPF-DRQVAVGITSSY-LGLSAKLYTSAVNAIE 163 (541)
Q Consensus 89 ~~~~l~~~~~i~~~~~w~l~~-~~~l~g~g~~~--~nTa~lvt~v~NFP~-~RG~a~gllk~~-~GLSaaift~i~~~~~ 163 (541)
..=|..+.--..+ +++..++ .+-..-+|-|| +.++++.---++.|+ .|+++.|+.-+. .|+++++=+.+.-.++
T Consensus 284 ~vR~~l~a~~~~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~ 362 (400)
T PF03825_consen 284 AVRWLLYAYFSDP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLY 362 (400)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555554442111 1222222 11123344443 345555555589997 589999998874 7999999998887776
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.98 E-value=4.8 Score=44.48 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=82.6
Q ss_pred ccchhhhhhhcccccccccc-cchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhh
Q 009176 373 TSSLVSLSSSFGFFGRLIPS-LFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSIS 451 (541)
Q Consensus 373 ~~~~Vsl~Si~N~~GRl~~G-~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~ 451 (541)
.+.+.++.++-+..+-++.. .+.+.+ +..| .+...+....+..+..++....+.......+..--+.....+
T Consensus 279 ~s~~~~~~~~~~~i~~l~~~~~l~~~l-----~~~~--~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~ 351 (463)
T KOG2816|consen 279 FSDLLSLVSILGIISQLLLLPLLSSIL-----GEKR--LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAI 351 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh--HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHH
Confidence 45577777777777777744 555443 2223 344444555566667777766554344444444455677888
Q ss_pred HHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCC
Q 009176 452 VTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHN 496 (541)
Q Consensus 452 P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~ 496 (541)
=++++.+=+.+..|.+++++...-.+.+.+.+.+.+.+|-.+.+.
T Consensus 352 ~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~ 396 (463)
T KOG2816|consen 352 RAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDD 396 (463)
T ss_pred HhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999776653
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.57 Score=50.53 Aligned_cols=150 Identities=10% Similarity=0.041 Sum_probs=80.9
Q ss_pred hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc----c---chhHHHHH
Q 009176 368 RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET----N---VALYTSTA 438 (541)
Q Consensus 368 lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~----~---~~l~~~s~ 438 (541)
+|.+ ......++..++..+.-.+.|+++|.. +.|++-.|||.+... ++++++..++.... . ..+++...
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~-~~r~Grrrp~il~~~-~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRT-RTRHGQFRPYLLWFA-IPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecC-CCCCCCcchhHHHHH-HHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 4544 345677778888889888988886544 344455678765432 23333333222221 1 12333445
Q ss_pred HHHHhhhccchhhHHHhhhhcCC-Ccccch----hhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHH
Q 009176 439 IIGVCSGAITSISVTTTTELFGT-KNFSVN----HNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFI 513 (541)
Q Consensus 439 liG~~yG~~~~l~P~ivse~FG~-k~fg~n----yg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~ 513 (541)
+.+.+|.....-+-++.+|+.-. |.-+.. ......+..+++.+..++...+-+.+ . ...|+.++.
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~-~---------~~g~~~~~~ 187 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGD-E---------QKGYFYAMM 187 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-h---------hhhHHHHHH
Confidence 66777776665666777777632 333333 33334444444444433333321110 0 123888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 009176 514 LWGSFCLFGTFLALIL 529 (541)
Q Consensus 514 i~~~~~~~g~~lsl~l 529 (541)
+.+.++++..+++++.
T Consensus 188 i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 188 VMGLLGVVLFFCCFFM 203 (444)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888777766655543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.31 Score=45.84 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhcccceeecchHH-----HHhhhcCCcccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 339 DFWLYFFVYFSGATLGLVFLNNLGQ-----IAESRGCSGTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 339 ~Fwllf~~~~~g~g~Glm~I~n~g~-----i~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
-|-.+|..|--.......++.++.. |-+..|+...++.-...++++++. ..+++++ +..|.+++
T Consensus 4 ~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~---P~iv~~l--------g~K~sm~l 72 (156)
T PF05978_consen 4 GFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFA---PSIVNKL--------GPKWSMIL 72 (156)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhH---HHHHHHH--------hhHHHHHH
Confidence 4666676665555444444433222 112234334445555566666542 3333443 34455554
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHh
Q 009176 414 LMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVY 490 (541)
Q Consensus 414 ~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iy 490 (541)
..+..++-......+....++.++++.|++.+..|.---..+.+.-=.++.+.|.|+...-...+.++++.+.-.++
T Consensus 73 g~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 73 GSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333321222223334568999999999999999999999988887777787777655555555555554433333
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.8 Score=46.32 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHH-HhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQ-SINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~-~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
++|..+..+..++ ++.+..-.+..| -.+..+|.+ .+...+.....++..+ .++.+.+.||++++-+..+|.+...
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 4455555555543 444433333333 455666666 4556666677777755 6888999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccc--eeeeeecc------cCCCCCceehhh----HHHhhhhHHH
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINT--VCYVVTIK------NFPFDRQVAVGI----TSSYLGLSAK 153 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nT--a~lvt~v~------NFP~~RG~a~gl----lk~~~GLSaa 153 (541)
+++...|..-.+ +.|.+.+...+.|.+.+..++ -++.+-+- +-.+..|...|+ .|-..|++++
T Consensus 302 ~~~~~~~~~~~~-----~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~ 376 (428)
T PF13347_consen 302 LGFLLLFFLGPG-----SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA 376 (428)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999988877652 347777777777776664442 23333332 222334555443 4666778888
Q ss_pred HHHHHHHHH-hcCCC---CCc-ccchhhhhchhhhHhHhhccceeeee
Q 009176 154 LYTSAVNAI-ETSSP---NKR-AKLYLLFNSIFPLLACVVTSPVVREI 196 (541)
Q Consensus 154 ift~i~~~~-~~~~~---~~d-~~~fLllla~~p~~v~l~~~~~ir~~ 196 (541)
+...+-+.. |.++. +++ ....-.+..++|.+..++.+.+.+-+
T Consensus 377 i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y 424 (428)
T PF13347_consen 377 IVGLLLALVGYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFY 424 (428)
T ss_pred HHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777666553 21010 001 22355566678888888887777666
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.49 Score=48.93 Aligned_cols=127 Identities=9% Similarity=0.034 Sum_probs=84.8
Q ss_pred ccccchHHHH-H--HhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 009176 28 NFPAYSSQLK-Q--LLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLS 103 (541)
Q Consensus 28 ~f~~ys~~lk-~--~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~ 103 (541)
..+.|.+..- + .+|+|.++....-...-.+..+ .+..+.+.||++++..+.++.+...++..+.+.. .+ ...
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-~~---~~~ 233 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-HG---YVA 233 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CC---HHH
Confidence 3344444433 2 3699988888774444455545 7899999999999888999999888887555532 21 112
Q ss_pred HHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 104 YAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 104 ~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.| ..++.|.+.+...-..+....+.+|++.|++.+++ ..-.+.+++...+.-.+.
T Consensus 234 ~~----~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 234 MW----FVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 23 22244555555555566677799999989998886 555577777777666554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.76 E-value=22 Score=39.37 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhcc--cc-hhHHHHHHHHHhhhccchhhHHHhhhh-------cCCCcccchhhhhhhhh
Q 009176 406 PSPASIGALMAPMAGAFMLLLNET--NV-ALYTSTAIIGVCSGAITSISVTTTTEL-------FGTKNFSVNHNIVVANI 475 (541)
Q Consensus 406 ~R~~~l~~~~~~~~~~~ll~~~~~--~~-~l~~~s~liG~~yG~~~~l~P~ivse~-------FG~k~fg~nyg~~~~a~ 475 (541)
++...+....++.+++.+++.+.. +. .+++..++.++.+|...++..+.++|. =|.|.=|..|+.+...-
T Consensus 300 gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~ 379 (467)
T COG2211 300 GKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFR 379 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHH
Confidence 555555555565666655444333 23 455566888899999888888888875 38888899999999777
Q ss_pred hhhHHHHHHHHHHHhhhc
Q 009176 476 PIGSFLFGYLAALVYHKE 493 (541)
Q Consensus 476 ~~Gs~l~~~laG~iyD~~ 493 (541)
=+|.-+++.+.|++-+.-
T Consensus 380 K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 380 KLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 777777766666665543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.01 Score=63.52 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=90.7
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc---c-chhHHHHHHHHHhhhccchh
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET---N-VALYTSTAIIGVCSGAITSI 450 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~---~-~~l~~~s~liG~~yG~~~~l 450 (541)
...+...+...+|-+++|.+.|. ++|...+.....++.++.++..... + ..+.++-.+.|++.|+...+
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~-------~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADR-------YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHhhhccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34555566666777777776442 2666666666666666666655554 4 45777779999999999999
Q ss_pred hHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh--hcCCCCCCCccccccccHHHHHHHHHHHHHHHHHH
Q 009176 451 SVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH--KEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLA 526 (541)
Q Consensus 451 ~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD--~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~ls 526 (541)
.|..+.|.=..|+=+..-.+..+++.+|..+...+.-.+.+ .+.. +|..+.+.+..+++..+..
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~------------Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWG------------WRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc------------ccccccccccccccccccc
Confidence 99999999999999999999999888887766433211111 1112 6667766666665544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.23 Score=54.36 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=83.9
Q ss_pred chHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 009176 32 YSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLL 110 (541)
Q Consensus 32 ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~ 110 (541)
=-+++++-+|++-+..-.|.+..+++--+ +++.|++.||+-+.-++.+|...-...=+..-.. -.+||+.++
T Consensus 55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-------~~Fwq~~l~ 127 (493)
T KOG1330|consen 55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-------NHFWQVLLC 127 (493)
T ss_pred hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 45688999999999999999999999844 9999999999998888888876554433332211 358999999
Q ss_pred HHHhccccccccceeeeeecccCCC-CCceehhh
Q 009176 111 TVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGI 143 (541)
Q Consensus 111 ~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gl 143 (541)
=.+.|.|..-.++.+----.-+||+ +|+++.|+
T Consensus 128 R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i 161 (493)
T KOG1330|consen 128 RGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI 161 (493)
T ss_pred HHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence 8899999987777776666699998 69887764
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.24 Score=54.47 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHhcCCccccccchHHHHHHhCCC--hhhHHHH-HHhhhhhccc-chhhhhhccc---cchHHHHHHHH
Q 009176 9 QWLSLVGAIWLQSINGTNSNFPAYSSQLKQLLSLS--QLQLNNL-AFASDAGKLF-GWISGVASVY---LPLWLVLLIGS 81 (541)
Q Consensus 9 rw~~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~s--q~~l~~l-~~~~~~G~~~-G~~~Gll~d~---~pp~~vlliGa 81 (541)
+++.+.+=+.+-...=+.|-.++|-..++-..+.+ -..+..+ ++.--+|..+ |++.+.+.+| +|.+...++|.
T Consensus 240 ~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~ 319 (461)
T KOG3098|consen 240 PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGI 319 (461)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHH
Confidence 33443333333444445666778888777653333 3333333 2333456654 7788888654 67899999999
Q ss_pred HHHHHHHHHHHHHhhhcccc-----------chHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhh
Q 009176 82 TLGLIGYGLQYLFLTHTISH-----------LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGL 150 (541)
Q Consensus 82 ~~~~~GY~~~~l~~~~~i~~-----------~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GL 150 (541)
+....++.++.+.+....|- +.+-+..++-++.|.+.+-.||..++.+-.-+|+.|-.+-.+.|-|.++
T Consensus 320 ~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~ 399 (461)
T KOG3098|consen 320 IIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSV 399 (461)
T ss_pred HHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999988765420 1244556667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccchhhhhchhhhHhHhhccceeeee
Q 009176 151 SAKLYTSAVNAIETSSPNKRAKLYLLFNSIFPLLACVVTSPVVREI 196 (541)
Q Consensus 151 Saaift~i~~~~~~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~ 196 (541)
.+++-...+.... ...+.+.+.+......+++...++..
T Consensus 400 ~s~v~~f~~~~~~-------l~~~~l~~~i~~~i~~~~~~~~~~~~ 438 (461)
T KOG3098|consen 400 ASCVAFFFSPYLL-------LYIYTLGLPIFCVIATTIFFIVAERT 438 (461)
T ss_pred HHHHHhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877554443221 34455555555555555554444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.3 Score=45.08 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=92.6
Q ss_pred CccchhHHHHHHHHHHHHhcCCc---cccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccch-HHHHH
Q 009176 4 NSNILQWLSLVGAIWLQSINGTN---SNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPL-WLVLL 78 (541)
Q Consensus 4 ~~~~~rw~~l~as~~v~~~~Gt~---Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp-~~vll 78 (541)
+....+|.++.-+...+...+.. |.=+.|.--.|-..+-+++..-.+--+..+|-.+ -+.-|.=..|.+. +..+.
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 34567788777777776555543 3445555555555677777777777777788754 7777887888773 66688
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeec--ccCCCCCceehhhH
Q 009176 79 IGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTI--KNFPFDRQVAVGIT 144 (541)
Q Consensus 79 iGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v--~NFP~~RG~a~gll 144 (541)
+|.+..++|- ++|+++..+-.. .-|+|-+.=++.|.|.+ |.+.+-+.+ ++.|++|-+|.+..
T Consensus 107 ~s~ii~~~g~-llY~~l~~~~~~-~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a~~ 170 (488)
T KOG2325|consen 107 VSFLIAIIGN-LLYLALAYVPNG-VKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFAAT 170 (488)
T ss_pred HHHHHHHHHH-HHHHHHHhcccc-hHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHHHh
Confidence 9999999995 567677776432 44666666667777755 456665554 77999998877643
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.3 Score=46.02 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCccccccchHHHHHHhCCChhhHHHHHHhhhhhc-ccchhhhhhccccchHHHHHHHHHHHHHHHHH
Q 009176 12 SLVGAIWLQSINGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGK-LFGWISGVASVYLPLWLVLLIGSTLGLIGYGL 90 (541)
Q Consensus 12 ~l~as~~v~~~~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~-~~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~ 90 (541)
..++-...|..+|.+= =..||..+=++-|+++.+...+.++..+=. ..-+.+.++.||.|+|..++++...+.+--..
T Consensus 273 i~~~v~~~qq~sGi~a-i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~ 351 (485)
T KOG0569|consen 273 IGIVVSFAQQFSGINA-IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL 351 (485)
T ss_pred HHHHHHHHHHhcCcce-eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 3333444455666544 457999999999999998888877777666 44889999999999999998888777654322
Q ss_pred H--HHHhhhccccchHH---HHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 91 Q--YLFLTHTISHLSYA---HIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 91 ~--~l~~~~~i~~~~~w---~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
+ -+...+... ...| ..|++++...++.+ .+-.+..-...=||. .|.+|.+......=++..+-...|--+.
T Consensus 352 ~~~~~~l~~~~~-~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~- 428 (485)
T KOG0569|consen 352 MSIALFLSNSFG-SWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ- 428 (485)
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2 222222221 1112 12333333333222 112233444467876 7999999988888888777766665554
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccc
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSP 191 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~ 191 (541)
+--+.|.+++=..|.+++.+..+
T Consensus 429 ----~~~g~~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 429 ----NVIGPYVFILFVIPLAIFLIYLY 451 (485)
T ss_pred ----HHhcchhhHHHHHHHHHHHHHHH
Confidence 22233555555556655554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.3 Score=48.02 Aligned_cols=131 Identities=24% Similarity=0.157 Sum_probs=84.2
Q ss_pred cccchH-HHHHHhCCChhhHHHHHHhhh-hhcccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHH
Q 009176 29 FPAYSS-QLKQLLSLSQLQLNNLAFASD-AGKLFGWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAH 106 (541)
Q Consensus 29 f~~ys~-~lk~~l~~sq~~l~~l~~~~~-~G~~~G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~ 106 (541)
||.|=| -+|+.+++|..+-..++...- +|.-.=..+|.+.||++++-++++--+.+.++=+..-..-++.-..++.+.
T Consensus 237 fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (417)
T COG2223 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV 316 (417)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence 344433 368999999999877766655 555668899999999986655554444444333333333322211122222
Q ss_pred ----HHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 107 ----IFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 107 ----l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
+....+..|.|.. +++.--=+-||++-|.|+|+.-+.=||.|.+.-+.....+
T Consensus 317 ~~~~~l~l~~~~G~GnG----svfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 317 FVAVFLALFVFAGLGNG----SVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred HHHHHHHHHHHhccCcc----hheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHH
Confidence 1222233344444 6667777889999999999999999999988888777766
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=4.4 Score=45.44 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh
Q 009176 433 LYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH 491 (541)
Q Consensus 433 l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD 491 (541)
++....+.+++-|+.+++.--+..+. ..++.|.+-|-++.+..+|+.+++.++|.+-=
T Consensus 113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 113 LYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 45566788999999887777766543 33567788888888888999998888876653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.83 Score=51.03 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=112.9
Q ss_pred hhhhchhHHHH-HHHHHHhhcccceeecchHHH-HhhhcCCcccchhhhhhhcccccccccccch-hhhcccCCCCChhH
Q 009176 333 LMLQRVDFWLY-FFVYFSGATLGLVFLNNLGQI-AESRGCSGTSSLVSLSSSFGFFGRLIPSLFG-YFFSRSKHMIPSPA 409 (541)
Q Consensus 333 q~l~~~~Fwll-f~~~~~g~g~Glm~I~n~g~i-~~slg~~~~~~~Vsl~Si~N~~GRl~~G~~s-~~~~~~~~~~~R~~ 409 (541)
+++.+++--++ |++.+.|.|.|+..- -+ .. .|..+ ...++-++.++-|..|-+..=+.+ +++ + ++++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~t-FL-fWHled~~--~~~~LfGv~~a~~~~gEI~~~ffs~klI-~---kiGHv~ 437 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFT-FL-FWHLEDLG--GIKTLFGVVSALCHAGEILFYFFSFKLI-E---KIGHVN 437 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHH-HH-HHHHhhcC--CcceeeeehhhhhccchHHHHHHHHHHH-H---Hhcccc
Confidence 56666655443 444555555554321 00 00 11111 344555577777888887744443 443 3 347777
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhh-hhhhhHHHHHHHHH
Q 009176 410 SIGALMAPMAGAFMLLLNETNVALYT-STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVA-NIPIGSFLFGYLAA 487 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~~~~~~~l~~-~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~-a~~~Gs~l~~~laG 487 (541)
.+...+....+=++.+....+.+..+ .=.+=|+++|.+|..+-+.+++.=-++-=.+..+++.. -.++|==++..++|
T Consensus 438 v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG 517 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGG 517 (618)
T ss_pred eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhh
Confidence 66655555555566666655544333 55788999999999999999999888877777777652 22344444445566
Q ss_pred HHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 488 LVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 488 ~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
.+..+-+. +.+|.+.++.|++.+++-..+.++-
T Consensus 518 ~~v~~fg~-------------~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 518 FVVERFGA-------------RTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred hhheeehh-------------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666665 8999999999988888777765443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=86.94 E-value=7.4 Score=39.48 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=74.5
Q ss_pred HHHHHHhhcccceeecch--HHHHhhhcCCccc--chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 344 FFVYFSGATLGLVFLNNL--GQIAESRGCSGTS--SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 344 f~~~~~g~g~Glm~I~n~--g~i~~slg~~~~~--~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
.....+...+|..|.... .|+-+.+|+++.. ..-..-.+...+| +.+|.+-|.. -||...+. ..+...
T Consensus 6 ~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~------gp~~~l~i-G~~~~~ 77 (250)
T PF06813_consen 6 VASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF------GPWVVLLI-GAVLGF 77 (250)
T ss_pred HHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc------chHHHHHH-HHHHHH
Confidence 334445556776666533 5555677886431 2222222333344 4567773321 15554443 333344
Q ss_pred HHHHHHh--hcc--c-chhHHHH---HHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhh
Q 009176 420 GAFMLLL--NET--N-VALYTST---AIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYH 491 (541)
Q Consensus 420 ~~~ll~~--~~~--~-~~l~~~s---~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD 491 (541)
++...+. ... + ..++..+ .+.|.+-+...+..-....+.| ++|=|+-=|++-...++++-++..+...+++
T Consensus 78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 4544332 111 1 1222222 3333332222233334445788 4688999999999999999999888888886
Q ss_pred hc
Q 009176 492 KE 493 (541)
Q Consensus 492 ~~ 493 (541)
.+
T Consensus 157 ~~ 158 (250)
T PF06813_consen 157 DD 158 (250)
T ss_pred CC
Confidence 64
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.65 E-value=6.9 Score=41.99 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHH
Q 009176 404 MIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 404 ~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~ 483 (541)
+.-|..+ ..+++.+++.++=.......|+.++.++|.+-+..-.+.|+++-+.|+ |+-+..=|+-.++-.+|+-+.+
T Consensus 75 g~er~l~--~~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa 151 (395)
T COG2807 75 GEERSLF--LALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAA 151 (395)
T ss_pred hhHHHHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHh
Confidence 3344443 344444555443333333579999999999999999999999999986 5566666666666666665554
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
-++-.+-....+ .+.+...++..++++.++=+.
T Consensus 152 ~lavpla~~~~g------------W~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 152 ALAVPLAQHSGG------------WRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhhhHHHHhhcc------------HHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444 899999999999888755443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.6 Score=47.50 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=84.9
Q ss_pred hhchhHHHH---HHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChh
Q 009176 335 LQRVDFWLY---FFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSP 408 (541)
Q Consensus 335 l~~~~Fwll---f~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~ 408 (541)
.|+.+||.+ ++.+++..|+=+.+.. --..|..|++ +..+..|..++...+.-.+.|++ |++. .+|.
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~--iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg------~kK~ 75 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFP--IWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLG------LKKH 75 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT------TCSH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHH--HHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhh------hhHH
Confidence 456777744 4444554444222210 0011235554 44556666666555555566777 5543 2344
Q ss_pred HHHHHHHHH-HHHHHHHHhhcc--cchhHH----HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHH
Q 009176 409 ASIGALMAP-MAGAFMLLLNET--NVALYT----STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 409 ~~l~~~~~~-~~~~~ll~~~~~--~~~l~~----~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l 481 (541)
....+..+. ....++...+.. ...+++ +.+.+|++|.+..++.=+.+.+. .|..+..||=.=+--.+|-.+
T Consensus 76 Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 76 LLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp HHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHH
Confidence 332222222 222233322211 112333 33445666777777776666555 455666788777777777777
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHH
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTF 524 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~ 524 (541)
...++|++++.+ -+..|++..+..++-++
T Consensus 154 ~s~~~G~L~~i~--------------p~~~fwi~s~~~~il~l 182 (412)
T PF01306_consen 154 ASLLAGILFNIN--------------PNIIFWIASAAAIILLL 182 (412)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhheeeeeC--------------ccHHHHHHHHHHHHHHH
Confidence 788899999864 36778876554443333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.60 E-value=1.1 Score=49.58 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=77.8
Q ss_pred HHHHhCCChhhHH-HHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 009176 36 LKQLLSLSQLQLN-NLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSYAHIFLLTVL 113 (541)
Q Consensus 36 lk~~l~~sq~~l~-~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l 113 (541)
+|.+++.|+++.. .++++.-++.-- =+.-+++.-..+-+-++.+|..+.+.++.+...+-.. |+++....+
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-------w~~~~~~v~ 340 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-------WMMFAAGVV 340 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-------hhhhHHHHH
Confidence 7899999999999 555555555422 2222355555665568889998888887665433222 666665555
Q ss_pred hccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 114 AGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 114 ~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.+.+..-.=...-..+.-..|+.||++.++.-+.-||++-+-+.+|..++
T Consensus 341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 54444322222333444677899999999999888877766666655554
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.11 E-value=7.7 Score=36.86 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=80.8
Q ss_pred cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHhhhccchh
Q 009176 374 SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN---VALYTSTAIIGVCSGAITSI 450 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~---~~l~~~s~liG~~yG~~~~l 450 (541)
....+...+...++.+..|.+.|.. +|...+.........+.++.....+ ..+.+...+.|+..|...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 114 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRY-------GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPV 114 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccc-------cchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHH
Confidence 4455556666666667777774432 2222222222212222222222222 33555555689999999999
Q ss_pred hHHHhhhhcCC-Ccccchhhhhhh-hhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 451 SVTTTTELFGT-KNFSVNHNIVVA-NIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 451 ~P~ivse~FG~-k~fg~nyg~~~~-a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
..++++|.+.. ++.+...+.... ...+|..+++.+++.+.+. .. ..++..|.+........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 115 ASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LL----------WGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----------cchHHHHHHHHHHHHHH
Confidence 99999999988 678888888887 5777777778788888776 21 22677666665554333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.7 Score=42.81 Aligned_cols=107 Identities=9% Similarity=-0.006 Sum_probs=53.9
Q ss_pred cchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhcc--c-c----hhHHHHHHHHHhhhc
Q 009176 374 SSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNET--N-V----ALYTSTAIIGVCSGA 446 (541)
Q Consensus 374 ~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~-~----~l~~~s~liG~~yG~ 446 (541)
....++..++..+.-.+.|.++|.. |.|++-.|||.+... +++++++.++.... + . .+.+..++.+++|-.
T Consensus 45 g~i~~i~ri~dai~dp~~G~lsD~t-~sr~Grrrp~il~g~-i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~ 122 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGWIVNNT-RSRWGKFKPWILIGT-LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTI 122 (473)
T ss_pred HHHHHHHHHHHHHhhchheeehhcC-CCCCCCcchhHhhhh-HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777788886654 455566678876543 44455543333221 1 1 222333455666655
Q ss_pred cchhhHHHhhhhc-CCCcccchhhhhhhhhhhhHHHH
Q 009176 447 ITSISVTTTTELF-GTKNFSVNHNIVVANIPIGSFLF 482 (541)
Q Consensus 447 ~~~l~P~ivse~F-G~k~fg~nyg~~~~a~~~Gs~l~ 482 (541)
...-+-++.+|+= ..+.=....++-.....+|+++.
T Consensus 123 ~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 123 MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT 159 (473)
T ss_pred HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555553 23333333444333333444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=84.92 E-value=2.7 Score=46.56 Aligned_cols=131 Identities=16% Similarity=0.076 Sum_probs=85.1
Q ss_pred cCCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchH--HHHHHHH----HHHHHHHHHHHHHh
Q 009176 23 NGTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLW--LVLLIGS----TLGLIGYGLQYLFL 95 (541)
Q Consensus 23 ~Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~--~vlliGa----~~~~~GY~~~~l~~ 95 (541)
.|-+-..+.-.-=.++.+|+|++|+..+++..++-..+ .++.|.+.||++|+ .++.++. +..+.|+..++...
T Consensus 295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~ 374 (477)
T PF11700_consen 295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF 374 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34333444444445678999999999999999998866 78999999999999 5554443 34445666555553
Q ss_pred hhccccchHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhHHHhhhhHHHHHHHHH
Q 009176 96 THTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGITSSYLGLSAKLYTSAV 159 (541)
Q Consensus 96 ~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gllk~~~GLSaaift~i~ 159 (541)
.| .-+-|.++++.++.|...+..++++=..=.+-=|+.|- +-.-|++++++..-+.+-
T Consensus 375 ~g---~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e---~efFgly~i~gk~ss~lG 432 (477)
T PF11700_consen 375 FG---LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE---AEFFGLYAITGKASSWLG 432 (477)
T ss_pred cC---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHHHHHHH
Confidence 33 23457777887888887776555544333344466443 555556666665544443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=82.09 E-value=13 Score=40.45 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhh
Q 009176 409 ASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVV 472 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~ 472 (541)
+.+.+..++.++.++++....+ ...|++-++.+.+|-...++.-.-++..--.+.|+-.+|+=+
T Consensus 318 l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 318 LALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHH
Confidence 3444455556666666666666 357888889999999888888888887777777777776633
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.67 E-value=19 Score=39.55 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=46.1
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhcccc-chHHHHHHHHHHhccccccccceeeeeecccCCCCCceehhhH
Q 009176 66 VASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISH-LSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPFDRQVAVGIT 144 (541)
Q Consensus 66 ll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~-~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~~RG~a~gll 144 (541)
.+.-+.|.+.=+..+-+...+........+....+. ..+|..++..++.|.+++. ...++..=+..||++ -++-.
T Consensus 67 ~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~-~q~s~~gla~~fp~~---~~~a~ 142 (437)
T TIGR00939 67 FLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMAL-LQGSLFGLAGVFPST---YSSAV 142 (437)
T ss_pred HHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhh-hcccchhhcccCCHH---HHHHH
Confidence 444445653333444444444433333323322222 3588888888888888764 445566666789964 23333
Q ss_pred HHhhhhHHHHHH
Q 009176 145 SSYLGLSAKLYT 156 (541)
Q Consensus 145 k~~~GLSaaift 156 (541)
....|+||.+=+
T Consensus 143 ~~G~g~aGv~~s 154 (437)
T TIGR00939 143 MSGQGLAGVLTS 154 (437)
T ss_pred HhcchhHHHHHH
Confidence 444566665533
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 80/547 (14%), Positives = 157/547 (28%), Gaps = 176/547 (32%)
Query: 22 INGTNSNFPAYS-------SQLKQLLSLSQLQLNNLAFASDAGKLFGWISGVASVYLPLW 74
+ N F Y+ +L+Q +L +L+ V +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPA---------------KNVL-ID---- 156
Query: 75 LVLLIGSTLGLIGYGLQYL----FLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTI 130
G++G G ++ L++ + IF W+N +
Sbjct: 157 ---------GVLGSGKTWVALDVCLSYKVQCKMDFKIF-----------WLN-------L 189
Query: 131 KNFPFDRQVAVGITSSYLGLSAKLYT---SAVNAIETSSPNKRAKLYLLFNSIFP--LLA 185
KN V + + + + N + LL + + LL
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL- 248
Query: 186 CVVTSPVVREIGDHVQESSS------SSRR--RTRGGFVFMFFVTIVTGCYAVL----GS 233
+ +VQ + + S + TR V F++ T + L +
Sbjct: 249 ----------VLLNVQNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMT 297
Query: 234 LDLSKLKTL-----------LPPVKNLIGIVICLLAPLVIPL-GEKIRCFVEDKRLINRV 281
L ++K+L LP + P + + E IR + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPRE-------VLTTNPRRLSIIAESIR---DGLATWDNW 347
Query: 282 KRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEE---IGAMLMLQRV 338
K V + +++++ +E+ + E +++ + L I +L L
Sbjct: 348 KHV----NCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIPTIL-LSL- 394
Query: 339 DFWLYFFVYFSGATLGLVFLNNLGQ--IAESRGCSGTSSLVSL----------------- 379
W +V +N L + + E + T S+ S+
Sbjct: 395 -IWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 380 -------SSSFGFFGRLIPSLFGYFFSR-SKHMIPSPASIGALMAPMAGAF-MLLLN--- 427
+F + P L YF+S H+ F M+ L+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL------KNIEHPERMTLFRMVFLDFRF 502
Query: 428 -ETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLA 486
E + + STA + ++ + + N +V A I FL
Sbjct: 503 LEQKI-RHDSTA-WNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEE 557
Query: 487 ALVYHKE 493
L+ K
Sbjct: 558 NLICSKY 564
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.82 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.82 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.49 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.46 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.33 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.02 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.72 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.7 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.35 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 97.11 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 96.47 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=193.88 Aligned_cols=403 Identities=13% Similarity=0.031 Sum_probs=265.7
Q ss_pred hhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
.||..+..........+ ..+.++.+-|.+.+.+ +|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 44665555555544433 4577888889999999 9999999999999999966 8999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
+|.......... . .++|.+.+..++.|.+.+...+++.....+.||+ +||.+.|+.-...+++..+-..+...+..
T Consensus 104 ~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 104 AVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877653321 1 2346777778888998888888887777899985 69999999888888877776666544331
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCC
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLP 244 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~ 244 (541)
. .++-..-+.+.+....+..++...+++.. +... ..++
T Consensus 181 ~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~---------------------------------- 218 (451)
T 1pw4_A 181 W--FNDWHAALYMPAFCAILVALFAFAMMRDT-PQSC-----GLPP---------------------------------- 218 (451)
T ss_dssp H--TCCSTTCTHHHHHHHHHHHHHHHHHCCCS-STTT-----CCCS----------------------------------
T ss_pred H--hccHHHHHHHHHHHHHHHHHHHHhhccCC-Hhhc-----CCCC----------------------------------
Confidence 0 01111112222222222222222222111 0000 0000
Q ss_pred chhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCC
Q 009176 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLG 324 (541)
Q Consensus 245 ~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+++.+++ .+++. ++++.++ .
T Consensus 219 -----------------------------------------~~~~~~~----~~~~~----------~~~~~~~-----~ 238 (451)
T 1pw4_A 219 -----------------------------------------IEEYKND----YPDDY----------NEKAEQE-----L 238 (451)
T ss_dssp -----------------------------------------CTTTCCC--------------------------------
T ss_pred -----------------------------------------hhhhccc----ccccc----------hhhhhcc-----c
Confidence 0000000 00000 0000000 0
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhccc
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRS 401 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~ 401 (541)
...+...++.++++.+|.+.+..++..............+.++ +|++ +.....++.++.+.+|+++.|.+.|...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~- 317 (451)
T 1pw4_A 239 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR- 317 (451)
T ss_dssp CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-
T ss_pred ccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0122335788999999999888877655544445555555555 5665 34578888899999999999988443201
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh-
Q 009176 402 KHMIPSPASIGALMAPMAGAFMLLLNET--N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI- 477 (541)
Q Consensus 402 ~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~- 477 (541)
+ .|...+....+..+++.+++.... + ..+.+...+.|++++..++...+++.|.+..++.|+.+|+......+
T Consensus 318 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (451)
T 1pw4_A 318 G---NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394 (451)
T ss_dssp T---CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred C---CchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence 1 233333333332324555444432 2 34566778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 478 GSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
|..+++.+.|.++|..+ |+..|++.+++++++.++.+++.++.
T Consensus 395 g~~~~~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HHHHHHHHHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999753 89999999999999988888765443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=190.29 Aligned_cols=395 Identities=9% Similarity=0.064 Sum_probs=257.6
Q ss_pred hhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
++|..+..........|. .+.++.+-|.+++.+|+|.+|...+.....+|..+ .++.|.+.||+|+|.++.+|.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444444433333 35778888999999999999999999999999865 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh-
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE- 163 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~- 163 (541)
+|..+.+..... .++|.+.+..++.|.+.+..++++.....+.+|+ +||.+.|+.-...+++..+-..+...+.
T Consensus 103 ~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 103 LGAALFWPAAEI----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhcccc----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888764222 3578888889999999998888888888899986 7999999998888888887777665544
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
... ++.. +.. .... +++ +...+........ -..|..
T Consensus 179 ~~~--~~~~---------~~~--------~~~~-~~~----------~~~~~~~~~~~~w-~~~~~~------------- 214 (438)
T 3o7q_A 179 SNV--PHQS---------QDV--------LDKM-SPE----------QLSAYKHSLVLSV-QTPYMI------------- 214 (438)
T ss_dssp TSS--CCCC---------HHH--------HHHS-CHH----------HHHHHHHHHHHHH-HHHHHH-------------
T ss_pred ccc--cccc---------ccc--------cccC-Ccc----------hhhhhhhhhhhhH-HHHHHH-------------
Confidence 200 1100 000 0000 000 0000100000000 000000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
..++.+++...... .+ . ++.++ +.++ +++.
T Consensus 215 -----~~~~~~~~~~~~~~-~~-----------~----p~~~~------------~~~~----------~~~~------- 244 (438)
T 3o7q_A 215 -----IVAIVLLVALLIML-TK-----------F----PALQS------------DNHS----------DAKQ------- 244 (438)
T ss_dssp -----HHHHHHHHHHHHHH-CC-----------C----CCCTT------------TCCC----------CSST-------
T ss_pred -----HHHHHHHHHHHHHH-Hc-----------C----Ccccc------------cccc----------cccc-------
Confidence 00000001110000 00 0 00000 0000 0000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHH-Hhhh-cCC--cccchhhhhhhcccccccccccchhhhc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQI-AESR-GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i-~~sl-g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
.+...+.++.++++.+|...+..++..+....+...+... .+.. |++ +.....++..+.+.+||+++|.+.|..
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~- 322 (438)
T 3o7q_A 245 -GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF- 322 (438)
T ss_dssp -TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred -cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0122356789999999999999888877776677777777 6664 775 456778888899999999999885432
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhH
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs 479 (541)
+|...+....++.+++.+++....+....+...++|++++..++...+.+.|.++.+ -++.-++...+ .+|+
T Consensus 323 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~ 394 (438)
T 3o7q_A 323 ------APHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGG 394 (438)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-THHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-HHHH
Confidence 444555555555555555555554444455568999999999999999999999965 66666666644 4899
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
.++|.+.|.++|..++ |+.+|.+.+.++++.
T Consensus 395 ~~~~~~~g~l~~~~g~------------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGN------------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHHTS------------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHH
Confidence 9999999999999887 788888765544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=142.76 Aligned_cols=411 Identities=13% Similarity=0.030 Sum_probs=224.6
Q ss_pred chHHHHHH-----hCCChhhHHHHHHhhhhhccc-chhhhhhccc-cchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 32 YSSQLKQL-----LSLSQLQLNNLAFASDAGKLF-GWISGVASVY-LPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 32 ys~~lk~~-----l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~-~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
..+-+++. +|+|.+|...+.....+|..+ .+++|.+.|| +|+|.++.+|.+...+|..+...+ .++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 34455666 999999999999999999966 8999999999 899999999999999988766431 235
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCCC-C--CceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFPF-D--RQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~--RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~ 181 (541)
|.+.+..++.|.+.+...+++.....+.||+ + ||++.++.-....+++.+-..+...+.. ...-...+.+...
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~g~~~~f~~~~~ 184 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE----AAGYHVAFSLAAI 184 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHH
Confidence 6777788888888887777777777788986 5 6667777667777777666666555541 1111112222222
Q ss_pred hhHhHhhccceeeeecCCCcccccccc-c-ccCCc-ch----hhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHH
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSR-R-RTRGG-FV----FMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVI 254 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~-~-~~~~~-f~----~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (541)
..+++++...+.++...+++..+..++ + +++.. +. .++...+. ..+.. ..+..+. ..........
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~--~~~~~~~----~~~~~~~~~~ 256 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAI--IVVMN--LVGWNSL----PAYINLLTIV 256 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHH--HHHHH--HHSSCCT----THHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHH--HHHHH--hccCccc----ccchhhhhHH
Confidence 233333333333222011110000000 0 00000 00 00000000 00000 0000000 0000000000
Q ss_pred HhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhh
Q 009176 255 CLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLM 334 (541)
Q Consensus 255 ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~ 334 (541)
....|... . .. .. ++...+. .+.
T Consensus 257 ~~~~~~~~------~-------------------------~~-~~------------~~~~~~~-------------~~~ 279 (491)
T 4aps_A 257 AIAIPVFY------F-------------------------AW-MI------------SSVKVTS-------------TEH 279 (491)
T ss_dssp HHHHHHHH------H-------------------------HH-HC-----------------------------------
T ss_pred HHHHHHHH------H-------------------------HH-Hh------------hcccccH-------------HHH
Confidence 00000000 0 00 00 0000000 000
Q ss_pred hhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHH
Q 009176 335 LQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPAS 410 (541)
Q Consensus 335 l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~ 410 (541)
.+...+|.+++...+....-......+....+. .+.+ +.....++.++...++....|.+ |++. || +..+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-~r--~~~~~~~ 356 (491)
T 4aps_A 280 LRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK-KN--QPSSPTK 356 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT-TC-----CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh-cc--CCCchHH
Confidence 111223444433332222222223334444443 3433 45667777778888888887766 5443 22 2233333
Q ss_pred HHHHHHHHHHHHHHHhhc---------cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 411 IGALMAPMAGAFMLLLNE---------TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~---------~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
+....++++++++++... .+ ..+.+...+.|++.+...+...+.+.|.+..++-|+..|+..+...+|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 357 FAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554433321 12 34666778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
+++.+.|.+.|. . |...|.+.+++++++.++.+++.++.||
T Consensus 437 i~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 437 LNAQLVTLYNAK--S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHGGGGGGS--S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcc--c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988764 2 6788999999998888887777655554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=152.35 Aligned_cols=183 Identities=8% Similarity=0.043 Sum_probs=122.4
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceee-cchHHHHhh-hcC---C--cccchhhhhhhcccccccccccchhhhcccCC
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFL-NNLGQIAES-RGC---S--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKH 403 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I-~n~g~i~~s-lg~---~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~ 403 (541)
.++.++++++|.+.+..++.. .+.... ...+...+. ++. + ......++..+.+.+|++..|.+.|..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----- 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI----- 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 467889999998776533322 121111 112222222 111 1 113455566677888999888884432
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh-hhhhhhhHHH
Q 009176 404 MIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV-VANIPIGSFL 481 (541)
Q Consensus 404 ~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~-~~a~~~Gs~l 481 (541)
+|...+....+.++++++++....+ ..+.+...+.+++++.......+.++|.+..+.-|+.+|+. ..+..+|+.+
T Consensus 287 --g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 287 --GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444444444555555555554433 34555566778888877777889999999999999999994 7888899999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
+|.+.|.++|..+ |+..|.+.+++++++.++.+.+.+++|
T Consensus 365 gp~l~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 365 MSVLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTHHHHTHHHHSH-------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred hhhhHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999643 789999999999998887766544444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-15 Score=152.77 Aligned_cols=336 Identities=12% Similarity=0.036 Sum_probs=217.0
Q ss_pred ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 26 NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 26 ~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
.+.+..+-|.+++++|+|.+|...+.....++..+ .++.|.+.||+|+|.++.+|.+...++......+ .++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 34455566778999999999999999999999966 8999999999999999999999999998776653 246
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCC-CCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCc-ccchhhhhchhh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFP-FDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKR-AKLYLLFNSIFP 182 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP-~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d-~~~fLllla~~p 182 (541)
|.+.+..++.|.+.+..+++......+.+| ++|+++.|+.-...+++..+-..+...+. +. .-...+.+....
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----TMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HhccHHHHHHHHHHH
Confidence 788888888899988888877777778887 57999999887777777666555544332 10 000000000000
Q ss_pred hHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccc
Q 009176 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVI 262 (541)
Q Consensus 183 ~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~i 262 (541)
.++.. .....
T Consensus 164 ~~~~~----------------------------------------------------------------------~~~~~ 173 (375)
T 2gfp_A 164 CAGVT----------------------------------------------------------------------FSMAR 173 (375)
T ss_dssp HHHHH----------------------------------------------------------------------CCCCC
T ss_pred HHHHH----------------------------------------------------------------------HHHHH
Confidence 00000 00000
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
-+ ++ ++.+ + + ++ + ++..+.++.++++++|.
T Consensus 174 ~~----~~-----------~~~~-------------~-~-----------~~-~---------~~~~~~~~~~~~~~~~~ 203 (375)
T 2gfp_A 174 WM----PE-----------TRPV-------------D-A-----------PR-T---------RLLTSYKTLFGNSGFNC 203 (375)
T ss_dssp SS----CC-----------CSTT-------------T-C-----------CC-C---------CTTTCSTHHHHHHHHHH
T ss_pred HC----cc-----------cCCC-------------C-c-----------cc-c---------cHHHHHHHHhcCcchHH
Confidence 00 00 0000 0 0 00 0 01123467889999999
Q ss_pred HHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
+.+..++.......+......+.++ +|++ +.....++.++...+|++..|.+.|.. +|...+.... ...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-------~~~~~~~~~~-~~~ 275 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-------STLMWQSVIC-CLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-------HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHH
Confidence 9888776544433333333343333 4543 344566777777778888777664321 3322211111 111
Q ss_pred HHHH--HHhh--ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 420 GAFM--LLLN--ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 420 ~~~l--l~~~--~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
.+.+ .... ..+ ..+++...+.|+++|..++...+.+.|.+. ++.|+..|+......+|..+++.+.|.++|..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2211 1111 112 235567789999999999999999999998 999999999999999999999999999987543
Q ss_pred CCCCCCccccccccHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~ 515 (541)
|+..|.+.
T Consensus 355 -------------~~~~~~~~ 362 (375)
T 2gfp_A 355 -------------GSLGLLMT 362 (375)
T ss_dssp -------------HHHHHHHH
T ss_pred -------------ccHHHHHH
Confidence 67777764
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=136.54 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCcccc-ccchHHHHHHhC------CChhhHHHHHHhhhhhccc-chhhhhhcccc-chHHHHHHH
Q 009176 10 WLSLVGAIWLQSINGTNSNF-PAYSSQLKQLLS------LSQLQLNNLAFASDAGKLF-GWISGVASVYL-PLWLVLLIG 80 (541)
Q Consensus 10 w~~l~as~~v~~~~Gt~Y~f-~~ys~~lk~~l~------~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~-pp~~vlliG 80 (541)
|+..++..+...+. |.. +...+-+++.+| +|.+|...+.....++..+ .+++|.+.||+ |++.++.+|
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 15 PYIIASEACERFSF---YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45444444443332 222 334455788899 9999999999999999866 88999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhh---HHHhhhhHHHHHH
Q 009176 81 STLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGI---TSSYLGLSAKLYT 156 (541)
Q Consensus 81 a~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gl---lk~~~GLSaaift 156 (541)
.+...+++.+...+- ..+|.+.+..++.|.+.+..+++......+.||+ +||++.++ .-....+++++-.
T Consensus 92 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 92 SLIYCVGHAFLAIFE------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887765432 1457777778888888887777776667788987 68877666 6566666665555
Q ss_pred HHHHHH
Q 009176 157 SAVNAI 162 (541)
Q Consensus 157 ~i~~~~ 162 (541)
.+...+
T Consensus 166 ~~~~~l 171 (524)
T 2xut_A 166 LSMPLL 171 (524)
T ss_dssp HTSTHH
T ss_pred HHHHHH
Confidence 544434
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-10 Score=118.22 Aligned_cols=126 Identities=12% Similarity=-0.006 Sum_probs=87.2
Q ss_pred cccccch---HHHHHHhCCC--------hhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 009176 27 SNFPAYS---SQLKQLLSLS--------QLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLF 94 (541)
Q Consensus 27 Y~f~~ys---~~lk~~l~~s--------q~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~ 94 (541)
|+.++++ |++++.++.+ +++...+..+..+|..+ +++.|.+.||+|+|.++.++.+...+|-.+.-..
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 5566665432 23444566667788877 7899999999999999999999888876554322
Q ss_pred hhhc-----------cccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHH
Q 009176 95 LTHT-----------ISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSA 152 (541)
Q Consensus 95 ~~~~-----------i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSa 152 (541)
..+. .-+..+|++.+.=++.|.|.+...+.+..-..+..|. +||...++.-....+..
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh
Confidence 2111 0134678889999999998887777777777788887 68888877655554433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-08 Score=102.16 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHh-h-----hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAE-S-----RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-s-----lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
+.+|.+++..++....-..+...+....+ . +|.+ +.....++..+.+.++.+.+|.+.|. .++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr------~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR------IIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccchH
Confidence 35777777666554332223333444333 3 6765 45678899999999999999988542 025666
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCc--ccchhhhhhhhhhhhHHHHHHHH
Q 009176 410 SIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKN--FSVNHNIVVANIPIGSFLFGYLA 486 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~--fg~nyg~~~~a~~~Gs~l~~~la 486 (541)
.+....++..++.++.+...+ ..++++-.+.|++.|..++..+++++|.|..++ -+..+++...+..+|..+++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 666666777777776666655 467788899999999999999999999999988 78889989999999999999999
Q ss_pred HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 487 ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 487 G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
|.+.|..+ ++..|.+.+..++++.++.++...|
T Consensus 167 ~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQEAAG-------------YHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99988643 8999999988888777766555433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-08 Score=103.29 Aligned_cols=175 Identities=12% Similarity=0.010 Sum_probs=130.7
Q ss_pred hchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 336 QRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 336 ~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
+...++.+++..++....-.++..-+.++.+++ .+ +.....++..+...++.+.+|.+.|.. +|...+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-------g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-------NPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-------CchHHHHH
Confidence 334455555554443222222223345555566 54 456788888999999999999885532 56666666
Q ss_pred HHHHHHHHHHHHhh----ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 414 LMAPMAGAFMLLLN----ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 414 ~~~~~~~~~ll~~~----~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
..++.+++.++.+. ..+ ..+++.-.+.|++.|..++...++++|.+..|+-+...|+...+..+|..+++.++|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666665 545 4677888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.+..++ ++.+|++.+.++++..++.++..
T Consensus 178 l~~~~g~------------w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 178 GMAWFND------------WHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHTCC------------STTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887664 78899999988877776665553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=98.49 Aligned_cols=171 Identities=15% Similarity=0.043 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHH-HHhhhc------CC--cccchhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQ-IAESRG------CS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg------~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
+.+|.+++..++....-.+....+.. +.+.+| .+ +.....++..+...++.+.+|.+.|.. .+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF------FGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS------SCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcch
Confidence 45677766665553332223333443 344567 64 456788889999999999999885421 1444
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCccc---chhhhhhhhhhhhHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNET-N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFS---VNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~-~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg---~nyg~~~~a~~~Gs~l~~ 483 (541)
..+.+..++.+++.++.+... + ..+++.-.+.|++.|..++..+++++|.|..++-+ ..+|+...+..+|..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666665554 4 45777888999999999999999999999999885 456668889999999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
.++|.+.|.. . ++..|.+.+.+++++.++.+
T Consensus 166 ~~~~~l~~~~-g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 166 LSMPLLLKNF-G------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HTSTHHHHTS-C------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-c------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999998754 2 89999999888776665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=89.98 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=116.9
Q ss_pred hHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHH---hhccc-chhH
Q 009176 361 LGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLL---LNETN-VALY 434 (541)
Q Consensus 361 ~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~---~~~~~-~~l~ 434 (541)
+.++.+.+|.+ +.....++..+...++.+..|.+.|.. +|...+....++++++.++. ....+ ..++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-------SYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566778875 356788888888999999999884422 66666666666677776655 44444 4577
Q ss_pred HHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCC-C-----C-------c
Q 009176 435 TSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAH-N-----G-------K 501 (541)
Q Consensus 435 ~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~-~-----~-------~ 501 (541)
+.-.+.|++.|..++..+++++|.+..|+-+...|+...+..+|..+++.+++.+.+......+ + . .
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 7889999999999999999999999999999999999999999999999999999833322100 0 0 0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 502 CMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 502 C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
-...+.++..|++.+.++++..++.+.
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 001122678888877776665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=96.08 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=112.3
Q ss_pred chHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+..+.+++|.++ .....++..+.+.++.+..|.+.|.. +|...+.......+++.++.....+ ..+++.
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-------GRRPVILVGMSIFMLATLVAVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4556677777753 45688888999999999999884432 2222233344445555555444444 457778
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
..+.|++.|..++..+++++|.+..|+.+...++...+..+|..+++.++|.+.|..+ ++..|.+.+
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------------~~~~~~~~~ 161 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-------------WRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-------------HHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999987643 799999888
Q ss_pred HHHHHHHHHH
Q 009176 517 SFCLFGTFLA 526 (541)
Q Consensus 517 ~~~~~g~~ls 526 (541)
.++++..++.
T Consensus 162 ~~~~~~~~~~ 171 (375)
T 2gfp_A 162 VLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHH
Confidence 8776665533
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=7.6e-05 Score=77.75 Aligned_cols=167 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred hhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 333 LMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
..+|+++||.+...+++....--++..-+....+ .+|.+ +....+++..+...+|++.+|.++|.. +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-------Grr~ 74 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-------GLRK 74 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-------TTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchH
Confidence 4688999999887665543332233334444343 46775 456788999999999999999985532 2222
Q ss_pred HHHHHHHHHHH---HHHHHhhccc--chhHHHHHHH----HHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 410 SIGALMAPMAG---AFMLLLNETN--VALYTSTAII----GVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 410 ~l~~~~~~~~~---~~ll~~~~~~--~~l~~~s~li----G~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
.+.+......+ ..+....... ..+.....+. |++++...++....+.|. .++.+..+|.......+|..
T Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 75 YLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp HHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHH
Confidence 22222222111 1111111100 0122222233 333444444444444443 25667788888888889999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
+++.++|.+.|. . ++..|++.+..+++.
T Consensus 153 ~~~~l~~~l~~~--~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 153 LGASIVGIMFTI--N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHHHH--C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHh--c------------hhHHHHHHHHHHHHH
Confidence 999999999874 3 688888776654333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0047 Score=64.64 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=85.5
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh------------------ccc-chhHH
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN------------------ETN-VALYT 435 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~------------------~~~-~~l~~ 435 (541)
..+|...+...+|-+++|+++|. ++|...+.+..+++.++-++.++ ..+ ..+.+
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr-------~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNR-------FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 45566666677777788888553 27888877777777777655542 223 35777
Q ss_pred HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 436 STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 436 ~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
+=.+.|++-|+..++.|++++|....++-+..-++...+..+|..+...+...+.+.
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 889999999999999999999999999999999999999999888877666655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.82 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.62 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.52 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.16 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.9e-20 Score=191.49 Aligned_cols=401 Identities=13% Similarity=0.046 Sum_probs=254.4
Q ss_pred chhHHHHHHHHHHHHhc-CCccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHH
Q 009176 7 ILQWLSLVGAIWLQSIN-GTNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLG 84 (541)
Q Consensus 7 ~~rw~~l~as~~v~~~~-Gt~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~ 84 (541)
+-||..+.......... .....++...|.++| +|+|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+..
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 34688877665443333 234567888898875 899999999999999999966 799999999999999999999998
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh
Q 009176 85 LIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE 163 (541)
Q Consensus 85 ~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~ 163 (541)
.++....-.+.... ..+|.+.+.-++.|.+++....++.....+.||+ +||.+.|+.-...++++.+-..+.....
T Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 100 AAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 88887765544332 1346667777888888887777777777899986 5999999988888887766555444332
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
.. .++-...+.+.+....++.++...+.|.. |.+. .. ++
T Consensus 177 ~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~--~~------------------------------- 215 (447)
T d1pw4a_ 177 AW--FNDWHAALYMPAFCAILVALFAFAMMRDT-PQSC-----GL--PP------------------------------- 215 (447)
T ss_dssp HH--TCCSTTCTHHHHHHHHHHHHHHHHHCCCS-STTT-----CC--CS-------------------------------
T ss_pred hh--hhcccccchhhhhhHHHHHHHHHHhcccc-hhhc-----cc--ch-------------------------------
Confidence 10 12222233333333333333333333322 1110 00 00
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
.++ .+ ++++++.. + +.+.+.
T Consensus 216 ----------------------------------------~~~--~~--------~~~~~~~~-~--~~~~~~------- 235 (447)
T d1pw4a_ 216 ----------------------------------------IEE--YK--------NDYPDDYN-E--KAEQEL------- 235 (447)
T ss_dssp ----------------------------------------CTT--TC--------CC-----------------------
T ss_pred ----------------------------------------hhh--hh--------hhcccchh-h--cccccc-------
Confidence 000 00 00000000 0 000000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSR 400 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~ 400 (541)
...+...++.++++.+|.+....++................+ ..+++ +.....++..+.+.+|++++|++.|...|
T Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 236 -TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp -CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred -chhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccc
Confidence 012234578889999999988777765544333333333333 23444 35678888899999999999988554322
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHhhcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh
Q 009176 401 SKHMIPSPASIGALMAPMAGAFMLLLNET--N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI 477 (541)
Q Consensus 401 ~~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~ 477 (541)
+ .|.............+.++..... + ....+...++|++.++......+.++|.++.+..|+..|+..+...+
T Consensus 315 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 315 G----NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390 (447)
T ss_dssp T----CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred c----ccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 1 333322222222222222222221 2 23556667889999999999999999999999999999998766555
Q ss_pred -hHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 478 -GSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 478 -Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
|..+++.+.|++.|..+ |+..|++.+++++++.++.+++.
T Consensus 391 ~g~~~~~~~~g~~~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 391 GGSVAASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999865 68899999888888888777663
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=7.8e-16 Score=152.28 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=111.6
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHH
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVT 453 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ 453 (541)
...+...+....++...|.+.|. .+|...+....++++++.+++....+ ..+++...+.|+++|..++...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 263 YVTTMGELLNASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhcc-------cccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677766655331 14555555566666666666665555 45777888999999999999999
Q ss_pred HhhhhcCCCcccchhhhh-hhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 454 TTTELFGTKNFSVNHNIV-VANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 454 ivse~FG~k~fg~nyg~~-~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
.+.|.+..++-++.+|+. .++..+|..+++.++|+++|..+ |+.+|++.+++++++.++++++.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999985 56788999999999999999875 7999999999999999999888777
Q ss_pred hhccc
Q 009176 533 TRKFY 537 (541)
Q Consensus 533 ~r~~Y 537 (541)
+|+.-
T Consensus 403 ~~~~~ 407 (417)
T d1pv7a_ 403 PGPLS 407 (417)
T ss_dssp SSCTT
T ss_pred CCccc
Confidence 76643
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.3e-07 Score=94.75 Aligned_cols=171 Identities=12% Similarity=0.020 Sum_probs=126.4
Q ss_pred HHHHHHHHHhhcccce---eecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHH
Q 009176 341 WLYFFVYFSGATLGLV---FLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALM 415 (541)
Q Consensus 341 wllf~~~~~g~g~Glm---~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~ 415 (541)
|.+++..+++....-+ .++.+.+..+++|.+ +.....|+.++...+|.+.+|.+.|.. +|...+....
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-------g~r~~~~~~~ 96 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-------NPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CchHHHHHHH
Confidence 5555555554333322 222333333456764 556788999999999999999885532 5666666666
Q ss_pred HHHHHHHHHHhhcc----c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHh
Q 009176 416 APMAGAFMLLLNET----N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVY 490 (541)
Q Consensus 416 ~~~~~~~ll~~~~~----~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iy 490 (541)
++.+++.++.+... + ..+++.-.+.|++.|..++..+++++|.|..|+-+...|+...+..+|..+++.+.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 66666655544321 2 457778889999999999999999999999999999999999999999999998899888
Q ss_pred hhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 491 HKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 491 D~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.... ++..|++.+.++++..++.+.+.
T Consensus 177 ~~~~~------------w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 177 AWFND------------WHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHTCC------------STTCTHHHHHHHHHHHHHHHHHC
T ss_pred hhhhc------------ccccchhhhhhHHHHHHHHHHhc
Confidence 87776 78889988888877766666553
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00023 Score=68.21 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=92.7
Q ss_pred hhhhchhHHHHHHHHHHhh-cccceeecchHH-HHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 333 LMLQRVDFWLYFFVYFSGA-TLGLVFLNNLGQ-IAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~-g~Glm~I~n~g~-i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
+-+|+++||.+.+.+++.. +.|. +..-+.. +.+.+|.+ +.....++..+...++.+..|.++|.. +|.
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~-~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-------grr 73 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-------GLR 73 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-------TTC
T ss_pred CcccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cch
Confidence 4589999999977766542 3332 2233343 34557876 456788899999999999999884432 222
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-----chhHHHHHHHHHhhhccchhhHHHhhhhcC--CCcccchhhhhhhhhhhhHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNETN-----VALYTSTAIIGVCSGAITSISVTTTTELFG--TKNFSVNHNIVVANIPIGSFL 481 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~~-----~~l~~~s~liG~~yG~~~~l~P~ivse~FG--~k~fg~nyg~~~~a~~~Gs~l 481 (541)
..+........++..+.....+ ....+...+.+...+...........+..- .+......+........+..+
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (417)
T d1pv7a_ 74 KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp THHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc
Confidence 2222222233333222222111 123334444444444443333333222211 122334455666667777778
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
++.++|.+++.. .+..+.+......+..++.++
T Consensus 154 ~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 154 GASIVGIMFTIN--------------NQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHHHHHHHHHHC--------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccc--------------ccccccchhhHHHHHHHHHHH
Confidence 888888888764 345555555554444444433
|