Citrus Sinensis ID: 009177

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGTGSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
ccccccHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccc
cccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEHHHHccccccccccccccccccccccccccccccccccccccc
MLVAKSNYIRKLIIEskeadltrinlsnipggpeMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCEnnlagrteDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKacyeanfpcrtppnwwteelsiIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVrdhsagngtkssdaqstnSQVRYQQRELLESIVSlmpsekaafpINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSftydgerlfDLESVRKIISGFVEKEKSMAVfsgsgdfrescscspamHRVAKTVGTYLGeiatsgelsiskfngianlvpkgsrkvddDLYRAIDIYLkahpnldeiEREKicssmdplkLSYEARVHasqnkrlpVQIVLHALYYDQLklrsgldndrstpdaAATRNQLQADVLLIKENEALRSELTRMKLYISDVqkgnnqagtgsssksgtsghkkhtffssmsktfgklnpfkhgskdtsnidddvaamdgtkprrrrfsis
mlvaksnyIRKLiieskeadltriNLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAgngtkssdaqstnsQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATsgelsiskfngianlvpkgsrkvdDDLYRAIDIYlkahpnldeieREKICSSMDPLKLSYEARVHasqnkrlpvQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQagtgsssksgtsghKKHTFFSSMSKTFGKLNPFKhgskdtsnidddvaamdgtkprrrrfsis
MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFlsqvalsslsgavvvlKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAgtgsssksgtsghkkhtFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
******NYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRD******************************LESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLR********************ADVLLIKENEALRSELTRMKLYI************************************************************************
MLVAKSNYI***************NLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEA*F*CRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRD**********************QRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFV***************************VAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALY**********************************************************************************************************************F***
MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHS*****************RYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQK*******************KHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGT**********
**VAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRD***********************RYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEK*****************SPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLD****************ADVLLIKENEALRSELTRMKLYISDVQKG******************************************************************
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MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAGTGSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query541 2.2.26 [Sep-21-2011]
Q682S0593 Root phototropism protein yes no 0.994 0.907 0.720 0.0
Q66GP0604 BTB/POZ domain-containing no no 0.918 0.822 0.381 1e-102
Q9FKB6614 BTB/POZ domain-containing no no 0.889 0.783 0.369 2e-94
Q9C9Z7617 BTB/POZ domain-containing no no 0.916 0.803 0.343 6e-86
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.911 0.847 0.346 6e-83
Q9SA69634 BTB/POZ domain-containing no no 0.903 0.771 0.327 7e-82
O82253635 BTB/POZ domain-containing no no 0.896 0.763 0.329 3e-81
Q9S9Q9665 BTB/POZ domain-containing no no 0.787 0.640 0.366 3e-78
Q9SN21526 Putative BTB/POZ domain-c no no 0.924 0.950 0.332 1e-77
Q9FNB3591 Putative BTB/POZ domain-c no no 0.767 0.702 0.373 6e-77
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/548 (72%), Positives = 463/548 (84%), Gaps = 10/548 (1%)

Query: 1   MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC 60
           MLVAKSNYIRKLI+ESK++D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL C
Sbjct: 49  MLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHC 108

Query: 61  AAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCID 120
           AAEFLQMTDKYC+NNLAGRT+DFLSQVALSSLSGA+VVLKSCE LLP++ DL IV+RC+D
Sbjct: 109 AAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVD 168

Query: 121 VATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTER 180
           V  AKAC EA FPCRTPPNWWTEEL I+D++FFS ++++MK+RG K  ++ASA+ITYTE+
Sbjct: 169 VVGAKACNEAMFPCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEK 228

Query: 181 SLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRS 240
           SLRDLVRDHS G G K SD     S  R QQR+L++SIVSL+PS+K  FP+NFLC LLR 
Sbjct: 229 SLRDLVRDHS-GRGVKYSDPGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRC 287

Query: 241 AIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEK 300
           A+FL  S +CKNELEKR+S +LEHVSVDDLL+ SFTYDGERL DL+SVR+IIS FVEKEK
Sbjct: 288 AVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEK 347

Query: 301 SMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKV 360
           ++ VF+G GDF     CS ++ RVAKTV +YL EIAT G+L+ISKFN IANLVPK +RK 
Sbjct: 348 NVGVFNG-GDFNRGV-CSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKS 405

Query: 361 DDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYY 420
           DDDLYRAIDI+LKAHPNLDEIEREK+CSSMDPLKLSY+AR+HASQNKRLPV IVLHALYY
Sbjct: 406 DDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYY 465

Query: 421 DQLKLRSGL--DNDRST---PDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKG 475
           DQLKLRSG+    +R+    P+A  TR+QLQAD  L KENEALRSEL +MK+Y+SD+QK 
Sbjct: 466 DQLKLRSGVAEQEERAVVVLPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKN 525

Query: 476 NNQAGT--GSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKP 533
            N AG    +SS   +S   KHTFFSS+SK  GKLNPFK+GSKDTS+ID+D+  +D TKP
Sbjct: 526 KNGAGASSSNSSSLVSSKKSKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGVDITKP 585

Query: 534 RRRRFSIS 541
           RRRRFSIS
Sbjct: 586 RRRRFSIS 593
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Necessary for root phototropism. Involved in hypocotyl phototropism under high rate but not under low rate light. Regulates stomata opening. Seems to be not involved in chloroplast accumulation and translocation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9SN21|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
225434311572 PREDICTED: root phototropism protein 2 [ 0.974 0.921 0.778 0.0
224126993578 predicted protein [Populus trichocarpa] 0.981 0.918 0.775 0.0
224145407575 predicted protein [Populus trichocarpa] 0.981 0.923 0.769 0.0
255586474549 Root phototropism protein, putative [Ric 0.950 0.936 0.784 0.0
449459992582 PREDICTED: root phototropism protein 2-l 0.979 0.910 0.755 0.0
302398617577 BZIP domain class transcription factor [ 0.981 0.920 0.745 0.0
302398625577 BZIP domain class transcription factor [ 0.981 0.920 0.747 0.0
302398627577 BZIP domain class transcription factor [ 0.983 0.922 0.737 0.0
297826469593 hypothetical protein ARALYDRAFT_481966 [ 0.994 0.907 0.718 0.0
30684610593 Root phototropism protein 2 [Arabidopsis 0.994 0.907 0.720 0.0
>gi|225434311|ref|XP_002264896.1| PREDICTED: root phototropism protein 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/541 (77%), Positives = 472/541 (87%), Gaps = 14/541 (2%)

Query: 1   MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC 60
           MLVAKSNYIRKLI+ESKEADLT I+LS+IPGGPE+FEKAAKFCYGVNFEITVHNVAALRC
Sbjct: 46  MLVAKSNYIRKLIMESKEADLTNIDLSDIPGGPEIFEKAAKFCYGVNFEITVHNVAALRC 105

Query: 61  AAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCID 120
           AAE+LQMTDKYC+ NL+GRTEDFL QVAL+SLSGAVVVLKSCE LLP AE+L IVQRC+D
Sbjct: 106 AAEYLQMTDKYCDGNLSGRTEDFLKQVALTSLSGAVVVLKSCEDLLPKAEELKIVQRCVD 165

Query: 121 VATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTER 180
           VA+ KAC EANFP R+PPNWWTEELSI+DI FF +IIAAMK RGAK+LT+ASALITYTER
Sbjct: 166 VASTKACNEANFPSRSPPNWWTEELSILDIGFFEKIIAAMKLRGAKSLTVASALITYTER 225

Query: 181 SLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRS 240
           +LRDLVRDH+ GNG +SSD + +N  +R +QRELLE+IV L+PSE+AA PINFLCCLLRS
Sbjct: 226 TLRDLVRDHT-GNGIRSSDTEDSN--LRSRQRELLEAIVVLLPSERAALPINFLCCLLRS 282

Query: 241 AIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEK 300
           AIFLK + +CKNELEKR+S ILEHV+VDDLLVLSFTYDGERLFDL+SVR+IISGFVEKEK
Sbjct: 283 AIFLKVAHTCKNELEKRISTILEHVTVDDLLVLSFTYDGERLFDLDSVRRIISGFVEKEK 342

Query: 301 SMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKV 360
           S+AVF+G GDF+E CS   AM RVAKTV  YLGEIA  GELSI KFNGIANLVPK +RKV
Sbjct: 343 SVAVFNG-GDFQEVCST--AMQRVAKTVDAYLGEIAAHGELSICKFNGIANLVPKDARKV 399

Query: 361 DDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYY 420
           DDDLYRAIDI+LKAHPNLDEIEREK+CS MDPLKLSYEARVHASQNKRLPVQIVLHALYY
Sbjct: 400 DDDLYRAIDIFLKAHPNLDEIEREKVCSVMDPLKLSYEARVHASQNKRLPVQIVLHALYY 459

Query: 421 DQLKLRSGLDNDRSTPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNNQAG 480
           DQLKLRSG D+     DA +TR+ LQADV L++ENEALRSEL +MK+YISD+QK ++  G
Sbjct: 460 DQLKLRSGADD---AHDAMSTRSHLQADVSLVRENEALRSELMKMKMYISDIQKNSSAGG 516

Query: 481 TGSSSKSGTSGHKKHTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKPRRRRFSI 540
                          TFFSSMSKT GKLNPF+HGSKDTSNIDD+  A+D TKPRRRRFSI
Sbjct: 517 GKGLGGGSKKP----TFFSSMSKTLGKLNPFRHGSKDTSNIDDE-TAVDVTKPRRRRFSI 571

Query: 541 S 541
           S
Sbjct: 572 S 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126993|ref|XP_002319980.1| predicted protein [Populus trichocarpa] gi|222858356|gb|EEE95903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224145407|ref|XP_002325631.1| predicted protein [Populus trichocarpa] gi|222862506|gb|EEF00013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586474|ref|XP_002533880.1| Root phototropism protein, putative [Ricinus communis] gi|223526172|gb|EEF28503.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459992|ref|XP_004147730.1| PREDICTED: root phototropism protein 2-like [Cucumis sativus] gi|449514615|ref|XP_004164428.1| PREDICTED: root phototropism protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302398617|gb|ADL36603.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302398625|gb|ADL36607.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302398627|gb|ADL36608.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|297826469|ref|XP_002881117.1| hypothetical protein ARALYDRAFT_481966 [Arabidopsis lyrata subsp. lyrata] gi|297326956|gb|EFH57376.1| hypothetical protein ARALYDRAFT_481966 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30684610|ref|NP_850147.1| Root phototropism protein 2 [Arabidopsis thaliana] gi|82581610|sp|Q682S0.2|RPT2_ARATH RecName: Full=Root phototropism protein 2; AltName: Full=BTB/POZ domain-containing protein RPT2 gi|14334780|gb|AAK59568.1| unknown protein [Arabidopsis thaliana] gi|15810641|gb|AAL07245.1| unknown protein [Arabidopsis thaliana] gi|23397072|gb|AAN31821.1| unknown protein [Arabidopsis thaliana] gi|62319969|dbj|BAD94074.1| hypothetical protein [Arabidopsis thaliana] gi|62321322|dbj|BAD94572.1| hypothetical protein [Arabidopsis thaliana] gi|62321760|dbj|BAD95385.1| hypothetical protein [Arabidopsis thaliana] gi|110739366|dbj|BAF01595.1| hypothetical protein [Arabidopsis thaliana] gi|110739529|dbj|BAF01673.1| hypothetical protein [Arabidopsis thaliana] gi|110741366|dbj|BAF02233.1| hypothetical protein [Arabidopsis thaliana] gi|330253307|gb|AEC08401.1| Root phototropism protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
TAIR|locus:2064357593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.994 0.907 0.680 1.3e-196
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.850 0.761 0.379 4.4e-90
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.942 0.830 0.357 7.3e-75
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.548 0.446 0.375 2.9e-73
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.532 0.487 0.366 4.7e-72
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.853 0.748 0.333 2.1e-70
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.894 0.831 0.330 8e-69
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.528 0.483 0.350 2.9e-68
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.510 0.413 0.372 2.9e-66
TAIR|locus:2083103526 AT3G49970 [Arabidopsis thalian 0.896 0.922 0.321 4.1e-65
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 373/548 (68%), Positives = 438/548 (79%)

Query:     1 MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC 60
             MLVAKSNYIRKLI+ESK++D+TRINLS+IPGGPE+FEKAAKFCYGVNFEITV NVAAL C
Sbjct:    49 MLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHC 108

Query:    61 AAEFLQMTDKYCENNLAGRTEDFXXXXXXXXXXXXXXXXKSCEALLPLAEDLLIVQRCID 120
             AAEFLQMTDKYC+NNLAGRT+DF                KSCE LLP++ DL IV+RC+D
Sbjct:   109 AAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVD 168

Query:   121 VATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTER 180
             V  AKAC EA FPCRTPPNWWTEEL I+D++FFS ++++MK+RG K  ++ASA+ITYTE+
Sbjct:   169 VVGAKACNEAMFPCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEK 228

Query:   181 SLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRS 240
             SLRDLVRDHS G G K SD     S  R QQR+L++SIVSL+PS+K  FP+NFLC LLR 
Sbjct:   229 SLRDLVRDHS-GRGVKYSDPGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRC 287

Query:   241 AIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEK 300
             A+FL  S +CKNELEKR+S +LEHVSVDDLL+ SFTYDGERL DL+SVR+IIS FVEKEK
Sbjct:   288 AVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEK 347

Query:   301 SMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKV 360
             ++ VF+G GDF     CS ++ RVAKTV +YL EIAT G+L+ISKFN IANLVPK +RK 
Sbjct:   348 NVGVFNG-GDFNRGV-CSVSLQRVAKTVDSYLAEIATYGDLTISKFNAIANLVPKSARKS 405

Query:   361 DDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHASQNKRLPVQIVLHALYY 420
             DDDLYRAIDI+LKAHPNLDEIEREK+CSSMDPLKLSY+AR+HASQNKRLPV IVLHALYY
Sbjct:   406 DDDLYRAIDIFLKAHPNLDEIEREKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYY 465

Query:   421 DQLKLRSGL--DNDRST---PDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKG 475
             DQLKLRSG+    +R+    P+A  TR+QLQAD  L KENEALRSEL +MK+Y+SD+QK 
Sbjct:   466 DQLKLRSGVAEQEERAVVVLPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKN 525

Query:   476 NNQAXXXXXXXXXXXXXXXX--XFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDGTKP 533
              N A                   FFSS+SK  GKLNPFK+GSKDTS+ID+D+  +D TKP
Sbjct:   526 KNGAGASSSNSSSLVSSKKSKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGVDITKP 585

Query:   534 RRRRFSIS 541
             RRRRFSIS
Sbjct:   586 RRRRFSIS 593
GO:0004871 "signal transducer activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0009416 "response to light stimulus" evidence=IEA
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0009638 "phototropism" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083103 AT3G49970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q682S0RPT2_ARATHNo assigned EC number0.72080.99440.9072yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023923001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (572 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
pfam03000249 pfam03000, NPH3, NPH3 family 4e-92
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 8e-05
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  281 bits (722), Expect = 4e-92
 Identities = 113/263 (42%), Positives = 155/263 (58%), Gaps = 14/263 (5%)

Query: 138 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKS 197
            +WW E+LS + I+ F R+I AMK RG K   I  AL+ Y ++ L  L R       + S
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLSR-------SGS 53

Query: 198 SDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKR 257
           S+  S       +QR LLE+IVSL+PSEK +   +FL  LLR+AI L AS SC+ ELE+R
Sbjct: 54  SEEDSEE-----EQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERR 108

Query: 258 VSAILEHVSVDDLLVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSC 317
           +   L+  ++DDLL+ S     E L+D++ V++I+  F+ ++      S   D   S   
Sbjct: 109 IGLQLDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDA-ATQSSDDEDSEAS-PS 166

Query: 318 SPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPN 377
           S ++ +VAK V  YL EIA    L +SKF  +A  VP  +R   D LYRAIDIYLKAHPN
Sbjct: 167 SSSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPN 226

Query: 378 LDEIEREKICSSMDPLKLSYEAR 400
           L E E++++C  MD  KLS EA 
Sbjct: 227 LSESEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 541
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.18
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.8
PHA03098534 kelch-like protein; Provisional 97.75
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.43
PHA02713557 hypothetical protein; Provisional 97.2
PHA02790480 Kelch-like protein; Provisional 96.92
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 92.26
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 82.26
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1.9e-91  Score=700.86  Aligned_cols=257  Identities=42%  Similarity=0.692  Sum_probs=226.8

Q ss_pred             CCccccccccCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHH
Q 009177          138 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLES  217 (541)
Q Consensus       138 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEt  217 (541)
                      .|||||||+.|++++|+|||.+|+++||+|++||++|++||+||||++.+.. .+....    ....+....+||.+||+
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~~----~~~~~~~~~~~r~llEt   75 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSSS----AESSTSSENEQRELLET   75 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-cccccc----ccccchhHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999985432 111111    12335667899999999


Q ss_pred             HHhhCCCCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHHHHhhhcccCcccccccccCCCC-CcccchHHHHHHHHHHH
Q 009177          218 IVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDG-ERLFDLESVRKIISGFV  296 (541)
Q Consensus       218 iv~lLP~~k~~vs~~fL~~LLr~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~-~tlyDvd~V~Ril~~Fl  296 (541)
                      ||+|||.+|+++||+|||+|||+|++++||..||.+||+|||.|||||||||||||+ ++.+ +|+||||+|+|||++||
T Consensus        76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~~t~yDVd~V~riv~~Fl  154 (258)
T PF03000_consen   76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGEDTLYDVDLVQRIVEHFL  154 (258)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcccchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 4444 49999999999999999


Q ss_pred             hhhccccccCCCCCccccCCCchhHHHHHhhhhhhhhhhcCCCCCChhHHHHHHHhcCCCCccccchHHHHHHHHHHhCC
Q 009177          297 EKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHP  376 (541)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~sKF~~LAe~lPd~AR~~~DgLYRAIDiYLKaHp  376 (541)
                      .+++..............+++..++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            98643211111111112356789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHhhhhccccCCCCCHHHH
Q 009177          377 NLDEIEREKICSSMDPLKLSYEAR  400 (541)
Q Consensus       377 ~Lse~Er~~lCr~mdcqKLS~EAc  400 (541)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-05
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-05
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-04
3b84_A119 Zinc finger and BTB domain-containing protein 48; 2e-04
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 5e-04
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 7e-04
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 66/503 (13%), Positives = 143/503 (28%), Gaps = 153/503 (30%)

Query: 46  VNFEITVHNVAALRCAAEFLQ--MTDKYCENNLAGRTEDFLSQVALSSLSGAVV--VLKS 101
           ++FE   H        + F    + +  C++      +D    +    LS   +  ++ S
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKD-----VQDMPKSI----LSKEEIDHIIMS 57

Query: 102 ---CEALLPLAEDLL-----IVQRCIDVATAKACYEANFPCRTPPNWWTEEL-------S 146
                  L L   LL     +VQ+ ++          N+       +    +       S
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-----NYK------FLMSPIKTEQRQPS 106

Query: 147 IIDIEFFS------RIIAAMKK----RGAKALTIASALITYTERSLRDLVRDHSAGNGTK 196
           ++   +               K    R    L +  AL     R  ++++ D   G+G K
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRPAKNVLIDGVLGSG-K 163

Query: 197 SSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINF---------------LCCLLRSA 241
           +  A       + Q +         M  +   F +N                L   +   
Sbjct: 164 TWVALDVCLSYKVQCK---------MDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 242 IFLKASTSCK-----NELEKRVSAIL-EHVSVDDLLVLSFTYDGE--RLFDL-------- 285
              ++  S       + ++  +  +L      + LLVL    + +    F+L        
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 286 ----------ESVRKIIS------GFVEKEKSMAVFS-----GSGDF-RESCSCSPAMHR 323
                      +    IS           E   ++          D  RE  + +P   R
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNP---R 328

Query: 324 VAKTVGTYLGE-IATSG---ELSISKFN-----GIANLVPKGSRKVDDDLYRAI---DIY 371
               +   + + +AT      ++  K        +  L P   RK+ D L  ++     +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAH 386

Query: 372 LKAH------PNLDEIEREKICSSM--------DPLKLSYEARVHASQ---NKRLPVQIV 414
           +          ++ + +   + + +         P + +    + +       +L  +  
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYA 444

Query: 415 LHALYYDQLKLRSGLDNDRSTPD 437
           LH    D   +    D+D   P 
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPP 467
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 98.66
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 98.6
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.43
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.37
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.33
2vpk_A116 Myoneurin; transcription regulation, transcription 98.31
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.31
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.29
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.29
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.28
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.24
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.22
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.19
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 98.19
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.18
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.13
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.94
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.88
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.82
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.79
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 96.38
4ajy_C97 Transcription elongation factor B polypeptide 1; E 96.28
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 94.36
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 93.17
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 88.21
2fnj_C96 Transcription elongation factor B polypeptide 1; b 84.75
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 82.26
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=98.66  E-value=2.3e-08  Score=99.09  Aligned_cols=201  Identities=13%  Similarity=0.234  Sum_probs=135.2

Q ss_pred             CcccchHHHHHHhhc-ccCCcceeeccCC----CCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCch
Q 009177            2 LVAKSNYIRKLIIES-KEADLTRINLSNI----PGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNL   76 (541)
Q Consensus         2 L~srSg~l~kli~~~-~~~~~~~i~L~d~----PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NL   76 (541)
                      |.++|.|++.++... .++...+|.|+++    .-.+++|+.+.+|+|+.++++++.||..|..||.+|+|++      |
T Consensus        54 Laa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L  127 (279)
T 3i3n_A           54 LAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------L  127 (279)
T ss_dssp             HHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------H
T ss_pred             HHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------H
Confidence            567899999998753 3444567889876    4578999999999999999999999999999999999986      8


Q ss_pred             hHHHHHHhhhhhccChhHHHHHHHhhhhcccchhhhh---hHHHHHHHHHHHHccccCCCCCCCCCccccccccCChhHH
Q 009177           77 AGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL---IVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFF  153 (541)
Q Consensus        77 i~ktE~fL~~vvl~sW~dsi~vLksce~llp~AE~l~---Iv~RCidsla~kac~~~~~~~~~~~dWW~eDl~~L~~~~f  153 (541)
                      ....+.||.+.+-.  .       +|-.++.+|+..+   +.++|.+-|+.....=          +-.++...|+.+..
T Consensus       128 ~~~c~~~L~~~l~~--~-------n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v----------~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          128 KEFCGEFLKKKLHL--S-------NCVAIHSLAHMYTLSQLALKAADMIRRNFHKV----------IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHHHCCT--T-------THHHHHHHHHHTTCHHHHHHHHHHHHHTHHHH----------TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHHHcCCc--c-------hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH----------hcCcChhcCCHHHH
Confidence            99999999885422  2       3444455565544   6778888776543110          12356678888877


Q ss_pred             HHHHHHHHHcCC-ChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhCCCCC-CCcch
Q 009177          154 SRIIAAMKKRGA-KALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEK-AAFPI  231 (541)
Q Consensus       154 ~rvi~am~~~g~-~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~lLP~~k-~~vs~  231 (541)
                      ..++..=. -.+ +.+.|-.+++.|++.-.+                          +.+..+..+   |..=| ..+|.
T Consensus       189 ~~lL~~d~-L~v~sE~~vf~av~~W~~~~~~--------------------------~r~~~~~~l---l~~VRf~l~~~  238 (279)
T 3i3n_A          189 RDWLSDLE-ITVDSEEVLFETVLKWVQRNAE--------------------------ERERYFEEL---FKLLRLSQMKP  238 (279)
T ss_dssp             HHHHTCSS-CCCSCHHHHHHHHHHHHHTTHH--------------------------HHTTTHHHH---HTTSCGGGSCH
T ss_pred             HHHhcCcC-CCCCCHHHHHHHHHHHHHcCHH--------------------------HHHHHHHHH---HHhcCCCCCCH
Confidence            77654311 123 355666666655432111                          111222333   33322 56889


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHH
Q 009177          232 NFLCCLLRSAIFLKASTSCKNELEKR  257 (541)
Q Consensus       232 ~fL~~LLr~A~~l~as~~cr~~LE~r  257 (541)
                      .+|..+++..-.+..++.|+.-|..-
T Consensus       239 ~~L~~~v~~~~l~~~~~~c~~~l~ea  264 (279)
T 3i3n_A          239 TYLTRHVKPERLVANNEVCVKLVADA  264 (279)
T ss_dssp             HHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhhccchhcCCHHHHHHHHHH
Confidence            99999998888888999998877653
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 541
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 1e-04
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 3e-04
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 1   MLVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALR 59
           +L+A S     +  +  K           I   PE F     F Y     +   N+ A+ 
Sbjct: 43  VLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGNIMAVM 100

Query: 60  CAAEFLQMTD--KYCENNL 76
             A +LQM      C   +
Sbjct: 101 ATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.42
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.37
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 83.51
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.1e-07  Score=82.06  Aligned_cols=74  Identities=19%  Similarity=0.353  Sum_probs=65.8

Q ss_pred             CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177            2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE   81 (541)
Q Consensus         2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE   81 (541)
                      |.++|.+++.++.+.    ..+|.+++++  +++|+.+.+|+|..++++++.||..+..||++|+|.+      |...++
T Consensus        47 Laa~S~~F~~lf~~~----~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~  114 (121)
T d1buoa_          47 LACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCL  114 (121)
T ss_dssp             HHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHH
T ss_pred             hcccChhhhhhccCc----cceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence            678999999999643    3468888875  8999999999999999999999999999999999987      899999


Q ss_pred             HHhhhh
Q 009177           82 DFLSQV   87 (541)
Q Consensus        82 ~fL~~v   87 (541)
                      .||..+
T Consensus       115 ~~L~~i  120 (121)
T d1buoa_         115 KMLETI  120 (121)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999764
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure