Citrus Sinensis ID: 009204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MGLIFGPSIQNSVQIIVPYALSQKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDDYNHIV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcHHHHHHEEEEEccccccccccccccccccccHccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccccHcHHccccccccccccccHHHHHHHccccccccccccccccHHHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccEEEccccHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHccccHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mglifgpsiqnsVQIIVPyalsqkpasfmssasfttrnesnphrtfrlknwgfgscvsrgnsikrscSANFNEFLDDEFAKQAEELARRLDImddhvdnhdhdqnnketAYAVRDVNmgfsmqfmlpkyellehnllgirpepvdwpereEIVRVNIEQRANCVGIPLSLRMIKRKQKWkegfgdaedfaYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTvhsmsnnvgfaaslspgssetITETISltgekdqetseiDSSTMKNLLLSISdigndgdgkkvsrissgnadkrfsrsspsiqypsfipyemsevssgkqfpmnkeeLDLWNSVLDEALRIQEESEYRildhetmqhfvtpvtvklepddymdYFRTDLLYQmgvaeepnnpllLLNYAQFLHLVTKDYDRAEECFKRaiqsdppdaeALSQYADFLWLVRKDLWAAEETYQQAmaaepnsssyaSKYASFLwntggeetcfplsssqddynhiv
Flexible Loop (DISEMBL)
mglifgpsiqNSVQIIVPYALSQKPASFMSSASfttrnesnphrtfrlknwgfgsCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDhvdnhdhdqnnkETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNieqrancvgiplslrMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAaslspgssETITETIsltgekdqetseiDSSTMKNLLLSIsdigndgdgkkvsrissgnadkrfsrsspsiqypsFIPYEMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESEyrildhetmqhfvtpvtvklepdDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAiqsdppdaEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETcfplsssqddynhiv
Low Complexity Region (SEG)
MGLIFGPSIQNSVQIIVPYALSQKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMddhvdnhdhdqnnKETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGssetitetisLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEpnnpllllnYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDDYNHIV
Disordered region (IsUnstruct)
***IFGPSIQNSVQIIVPYAL***********************TFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFA****************************TAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFA************************************************************************************************LDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ******EALSQYADFLWLVRKDLWAAEETYQ************ASKYASFLWNTGGEETCF*************
Disordered Region (DISOPRED)
*GLIFGPSIQNSVQIIVPYALSQK**********************************************FNEFLDDEFAKQAEELA********************************************************VDWPEREEIVR*NIEQR*NCVGIPLSLRMIKR*************FAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSN******************************************************************************************************DLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQD******
Disordered Region (DISEMBL)
MGLIFGPSIQNSVQIIVPYALSQKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAAS********ITETISL*************STMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA*********YASKYASFLWNTGGEETCFPLSSS********
Disordered Region (DISPRO)
MGLIFGPSIQNSVQIIVPYALSQKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVS*GNSIKRSCSANFNEFLDDEFAKQAEELARRLDIM******************************FMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASL*****************************************************************************************NKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIFGPSIQNSVQIIVPYALSQKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDDYNHIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
224109354	523	predicted protein [Populus trichocarpa]	0.848	0.875	0.542	1e-140
224104295	575	predicted protein [Populus trichocarpa]	0.874	0.820	0.506	1e-123
224054554	545	predicted protein [Populus trichocarpa]	0.816	0.809	0.490	1e-123
225434642	527	PREDICTED: uncharacterized protein LOC10	0.805	0.825	0.478	1e-122
255571855	502	conserved hypothetical protein [Ricinus	0.783	0.842	0.518	1e-121
359486514	523	PREDICTED: uncharacterized protein LOC10	0.898	0.927	0.456	1e-120
147862426	590	hypothetical protein VITISV_017357 [Viti	0.894	0.818	0.459	1e-119
297745926	469	unnamed protein product [Vitis vinifera]	0.711	0.818	0.471	1e-114
449518503	546	PREDICTED: uncharacterized protein LOC10	0.840	0.831	0.446	1e-108
449467475	546	PREDICTED: uncharacterized protein LOC10	0.840	0.831	0.446	1e-108

>gi|224109354|ref|XP_002315169.1| predicted protein [Populus trichocarpa] gi|222864209|gb|EEF01340.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/498 (54%), Positives = 339/498 (68%), Gaps = 40/498 (8%)

Query: 53  FGSCVS-RGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAY 111
           FGS  + +G  +KRSCS + +EF ++E     E LAR  D++DD  D +DH+    +TAY
Sbjct: 49  FGSSRNLKGPGLKRSCSDSLDEFYNEEI----EYLARSYDVVDD--DENDHN----DTAY 98

Query: 112 AVRDV-------------NMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIE 158
           AV D              N   S  F+  K E LE +LLGI+PEP DWP R EIVR++IE
Sbjct: 99  AVSDSSNISKSNDGESSKNRNSSDSFLPSKIEFLEPSLLGIQPEPPDWPGRNEIVRMSIE 158

Query: 159 QRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREG 218
            RAN V IPLSLRM+KRK KW++GF    + AYCSV +AF+S+V II+ELQ+ AL+ R  
Sbjct: 159 LRANSVDIPLSLRMLKRKLKWQKGFAVVRNSAYCSVKRAFASMVLIIQELQSHALYTRGS 218

Query: 219 LYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAAS 278
           L+ EDL+ I+ K+  E+N+SFVWLFQQVFSRTPTLMVYVM+LLANFTVHSM  N+G  A+
Sbjct: 219 LHGEDLRRILEKVHSELNASFVWLFQQVFSRTPTLMVYVMLLLANFTVHSMFGNIGVTAA 278

Query: 279 LSPGSSETITETISLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGN--A 336
             P       ETI+   E DQE S  D +   N          +G   KV R   G+   
Sbjct: 279 PLP---RIFQETITTPDEMDQEQSNADHAVGNN----------NGGAGKVDRSIGGSEGG 325

Query: 337 DKRFSRSSPSIQYPSFIPYEMSEVS-SGKQFPMNKEELDLWNSVLDEALRIQEESEYRIL 395
           D  F R SP I+YP+ +P E  EVS  G Q  ++ EE  LWN++++EA R+Q ES Y +L
Sbjct: 326 DWHFGRISPFIRYPNLVPEETGEVSLPGNQEMVSVEEAVLWNAMVEEASRMQVESGYEVL 385

Query: 396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYD 455
           D ETM+ FV+ VTV LEP DY++Y+RTDLLYQM +AE+P NPLLL NYAQFL +V  DYD
Sbjct: 386 DRETMKQFVSRVTVDLEPSDYVEYYRTDLLYQMAIAEDPKNPLLLSNYAQFLCIVRHDYD 445

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
           RAE+CFKRAI   PPDAEA S YADFLW VR DLW+AEE Y QA++ EPN++ +ASKYAS
Sbjct: 446 RAEKCFKRAIMVGPPDAEAFSHYADFLWRVRMDLWSAEERYLQALSIEPNNTEHASKYAS 505

Query: 516 FLWNTGGEETCFPLSSSQ 533
           FLW+TGGEETCFPL++ Q
Sbjct: 506 FLWSTGGEETCFPLNAPQ 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104295|ref|XP_002313386.1| predicted protein [Populus trichocarpa] gi|222849794|gb|EEE87341.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/503 (50%), Positives = 341/503 (67%), Gaps = 31/503 (6%)

Query: 58  SRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDVN 117
           SRG +IKR+ SA+ + F D+EF+K+ +ELA R  + DD  D  D   +  E      D N
Sbjct: 83  SRGQTIKRASSASLDAFSDEEFSKKIQELALRFQLSDDDDDGSDAVDSESEILSDSGD-N 141

Query: 118 MGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQ 177
           +G   Q   P  + +E     IR EP DW  R++I+  +IE++AN V +PLSLRMI+RK 
Sbjct: 142 LGMHDQRQFP-LDSMEPPWPEIRQEPPDWSGRDDIIPASIERKANSVDLPLSLRMIRRKM 200

Query: 178 KWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNS 237
           +W+EGF +A + AYCSV KAF S+VFIIREL A +L +RE L+ EDL+ I++++Q+EM++
Sbjct: 201 QWQEGFREAGESAYCSVKKAFCSMVFIIRELHAYSLQMREFLFTEDLQGILARVQKEMHA 260

Query: 238 SFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGEK 297
           SFVWLFQQVFS TPTLMVYVMILLANFTVHSM+NN   AA  + GS    TE+IS+    
Sbjct: 261 SFVWLFQQVFSHTPTLMVYVMILLANFTVHSMANNAALAAPPNSGSYAATTESISVVETP 320

Query: 298 DQETSEIDSSTMKNLLLSISDIGNDG------DGKKVSRISSGN-ADKRFSRSSPSIQYP 350
           DQ+  + DSS++K   +S S             G KV  ++SG   D  F +S+   Q  
Sbjct: 321 DQKNQKFDSSSVKMFSVSSSSGKTTSIGGNNGGGGKVRPLASGTEGDGWFDQSN---QIR 377

Query: 351 SFIPYEMSEVSS---------GKQFPMNKEELDLWNSVLDEALRIQ-----EESEYRILD 396
           + +P   S++SS           +    +EEL LWNS+++EA ++Q     +ES    LD
Sbjct: 378 TIVPDGASQLSSLGTSREAESASEQVSREEELSLWNSIVEEASKMQYFPLRDES----LD 433

Query: 397 HETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDR 456
           HET+Q FV+P+  K+E DDY +YFRTDL YQMG++++PNNPLLL NYAQFL++V  DYDR
Sbjct: 434 HETIQRFVSPINAKIEADDYAEYFRTDLQYQMGLSQDPNNPLLLANYAQFLNMVFHDYDR 493

Query: 457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASF 516
           AEE FKRAI ++PPDAEA S+YA FLW VRKDLWAAEET+ +A++A+P +S YA+ YA F
Sbjct: 494 AEEYFKRAIGAEPPDAEAYSKYASFLWHVRKDLWAAEETFLEAISADPTNSYYAANYAHF 553

Query: 517 LWNTGGEETCFPLSSSQDDYNHI 539
           LWNTGGE+TCFPL SSQD+   +
Sbjct: 554 LWNTGGEDTCFPL-SSQDNAQEV 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054554|ref|XP_002298318.1| predicted protein [Populus trichocarpa] gi|222845576|gb|EEE83123.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/497 (49%), Positives = 328/497 (65%), Gaps = 56/497 (11%)

Query: 55  SCVS---RGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAY 111
           SC S   RG +  R+ SA+ + F D+EF+K+ ++LARR  + DD  D             
Sbjct: 78  SCESQKPRGQTTIRASSASLDAFSDEEFSKKIQDLARRFRLSDDDDD------------- 124

Query: 112 AVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLR 171
                    S++   P+          IR EP DW  R++I+  +IE++AN V IPLSLR
Sbjct: 125 ---------SVKPQWPE----------IRQEPPDWSGRDDIIPASIERKANSVDIPLSLR 165

Query: 172 MIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKM 231
           MIKRK +W+EGF +A + AYCSV  AFSS+VFIIREL + +L +RE L+ EDL+ I++++
Sbjct: 166 MIKRKMQWQEGFREAGESAYCSVKAAFSSMVFIIRELHSHSLQMREFLFTEDLQGILARV 225

Query: 232 QREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETI 291
           Q+EM++SFVWLFQQVFS TPTLMVYVMILLANFTVHSM+NN   AA  + GS    TE++
Sbjct: 226 QQEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMANNTAIAAPPNTGSYAATTESV 285

Query: 292 SLTGEKDQETSEIDSSTMKNLLL------SISDIGNDGDGKKVSRISSGN-ADKRFSRSS 344
           S+    DQ+  +  SS++K   +      + S  GN+G G KV  ++SG   D  F +SS
Sbjct: 286 SVVENLDQKNQKFYSSSVKTFSVPSSSGKTTSIGGNNGGGGKVRPVASGTEGDGWFDQSS 345

Query: 345 PSIQYPSFIPYEMSEVSS----------GKQFPMNKEELDLWNSVLDEALRIQEESEYRI 394
              Q+ + +P   S++SS           +Q     EEL LWNS++DEA ++Q       
Sbjct: 346 ---QFRTIVPDGASQLSSLGTSREAESVSEQVS-GAEELSLWNSIVDEASKMQSSLRDVS 401

Query: 395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDY 454
           LDHET   FV+P++ K+E DDY DYFRTDLLYQ G++++PNNPLLL NYAQFL++V  DY
Sbjct: 402 LDHETTHRFVSPISAKIEADDYEDYFRTDLLYQTGLSQDPNNPLLLANYAQFLYIVAHDY 461

Query: 455 DRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYA 514
           DRAE+ FKRAI  +PPD EA S+YA FLW V++DLWAAEET+ +A++A+P +S YA+ YA
Sbjct: 462 DRAEDYFKRAIGVEPPDGEAYSKYASFLWHVKRDLWAAEETFLEAISADPTNSYYAANYA 521

Query: 515 SFLWNTGGEETCFPLSS 531
            FLWNTGGE+TCFPL S
Sbjct: 522 HFLWNTGGEDTCFPLGS 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434642|ref|XP_002279786.1| PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/497 (47%), Positives = 316/497 (63%), Gaps = 62/497 (12%)

Query: 53  FGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYA 112
           F S   R + IKR+CSA  +   D+EF+K+ EELA R  + D+       D+N       
Sbjct: 74  FESPKPRAHKIKRACSAGLDSLSDEEFSKRIEELALRFQVSDE-------DEN------- 119

Query: 113 VRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRM 172
                                         P DWP R+EIV  NIE++AN V +PLSLR+
Sbjct: 120 ------------------------------PPDWPGRDEIVPANIERKANSVDLPLSLRI 149

Query: 173 IKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQ 232
           IKRK++W+EGF +A + AYCSV KAFSS+VFIIREL +  L +RE L  +DL+ I+ ++Q
Sbjct: 150 IKRKKQWQEGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREVLLYQDLQGILDRVQ 209

Query: 233 REMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETIS 292
           +EM++SFVWLFQQVFS TPTLMVYVMILLANFTV+S++NN   AAS  P       E++ 
Sbjct: 210 QEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVYSIANNTAIAASPPPSPHAATIESVL 269

Query: 293 LTGEKDQETSEIDSSTMKNLLLSISDIGNDG------DGKKVSRISSG-NADKRFSRSSP 345
           ++  +  +  + DSS +K   +S ++            G KV   +SG + D RF RS  
Sbjct: 270 VSDSQQDKQQKFDSSIIKKFSVSSTNGKTTSIGNNGGGGGKVRPAASGTDGDGRFDRSE- 328

Query: 346 SIQYPSFIPYEMSEVSSGKQFP--------MNKEELDLWNSVLDEALRIQEESEYRILDH 397
              + + +P  +S++S G              +EE+  WNS++DEA ++Q       LDH
Sbjct: 329 --FHQTILPDGVSQISIGTTRESESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDH 386

Query: 398 ETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRA 457
           ETMQ FV+PV  K+E DDY DYFR +LLYQMG+A EPNNPLLL NYAQFL+LV  DYDRA
Sbjct: 387 ETMQRFVSPVEAKIEADDYADYFRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDRA 446

Query: 458 EECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFL 517
           EE FKRAI  +PPDAEA ++YA FLW+ +KDLWAAEETY +A+AA+P+++ YA+ YA FL
Sbjct: 447 EEYFKRAIAVEPPDAEAYNKYASFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAHFL 506

Query: 518 WNTGGEETCFPLSSSQD 534
           W+TGG++TCFPLS S D
Sbjct: 507 WSTGGDDTCFPLSPSDD 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571855|ref|XP_002526870.1| conserved hypothetical protein [Ricinus communis] gi|223533769|gb|EEF35501.1| conserved hypothetical protein [Ricinus communis]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/498 (51%), Positives = 327/498 (65%), Gaps = 75/498 (15%)

Query: 53  FGSCVS-RGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAY 111
           FGSC + + + +KRSCSA+ N + D+EF +Q E+LA++ D+ D     H  D ++ + AY
Sbjct: 55  FGSCGNLKTSGLKRSCSADSNAYFDEEFLRQIEDLAQKFDVFD-----HRKDMSDNDAAY 109

Query: 112 AVRDV--------------NMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNI 157
           +V  +              +   SM F+  K E LE + LGI PEP +WPEREEIV+++I
Sbjct: 110 SVSKIENDIKNITKNREKTDSAMSMSFLPSKLESLEPSFLGIVPEPPEWPEREEIVKMSI 169

Query: 158 EQRANCVGIPLSLRMIKRKQKWKEGFGDAE-DFAYCSVNKAFSSLVFIIRELQACALHIR 216
           +++AN V IPLSLRMI+RKQK +EGF DA  DF YCSVNKAFSS+VF+IRE+Q  AL IR
Sbjct: 170 QRKANSVDIPLSLRMIRRKQKCREGFVDAAGDFEYCSVNKAFSSMVFMIREIQNHALSIR 229

Query: 217 EGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFA 276
            GLY EDL+ +++K Q+EMN+SFVWLFQQVFSRTP LMVYVM+LLANFTVHSM  N    
Sbjct: 230 GGLYSEDLQAVVNKFQKEMNASFVWLFQQVFSRTPNLMVYVMLLLANFTVHSMVGN---- 285

Query: 277 ASLSPGSSETI-TETISLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGN 335
             L+ G SE I   +I +     +E +                                 
Sbjct: 286 --LTTGPSERICCRSIPVNKMTTEELNR-------------------------------- 311

Query: 336 ADKRFSRSSPSIQYPSFIPYEMSEVSSGKQ-FPMNKEELDLWNSVLDEALRIQ-EESEYR 393
                   S SIQY S         S G Q     +EE++LWN V+ EA  +Q EES Y 
Sbjct: 312 ------EHSTSIQYTSV-------GSPGYQEMTEEEEEMELWNMVVKEAALLQEEESRYP 358

Query: 394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD 453
           +LD ETM+ FV+P++V++EPDDY ++ RTD+LYQMGVAE+P+N LLL NYAQFL+ V +D
Sbjct: 359 VLDQETMKQFVSPISVEIEPDDYAEFHRTDILYQMGVAEDPDNTLLLSNYAQFLYKVCRD 418

Query: 454 YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY 513
           YDRAEECFKRAI S PPDAE  S+YADFLWLVRKDLW AEE YQQA+ A P++  Y SKY
Sbjct: 419 YDRAEECFKRAIMSGPPDAETFSRYADFLWLVRKDLWNAEEVYQQALEAAPDNHYYLSKY 478

Query: 514 ASFLWNTGGEETCFPLSS 531
           A FLW+TGGE+TCFPLSS
Sbjct: 479 AKFLWSTGGEDTCFPLSS 496

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486514|ref|XP_002271028.2| PREDICTED: uncharacterized protein LOC100255315 [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/523 (45%), Positives = 330/523 (63%), Gaps = 38/523 (7%)

Query: 18  PYALS--QKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFL 75
           PY++S  QK  S +    FT    ++     RL        +S+G +I R+C A  ++F 
Sbjct: 31  PYSISSSQKLGSTVCLYPFTRLKINDGAVARRLT-------LSKGCAIIRACCAKLDQFS 83

Query: 76  DDEF-----AKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQFMLPKYE 130
           DD F                + +    +N  +++++  ++      NMGFS  F   K +
Sbjct: 84  DDGFFPRLDDHDDYRDNDHKNAVSKIFENSKYNEDDDGSS------NMGFSASFSFSKLD 137

Query: 131 LLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFA 190
            L  + L I PEP +WP R+EI++ +IE++A    IP+SLRMIKRKQ+W+EG    ED  
Sbjct: 138 SLRPSWLEIWPEPPNWPGRDEIIQASIERKAVRFDIPVSLRMIKRKQQWEEGVTKGEDSV 197

Query: 191 YCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRT 250
           YCSV KAFSS+VFIIRELQ+ +L I+E LYCEDL+ I+S++ RE+++SFVWLFQQVFS+T
Sbjct: 198 YCSVKKAFSSMVFIIRELQSYSLQIKEILYCEDLQGILSRVHRELHASFVWLFQQVFSKT 257

Query: 251 PTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGEKDQETSEIDSSTMK 310
           PTLMVY+MILLANFTV+S+ ++   A +  P +S  ITET S+T  ++Q     +S    
Sbjct: 258 PTLMVYLMILLANFTVYSLMDDTENAETSIPPTSCMITETFSVTERENQPQPNFESLIFL 317

Query: 311 NLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNK 370
                           K S ++S N   + S S+  +  P  +   +     G +   + 
Sbjct: 318 ----------------KTSSVTSPNEVVKTSISTRPL--PMTLCSNVVADEYGSEELTHM 359

Query: 371 EELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGV 430
           EE++LWNSV++EA R+  ES    LDHET+Q  V+PV V+LE DDY++YFRTDLLYQ+ +
Sbjct: 360 EEVNLWNSVVEEASRMAAESGAEALDHETIQRMVSPVGVELEADDYIEYFRTDLLYQIRI 419

Query: 431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW 490
           +E+PNNPLL  NY QFL L  +D DRAEECFKRA++ +P D EAL+QYA+FLW+VRKDLW
Sbjct: 420 SEDPNNPLLFCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALNQYANFLWMVRKDLW 479

Query: 491 AAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQ 533
            AEE + QAMAAEP +  + S YA+FLWNTGG +TCFPL  SQ
Sbjct: 480 GAEERFLQAMAAEPGNPYHVSNYATFLWNTGGGDTCFPLQPSQ 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862426|emb|CAN79749.1| hypothetical protein VITISV_017357 [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/529 (45%), Positives = 333/529 (62%), Gaps = 46/529 (8%)

Query: 16  IVPYALS--QKPASFMSSASFTTRNESNPHRTFRLKNWGFGSCVSRGNSIKRSCSANFNE 73
             PY++S  QK  S +    FT    ++     RL        +S+G +I R+C A  ++
Sbjct: 96  FAPYSISSSQKLGSTVCLYPFTRLKINDGAVARRLT-------LSKGCAIIRACCAKLDQ 148

Query: 74  FLDDEFAKQAEELARRL---------DIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQF 124
           F DD F  + ++               I ++   N D D ++          NMGFS  F
Sbjct: 149 FSDDGFFPRLDDHDDYRDDDHKNAVSKIFENSRYNEDDDGSS----------NMGFSASF 198

Query: 125 MLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFG 184
              K + L  + L I PEP +W  R+EI++ +IE++A    IP+SLRMIKRKQ+W+EG  
Sbjct: 199 SSSKLDSLRPSWLEIWPEPPNWAGRDEIIQASIERKAVRFDIPVSLRMIKRKQQWEEGVT 258

Query: 185 DAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQ 244
             ED  YCSV KAFSS+VFIIRELQ+ +L I+E LYCEDL+ I+S++ RE+++SFVWLFQ
Sbjct: 259 KGEDSVYCSVKKAFSSMVFIIRELQSYSLQIKEILYCEDLQGILSRVHRELHASFVWLFQ 318

Query: 245 QVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGEKDQETSEI 304
           QVFS+TPTLMVY+MILLANFTV+S+ ++   A +  P +S  ITET S+T  ++Q     
Sbjct: 319 QVFSKTPTLMVYLMILLANFTVYSLMDDTENAETSIPPTSCMITETFSVTERENQPQPNF 378

Query: 305 DSSTMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGK 364
           +S      L+ +          K S ++S N   + S S+  +  P  +   +     G 
Sbjct: 379 ES------LIFL----------KTSSVTSPNEVVKTSISTRPL--PMTLCSNVVADEYGS 420

Query: 365 QFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDL 424
           +   + EE++LWNSV++EA R+  ES    LDHET+Q  V+PV V+LE DDY++YFRTDL
Sbjct: 421 EELTHMEEVNLWNSVVEEASRMAAESGAEALDHETIQRMVSPVGVELEADDYIEYFRTDL 480

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           LYQ+ ++E+PNNPLLL NY QFL L  +D DRAEECFKRA++ +P D EAL+QYA+FLW+
Sbjct: 481 LYQIRISEDPNNPLLLCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALNQYANFLWM 540

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQ 533
           VRKDLW AEE + QAMAAEP +  + S YA+FLWNTGG +TCFPL  SQ
Sbjct: 541 VRKDLWGAEERFLQAMAAEPGNPYHVSNYATFLWNTGGGDTCFPLQPSQ 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745926|emb|CBI15982.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/490 (47%), Positives = 295/490 (60%), Gaps = 106/490 (21%)

Query: 53  FGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYA 112
           F S   R + IKR+CSA  +   D+EF+K+ EELA R  + D+       D+N       
Sbjct: 74  FESPKPRAHKIKRACSAGLDSLSDEEFSKRIEELALRFQVSDE-------DEN------- 119

Query: 113 VRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRM 172
                                         P DWP R+EIV  NIE++AN V +PLSLR+
Sbjct: 120 ------------------------------PPDWPGRDEIVPANIERKANSVDLPLSLRI 149

Query: 173 IKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQ 232
           IKRK++W+EGF +A + AYCSV KAFSS+VFIIREL +  L +REG        I+ ++Q
Sbjct: 150 IKRKKQWQEGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREG--------ILDRVQ 201

Query: 233 REMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETIS 292
           +EM++SFVWLFQQVFS TPTLMVYVMILLANFTV+S++NN   AAS  P           
Sbjct: 202 QEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVYSIANNTAIAASPPPSP--------- 252

Query: 293 LTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSF 352
                    + ID              G DGDG             RF RS     + + 
Sbjct: 253 -------HAATID--------------GTDGDG-------------RFDRSE---FHQTI 275

Query: 353 IPYEMSEVSSGKQFP--------MNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFV 404
           +P  +S++S G              +EE+  WNS++DEA ++Q       LDHETMQ FV
Sbjct: 276 LPDGVSQISIGTTRESESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDHETMQRFV 335

Query: 405 TPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA 464
           +PV  K+E DDY DYFR +LLYQMG+A EPNNPLLL NYAQFL+LV  DYDRAEE FKRA
Sbjct: 336 SPVEAKIEADDYADYFRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDRAEEYFKRA 395

Query: 465 IQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
           I  +PPDAEA ++YA FLW+ +KDLWAAEETY +A+AA+P+++ YA+ YA FLW+TGG++
Sbjct: 396 IAVEPPDAEAYNKYASFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAHFLWSTGGDD 455

Query: 525 TCFPLSSSQD 534
           TCFPLS S D
Sbjct: 456 TCFPLSPSDD 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518503|ref|XP_004166281.1| PREDICTED: uncharacterized protein LOC101223894 [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/491 (44%), Positives = 312/491 (63%), Gaps = 37/491 (7%)

Query: 57  VSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDV 116
            SRG  IKR+CSA+ + F D+EF+++ +ELA R     D  +      +N  +      V
Sbjct: 78  TSRG--IKRTCSASLDAFSDEEFSRRIQELALRFQHSADADETAGSSSSNDASC-----V 130

Query: 117 NMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRK 176
           N     +F+ P +    H       EP DWP  +E+V   IE+RAN   +P+SLRMIK+K
Sbjct: 131 NSDSLSEFVEPSWPETGH-------EPPDWPRPDELVPAMIERRANSFDLPVSLRMIKKK 183

Query: 177 QKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMN 236
            +W+E   ++ + ++CSV KAFSS+VF+IREL +  L +RE LY EDL+ I+ ++Q+E  
Sbjct: 184 LQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSILVRVQKESQ 243

Query: 237 SSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGE 296
           +SFVWLFQQVFS TPTLM+ +MILLANFTV+SM NN   A++  P ++      +S+   
Sbjct: 244 ASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAA-----MVSVVES 298

Query: 297 KDQETSEIDSSTMKNLLLSISDIGNDG------DGKKVSRISSG-NADKRFSRSSPSIQY 349
            DQ  S+ DS+T+K   +S S             G KV  I  G   D +F++S    +Y
Sbjct: 299 HDQCNSKFDSTTIKTFSISSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQSD---EY 355

Query: 350 PSFIPYEMSEVSSGKQFP-----MNKEE--LDLWNSVLDEALRIQEESEYRILDHETMQH 402
            + +P   S+VSS    P     +N+EE   +LW SV++EA ++++  +  ++D +  + 
Sbjct: 356 RTILPDNASQVSSYGTTPETESVLNREEEETNLWKSVVEEASKMRQWGD-EVMDGDAFRD 414

Query: 403 FVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFK 462
            ++PVT  +E DDY +Y RT+LLYQ  + +EPNN LLL NYAQFL+LV  DYDRAEE FK
Sbjct: 415 LISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDRAEEYFK 474

Query: 463 RAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG 522
           RA+  +PP+AEA  +YA FLW VRKDLWAAEET+ +A++A+P +S YA+ YA FLWNTGG
Sbjct: 475 RAVAVEPPEAEAFDKYAAFLWQVRKDLWAAEETFLEAISADPGNSYYAANYAHFLWNTGG 534

Query: 523 EETCFPLSSSQ 533
           ++TCFPL S +
Sbjct: 535 DDTCFPLDSPE 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467475|ref|XP_004151448.1| PREDICTED: uncharacterized protein LOC101203517 [Cucumis sativus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/491 (44%), Positives = 312/491 (63%), Gaps = 37/491 (7%)

Query: 57  VSRGNSIKRSCSANFNEFLDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYAVRDV 116
            SRG  IKR+CSA+ + F D+EF+++ +ELA R     D  +      +N  +      V
Sbjct: 78  TSRG--IKRTCSASLDAFSDEEFSRRIQELALRFQHSADADETAGSSSSNDASC-----V 130

Query: 117 NMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRK 176
           N     +F+ P +    H       EP DWP  +E+V   IE+RAN   +P+SLRMIK+K
Sbjct: 131 NSDSLSEFVEPSWPETGH-------EPPDWPRPDELVPAMIERRANSFDLPVSLRMIKKK 183

Query: 177 QKWKEGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMN 236
            +W+E   ++ + ++CSV KAFSS+VF+IREL +  L +RE LY EDL+ I+ ++Q+E  
Sbjct: 184 LQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSILVRVQKESQ 243

Query: 237 SSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGSSETITETISLTGE 296
           +SFVWLFQQVFS TPTLM+ +MILLANFTV+SM NN   A++  P ++      +S+   
Sbjct: 244 ASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAA-----MVSVVES 298

Query: 297 KDQETSEIDSSTMKNLLLSISDIGNDG------DGKKVSRISSG-NADKRFSRSSPSIQY 349
            DQ  S+ DS+T+K   +S S             G KV  I  G   D +F++S    +Y
Sbjct: 299 HDQCNSKFDSTTIKTFSISSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQSD---EY 355

Query: 350 PSFIPYEMSEVSSGKQFP-----MNKEE--LDLWNSVLDEALRIQEESEYRILDHETMQH 402
            + +P   S+VSS    P     +N+EE   +LW SV++EA ++++  +  ++D +  + 
Sbjct: 356 RTILPDNASQVSSYGTTPEAESVLNREEEETNLWKSVVEEASKMRQWGD-EVMDGDAFRD 414

Query: 403 FVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFK 462
            ++PVT  +E DDY +Y RT+LLYQ  + +EPNN LLL NYAQFL+LV  DYDRAEE FK
Sbjct: 415 LISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDRAEEYFK 474

Query: 463 RAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG 522
           RA+  +PP+AEA  +YA FLW VRKDLWAAEET+ +A++A+P +S YA+ YA FLWNTGG
Sbjct: 475 RAVAVEPPEAEAFDKYAAFLWQVRKDLWAAEETFLEAISADPGNSYYAANYAHFLWNTGG 534

Query: 523 EETCFPLSSSQ 533
           ++TCFPL S +
Sbjct: 535 DDTCFPLDSPE 545

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.742	0.748	0.447	2.3e-93
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.709	0.693	0.457	8e-91
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.411	0.431	0.444	3.6e-78
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.190	0.355	0.378	1.2e-10
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.151	0.299	0.378	1.2e-08
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.15	0.340	0.378	5.8e-06
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.211	0.373	0.298	7.2e-06

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 192/429 (44%), Positives = 279/429 (65%)

Query:   121 SMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWK 180
             +++F +P ++  E+++     EP   P  E +   +IE +AN V +PLSLR+IK+K++W+
Sbjct:   121 TLRFNIPHHDDDENSI-----EP---PWNEMVHLSSIEMKANSVDLPLSLRIIKKKRQWE 172

Query:   181 EGFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFV 240
             EG   A + A CS+NKAFSS+VF+IRELQ+  LH+RE L+ EDL+EI+ +++ EM  SFV
Sbjct:   173 EGVKQAGESACCSMNKAFSSMVFMIRELQSFTLHMREILFYEDLQEILLRVREEMQQSFV 232

Query:   241 WLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPGXXXXXXXXXXLTGEKDQE 300
             WLFQQVFS TPTLMVYVMILLANFTV+S+ NN    A+++P              E ++ 
Sbjct:   233 WLFQQVFSATPTLMVYVMILLANFTVYSIGNNSSALAAVAP--LPPTITELTTVSETEET 290

Query:   301 TSEIDSSTMKNLLLS-----ISDIG--NDGDGKKVSRISSGNADKRFSRSSPSIQYPSFI 353
               + DSS +K   +S     I+ +G  N+G G  V  + SG        S  S Q+ + I
Sbjct:   291 NVKFDSSVVKTFFVSSPSGSIASVGGNNNGGGGNVKPVLSGTDG---DGSDGSEQFRTII 347

Query:   354 PYEMSEVSS---GKQFPMN-KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTV 409
             P  +S++SS   G +  ++ ++E  LWNS+++EA R+Q  +    LD ET + FV+ V  
Sbjct:   348 PEGVSQLSSSNFGSEPSVSGQDEHRLWNSMVEEAERMQYSNIDDSLDQETRKRFVSHVEA 407

Query:   410 KLEPDDYMDYFRTDLLYQMGVAEEXXXXXXXXXYAQFLHLVTKDYDRAEECFKRAIQSDP 469
             ++E ++   YF+T+L+YQ  +++E         YAQFL+LV+ D+DRAEE FKRA+  +P
Sbjct:   408 RVEAEEDTGYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEP 467

Query:   470 PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPL 529
              DAEA S+YA FLW  R DLWAAEET+ +A+ A+P +S YA+ YA+FLWNTGG++TCFPL
Sbjct:   468 KDAEAFSKYATFLWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTGGDDTCFPL 527

Query:   530 SSSQDDYNH 538
                 DD +H
Sbjct:   528 ----DDESH 532

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 185/404 (45%), Positives = 257/404 (63%)

Query:   142 EPVDWPEREEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEG-FGDAEDFAYCSVNKAFSS 200
             EP  WPE  ++   NIE++AN V +PLSLR+IKRK + +EG      + A CSV KAFSS
Sbjct:   160 EP-PWPEMVQMS--NIERKANSVDLPLSLRIIKRKLQMEEGVLNQVGESACCSVKKAFSS 216

Query:   201 LVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVWLFQQVFSRTPTLMVYVMIL 260
             +VF+IRELQ+  LH+RE L  EDL+ I+ ++++EM +SFVWLFQQVFS TPTLMV VMIL
Sbjct:   217 MVFMIRELQSFTLHMRELLLFEDLQGILHRVRKEMQASFVWLFQQVFSATPTLMVSVMIL 276

Query:   261 LANFTVHSMSNNVGFAASLSPGXXXXXXXXXXLTGEKDQETSE-IDSSTMKNLLLS---- 315
             LANFTV+S+ +N   AA++SP               + QET++  DSS +K   +S    
Sbjct:   277 LANFTVYSIESNSALAAAVSPPTTLSFSFETTAEISETQETNQKFDSSMVKTFSVSSPYG 336

Query:   316 -ISDIGNDGDGKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMN-KEEL 373
               S +G  G       + SG  D      S   +   F    +   S+     ++ +EE+
Sbjct:   337 KTSFVGGGGGNNIPPPVQSGT-D---GDGSDQFRKSQFSSSSLGATSADSDVSVSGQEEI 392

Query:   374 DLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEE 433
              LWNS+L+E  +++       LDHETM+  V+PV  +LE ++ MDYF+T+LLYQ G+++E
Sbjct:   393 RLWNSILEETAKMET------LDHETMKGMVSPVEARLEAEESMDYFKTELLYQTGLSQE 446

Query:   434 XXXXXXXXXYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493
                      YAQFL+L+  DYDRAE+ FKRA +++P DAEAL++YA FLW  R D+W AE
Sbjct:   447 PGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRARNDIWRAE 506

Query:   494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDDYN 537
             ETY +A++A+P +S Y++ YA FLWNTGG+ETCFPL +     N
Sbjct:   507 ETYLEAISADPTNSVYSANYAHFLWNTGGDETCFPLDAPSQQNN 550

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 105/236 (44%), Positives = 150/236 (63%)

Query:   307 STMKNLLLSISD-IGNDGDGKKVSRI--SSGNADKRFSRSS--PSIQYP--SFIPYEMSE 359
             S   NL ++ S  + N G  +   RI  SS     +   S    SI +   S +P     
Sbjct:   285 SVASNLPIAASPPVVNKGPDQTQQRIDFSSLKESTKLDGSKWLGSINFDKVSHLPRHRDS 344

Query:   360 VSSGKQFPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDY 419
             VS G+   M +EE+ LWNS+++EA ++Q+ S    +D +     V+P+T ++E DDY +Y
Sbjct:   345 VS-GEG--MREEEVSLWNSMVEEADQMQDSS----VDRDMRLRLVSPITARIELDDYANY 397

Query:   420 FRTDLLYQMGVAEEXXXXXXXXXYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479
              RT+LLY++G+A+E         YAQFL+LVT+D++RAE CFK+AI+S+  DAE  S+YA
Sbjct:   398 TRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYA 457

Query:   480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDD 535
              FLW VR DLWAAEE + +A++A+P +S YA+ YA+FLWNTGGEETCFPL  S  +
Sbjct:   458 IFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNTGGEETCFPLEDSTQE 513

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/103 (37%), Positives = 52/103 (50%)

Query:   422 TDLLYQMGVAEEXXXXXXXXXYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF 481
             TD+ Y+  +            YA+FL  V KDY +AEE   RAI   P D   L+ YA+ 
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
             +W + KD   AE  + QA+AA P      + YA FLW+   EE
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEE 258

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query:   443 YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA 502
             Y +FL+ V KD + AEE + RAI  +P D EALS Y   +W  ++D   A+  + QA+ A
Sbjct:   171 YGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVNA 230

Query:   503 EPNSSSYASKYASFLWNTGGEE 524
              PN       YA F+W    ++
Sbjct:   231 SPNDCMVLGSYARFMWEAEDDD 252

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 31/82 (37%), Positives = 44/82 (53%)

Query:   443 YAQFLHLVTKDYDRAEECFKRAIQSDPP-DAEALSQYADFLWLVRKDLWAAEETYQQAMA 501
             YA+FL  V  D  +AEE  +RA+ S+   D E LS Y D +W    D   A+  Y QA+ 
Sbjct:   131 YARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQ 190

Query:   502 AEPNSSSYASKYASFLWNTGGE 523
             + P+  +  + YA FLW+   E
Sbjct:   191 SSPDDCNVLASYARFLWDAEEE 212

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 34/114 (29%), Positives = 50/114 (43%)

Query:   422 TDLLYQMGVAEEXXXXXXXXXYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF 481
             TD  Y+  +            YA+FL  V  D  +AEE  +RAI  +  D   LS YAD 
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSSQDD 535
             +    +D   A   Y+QA+   P      + YA FLW+   +E    L   +++
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEEN 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      540       508   0.00086  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  312 KB (2160 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.79u 0.11s 40.90t   Elapsed:  00:00:02
  Total cpu time:  40.79u 0.11s 40.90t   Elapsed:  00:00:02
  Start:  Tue May 21 08:52:33 2013   End:  Tue May 21 08:52:35 2013

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.003
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	0.003
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	0.003
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE 494
           +N   L N    L     DYD A E +++A++ DP +AEA    A     + KD   A E
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 495 TYQQAMAAEP 504
             ++A+  +P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
            Y+  +  +P+N     N A   +     Y+ A E +++A++ DP +A+A        + 
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 485 VRKDLWAAEETYQQAMAAEPN 505
                  A E Y++A+  +PN
Sbjct: 81  -LGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 443 YAQFLHLV-TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501
            A     +   DYD A    + A+   P  AEAL    + L L +  L  A    + A+A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEAL-LRQGRLAEAAALLRAALA 59

Query: 502 AEPNSS 507
           A+P+  
Sbjct: 60  ADPDDP 65

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP 469
            Y+  +  +P+N     N A     + KDY+ A E  ++A++ DP
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW 490
            ++P+N  L  N    ++L   D  +A E F++A+  +P    A +  A  + +   +  
Sbjct: 459 KKQPDNASLH-NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR-IDIQEGNPD 516

Query: 491 AAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET 525
            A + +++ +  +P +       A     TG EE 
Sbjct: 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y+  +A +P +    L  AQ        +D A       + +DP + +AL    D L L 
Sbjct: 148 YEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLL-LS 205

Query: 486 RKDLWAAEETYQQAMAAEPNSSSY 509
             ++  A   Y++A+A  PN+ + 
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAV 229

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQ------SDPPD-AEALSQYADFLWLVRKDLWA 491
            L N A  L  +  DYD A E  ++A++       D P+ A AL+  A        D   
Sbjct: 7   ALNNLALVLRRL-GDYDEALELLEKALELARELGEDHPETARALNNLARLYLA-LGDYDE 64

Query: 492 AEETYQQAMAA 502
           A E  ++A+A 
Sbjct: 65  ALEYLEKALAL 75

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQ 498
            LLN    L+    DYD A E +++A++ DP +A+A    A            A E Y++
Sbjct: 2   ALLNLGN-LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEK 59

Query: 499 AMAAEPNSSSYASKYASFLWNTG 521
           A+  +P+++          +  G
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLG 82

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512
           D + A+E   +A++ DP D  A    A   +    +L  AE+++++A+   PN+    + 
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALA-LYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104

Query: 513 YASFLWNTGGEE 524
           Y +FL   G  E
Sbjct: 105 YGTFLCQQGKYE 116

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF 481
            LL  A+   L   D D A    +RA+  DP D EAL   A  
Sbjct: 3   ALLALAR-ALLALGDLDEALALLRRALALDPDDPEALLLLARL 44

Length = 44

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 449 LVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS 508
           L   +  +AE  +++A Q D  D+ A+    D   + RKD  AAE  YQQA+  +P +++
Sbjct: 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTN 420

Length = 1157

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.003
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482
            L   + +   PN    LLN    L  +   Y+ A E  ++A+  DP    A +  A   
Sbjct: 81  LLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPDLAEALLALGA 139

Query: 483 WLVRKDLWAAEETYQQAMAAEPNSSSYASKY 513
                D   A E Y++A+  +P  +  A   
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEAL 170

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.1 bits (89), Expect = 0.004
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           L +  +   P++    L     L+L    Y+ A E +++A++ DP +AEAL   A  L L
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLA-LLLL 247

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW 518
                  A E  ++A+  +P+  +        L 
Sbjct: 248 ELGRYEEALEALEKALELDPDLYNLGLALLLLLA 281

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.46
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.41
PRK12370	553	invasion protein regulator; Provisional	99.36
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.31
KOG0553	304	consensus TPR repeat-containing protein [General f	99.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
PRK12370	553	invasion protein regulator; Provisional	99.29
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.24
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.19
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.17
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.1
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.01
KOG1126	638	consensus DNA-binding cell division cycle control	99.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.91
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.87
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
KOG1125	579	consensus TPR repeat-containing protein [General f	98.86
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.82
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.77
KOG1125	579	consensus TPR repeat-containing protein [General f	98.77
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.77
PLN02789	320	farnesyltranstransferase	98.73
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.72
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.72
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.7
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.68
PLN02789	320	farnesyltranstransferase	98.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.66
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.65
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.63
PRK11906	458	transcriptional regulator; Provisional	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.58
KOG2076	895	consensus RNA polymerase III transcription factor	98.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.55
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.54
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.53
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.53
PRK14574	822	hmsH outer membrane protein; Provisional	98.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.5
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.5
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.49
PF13371	73	TPR_9: Tetratricopeptide repeat	98.49
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.48
PRK10803	263	tol-pal system protein YbgF; Provisional	98.48
PRK11906	458	transcriptional regulator; Provisional	98.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.34
PF13371	73	TPR_9: Tetratricopeptide repeat	98.32
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.32
PRK14574	822	hmsH outer membrane protein; Provisional	98.31
PRK15331	165	chaperone protein SicA; Provisional	98.29
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.28
KOG1129	478	consensus TPR repeat-containing protein [General f	98.27
KOG0553	304	consensus TPR repeat-containing protein [General f	98.26
PF12688	120	TPR_5: Tetratrico peptide repeat	98.26
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.25
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.24
KOG2003	840	consensus TPR repeat-containing protein [General f	98.24
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.22
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.16
PRK10803	263	tol-pal system protein YbgF; Provisional	98.12
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.09
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.09
KOG2003	840	consensus TPR repeat-containing protein [General f	98.05
PF12688	120	TPR_5: Tetratrico peptide repeat	98.05
PRK15331	165	chaperone protein SicA; Provisional	98.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.9
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.85
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.84
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.8
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.76
PF13431	34	TPR_17: Tetratricopeptide repeat	97.71
PF13431	34	TPR_17: Tetratricopeptide repeat	97.7
KOG2076	895	consensus RNA polymerase III transcription factor	97.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.67
PF13428	44	TPR_14: Tetratricopeptide repeat	97.67
KOG1129	478	consensus TPR repeat-containing protein [General f	97.64
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.58
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.56
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.51
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.51
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.5
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.49
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.47
KOG4555	175	consensus TPR repeat-containing protein [Function	97.46
KOG4234	271	consensus TPR repeat-containing protein [General f	97.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.43
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.39
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.38
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.36
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.35
PF13512	142	TPR_18: Tetratricopeptide repeat	97.35
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.35
KOG4555	175	consensus TPR repeat-containing protein [Function	97.34
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.34
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.29
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.24
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.22
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.18
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.15
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.13
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.11
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.05
PLN03077	857	Protein ECB2; Provisional	97.04
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.03
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.89
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.87
PRK04841	903	transcriptional regulator MalT; Provisional	96.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.81
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.75
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.74
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.68
PRK04841	903	transcriptional regulator MalT; Provisional	96.61
PF13512	142	TPR_18: Tetratricopeptide repeat	96.55
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.54
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.47
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.45
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.42
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.38
PLN03218	1060	maturation of RBCL 1; Provisional	96.38
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.36
PLN03218	1060	maturation of RBCL 1; Provisional	96.24
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.24
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.17
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.13
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.9
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.85
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.82
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.73
PLN03077	857	Protein ECB2; Provisional	95.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.65
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.62
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.59
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.55
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.49
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.33
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.27
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.23
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.09
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.91
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.82
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.77
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.77
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.77
KOG4234	271	consensus TPR repeat-containing protein [General f	94.77
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.69
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.61
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.45
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.44
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.36
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.11
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.1
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.05
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.04
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.01
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	93.91
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.88
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.8
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.56
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.56
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.56
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.53
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.44
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.4
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.39
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.98
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.72
PRK10941	269	hypothetical protein; Provisional	92.62
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.54
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.04
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.55
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.32
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.15
KOG2471	696	consensus TPR repeat-containing protein [General f	91.15
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.11
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.86
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.53
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.48
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	90.44
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.31
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	90.05
KOG1310	758	consensus WD40 repeat protein [General function pr	89.91
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	89.64
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.42
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	89.3
PRK10941	269	hypothetical protein; Provisional	88.85
KOG3785	557	consensus Uncharacterized conserved protein [Funct	88.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	88.21
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.16
KOG1258	577	consensus mRNA processing protein [RNA processing	88.15
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.1
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.63
KOG1585	308	consensus Protein required for fusion of vesicles	87.52
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	87.4
KOG3364	149	consensus Membrane protein involved in organellar	87.35
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.13
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.87
KOG2471	696	consensus TPR repeat-containing protein [General f	86.73
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.72
KOG4507	886	consensus Uncharacterized conserved protein, conta	86.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	86.0
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	85.5
KOG1258	577	consensus mRNA processing protein [RNA processing	85.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.93
KOG1586	288	consensus Protein required for fusion of vesicles	84.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	82.38
KOG1310	758	consensus WD40 repeat protein [General function pr	81.67
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.48
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.43
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	80.55
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	80.42

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1.8e-13  Score=124.58  Aligned_cols=104  Identities=18%  Similarity=0.130  Sum_probs=97.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|++++..+|.++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|++
T Consensus        36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~~~eAi~  113 (144)
T PRK15359         36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGEPGLARE  113 (144)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHH
Confidence            4599999999999999999999999999999998 4999999999999999999999999999999776 5799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      .|++|++++|+++.++.+++.++..+
T Consensus       114 ~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        114 AFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999987654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.46  E-value=8.4e-13  Score=126.68  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD--LWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD--~EEAe  493 (540)
                      .++.+++...++++++.+|+|+.+|..+|.++. ..|++++|+.+|++|++++|++++++.++|.+++...|+  +++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            367799999999999999999999999999888 599999999999999999999999999999876555666  59999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.+++|++++|+++.+++++|..+...|++++
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=6e-14  Score=153.39  Aligned_cols=126  Identities=20%  Similarity=0.199  Sum_probs=88.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .|||..+..+.+.+++.-   ..+.|++|..+|++|+.+.|+++.++.|+|-+|++ +|+.|-|+..|+|||+++|++++
T Consensus       246 kldP~f~dAYiNLGnV~k---e~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~  321 (966)
T KOG4626|consen  246 KLDPNFLDAYINLGNVYK---EARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPD  321 (966)
T ss_pred             cCCCcchHHHhhHHHHHH---HHhcchHHHHHHHHHHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchH
Confidence            457777777777766642   23566777777777777777777777777776664 77777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ++.|+|..|-. +|+..||+.+|.+|+.+.|+++++..|||+++.++|..|
T Consensus       322 Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  322 AYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             HHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence            77777776543 577777777777777777777777777777777777655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.41  E-value=1.2e-12  Score=119.08  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204          423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA  502 (540)
Q Consensus       423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeL  502 (540)
                      +.+|++|++++|++   +.++|..+.. .|++++|..+|++++.++|+++.++.++|.++. ..|++++|+.+|++|+++
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence            67999999999986   5578888884 999999999999999999999999999999876 479999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCcc
Q 009204          503 EPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       503 DPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++.+++++|.++...|++++
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.36  E-value=9e-12  Score=135.46  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=94.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..+++++|..++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|++
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence            4467899999999999999999999999998887 4899999999999999999999999999998765 4788999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|++|++++|.++.++..++.+++..|++++
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee  424 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDD  424 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence            9999999999988877777777778888764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.35  E-value=1.8e-12  Score=142.05  Aligned_cols=106  Identities=16%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |+..+|+++|.+||.+.|+++++++|+|.++.+ +|.+++|..+|++|++..|..+.+++|||.+| +++|++++|+.+|
T Consensus       334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~Y  411 (966)
T KOG4626|consen  334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCY  411 (966)
T ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHH
Confidence            555666666666666666666666666665553 55666666666666666666666666665543 3455566666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +.|++++|..++++.|+|+.|..+|+..
T Consensus       412 kealrI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  412 KEALRIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence            6666666666666666666666666544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.31  E-value=1.3e-11  Score=122.75  Aligned_cols=105  Identities=24%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      |+.+.|.+.|++|++++|++.++++|||.||+ .+|++++|..+|++|+. +|.+   +..+-|+|.+- ...|+.+.|.
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~  159 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCA-LKAGQFDQAE  159 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHH-hhcCCchhHH
Confidence            55566666666666666666666666666665 35666666666666655 3333   33555555433 2345566666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ++|+++++++|+++.....++..++..|++-
T Consensus       160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         160 EYLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            6666666666666666666666666655553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.31  E-value=1.2e-11  Score=126.40  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      ++|.+|...|.+||+++|+|+-.|.|.|.+|. ..|.++.|.+-.+.||++||.+..+|..||.+++. +|++++|++.|
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay  172 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY  172 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence            78999999999999999999999999999999 59999999999999999999999999999998764 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +||+.++|+|..+..+|..+-..++..+
T Consensus       173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  173 KKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999988888876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=1.9e-11  Score=106.39  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=77.8

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .++|+........+...   ...|++++|..+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.
T Consensus        11 ~~~p~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~   86 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNL---YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPR   86 (135)
T ss_pred             cCChhhHHHHHHHHHHH---HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChH
Confidence            44555544443333222   23467777888888877777877777777777777 377788888888888888888777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      .+.++|.++. ..|++++|+.+|+++++++|++...
T Consensus        87 ~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        87 PYFHAAECLL-ALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccchH
Confidence            7777777655 3677888888888888887777663

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=2.8e-11  Score=131.67  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=99.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.++..++.+++. .|++++|+.
T Consensus       350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~  427 (553)
T PRK12370        350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIR  427 (553)
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHH
Confidence            3489999999999999999999999999999988 49999999999999999999999887776665554 688999999


Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAE-PNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLD-Pdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++++++.+ |+++.++.++|.+|..+|++++
T Consensus       428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e  459 (553)
T PRK12370        428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHEL  459 (553)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence            999999885 8899999999999999999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.28  E-value=3.7e-11  Score=131.36  Aligned_cols=128  Identities=13%  Similarity=0.211  Sum_probs=101.4

Q ss_pred             CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204          395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA  474 (540)
Q Consensus       395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA  474 (540)
                      ++|.....+...+...   ...|++++|..+|+++++.+|+++.+++++|.+++ ..|++++|+.+|++|++++|++..+
T Consensus       360 l~P~~~~~~~~la~~~---~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~  435 (615)
T TIGR00990       360 LDPRVTQSYIKRASMN---LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFS  435 (615)
T ss_pred             cCCCcHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHH
Confidence            3555444444433332   24578888888888888888888888888888877 4888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          475 LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       475 l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      +.++|.+++ ..|++++|+.+|++++...|+++.++..+|.++..+|++++|-
T Consensus       436 ~~~la~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  487 (615)
T TIGR00990       436 HIQLGVTQY-KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI  487 (615)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            888888765 4788888888888888888888888888888888888887653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.27  E-value=6.3e-11  Score=123.04  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .++|++|+.+|++||+++|+++.+++++|.++. ..|++++|+.++++||+++|+++.++.++|.+++. .|++++|+.+
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~   92 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAA   92 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            489999999999999999999999999999988 59999999999999999999999999999988764 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      |++|++++|+++.+...++.+...+.
T Consensus        93 ~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         93 LEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999888888865553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.26  E-value=4.8e-11  Score=130.45  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|...|++++.++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++.++|.+++ ..|++++|+.
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~  420 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGK  420 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence            35899999999999999999999999999999884 999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++++|++..++.++|.++..+|++++|
T Consensus       421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999998743

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=2.7e-11  Score=120.60  Aligned_cols=107  Identities=20%  Similarity=0.327  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++..|...+++||+.||++..+|..+|.++. ..|+.+.|.+.|++|+.++|++.++++|||+||+. +|++++|..
T Consensus        47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q  124 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQ  124 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHH
Confidence            3489999999999999999999999999998777 69999999999999999999999999999999986 679999999


Q ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPN---SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPd---npeal~NLA~~L~~~GR~E  524 (540)
                      +|++|+. +|.   .+..+.|+|.+..++|+.+
T Consensus       125 ~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~  156 (250)
T COG3063         125 QFERALA-DPAYGEPSDTLENLGLCALKAGQFD  156 (250)
T ss_pred             HHHHHHh-CCCCCCcchhhhhhHHHHhhcCCch
Confidence            9999998 554   5568999999999999976

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=9.1e-11  Score=118.16  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=86.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|...|++|++++|+++.+|+++|.++. ..|++++|++.|++|++++|++..++.++|.+++. .|++++|++
T Consensus        76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~  153 (296)
T PRK11189         76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQD  153 (296)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            4589999999999999999999999999999888 59999999999999999999999999999998764 789999999


Q ss_pred             HHHHHHHhCCCCHH
Q 009204          495 TYQQAMAAEPNSSS  508 (540)
Q Consensus       495 ~feKALeLDPdnpe  508 (540)
                      .|+++++++|+++.
T Consensus       154 ~~~~al~~~P~~~~  167 (296)
T PRK11189        154 DLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHhCCCCHH
Confidence            99999999999985

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.24  E-value=6.2e-11  Score=137.79  Aligned_cols=107  Identities=11%  Similarity=0.062  Sum_probs=100.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|++|++.+|+ +.++.++|.++.. .|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+++
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            39999999999999999996 9999999999884 9999999999999999999999999999988764 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++|++++|+++.++.++|.++..+|++++
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999763

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=2.1e-10  Score=103.35  Aligned_cols=111  Identities=21%  Similarity=0.282  Sum_probs=100.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD--PPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD--PndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++..  |.....+.++|.++. ..|++++|
T Consensus        77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A  154 (234)
T TIGR02521        77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKA  154 (234)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHH
Confidence            4589999999999999999999999999999988 4999999999999999864  566778888998776 47999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      +.+|+++++.+|+++..+..+|.++...|+++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999998653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=2.3e-10  Score=102.99  Aligned_cols=111  Identities=18%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             CCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..|++++|...|++++...  |.....+.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.+++. .|++++|
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A  188 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDA  188 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHH
Confidence            4589999999999999864  566788999999888 59999999999999999999999999999988764 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      +.++++++...|+++..+..++.++...|+.+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  223 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ  223 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=2.3e-11  Score=133.85  Aligned_cols=109  Identities=15%  Similarity=0.202  Sum_probs=103.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .++|.|+.+|++||..+|.+-.+|+++|.+|. ++++++.|+-+|++|++++|.+...+..+|.++. ++|+.++|+.+|
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~  546 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLY  546 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHH
Confidence            67999999999999999999999999999988 6999999999999999999999999999999875 578999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      ++|+.+||.++...++.|.+|...+++++|.
T Consensus       547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  547 EKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            9999999999999999999999999998664

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.19  E-value=1.4e-10  Score=130.60  Aligned_cols=109  Identities=7%  Similarity=-0.064  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+.+++.+++++|++..++.++|..|.+ .+++++|...+++++..+|+++++++++|.++. ..|++++|++
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~  175 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADA  175 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHH
Confidence            45999999999999999999999999999999995 999999999999999999999999999999765 5799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++.+|+++.++.++|++|..+|+.++
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~  206 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWR  206 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=2.5e-10  Score=99.44  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204          424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE  503 (540)
Q Consensus       424 ~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD  503 (540)
                      ..|+++++.+|++..++..+|..+. ..|++++|.++|++++.++|+++.++.++|.++.. .|++++|+++|++++..+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999988 49999999999999999999999999999998765 689999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCccc
Q 009204          504 PNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       504 Pdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++..++++|.++...|+++.|
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999998754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.17  E-value=5.6e-11  Score=116.88  Aligned_cols=113  Identities=22%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|+.++|+.+|++|++++|+|+.++..++.++. ..|+.++|.+.+++..+..|+++..+..+|.++.. .|++++|+.
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al~  235 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEALE  235 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccccccc
Confidence            4599999999999999999999999999999888 49999999999999999999999999999998764 689999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccccC
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPL  529 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~pl  529 (540)
                      +|+++++.+|+++.++.+||.+|...|+.++|..+
T Consensus       236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~  270 (280)
T PF13429_consen  236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL  270 (280)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999987543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.17  E-value=2.4e-10  Score=127.23  Aligned_cols=108  Identities=19%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDR----AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~de----AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      .|++++|+..|+++++.+|+++.++.++|.++.. .|++++    |+.+|++|++++|+++.++.++|.++.. .|++++
T Consensus       225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~e  302 (656)
T PRK15174        225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEK  302 (656)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence            4677777777777777777777777777777663 777764    6777777777777777777777776553 567777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+.+|+++++++|+++.++.++|.++..+|++++
T Consensus       303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            7777777777777777777777777777777664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=3.7e-10  Score=113.82  Aligned_cols=108  Identities=15%  Similarity=0.067  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEP---N-NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP---~-Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      +..+.++..+.++|...|   . ++..|+++|.++. ..|++++|...|++|++++|+++.+|+++|.++. ..|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHH
Confidence            567889999999997433   3 3678999999888 5999999999999999999999999999998765 58999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      ++.|++|++++|++..++.++|.++...|++++|
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999998754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=6.2e-10  Score=106.99  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD--YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD--~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..|++++|..+|++|++++|+++.++.++|.+++...|+  +++|.+.+++|++++|+++.++.++|..++. .|++++|
T Consensus        85 ~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~A  163 (198)
T PRK10370         85 WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQA  163 (198)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHH
Confidence            348999999999999999999999999999976434677  5999999999999999999999999998764 8999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 009204          493 EETYQQAMAAEPNSSS  508 (540)
Q Consensus       493 ee~feKALeLDPdnpe  508 (540)
                      +.+|+++++++|.+..
T Consensus       164 i~~~~~aL~l~~~~~~  179 (198)
T PRK10370        164 IELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHhhCCCCcc
Confidence            9999999999986554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.10  E-value=8.5e-10  Score=118.42  Aligned_cols=108  Identities=23%  Similarity=0.227  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++.. .|+ .+|+.++++++++.|+++..+.++|.++. ..|++++|+++
T Consensus       783 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~  859 (899)
T TIGR02917       783 QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV-EKGEADRALPL  859 (899)
T ss_pred             CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHH
Confidence            3667777777777777777777777777776663 666 66777777777777777777777777654 36777777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++++|.++.++.+++.+++..|+.++|
T Consensus       860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  890 (899)
T TIGR02917       860 LRKAVNIAPEAAAIRYHLALALLATGRKAEA  890 (899)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence            7777777777777777777777777776653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.10  E-value=4e-10  Score=88.61  Aligned_cols=68  Identities=29%  Similarity=0.370  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 009204          435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-DLWAAEETYQQAMAAEP  504 (540)
Q Consensus       435 ~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG-D~EEAee~feKALeLDP  504 (540)
                      +++.+|.++|..++. .|++++|+.+|++||+++|+++.++.++|.+++. .| ++++|++++++|++++|
T Consensus         1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            478899999999995 9999999999999999999999999999998765 67 79999999999999998

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.09  E-value=1.2e-09  Score=121.68  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=99.2

Q ss_pred             CCCHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFR----TDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~ee----Ae~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      .|++++    |+.+|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++. ..|++++
T Consensus       259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~-~~G~~~e  336 (656)
T PRK15174        259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALR-QVGQYTA  336 (656)
T ss_pred             cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHH
Confidence            366664    8999999999999999999999999994 999999999999999999999999999999876 4799999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+..|+++++.+|+++.++..+|.++...|++++
T Consensus       337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de  370 (656)
T PRK15174        337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE  370 (656)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence            9999999999999998888888999999999774

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.07  E-value=1.2e-09  Score=110.02  Aligned_cols=116  Identities=14%  Similarity=0.097  Sum_probs=107.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|+|.+|...+++|...+|+|..+|..+|.+|.+ .|++++|...|.+|+++.|+++.+.+|+|..++ .+||++.|+.
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~  189 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAET  189 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHH
Confidence            34999999999999999999999999999999885 999999999999999999999999999999765 5899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccccCCCC
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETCFPLSSS  532 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~pl~~~  532 (540)
                      ++.+|...-+.+..+..|++.+...+|+.+.+-.+.++
T Consensus       190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999999999999999999999998876555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.06  E-value=1.5e-09  Score=127.49  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=95.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----------
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW-----------  483 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~-----------  483 (540)
                      ..|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|++..++.+++.++.           
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3588999999999999999999999999999888 4999999999999999999999888777665431           


Q ss_pred             ------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          484 ------------------------------LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ------------------------------~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                                                    ...|++++|+++|++|++++|+++.+++.+|.+|..+|++++|
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                          1358899999999999999999999999999999999998753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=7.7e-10  Score=128.81  Aligned_cols=108  Identities=15%  Similarity=0.016  Sum_probs=100.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.++|.++. ..|++++|+.
T Consensus       621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~-~lGd~~eA~~  698 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ-RLDDMAATQH  698 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence            56999999999999999999999999999999995 999999999999999999999999999999875 5899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +|++|++++|+++.+...+|.++....+.+
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQQRFNFR  728 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence            999999999999999999998887666543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.05  E-value=2.5e-09  Score=101.09  Aligned_cols=112  Identities=10%  Similarity=0.028  Sum_probs=93.7

Q ss_pred             cCC-HHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          394 ILD-HETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       394 aLD-~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      -++ ++.+..+=+....   .-+.|++++|+..|+-....||.+...|+|||.++. .+|++++|+.+|.+|+.++|+||
T Consensus        28 ~~~~~~~l~~lY~~A~~---ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQ---LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CCChHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence            445 6666665443222   235699999999999999999999999999999888 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAE---PNSSSYA  510 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLD---Pdnpeal  510 (540)
                      .++.++|..++ ..|+.++|++.|+.|+...   |.+..+.
T Consensus       104 ~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~  143 (157)
T PRK15363        104 QAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVSEHQILR  143 (157)
T ss_pred             hHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence            99999998776 4799999999999999986   4444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.01  E-value=4.1e-09  Score=79.68  Aligned_cols=88  Identities=24%  Similarity=0.306  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|...++++++..|+++.++..+|.++.. .+++++|+++|++++.+.|.+..++..+|.++.. .|++++|..+
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~   90 (100)
T cd00189          13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEA   90 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHH
Confidence            4889999999999999999999999999998884 8999999999999999999999999999987664 6889999999


Q ss_pred             HHHHHHhCCC
Q 009204          496 YQQAMAAEPN  505 (540)
Q Consensus       496 feKALeLDPd  505 (540)
                      +++++..+|+
T Consensus        91 ~~~~~~~~~~  100 (100)
T cd00189          91 YEKALELDPN  100 (100)
T ss_pred             HHHHHccCCC
Confidence            9999998874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=3.3e-10  Score=124.91  Aligned_cols=108  Identities=16%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      +++++.|+++|++|+++||++..+|.-+|.=+. ...++|+|..+|++||..+|.+..||+.+|.++.+ +++++.|+-+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~  511 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFH  511 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHH
Confidence            477999999999999999998888888887666 48889999999999999999999999999988765 6789999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++|++++|.+......+|.++.+.|+.|+
T Consensus       512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~  541 (638)
T KOG1126|consen  512 FQKAVEINPSNSVILCHIGRIQHQLKRKDK  541 (638)
T ss_pred             HHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence            999999999999999999999999998763

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.00  E-value=6.8e-09  Score=117.38  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=100.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+++++++.+|+++. +..+|.++. ..|++++|+.
T Consensus        61 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~  137 (765)
T PRK10049         61 NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK-RAGRHWDELR  137 (765)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHH
Confidence            4589999999999999999999999999999888 499999999999999999999999 999998765 5799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .|+++++++|+++.++..+|.++...|+.+.
T Consensus       138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049        138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence            9999999999999999999999998888763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.98  E-value=5.4e-09  Score=112.29  Aligned_cols=108  Identities=22%  Similarity=0.291  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|...|++++..+|+++.++..+|.++. ..|++++|++.++++++.+|++..++..+|.++. ..|++++|+.+
T Consensus       138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~  215 (899)
T TIGR02917       138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLL-SLGNIELALAA  215 (899)
T ss_pred             cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcCCHHHHHHH
Confidence            366777777777777777777777777777666 3777777777777777777777777776666554 35677777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++++.++|+++.++..++.++...|++++
T Consensus       216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       216 YRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777777777777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.98  E-value=2.6e-09  Score=100.97  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=87.2

Q ss_pred             HHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          429 GVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       429 ALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      ...++ ++.-+.++.||..++. .|++++|+..|+.+..+||.++..|.+||.++ +.+|++++|+..|.+|+.++|++|
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCc
Confidence            34457 7888899999999995 99999999999999999999999999999875 568999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcc
Q 009204          508 SYASKYASFLWNTGGEET  525 (540)
Q Consensus       508 eal~NLA~~L~~~GR~Et  525 (540)
                      ..++++|.+++..|+.+.
T Consensus       104 ~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363        104 QAPWAAAECYLACDNVCY  121 (157)
T ss_pred             hHHHHHHHHHHHcCCHHH
Confidence            999999999999999763

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.97  E-value=4.4e-09  Score=123.60  Aligned_cols=108  Identities=21%  Similarity=0.127  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH--------------HHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA--------------LSQYADF  481 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA--------------l~NLA~~  481 (540)
                      .|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.+|++|++++|++...              +...|..
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQ-QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            4788888888888888888888888888887774 888888888888888888876532              1122433


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +. ..|++++|+.+|++|++++|+++.++..+|.++..+|++++
T Consensus       361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~e  403 (1157)
T PRK11447        361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAA  403 (1157)
T ss_pred             HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            33 36778888888888888888888777788888888777653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.94  E-value=1.6e-08  Score=84.67  Aligned_cols=93  Identities=22%  Similarity=0.175  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~  489 (540)
                      .|++++|...|++++..+|++   +.+++.+|.++. ..|++++|+.+|++++..+|++   +.++.++|.++. ..|++
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~   92 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDK   92 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCCh
Confidence            489999999999999999887   578889999988 5999999999999999999986   678999998776 47899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 009204          490 WAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal  510 (540)
                      ++|+.+|+++++..|+++.+.
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHHCcCChhHH
Confidence            999999999999999987754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=4e-09  Score=82.32  Aligned_cols=64  Identities=27%  Similarity=0.417  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      .+|..++. .|++++|+++|+++++.+|++++++..+|.+++ .+|++++|+.+|+++++++|++|
T Consensus         2 ~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            56888884 999999999999999999999999999999877 47999999999999999999986

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.91  E-value=2.7e-08  Score=91.44  Aligned_cols=105  Identities=22%  Similarity=0.195  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------Hc
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL------VR  486 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~------~r  486 (540)
                      .|++++|..+|++|+.+.|+.   +.++.++|.++. ..|++++|+++|++|++++|.+...+.++|.++..      ..
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~  126 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ  126 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence            388999999999999997763   458999999888 59999999999999999999999999999987762      24


Q ss_pred             CCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          487 KDLW-------AAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       487 GD~E-------EAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |+++       +|+.+|++++..+|++..   ..+..+..+|+.+
T Consensus       127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~~  168 (168)
T CHL00033        127 GDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRFE  168 (168)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCCC
Confidence            5655       777788888889997653   3444555666653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.90  E-value=2.3e-08  Score=112.98  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=87.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.+++++|...+++++..+|+++.+++.+|.++.. .|++++|+++|+++++-+|++++++.++|..|. .+|+.++|..
T Consensus       132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~-~~G~~~~A~~  209 (694)
T PRK15179        132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLT-RRGALWRARD  209 (694)
T ss_pred             HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHH
Confidence            45899999999999999999999999999999985 999999999999999999999999999999765 5899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NL  513 (540)
                      .|++|+++.-+-...+.+|
T Consensus       210 ~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        210 VLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhhCcchHHHHHH
Confidence            9999999977665554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.88  E-value=2.1e-08  Score=101.34  Aligned_cols=112  Identities=19%  Similarity=0.140  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL  489 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~  489 (540)
                      ..|++++|...|+++++.+|.+..     .+.++|..+. ..|++++|+.+|+++++++|++..++..+|.++. ..|++
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~  230 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDY  230 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCH
Confidence            468999999999999999887643     5667888777 4999999999999999999999999999998765 47999


Q ss_pred             HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCccccc
Q 009204          490 WAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEETCFP  528 (540)
Q Consensus       490 EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~Et~~p  528 (540)
                      ++|+++|++++..+|++ ..++..++.++...|+++++..
T Consensus       231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999986 4667889999999999987543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.87  E-value=2.4e-08  Score=101.01  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .+++++|..+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++ ..++..++.++. ..|++++|++
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~  270 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLE  270 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHH
Confidence            367777777777777777777777777777666 3777777777777777777665 345555665544 3567777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++++++.+|+...+ ..++.++...|++++
T Consensus       271 ~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~  300 (389)
T PRK11788        271 FLRRALEEYPGADLL-LALAQLLEEQEGPEA  300 (389)
T ss_pred             HHHHHHHhCCCchHH-HHHHHHHHHhCCHHH
Confidence            777777777765443 667777777777653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.87  E-value=2e-08  Score=95.71  Aligned_cols=109  Identities=20%  Similarity=0.149  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHH----
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLV----  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~----  485 (540)
                      .|++++|...|++++..+|+++   .+++.+|.++. ..|++++|+..|+++++.+|+++.   ++..+|.+++..    
T Consensus        46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            4899999999999999999987   57899999988 599999999999999999999887   688888877642    


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCcc
Q 009204          486 ---RKDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEET  525 (540)
Q Consensus       486 ---rGD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~Et  525 (540)
                         .|++++|++.|++++..+|++..++                 ..+|.+++..|++++
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  184 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA  184 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence               2679999999999999999987553                 356788888898763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=4e-09  Score=115.25  Aligned_cols=108  Identities=18%  Similarity=0.238  Sum_probs=99.5

Q ss_pred             CHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEP--NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       418 d~eeAe~lYqkALalDP--~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .+..-.++|..|....|  .|++++..||.+++ ..|+|++|..||+.||..+|+|...|+.||..|.. ..+.++|+..
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            46677889999999999  79999999999888 59999999999999999999999999999998765 6789999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      |++|+++.|++..+++|+|..+.++|-|++|-
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            99999999999999999999999999998743

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=5.1e-08  Score=90.33  Aligned_cols=104  Identities=22%  Similarity=0.287  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC---
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD---  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD---  488 (540)
                      ..|++++|..+|+++++..|+.   +.++.++|.++. ..|++++|+.+|++|++++|++..++.++|.++.. .|+   
T Consensus        47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~  124 (172)
T PRK02603         47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKAE  124 (172)
T ss_pred             HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHh
Confidence            3499999999999999987763   468999999988 49999999999999999999999999999987654 455   


Q ss_pred             -----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          489 -----------LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       489 -----------~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                                 +++|++++++++.++|++   +......+...|+.
T Consensus       125 a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~  167 (172)
T PRK02603        125 EAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS  167 (172)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence                       688999999999999998   33445555555553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.84  E-value=2e-08  Score=75.86  Aligned_cols=86  Identities=24%  Similarity=0.349  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      +++++|..+.. .|++++|+.+++++++..|++..++..+|.++.. .+++++|+.+|++++...|.+..++..+|.++.
T Consensus         2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            56788998884 9999999999999999999999999999998765 688999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 009204          519 NTGGEETC  526 (540)
Q Consensus       519 ~~GR~Et~  526 (540)
                      ..|+++.+
T Consensus        80 ~~~~~~~a   87 (100)
T cd00189          80 KLGKYEEA   87 (100)
T ss_pred             HHHhHHHH
Confidence            99997754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.82  E-value=1e-08  Score=101.03  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=91.3

Q ss_pred             CCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..++++++...++++....  |.++..+..+|.++. ..|+.++|+++|++||+++|+|++++..++.++.. .|++++|
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~  199 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEA  199 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHH
Confidence            3488999999999987765  778899999999888 49999999999999999999999999999987754 6889999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .+.+++..+..|+++..+..+|.++..+|++++|
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            9999999998899999999999999999998754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.3e-08  Score=107.61  Aligned_cols=107  Identities=16%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +++++|..+|++||++||....+|.-+|.=+.+ +++...|++.|++|++++|.|-.+|+.+|..+ ...+-+.=|+-||
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY-eim~Mh~YaLyYf  421 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAY-EIMKMHFYALYYF  421 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHH-HHhcchHHHHHHH
Confidence            567888888888888888888888877876664 77778888888888888888888888888764 4566677788888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|+++.|+++..|..+|.+|-.+++.++
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~e  450 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEE  450 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence            88888888888888888888888877653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.2e-08  Score=107.71  Aligned_cols=108  Identities=15%  Similarity=0.089  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .+-..|...|++|+.++|.|-.+|+.+|++|. .++.+.=|+-||++|++..|+|+..|..||..+ ...++.++|+.+|
T Consensus       378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY-~kl~~~~eAiKCy  455 (559)
T KOG1155|consen  378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECY-EKLNRLEEAIKCY  455 (559)
T ss_pred             cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHhccHHHHHHHH
Confidence            56688999999999999999999999999988 699999999999999999999999999999976 5578999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .+|+...-.+..++..+|.++-+.++.++|
T Consensus       456 krai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  456 KRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999998754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.80  E-value=4.9e-08  Score=93.05  Aligned_cols=111  Identities=16%  Similarity=0.085  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHHHH--------
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHLVT--------KDYDRAEECFKRAIQSDPPDAEAL--------  475 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~~~--------GD~deAEe~feRALeLDPndAeAl--------  475 (540)
                      ..+++++|...|+++++.+|+++.   +++.+|.+++. .        |++++|.+.|++++..+|++..++        
T Consensus        82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~  160 (235)
T TIGR03302        82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY  160 (235)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            348999999999999999999887   68888888774 4        789999999999999999997553        


Q ss_pred             ---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCcccc
Q 009204          476 ---------SQYADFLWLVRKDLWAAEETYQQAMAAEPNS---SSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       476 ---------~NLA~~L~~~rGD~EEAee~feKALeLDPdn---peal~NLA~~L~~~GR~Et~~  527 (540)
                               ..+|.+++ .+|++++|+..|++++...|++   +.++..+|.++..+|+++++.
T Consensus       161 ~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       161 LRNRLAGKELYVARFYL-KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence                     23455544 4799999999999999997764   579999999999999998754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.79  E-value=6e-08  Score=109.80  Aligned_cols=107  Identities=10%  Similarity=-0.028  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+..|++++..+|....++.++|.++. ..|++++|+++|+++++++|+++.++..++.++. ..|++++|+.+
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~  105 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVK  105 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHH
Confidence            489999999999999999999999999999888 5999999999999999999999999999998765 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++++++.+|+++. +..+|.++..+|++++
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~  134 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWD  134 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHCCCHHH
Confidence            9999999999999 9999999999999764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.7e-08  Score=109.13  Aligned_cols=130  Identities=18%  Similarity=0.251  Sum_probs=115.5

Q ss_pred             ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 009204          393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--  470 (540)
Q Consensus       393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--  470 (540)
                      ..|||+-+-.++...-+   ..+.+.+++++..|+.+++..|+.++++.-+|.+|.. ++++++|+++|.+||++.|.  
T Consensus       421 i~L~pe~~~~~iQl~~a---~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqqFd~A~k~YD~ai~LE~~~~  496 (606)
T KOG0547|consen  421 ISLDPENAYAYIQLCCA---LYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQFDKAVKQYDKAIELEPREH  496 (606)
T ss_pred             hhcChhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHhHHHHHHHHHHHHhhccccc
Confidence            37788877777554322   3355789999999999999999999999999999995 99999999999999999999  


Q ss_pred             ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          471 ----DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       471 ----dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                          ++..+.+-|.++.++++|+.+|+..+++|+++||..-.++..+|.+..++|+.++|
T Consensus       497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence                88889999988888999999999999999999999999999999999999997653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=1.8e-08  Score=110.31  Aligned_cols=123  Identities=13%  Similarity=0.049  Sum_probs=105.5

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      ..||++--.|--+      -.-.++|++|..||+.||..+|+|..+|+-||..|.. ..+.++|+..|+|||++.|++..
T Consensus       427 ~~DpdvQ~~LGVL------y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR  499 (579)
T KOG1125|consen  427 KIDPDVQSGLGVL------YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVR  499 (579)
T ss_pred             CCChhHHhhhHHH------HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeee
Confidence            3577776655221      1223899999999999999999999999999999984 88999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPN----------SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPd----------npeal~NLA~~L~~~GR~E  524 (540)
                      +.+|+|+.+.. .|.|++|.++|..||.+.+.          +-.+|..|=.++...++.|
T Consensus       500 ~RyNlgIS~mN-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  500 VRYNLGISCMN-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             eehhhhhhhhh-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999998765 79999999999999998765          1247888889999999887

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=7.5e-08  Score=98.76  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR--KDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~r--GD~EEAee  494 (540)
                      .+.++-..-++..|+.||+|++-|.-||.+|. ..|+++.|...|++|++++|++++++..||.+++...  .+..+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            45677788899999999999999999999988 4999999999999999999999999999999877543  35788999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .+++|+++||+|..+++-||..++++|++++
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~~  245 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYAE  245 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence            9999999999999999999999999999874

>PLN02789 farnesyltranstransferase

Probab=98.73  E-value=8.5e-08  Score=99.23  Aligned_cols=144  Identities=10%  Similarity=-0.026  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhhchhhhhh--c--cCCHHHHHhcccccccccCCCCCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009204          374 DLWNSVLDEALRIQEESEY--R--ILDHETMQHFVTPVTVKLEPDDYM-DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH  448 (540)
Q Consensus       374 ~LW~~~L~eap~~q~~~~~--e--aLD~e~~~~lvapv~a~Le~d~~G-d~eeAe~lYqkALalDP~Np~allNLA~~L~  448 (540)
                      ..++.++..-.+.+.++..  .  .++|+....+.....+..   ..+ ++++++..+.++++.+|++..+|.+.+.++.
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~---~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE---ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH---HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            3555666554444444443  2  346666655544433321   224 6899999999999999999999999998877


Q ss_pred             HhcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          449 LVTKDY--DRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       449 ~~~GD~--deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                       ..|+.  +++..+++++|++||.+..+|.+.+.++.. .|++++|++++.++|+.||.|..+|.+.+.++...|+
T Consensus       118 -~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~  191 (320)
T PLN02789        118 -KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL  191 (320)
T ss_pred             -HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence             47763  788999999999999999999999987754 6889999999999999999999999999999887743

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.73  E-value=5.9e-08  Score=101.07  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +..-|..++ ..|++++|+++|++||+++|+++.++.++|.++. ..|++++|+..+++|+.++|+++.+++++|.++..
T Consensus         5 l~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            344577778 4999999999999999999999999999999876 47999999999999999999999999999999999


Q ss_pred             cCCCcc
Q 009204          520 TGGEET  525 (540)
Q Consensus       520 ~GR~Et  525 (540)
                      +|++++
T Consensus        83 lg~~~e   88 (356)
T PLN03088         83 LEEYQT   88 (356)
T ss_pred             hCCHHH
Confidence            999874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.73  E-value=1.3e-07  Score=94.81  Aligned_cols=105  Identities=25%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      ....+...++.....+|....++..+|.++.. .|++++|++.++++++++|+++.++..+|.+++. .|++++|+.+++
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~  172 (355)
T cd05804          95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME  172 (355)
T ss_pred             CchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            33444444444334455555555555555553 6666666666666666666666666666665543 556666666666


Q ss_pred             HHHHhCCCCHH----HHHHHHHHHHHcCCCc
Q 009204          498 QAMAAEPNSSS----YASKYASFLWNTGGEE  524 (540)
Q Consensus       498 KALeLDPdnpe----al~NLA~~L~~~GR~E  524 (540)
                      +++...|.++.    .+..+|.++..+|+++
T Consensus       173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             hhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            66666553322    2345666666666654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.72  E-value=2.5e-08  Score=82.04  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .+++++|+.+|+++++.+|.  +...++++|.+++. .|++++|.+++++ ++.+|.+...+..+|..++. .|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            58999999999999999995  46678888999995 9999999999999 99999999998889988765 78999999


Q ss_pred             HHHHHH
Q 009204          494 ETYQQA  499 (540)
Q Consensus       494 e~feKA  499 (540)
                      ++|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.72  E-value=9.7e-08  Score=87.80  Aligned_cols=102  Identities=12%  Similarity=0.042  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNN--PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~N--p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .+..+...+...++.++.+  ...++++|..+. ..|++++|+.+|++|+.+.|+.   +.++.++|.++. ..|++++|
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA   91 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKA   91 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHH
Confidence            3566666666665677666  567788998887 5999999999999999997763   458999998765 58999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      +.+|++|++++|.+...+.++|.++..+|
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.72  E-value=7.1e-08  Score=97.42  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |+-+.+..+..+++..+|.+..++..+|..... .|++.+|+..+++|.+++|+|.++|+.+|..|- +.|+.++|..-|
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay  157 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAY  157 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHH
Confidence            677788888889888899999999889998885 999999999999999999999999999998764 689999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .+|+++.|+++.+..|+|..|.-.|++++
T Consensus       158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~  186 (257)
T COG5010         158 RQALELAPNEPSIANNLGMSLLLRGDLED  186 (257)
T ss_pred             HHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence            99999999999999999999999999875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.70  E-value=1.7e-07  Score=78.41  Aligned_cols=87  Identities=16%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS---SSYA  510 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn---peal  510 (540)
                      +.+++..|..+.. .|++++|+++|+++++.+|++   +.++..+|.+++. .|++++|+.+|++++..+|++   +.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            4677889998884 999999999999999999987   5788899998764 789999999999999999986   6789


Q ss_pred             HHHHHHHHHcCCCcc
Q 009204          511 SKYASFLWNTGGEET  525 (540)
Q Consensus       511 ~NLA~~L~~~GR~Et  525 (540)
                      ..+|.++...|+.++
T Consensus        80 ~~~~~~~~~~~~~~~   94 (119)
T TIGR02795        80 LKLGMSLQELGDKEK   94 (119)
T ss_pred             HHHHHHHHHhCChHH
Confidence            999999999999764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.8e-07  Score=101.95  Aligned_cols=122  Identities=20%  Similarity=0.177  Sum_probs=105.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      +++|+.....-..++-   .-..|+|..|..+|.+||+.+|+|+.+|.|.|.++. ..|.+..|+.-.+.+|++||++..
T Consensus       352 ~~~pe~A~e~r~kGne---~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~k  427 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNE---AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIK  427 (539)
T ss_pred             hhChhHHHHHHHHHHH---HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHH
Confidence            4466665544443332   235699999999999999999999999999998777 699999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      +|..-|.++.. ..+|++|.+.|++|+++||++.++...|..++..+
T Consensus       428 gy~RKg~al~~-mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  428 AYLRKGAALRA-MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999998765 56899999999999999999999999999888764

>PLN02789 farnesyltranstransferase

Probab=98.68  E-value=6.4e-07  Score=92.79  Aligned_cols=107  Identities=12%  Similarity=-0.023  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD--LWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD--~EEAe  493 (540)
                      +.+++|...+.++|+++|++..+|...+.++.. .| ++++|+.+++++++.+|++..+|++.+.++.. .++  +++++
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHH
Confidence            577899999999999999999999999999884 77 68999999999999999999999999987654 454  37899


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .+++++++.||+|.++|.+.+.++..+|++++
T Consensus       129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789        129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999998764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.66  E-value=1.5e-07  Score=103.09  Aligned_cols=123  Identities=13%  Similarity=-0.008  Sum_probs=99.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV-------TKDYDRAEECFKRAIQS--DPPDAEALSQYADFLW  483 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~-------~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~  483 (540)
                      ..+.+++.+|..+|++|+++||+++.+|..++.++...       ..+.++|.+..++++.+  +|.++.+|..+|....
T Consensus       352 ~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~  431 (517)
T PRK10153        352 SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL  431 (517)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence            33456788999999999999999999998887755421       12456778888887775  8888988888887654


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------ccccCCCCccccC
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE-------TCFPLSSSQDDYN  537 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E-------t~~pl~~~~~~~~  537 (540)
                       ..|++++|..+|++|++++| +..++..+|.++...|+.+       +|+-++|...+|.
T Consensus       432 -~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        432 -VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             -hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence             57999999999999999999 5889999999999999965       5777888877763

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.65  E-value=5.9e-08  Score=75.75  Aligned_cols=56  Identities=23%  Similarity=0.400  Sum_probs=51.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      .|++++|+.+|+++++.+|+++.++..+|.++. .+|++++|+.+|+++++++|++|
T Consensus        10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            489999999999999999999999999999999 49999999999999999999986

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.63  E-value=5e-07  Score=83.75  Aligned_cols=89  Identities=16%  Similarity=0.182  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      +|..+.+++++|..+. ..|++++|..+|++|++++|+.   +.++.++|.++. ..|++++|+.+|++|++.+|+++..
T Consensus        31 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             HhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHH
Confidence            3456677899999888 4999999999999999988764   468999998776 4799999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 009204          510 ASKYASFLWNTGGE  523 (540)
Q Consensus       510 l~NLA~~L~~~GR~  523 (540)
                      +.++|.++..+|+.
T Consensus       109 ~~~lg~~~~~~g~~  122 (172)
T PRK02603        109 LNNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHHHcCCh
Confidence            99999999998874

>PRK11906 transcriptional regulator; Provisional

Probab=98.59  E-value=4.2e-07  Score=98.24  Aligned_cols=107  Identities=11%  Similarity=-0.014  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGV---AEEPNNPLLLLNYAQFLHLV--------TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV  485 (540)
Q Consensus       417 Gd~eeAe~lYqkAL---alDP~Np~allNLA~~L~~~--------~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~  485 (540)
                      ...++|..+|.+|+   ++||+++.+|..+|.++...        ..+..+|.++.++|+++||+|+.++..+|.+++. 
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-  350 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-  350 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence            34677788888888   88888888877777654321        2345677888888888888888888888876664 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .++++.|...|++|+.++|+.+.+++.+|.++...|+.+
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence            566888888888888888888888888888888888865

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=4.7e-07  Score=97.91  Aligned_cols=109  Identities=19%  Similarity=0.106  Sum_probs=101.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ...+.+++|+..++..++..|+|+..+...+.++. ..++.++|.+.+++|+.++|+.+....+||..|.+ .|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence            34588999999999999999999999999999988 49999999999999999999999999999998875 78999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .++++.+..+|+++..|.-||..+-.+|+..
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            9999999999999999999999999999864

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.57  E-value=5.2e-07  Score=102.78  Aligned_cols=134  Identities=18%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .|+++..+-+.-   +.. .-..|++++|+..+.++|+++|.++.+|..+|.++.+ +||.++|...+-.|-.++|+|.+
T Consensus       134 ~l~~~l~~ll~e---AN~-lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e  208 (895)
T KOG2076|consen  134 KLAPELRQLLGE---ANN-LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYE  208 (895)
T ss_pred             ccCHHHHHHHHH---HHH-HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChH
Confidence            556666554422   111 1234999999999999999999999999999999885 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------ccccCCCCc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE-------TCFPLSSSQ  533 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E-------t~~pl~~~~  533 (540)
                      .|..++.. ....|.+++|.-||.+||+++|.+-...+..+.++.++|++.       ..+++.||.
T Consensus       209 ~W~~ladl-s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~  274 (895)
T KOG2076|consen  209 LWKRLADL-SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV  274 (895)
T ss_pred             HHHHHHHH-HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence            99999985 566889999999999999999999999999999999999965       366676643

>TIGR00540 hemY_coli hemY protein

Probab=98.55  E-value=4.8e-07  Score=95.04  Aligned_cols=106  Identities=10%  Similarity=0.109  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHcCC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLL----LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA--EALSQYADFLWLVRKD  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~a----llNLA~~L~~~~GD~deAEe~feRALeLDPndA--eAl~NLA~~L~~~rGD  488 (540)
                      ..|++++|...++++++..|++...    +..+.  .. ..++.+++++.++++++.+|+++  ..+..||.+++. .|+
T Consensus       275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l-~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~  350 (409)
T TIGR00540       275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RL-KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGE  350 (409)
T ss_pred             HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hc-CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-ccc
Confidence            4589999999999999999999853    22222  23 36888999999999999999999  889999998865 789


Q ss_pred             HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          489 LWAAEETYQ--QAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       489 ~EEAee~fe--KALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++|.++|+  ++++.+|++.. +..+|.+++.+|+.++
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAE  388 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence            999999999  68888998766 5599999999999775

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=2.1e-07  Score=72.75  Aligned_cols=61  Identities=26%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      .|++++|+++|+++++.+|++.+++..+|.++.. .|++++|++++++++..+|+++.++.-
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            4555555555555555555555555555554443 455555555555555555555444433

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.54  E-value=5.2e-07  Score=90.39  Aligned_cols=108  Identities=17%  Similarity=-0.008  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++++|..+++++++.+|++..++.. +..+..   ..++.+.+.+.++.....+|++..++..+|.++. ..|++++|
T Consensus        56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A  133 (355)
T cd05804          56 AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRA  133 (355)
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHH
Confidence            489999999999999999999988764 333331   2444555555555544677888888888887765 58999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++.++++++++|+++.++..+|++++..|++++
T Consensus       134 ~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e  166 (355)
T cd05804         134 EEAARRALELNPDDAWAVHAVAHVLEMQGRFKE  166 (355)
T ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999999764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.53  E-value=2.2e-07  Score=72.65  Aligned_cols=63  Identities=30%  Similarity=0.364  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .|++++|...|++++..+|+|..+++.+|.++. ..|++++|+..+++++..+|+++.++.-++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            489999999999999999999999999999999 499999999999999999999988776554

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.53  E-value=1.6e-07  Score=73.72  Aligned_cols=53  Identities=26%  Similarity=0.355  Sum_probs=50.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDP  469 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDP  469 (540)
                      .+++++|+.+|.+||+.+|+++.+++++|.++.. +| ++++|+++|++||+++|
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            4899999999999999999999999999999884 99 79999999999999998

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.52  E-value=6.8e-07  Score=102.90  Aligned_cols=108  Identities=13%  Similarity=0.009  Sum_probs=63.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|+++.|...|+++++.+|+++.+...++.++. ..|+.++|+.++++++.-+|.....+..+|.++. ..|++++|++
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aie  123 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALA  123 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence            3466666666666666666666433335555555 3666666666666666323333333333344433 3566666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .|+++++.+|+++.++..++.++...++.+
T Consensus       124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~  153 (822)
T PRK14574        124 LWQSSLKKDPTNPDLISGMIMTQADAGRGG  153 (822)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhcCCHH
Confidence            666666666666666666666666666654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=3.4e-07  Score=99.32  Aligned_cols=106  Identities=20%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .+..+-...|.+|..+||+|+++|+..|++++ ..+++++|..-|++|++++|+++-++..++.++|. .++++++...|
T Consensus       374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~F  451 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTF  451 (606)
T ss_pred             hccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            45566677777777777777777777777777 47777777777777777777777777777776665 45677777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +.++..-|+-++.+.-+|.+|..+++.+
T Consensus       452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  452 EEAKKKFPNCPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence            7777777777777777777777777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.50  E-value=4.5e-07  Score=97.90  Aligned_cols=69  Identities=17%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204          432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWLVRKDLWAAEETYQQAMAA  502 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~~rGD~EEAee~feKALeL  502 (540)
                      .+|+++.+++|+|..|+ ..|+|++|+.+|++||+++|+++++   |+|+|.+|. ..|++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            47999999999999999 4999999999999999999999965   999998765 578999999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.49  E-value=1e-06  Score=85.53  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT----------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---  485 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~----------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---  485 (540)
                      |+.|.+.|+.++..||.|++.+++.|.+|.+ .          .-+++|+.-|++||.++|+..+++.++|.++...   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            6889999999999999999999999987753 3          2367789999999999999999999999987542   


Q ss_pred             -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          486 -------RKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       486 -------rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                             ..-+++|.++|++|...+|+|..++-.|-.
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                   123889999999999999999988766654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.49  E-value=7.5e-07  Score=70.52  Aligned_cols=67  Identities=27%  Similarity=0.328  Sum_probs=50.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009204          445 QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       445 ~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NL  513 (540)
                      .++. ..+++++|+++++++++++|+++.++..+|.++.. .|++++|.+.|+++++.+|+++.+..-.
T Consensus         3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3455 47888888888888888888888888888877654 6778888888888888888877765443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.49  E-value=1.8e-06  Score=92.20  Aligned_cols=116  Identities=22%  Similarity=0.251  Sum_probs=102.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +++++|+.++++..+.+|+   +..-+|.++.. .++..+|.+.++++|+.+|.+++.+...+.+|.. +++++.|+++.
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA  257 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA  257 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            6899999999999999986   44557888774 8899999999999999999999999999998865 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc------cccCCCCccccC
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET------CFPLSSSQDDYN  537 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et------~~pl~~~~~~~~  537 (540)
                      ++|+.+.|++-..|+.||.+|...|+++.      +.|..+..+.|-
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            99999999999999999999999999983      567666666554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.48  E-value=1.4e-06  Score=95.56  Aligned_cols=90  Identities=16%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAE--EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALal--DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .+..++....++++++  +|.++.+|..+|..+. ..|++++|..+|++|++++| +..+|..+|.++. ..|++++|++
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~-~~G~~~eA~~  474 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE-LKGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH-HcCCHHHHHH
Confidence            4567788888888775  8888999999988777 59999999999999999999 5889999998765 5899999999


Q ss_pred             HHHHHHHhCCCCHHH
Q 009204          495 TYQQAMAAEPNSSSY  509 (540)
Q Consensus       495 ~feKALeLDPdnpea  509 (540)
                      +|++|+.++|.++.+
T Consensus       475 ~~~~A~~L~P~~pt~  489 (517)
T PRK10153        475 AYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHhcCCCCchH
Confidence            999999999998864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.48  E-value=2.6e-06  Score=86.17  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLW  490 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~E  490 (540)
                      ++|++|...|++.++..|++   +.+++.+|.+++ ..|++++|..+|+++++..|++   ++++..+|.++. ..|+++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~  234 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTA  234 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHH
Confidence            78999999999999999998   579999999999 5999999999999999988875   778888898765 479999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 009204          491 AAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       491 EAee~feKALeLDPdnpeal  510 (540)
                      +|.++|+++++..|+...+-
T Consensus       235 ~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHHH
Confidence            99999999999999987653

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=1.2e-06  Score=94.68  Aligned_cols=114  Identities=9%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             cCCHHHHHhccccccccc------CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204          394 ILDHETMQHFVTPVTVKL------EPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS  467 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~L------e~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL  467 (540)
                      .+||+....+-.......      ..+...+..+|.++-++|+++||.|+.++..+|.++.. .++++.|...|+||+.+
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L  367 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIH  367 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhc
Confidence            566666655543322111      12345678899999999999999999999999998884 88899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          468 DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       468 DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      +|+++.+++.+|.++. ..|+.++|.+++++|++++|...-+
T Consensus       368 ~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        368 STDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             CCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhHH
Confidence            9999999999998765 5799999999999999999976543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=7.8e-07  Score=97.65  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHHc----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Q 009204          416 YMDYFRTDLLYQMGVAE----EPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal----DP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD  488 (540)
                      ++.|.+|..+|+.++..    .+.-+   ..++|+|.++. +.+.+++|+.+|++||.+.|.++.++...|.++. ..|+
T Consensus       427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgn  504 (611)
T KOG1173|consen  427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGN  504 (611)
T ss_pred             HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcC
Confidence            45566666666666532    22211   13556666555 4666666666666666666666666666665443 3556


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L  517 (540)
                      ++.|+++|.||+.++|++..+-.-|+.++
T Consensus       505 ld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  505 LDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            66666666666666666655544444443

>TIGR00540 hemY_coli hemY protein

Probab=98.39  E-value=3.7e-06  Score=88.39  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-EALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-eAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .|++++|++...++.+..|+....+.-.|.++.. +|++++|.++|+++.+..|++. .+...++.++. ..|++++|.+
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHH
Confidence            4889999999999998888877777777777774 8999999999999998888885 45555676655 4788999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .+++.++.+|+++.++.-++.++..+|+.++
T Consensus       175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~  205 (409)
T TIGR00540       175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA  205 (409)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999998763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.37  E-value=4.1e-06  Score=87.99  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|+.++|...++++++. |.++.+..-|+.+   ..++.++|.+..++.++.+|+|+..+..+|.++.. .+++++|.+
T Consensus       275 ~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~  349 (398)
T PRK10747        275 ECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASL  349 (398)
T ss_pred             HCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            348899999999999995 4466666666653   36899999999999999999999999999998764 788999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++.+|++.. +..++.++.++|+.++
T Consensus       350 ~le~al~~~P~~~~-~~~La~~~~~~g~~~~  379 (398)
T PRK10747        350 AFRAALKQRPDAYD-YAWLADALDRLHKPEE  379 (398)
T ss_pred             HHHHHHhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence            99999999999765 4478999999999775

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5.4e-06  Score=85.30  Aligned_cols=94  Identities=21%  Similarity=0.213  Sum_probs=83.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..+++..|...|++|+++.|+|++++..||.+++...  .+..+|.+.|++||++||+|..++..||..+++ .|||.+|
T Consensus       168 ~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A  246 (287)
T COG4235         168 ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEA  246 (287)
T ss_pred             HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHH
Confidence            3489999999999999999999999999999887433  356889999999999999999999999988775 7999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q 009204          493 EETYQQAMAAEPNSSSY  509 (540)
Q Consensus       493 ee~feKALeLDPdnpea  509 (540)
                      ...+++.++..|.+...
T Consensus       247 ~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         247 AAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHHhcCCCCCch
Confidence            99999999998876554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.34  E-value=7.7e-06  Score=73.99  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~  489 (540)
                      .++...+...+++.++.+|+.   ..+.+.+|..++. .|++++|...|++++...|+.   +.+...+|.++.. .|++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence            478889999999999999998   4677778998884 999999999999999988666   3477788988764 7899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          490 WAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      ++|+..+++ +.-.+-.+.++.-+|.++...|+.++|
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            999999966 444556677889999999999998864

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.32  E-value=2.7e-06  Score=67.32  Aligned_cols=63  Identities=27%  Similarity=0.361  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .+++++|..+++++++++|+++.++..+|.++. ..|++++|.+.|+++++.+|+++.+....+
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            489999999999999999999999999999999 599999999999999999999998865443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.8e-06  Score=89.39  Aligned_cols=105  Identities=18%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEP----NN-----------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP----~N-----------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      .|+|..|...|++|+..=.    .+           ..+++|+|.++. ++++|.+|+++..++|+++|+|..+++.-|.
T Consensus       221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~  299 (397)
T KOG0543|consen  221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQ  299 (397)
T ss_pred             hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence            3789999999999887522    11           126889998766 7999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++.. .|+|+.|...|++|++++|+|..+...+..+.....+
T Consensus       300 A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  300 ALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            8865 7999999999999999999999998888776655444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.31  E-value=5.9e-06  Score=95.35  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+|+.++..++.++. ..++.++|++.+++++..+|++... ..++.++. ..++..+|++
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~-~~~~~~~AL~  190 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR-ATDRNYDALQ  190 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH-hcchHHHHHH
Confidence            4589999999999999999999999999988777 4999999999999999999996665 44454443 3566777999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .|+++++++|++.+++..|..++.+.|-.+
T Consensus       191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence            999999999999999999999999988754

>PRK15331 chaperone protein SicA; Provisional

Probab=98.29  E-value=1.2e-05  Score=77.10  Aligned_cols=114  Identities=11%  Similarity=0.089  Sum_probs=96.2

Q ss_pred             ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      .-++++++..+-+..-   ...++|++++|+..|+-....||.|++.+.+||.++. .+++|++|+..|-.|..++++|+
T Consensus        30 ~gis~~~le~iY~~Ay---~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         30 HGIPQDMMDGLYAHAY---EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             hCCCHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence            4667777776644221   1346799999999999999999999999999999877 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      ...+..|..+. ..|+.++|..+|+.++. .|.+......
T Consensus       106 ~p~f~agqC~l-~l~~~~~A~~~f~~a~~-~~~~~~l~~~  143 (165)
T PRK15331        106 RPVFFTGQCQL-LMRKAAKARQCFELVNE-RTEDESLRAK  143 (165)
T ss_pred             CccchHHHHHH-HhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence            99999998765 57899999999999999 6877665543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3.8e-06  Score=91.79  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|+|+.|..+|-.||.++|.|.-.|.|-...+. ..|+|++|.+--.+.++++|+=+.+|...|..+. ..|+|++|+..
T Consensus        15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~a   92 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILA   92 (539)
T ss_pred             cccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHH
Confidence            489999999999999999999999999888777 6999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L  517 (540)
                      |.+.++.+|+|.....+++.+.
T Consensus        93 y~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   93 YSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999998887

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.28  E-value=2.2e-06  Score=94.18  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE--------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal--------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NL  478 (540)
                      ..+++++|..+|++|+.+        +|.-+.++.|+|.+|+ ..|++++|+.++++|++|        .|.-+..+.++
T Consensus       253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence            458999999999999986        4555568999999988 699999999999999997        23334456667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCccccc
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAA--------EPNSSSYASKYASFLWNTGGEETCFP  528 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeL--------DPdnpeal~NLA~~L~~~GR~Et~~p  528 (540)
                      +.++ ..++++++|+.+|++++++        +|.-+.+..+||..|..+|+++++.+
T Consensus       332 ~~~~-~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  332 AAIL-QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             HHHH-HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence            7654 5689999999999999986        22335679999999999999987654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=2.9e-06  Score=89.03  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CHHHHHHHHHHHHHHcCCHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP--P-DAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDP--n-dAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ++.+-|..+|++.|.+--.+|+++.|+|.+|. ..+++|-++..|+||+...-  + -+++|+|+|.+... -||+.-|.
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~  415 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK  415 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence            67899999999999999999999999999888 59999999999999999753  2 26789999987654 68999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|+-|+..||++.+++.|||.+-.+.|+.+.
T Consensus       416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~  447 (478)
T KOG1129|consen  416 RCFRLALTSDAQHGEALNNLAVLAARSGDILG  447 (478)
T ss_pred             HHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence            99999999999999999999999999999774

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=2e-06  Score=88.63  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      |.=+. ..++|.+|+..|.+||+++|+|+..|.|.|.+|.. .|.++.|++--+.||.+||.+..+|..+|.+|..+|++
T Consensus        88 GN~~m-~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   88 GNKLM-KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHH-HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            44455 48999999999999999999999999999998875 68999999999999999999999999999999999998


Q ss_pred             cc
Q 009204          524 ET  525 (540)
Q Consensus       524 Et  525 (540)
                      ++
T Consensus       166 ~~  167 (304)
T KOG0553|consen  166 EE  167 (304)
T ss_pred             HH
Confidence            74

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.26  E-value=7.8e-06  Score=74.05  Aligned_cols=88  Identities=22%  Similarity=0.106  Sum_probs=69.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHc
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP---DAEALSQYADFLWLVR  486 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPn---dAeAl~NLA~~L~~~r  486 (540)
                      .|..|+.++|+.+|++|++.....   ..++.++|..+. ..|++++|+..+++++...|+   +..+...++..++. .
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~   88 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-L   88 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-C
Confidence            356688899999999998875444   457888888888 489999999999999888787   77777777776664 6


Q ss_pred             CCHHHHHHHHHHHHHh
Q 009204          487 KDLWAAEETYQQAMAA  502 (540)
Q Consensus       487 GD~EEAee~feKALeL  502 (540)
                      |++++|++.+..++.-
T Consensus        89 gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   89 GRPKEALEWLLEALAE  104 (120)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8889999988888763

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.26  E-value=3.3e-06  Score=95.24  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH--
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE--  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee--  494 (540)
                      ++-++|.-++.+|-.++|..+..|+-.|..+. ..|.+++|.+.|.-|+.+||++......+|.++.+ .|+..-|+.  
T Consensus       664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~  741 (799)
T KOG4162|consen  664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRS  741 (799)
T ss_pred             CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHH
Confidence            44455555666666666655555555555544 35666666666666666666666666666655443 444444444  


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .+..|+++||.++++|+++|.++..+|+.+
T Consensus       742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            566666666666666666666666666543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.25  E-value=7.7e-06  Score=89.93  Aligned_cols=149  Identities=19%  Similarity=0.176  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc-----CCCC---HHHHHH
Q 009204          371 EELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE-----EPNN---PLLLLN  442 (540)
Q Consensus       371 ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal-----DP~N---p~allN  442 (540)
                      +.+.+..+++.-..+     -+....+++...+.+....   ....+++++|+.+|++++++     -++|   +..+.|
T Consensus       301 EA~~~~e~Al~I~~~-----~~~~~~~~v~~~l~~~~~~---~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n  372 (508)
T KOG1840|consen  301 EAEEYCERALEIYEK-----LLGASHPEVAAQLSELAAI---LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN  372 (508)
T ss_pred             HHHHHHHHHHHHHHH-----hhccChHHHHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            445555555544443     1235566777777554333   23458999999999999986     2334   568889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCH
Q 009204          443 YAQFLHLVTKDYDRAEECFKRAIQSD--------PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA-------EPNSS  507 (540)
Q Consensus       443 LA~~L~~~~GD~deAEe~feRALeLD--------PndAeAl~NLA~~L~~~rGD~EEAee~feKALeL-------DPdnp  507 (540)
                      ||.+++ .+|++++|+++|++||++.        +.....++++|..+. ..+++.+|.+.|.+++.+       .|+-.
T Consensus       373 l~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~  450 (508)
T KOG1840|consen  373 LAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVT  450 (508)
T ss_pred             HHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence            999888 6999999999999999973        445668899998775 578899999999999886       34555


Q ss_pred             HHHHHHHHHHHHcCCCcccccC
Q 009204          508 SYASKYASFLWNTGGEETCFPL  529 (540)
Q Consensus       508 eal~NLA~~L~~~GR~Et~~pl  529 (540)
                      ..+.|||.+|..+|++|++..+
T Consensus       451 ~~~~nL~~~Y~~~g~~e~a~~~  472 (508)
T KOG1840|consen  451 YTYLNLAALYRAQGNYEAAEEL  472 (508)
T ss_pred             HHHHHHHHHHHHcccHHHHHHH
Confidence            6799999999999999976543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.24  E-value=6e-06  Score=93.28  Aligned_cols=133  Identities=17%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHhhchhh---hhh--c--cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          371 EELDLWNSVLDEALRIQEE---SEY--R--ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNY  443 (540)
Q Consensus       371 ee~~LW~~~L~eap~~q~~---~~~--e--aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNL  443 (540)
                      -.+.||--..+--.+.+..   ..+  |  -++|.....+--.+   +.....|.+++|...|..|+.+||+++.....+
T Consensus       648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G---~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al  724 (799)
T KOG4162|consen  648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRG---LLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL  724 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhh---HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3477887666655553322   112  1  22444444442211   223466999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHH--HHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204          444 AQFLHLVTKDYDRAEE--CFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS  508 (540)
Q Consensus       444 A~~L~~~~GD~deAEe--~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe  508 (540)
                      |.++.+ .|+..-|+.  .+..|+++||.++++|+++|.++ +.+||.++|.++|..|+++++.+|-
T Consensus       725 a~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  725 AELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHHHHHHhhccCCCc
Confidence            999885 998888888  99999999999999999999975 5689999999999999999998774

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=4.7e-06  Score=90.16  Aligned_cols=107  Identities=22%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |++++|...|++||..|....++++|.|..+. .+|++++|+++|-+.-.+=-++++++..++.+| +...+..+|+++|
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiy-e~led~aqaie~~  581 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIY-ELLEDPAQAIELL  581 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhhCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999888889999999999975 5678999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .++..+-|++|.++..||.+|-+-|+.-.
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksq  610 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQEGDKSQ  610 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence            99999999999999999999988888654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.23  E-value=5.2e-06  Score=95.56  Aligned_cols=129  Identities=22%  Similarity=0.238  Sum_probs=97.3

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD--  471 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd--  471 (540)
                      .|||.....+++++.+.+...+...+..+..++.+|...+|+||.++..+|..++ ..|||..+...+.-|+...-+.  
T Consensus       227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~  305 (1018)
T KOG2002|consen  227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSI  305 (1018)
T ss_pred             hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHH
Confidence            5677777888888777777777788889999999999999999998888888766 4788888777777777754333  


Q ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCc
Q 009204          472 -AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEE  524 (540)
Q Consensus       472 -AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~E  524 (540)
                       ++.++++|..++ .+||+++|..||.++++.+|++ ...++.+|..+...|+++
T Consensus       306 ~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle  359 (1018)
T KOG2002|consen  306 KAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE  359 (1018)
T ss_pred             HHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence             345777777655 4677888888888887777777 555667777777777765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.23  E-value=1.3e-05  Score=84.20  Aligned_cols=89  Identities=10%  Similarity=0.031  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLL-NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~all-NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .|++++|..+|++|.+.+|++..+.. ..+.++. ..|++++|.+.++++++.+|+++.++..++.++. ..||+++|++
T Consensus       131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~  208 (398)
T PRK10747        131 RGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLD  208 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHH
Confidence            35555555555555555554432221 1133333 2555555555555555555555555554444433 2345555555


Q ss_pred             HHHHHHHhCCCC
Q 009204          495 TYQQAMAAEPNS  506 (540)
Q Consensus       495 ~feKALeLDPdn  506 (540)
                      .+.+..+..+.+
T Consensus       209 ~l~~l~k~~~~~  220 (398)
T PRK10747        209 ILPSMAKAHVGD  220 (398)
T ss_pred             HHHHHHHcCCCC
Confidence            555555444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.22  E-value=1.1e-06  Score=72.35  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          451 TKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      +|++++|+.+|+++++.+|.  +...+.++|.+++. .|++++|++++++ ...+|.+...++-+|.++..+|++++|-
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            68999999999999999995  56677788998875 7899999999999 8899999999999999999999998753

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.2e-05  Score=88.52  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      +.+++|+.+|++||.+.|.++.+|...|.++. .+|+++.|+++|.+||.++|++.
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccH
Confidence            44555555555555555555555555554444 25555555555555555555553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.16  E-value=2.4e-06  Score=68.74  Aligned_cols=65  Identities=23%  Similarity=0.314  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS----D---PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA  502 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeL----D---PndAeAl~NLA~~L~~~rGD~EEAee~feKALeL  502 (540)
                      -+.++.++|.++. ..|++++|+.+|++|+++    .   |.-+.++.++|.++. ..|++++|+++|++|+++
T Consensus         4 ~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            3568899999998 499999999999999976    2   223568899998765 589999999999999986

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.12  E-value=2.5e-05  Score=79.18  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSY  509 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npea  509 (540)
                      +....++.|..+....|++++|+..|++.++..|++   +.+++.+|.+++. .|++++|+.+|++++...|+   .+++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            456777777766434799999999999999999999   5899999998775 79999999999999998887   5778


Q ss_pred             HHHHHHHHHHcCCCcc
Q 009204          510 ASKYASFLWNTGGEET  525 (540)
Q Consensus       510 l~NLA~~L~~~GR~Et  525 (540)
                      ++.+|.++..+|++++
T Consensus       220 l~klg~~~~~~g~~~~  235 (263)
T PRK10803        220 MFKVGVIMQDKGDTAK  235 (263)
T ss_pred             HHHHHHHHHHcCCHHH
Confidence            9999999999999874

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.09  E-value=6.3e-06  Score=92.74  Aligned_cols=108  Identities=15%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .++|.++.++++..++++|-....|+++|.+.. ..++++.|.++|.+.+.++|++.++|+|++..+.. .++-.+|-..
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~  575 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK  575 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence            378888888888888888888888888888776 48888888889999999999998888888887654 5778888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.+|++-+-++...|.||-++....|..++
T Consensus       576 l~EAlKcn~~~w~iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  576 LKEALKCNYQHWQIWENYMLVSVDVGEFED  605 (777)
T ss_pred             HHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence            888888888888888888888888888764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=3.1e-05  Score=78.96  Aligned_cols=105  Identities=16%  Similarity=0.212  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |++++|+++|...|+.||.|..++----.++. .+|+.-+|++.+..-++.=++|.++|..++.+|.. .|++++|.-||
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl  177 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL  177 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence            66777777777777777777666553322334 46666677777777777777777777777776553 56777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      ++.+-..|.++.++..||.+++-+|..
T Consensus       178 EE~ll~~P~n~l~f~rlae~~Yt~gg~  204 (289)
T KOG3060|consen  178 EELLLIQPFNPLYFQRLAEVLYTQGGA  204 (289)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            777777777777777777777766653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=2.6e-05  Score=84.55  Aligned_cols=113  Identities=22%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC----
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD----  488 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD----  488 (540)
                      ....|+.++|..+|.+.-.+--++.++++.+|.+|. ...+..+|+++|.++..+=|+||.++..||.+| .+.||    
T Consensus       534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dly-dqegdksqa  611 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLY-DQEGDKSQA  611 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh-hcccchhhh
Confidence            345588888888888776666677888888888777 488888888888888888888888888888753 44443    


Q ss_pred             ------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          489 ------------------------------LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       489 ------------------------------~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                                                    .++|+.||++|--+.|+....-.-.|.++.+.|.|..+|
T Consensus       612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence                                          688999999999999999998899999999999998765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.05  E-value=6.3e-05  Score=68.23  Aligned_cols=87  Identities=20%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSYAS  511 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npeal~  511 (540)
                      .+++++|.++- ..|+.++|+.+|++|++...+.   ..++..+|..+. ..|++++|+..+++++...|+   +.....
T Consensus         2 ~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            57889999877 6999999999999999986555   458889999876 579999999999999999898   888899


Q ss_pred             HHHHHHHHcCCCccc
Q 009204          512 KYASFLWNTGGEETC  526 (540)
Q Consensus       512 NLA~~L~~~GR~Et~  526 (540)
                      -+|.++...|+++++
T Consensus        80 f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   80 FLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHCCCHHHH
Confidence            999999999998864

>PRK15331 chaperone protein SicA; Provisional

Probab=98.02  E-value=1.5e-05  Score=76.42  Aligned_cols=92  Identities=14%  Similarity=-0.056  Sum_probs=82.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204          432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~  511 (540)
                      +.++.-+..+.+|.-++. .|++++|+..|+-...+||.+++.+..||.++ +.+++|++|+..|..|..+++++|...+
T Consensus        32 is~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            345555677788888885 99999999999999999999999999999875 5678999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 009204          512 KYASFLWNTGGEET  525 (540)
Q Consensus       512 NLA~~L~~~GR~Et  525 (540)
                      ..|.++..+|+.+.
T Consensus       110 ~agqC~l~l~~~~~  123 (165)
T PRK15331        110 FTGQCQLLMRKAAK  123 (165)
T ss_pred             hHHHHHHHhCCHHH
Confidence            99999999999763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.00011  Score=75.20  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK--DLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG--D~EEAee  494 (540)
                      |.-.+|++..-.-+...++|.++|..++.+|. ..|+|++|.-||++.+-+.|.++..+..||.+++...|  +++-|.+
T Consensus       134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            66779999999999999999999999999988 59999999999999999999999999999998876544  6888999


Q ss_pred             HHHHHHHhCCCCHHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA  514 (540)
                      ||.+|++++|.+...++.+-
T Consensus       213 yy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  213 YYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             HHHHHHHhChHhHHHHHHHH
Confidence            99999999998887765543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.96  E-value=2.1e-05  Score=83.18  Aligned_cols=100  Identities=22%  Similarity=0.180  Sum_probs=90.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .+|.|++|+.||-++++.+|.|+..+.|.|.+|+ +.+.|..|+.-...||.+|..+..+|...+..-.. .|...+|.+
T Consensus       109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EAKk  186 (536)
T KOG4648|consen  109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEAKK  186 (536)
T ss_pred             hccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            4589999999999999999999999999999988 59999999999999999999999999999887654 688999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~  516 (540)
                      -++.++++.|++-+..-.|+.+
T Consensus       187 D~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  187 DCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             hHHHHHhhCcccHHHHHHHHHh
Confidence            9999999999988876665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.91  E-value=5.7e-05  Score=87.29  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNN-PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~N-p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEA  492 (540)
                      |+|++|..+|.++++.+|++ ...++.+|+++. ..|+++.|+.+|++.++..|++.+++.-+|.++...   ....++|
T Consensus       321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a  399 (1018)
T KOG2002|consen  321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA  399 (1018)
T ss_pred             ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence            45555555555555555555 444555555544 255555555555555555555555555555433221   0123455


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L  517 (540)
                      ..++.++++..|.+.++|..+|.+|
T Consensus       400 ~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  400 SNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHH
Confidence            5555555555555555555555443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.91  E-value=8.9e-05  Score=86.34  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=86.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------------------DPPDAE  473 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------------------DPndAe  473 (540)
                      +..|++++|.+.|+++|+.||+|+.+++|||.+|.. . ++++|++++++|++.                    +|++.+
T Consensus       127 dk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d  204 (906)
T PRK14720        127 AKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD  204 (906)
T ss_pred             HHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence            345899999999999999999999999999999885 6 999999999999873                    566555


Q ss_pred             HHHHHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          474 ALSQYAD-------------------FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       474 Al~NLA~-------------------~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .+..+-.                   -++...+++++++++++.+++.+|+|..++..++.+|.  +.|.
T Consensus       205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~  272 (906)
T PRK14720        205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYK  272 (906)
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHcc
Confidence            4222111                   12334568999999999999999999999999999987  4443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.90  E-value=4.6e-05  Score=88.62  Aligned_cols=101  Identities=10%  Similarity=-0.000  Sum_probs=58.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-------------------HHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-------------------EALS  476 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-------------------eAl~  476 (540)
                      .+++++|.+.++.+++.+|+...+|+.+|.+++ ..+++.+|...  +++.+-+.+.                   .++.
T Consensus        44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         44 ENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence            356666666666666666666666666666444 35555444443  4444444443                   5666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       477 NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      .+|.+ +...|+.++|...|++++++||+|+.++.+||.+|...
T Consensus       121 ~LA~~-Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        121 TLAEA-YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             HHHHH-HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            66653 34456666666666666666666666666666666555

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.89  E-value=4e-05  Score=85.59  Aligned_cols=159  Identities=14%  Similarity=0.169  Sum_probs=114.1

Q ss_pred             CChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhccccccc----ccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          368 MNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTV----KLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNY  443 (540)
Q Consensus       368 ~~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a----~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNL  443 (540)
                      +++.|-.++.+++.---.=|-..+...++ .+++.+..-++.    -|...-.|+.++|..+.+.++..|+...-.|..|
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~-~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~   81 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIK-QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL   81 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence            45567778888876544433322221111 122222111110    1112234888999999999999999988889889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      |.++. ..++|++|+++|+.|+.++|+|-.+|..++.+- .+.+|++.....-.+.+++.|.+-..|..+|..+.-.|.+
T Consensus        82 gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ-~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y  159 (700)
T KOG1156|consen   82 GLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ-IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY  159 (700)
T ss_pred             HHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            98666 589999999999999999999999999888754 4567899888888999999999888899999988888888


Q ss_pred             cccccC
Q 009204          524 ETCFPL  529 (540)
Q Consensus       524 Et~~pl  529 (540)
                      ..+.++
T Consensus       160 ~~A~~i  165 (700)
T KOG1156|consen  160 KMALEI  165 (700)
T ss_pred             HHHHHH
Confidence            876654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.88  E-value=1.9e-05  Score=88.94  Aligned_cols=102  Identities=13%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             HHHHHHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204          425 LYQMGVAE-EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE  503 (540)
Q Consensus       425 lYqkALal-DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD  503 (540)
                      +|++|+++ +-.++.+...+|...+ ..++|.+|.++++++++++|-....|+++|.+.++ .+++.+|.++|.+++.++
T Consensus       472 ~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  472 LYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcC
Confidence            44444443 1223333344444344 36899999999999999999999999999998765 678999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCccccc
Q 009204          504 PNSSSYASKYASFLWNTGGEETCFP  528 (540)
Q Consensus       504 Pdnpeal~NLA~~L~~~GR~Et~~p  528 (540)
                      |++.++|.|++..|...|+..++|-
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHH
Confidence            9999999999999999999876543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.86  E-value=2.8e-05  Score=57.68  Aligned_cols=41  Identities=32%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .++..+|.++.. .|++++|+++|+++|+.+|+|++++..||
T Consensus         2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            456666766663 77777777777777777777777766665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.85  E-value=9.6e-05  Score=66.89  Aligned_cols=83  Identities=25%  Similarity=0.337  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      ..|++++|...|++++...|++   +.+.+.+|.++.. .|++++|+..+++ +.-.+-.+.++...|.++. ..|++++
T Consensus        60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~-~~g~~~~  136 (145)
T PF09976_consen   60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIYL-AQGDYDE  136 (145)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHH-HCCCHHH
Confidence            4599999999999999988765   3577889999884 9999999999966 4445566778888898876 4899999


Q ss_pred             HHHHHHHHH
Q 009204          492 AEETYQQAM  500 (540)
Q Consensus       492 Aee~feKAL  500 (540)
                      |...|++|+
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=3.9e-05  Score=82.38  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH------------HHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ------------YADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N------------LA~~L  482 (540)
                      ..+++++|...--..+++|+.|.++++--|.+++ ...+.++|..+|+++|.++|++.+.-..            -|.-+
T Consensus       181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             hcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            3488999999999999999999999998898888 6999999999999999999999765332            22222


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCcc
Q 009204          483 WLVRKDLWAAEETYQQAMAAEPNSSS----YASKYASFLWNTGGEET  525 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDPdnpe----al~NLA~~L~~~GR~Et  525 (540)
                      + ..|+|.+|.++|..||.+||++..    .+.|.|.+...+||..+
T Consensus       260 f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  260 F-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             h-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence            3 258899999999999999997654    58899999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.00017  Score=75.89  Aligned_cols=122  Identities=16%  Similarity=0.119  Sum_probs=94.1

Q ss_pred             CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204          396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP  470 (540)
Q Consensus       396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPn  470 (540)
                      .+.+.+++.+...+.      .+|++|+..-++..++.|++-.     .+..||+.+. ...+.++|...+++|++.||+
T Consensus       140 a~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~  212 (389)
T COG2956         140 AEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKK  212 (389)
T ss_pred             hHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCcc
Confidence            345666665544443      6789999999888888776543     3444555444 367889999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCcc
Q 009204          471 DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       471 dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~~GR~Et  525 (540)
                      +..+-..+|.+.. .+|+|++|++.++.+++.||++ +++...|..+|.++|+.++
T Consensus       213 cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         213 CVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             ceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9998888998765 5789999999999999999975 4678888889999998764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.84  E-value=0.00015  Score=71.67  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVA-EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD--AEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALa-lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd--AeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++.+|..+|++++. +..+|+..++.+|+..+. .+++..|...+++..+.+|..  ++.+..+|..|. ..|+++.|
T Consensus       102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~A  179 (251)
T COG4700         102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADA  179 (251)
T ss_pred             hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhH
Confidence            4999999999999998 578899999999999995 999999999999999999865  556777888775 47899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +..|+.|+.-.|+ +.+...|+..|..+||.++
T Consensus       180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhH
Confidence            9999999999987 6778889999999998764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.81  E-value=0.00026  Score=77.12  Aligned_cols=87  Identities=22%  Similarity=0.109  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .++.++|.+.+++++.++|+.+.+..+||++|. ..|++++|+.++++.+.-+|+|+..|..||..+.. .|+..+|...
T Consensus       353 ~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~~A  430 (484)
T COG4783         353 ANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEALLA  430 (484)
T ss_pred             cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHHHH
Confidence            478999999999999999999999999999999 59999999999999999999999999999997654 4555555555


Q ss_pred             HHHHHHhCC
Q 009204          496 YQQAMAAEP  504 (540)
Q Consensus       496 feKALeLDP  504 (540)
                      +-++..++-
T Consensus       431 ~AE~~~~~G  439 (484)
T COG4783         431 RAEGYALAG  439 (484)
T ss_pred             HHHHHHhCC
Confidence            555544443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.80  E-value=3.9e-05  Score=83.22  Aligned_cols=58  Identities=16%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCcc
Q 009204          467 SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY---ASKYASFLWNTGGEET  525 (540)
Q Consensus       467 LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea---l~NLA~~L~~~GR~Et  525 (540)
                      .+|+++++++|+|..|+. .|+|++|+.+|++|++++|+++++   |+|+|.+|..+|+.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE  130 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK  130 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence            589999999999998875 799999999999999999999965   9999999999999764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.79  E-value=7.4e-05  Score=83.55  Aligned_cols=106  Identities=13%  Similarity=0.042  Sum_probs=98.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      ++|....+..++.|+..|++++.+.-.|..+. ..|+.++|..+-+.++..|+....-|.-||.+. ..-++|++|+.+|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~-R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ-RSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHH-hhhhhHHHHHHHH
Confidence            78999999999999999999999999999888 599999999999999999999999999999754 4567899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +.|+.++|+|-.+|..++.+..++|+++
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999876

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.76  E-value=0.00034  Score=69.84  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHH----
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLL---LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLV----  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~al---lNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~----  485 (540)
                      .|++++|...|++++...|..+.+.   +++|.+++ ..+++++|..+|++.++.+|+++.   +++.+|......    
T Consensus        45 ~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~  123 (243)
T PRK10866         45 DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA  123 (243)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence            4899999999999999999988765   78899989 599999999999999999999865   566666432111    


Q ss_pred             ----------cCC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCCc
Q 009204          486 ----------RKD---LWAAEETYQQAMAAEPNSSSY-----------------ASKYASFLWNTGGEE  524 (540)
Q Consensus       486 ----------rGD---~EEAee~feKALeLDPdnpea-----------------l~NLA~~L~~~GR~E  524 (540)
                                ..|   ..+|+..|++.++.-|+...+                 -+..|.+|++.|++.
T Consensus       124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~  192 (243)
T PRK10866        124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV  192 (243)
T ss_pred             hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence                      012   356889999999999988753                 244566777777764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.71  E-value=3.2e-05  Score=55.37  Aligned_cols=31  Identities=32%  Similarity=0.485  Sum_probs=14.3

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          461 FKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       461 feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      |++||+++|+++.+|++||.++. ..|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhh
Confidence            44444444444444444444433 23444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.70  E-value=3.4e-05  Score=55.21  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009204          425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEE  459 (540)
Q Consensus       425 lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe  459 (540)
                      +|++||+++|+|+.+|++||.+|.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4899999999999999999999994 999999973

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.67  E-value=0.00051  Score=79.10  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=90.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ++.|+.+++......|-.++|.|.+.|.-+|.... .+|.+++|.-||.|||+++|.+-......+.++ +..|++.+|.
T Consensus       184 EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am  261 (895)
T KOG2076|consen  184 EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAM  261 (895)
T ss_pred             HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHH
Confidence            46699999999999999999999999999999777 599999999999999999999999999999854 5689999999


Q ss_pred             HHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCC
Q 009204          494 ETYQQAMAAEPNSS-----SYASKYASFLWNTGGE  523 (540)
Q Consensus       494 e~feKALeLDPdnp-----eal~NLA~~L~~~GR~  523 (540)
                      +.|+++++++|...     +.-..+++.+...++.
T Consensus       262 ~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  262 ETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999211     1223445555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00016  Score=77.78  Aligned_cols=108  Identities=19%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW  490 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np----~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E  490 (540)
                      ..|++.+|.++|..||.+||+|.    .+|.|.|.+.. ..|+.++|+.--+.|+.|||....++..-|..+. ..++++
T Consensus       261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l-~le~~e  338 (486)
T KOG0550|consen  261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHL-ALEKWE  338 (486)
T ss_pred             hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH-HHHHHH
Confidence            55999999999999999999965    46788888877 5999999999999999999999999999998765 468899


Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009204          491 AAEETYQQAMAAEPN--SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       491 EAee~feKALeLDPd--npeal~NLA~~L~~~GR~E  524 (540)
                      +|++.|++|+++.-+  .-..+......|.+..|.+
T Consensus       339 ~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD  374 (486)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence            999999999998766  4455566666666555644

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.67  E-value=9.4e-05  Score=54.85  Aligned_cols=43  Identities=19%  Similarity=0.082  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      |+++..+|.++. ..|++++|+++|+++++.+|+++.+|..||.
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467888999876 4899999999999999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00012  Score=77.26  Aligned_cols=114  Identities=13%  Similarity=0.120  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +++++|.++|+.+++++|.|.++..-.|.-++ ..++.+-|..||+|.|++--.+++.+.|+|..++ ..++++-++..|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHH
Confidence            67888889999999999999888877777777 5888899999999999998889999999987665 457799999999


Q ss_pred             HHHHHhCC---CCHHHHHHHHHHHHHcCCCc---ccccCCCC
Q 009204          497 QQAMAAEP---NSSSYASKYASFLWNTGGEE---TCFPLSSS  532 (540)
Q Consensus       497 eKALeLDP---dnpeal~NLA~~L~~~GR~E---t~~pl~~~  532 (540)
                      ++|+...-   .-+++|+|+|.+....|+.-   .||-+.=.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT  423 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence            99988743   35678999999998888864   47776533

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.00033  Score=71.83  Aligned_cols=89  Identities=22%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL-WAAEETY  496 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~-EEAee~f  496 (540)
                      .+.+|.-.|++.....|.++.+++.+|.+... +|++++|++.+++|++.+|++++++.|+..+.. ..|+. +++.+++
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~-~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSL-HLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HhCCChhHHHHHH
Confidence            34444444444433334444444444444442 444444544444444444444444444443322 22322 3444444


Q ss_pred             HHHHHhCCCCHH
Q 009204          497 QQAMAAEPNSSS  508 (540)
Q Consensus       497 eKALeLDPdnpe  508 (540)
                      .+....+|+++.
T Consensus       260 ~qL~~~~p~h~~  271 (290)
T PF04733_consen  260 SQLKQSNPNHPL  271 (290)
T ss_dssp             HHCHHHTTTSHH
T ss_pred             HHHHHhCCCChH
Confidence            444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.56  E-value=0.0022  Score=53.76  Aligned_cols=104  Identities=25%  Similarity=0.330  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEP---NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-DAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP---~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn-dAeAl~NLA~~L~~~rGD~EE  491 (540)
                      .+++++|...|++++..+|   .....+..++..+. ..+++++|...+.+++...+. ...++..++..+. ..+++++
T Consensus       143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  220 (291)
T COG0457         143 LGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEE  220 (291)
T ss_pred             cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHH
Confidence            3667777777777766666   34444445554444 366777777777777777777 5666666666543 3556777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      |..++.+++...|.....+..++..+...+
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         221 ALEYYEKALELDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             HHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence            777777777777776566666666665444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.53  E-value=0.00044  Score=80.49  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW-------------  483 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~-------------  483 (540)
                      .+...|...|-+++++||..+.++.-+|.+|.. --|..+|.++|++|.++||.++++....+..+.             
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            346778888888888888888888888888775 448888888888888888888876655443221             


Q ss_pred             ----------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          484 ----------------------LVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ----------------------~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                                            ...++.-.|+..|+.|++.+|.+...|..+|.+|...||+..+
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehH
Confidence                                  1125678899999999999999999999999999999999853

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.53  E-value=0.00015  Score=84.24  Aligned_cols=150  Identities=15%  Similarity=0.023  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHhhchh-hhhh----ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          372 ELDLWNSVLDEALRIQE-ESEY----RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQF  446 (540)
Q Consensus       372 e~~LW~~~L~eap~~q~-~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~  446 (540)
                      |-..|.-+...+.+.-+ +...    ..+|+.....|...+...-   +..+..+|.++|++|..+||.+.++....+..
T Consensus       459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYr---d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adt  535 (1238)
T KOG1127|consen  459 ENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYR---DSDDMKRAKKCFDKAFELDATDAEAAAASADT  535 (1238)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence            34445555555544221 1111    2457777777766654442   23378999999999999999999887765554


Q ss_pred             HHH-----------------------------------hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          447 LHL-----------------------------------VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       447 L~~-----------------------------------~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      +.+                                   ..+++-+|...|+-|++.+|+|.+.|..+|.+|.. .|++..
T Consensus       536 yae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~  614 (1238)
T KOG1127|consen  536 YAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSH  614 (1238)
T ss_pred             hhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceeh
Confidence            331                                   23556678999999999999999999999998764 899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++.|.||..++|.+....+.-|......|+|++
T Consensus       615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999999999999999999864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.0011  Score=67.96  Aligned_cols=94  Identities=21%  Similarity=0.196  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~  489 (540)
                      .|+|..|+..|+.-|+..|+.+   .+++.||..++ .+|++++|...|.++++-.|++   ++++..+|..+.. .|+.
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~  231 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNT  231 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCH
Confidence            4789999999999999988864   68888999888 5999999999999999987766   5789999987764 6789


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 009204          490 WAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~  511 (540)
                      ++|-..|++.++.-|+.+.+-.
T Consensus       232 d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         232 DEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHH
Confidence            9999999999999998876643

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.51  E-value=0.0018  Score=71.74  Aligned_cols=151  Identities=22%  Similarity=0.231  Sum_probs=100.9

Q ss_pred             hHHHHHHH-HHHHHHhhchhhhhh-c-----cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          370 KEELDLWN-SVLDEALRIQEESEY-R-----ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLN  442 (540)
Q Consensus       370 ~ee~~LW~-~~L~eap~~q~~~~~-e-----aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allN  442 (540)
                      .+|.-|+. .++.++.+.++++.. +     -+|.-.....-+-...+     .|++++|+..|+..|..||+|...|..
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~k-----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~   77 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLK-----LGRKEEAEKIYRELIDRNPDNYDYYRG   77 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            35666655 888888888877655 2     45666666664433333     499999999999999999999999988


Q ss_pred             HHHHHHHhc----CCHHHHHHHHHH----------------------------------HHH------------------
Q 009204          443 YAQFLHLVT----KDYDRAEECFKR----------------------------------AIQ------------------  466 (540)
Q Consensus       443 LA~~L~~~~----GD~deAEe~feR----------------------------------ALe------------------  466 (540)
                      |..++....    .+.+.-.+.|++                                  .|.                  
T Consensus        78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~  157 (517)
T PF12569_consen   78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE  157 (517)
T ss_pred             HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh
Confidence            888762111    122221222221                                  111                  


Q ss_pred             -----------------c------------CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          467 -----------------S------------DPPDAE--ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       467 -----------------L------------DPndAe--Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                                       .            +|....  +++.+|. ++...|++++|++++++||+..|..++.+...|.
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq-hyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kar  236 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ-HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                             0            111111  2233454 3445789999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009204          516 FLWNTGGEETC  526 (540)
Q Consensus       516 ~L~~~GR~Et~  526 (540)
                      +|.+.|++++|
T Consensus       237 ilKh~G~~~~A  247 (517)
T PF12569_consen  237 ILKHAGDLKEA  247 (517)
T ss_pred             HHHHCCCHHHH
Confidence            99999997653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.50  E-value=0.00013  Score=77.36  Aligned_cols=98  Identities=21%  Similarity=0.187  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |++.+|...|..|+..||++-.+++-.|.+|. .+|+-.-|+.-+.+.|++.|++..+....|.+++. +|.+++|+.-|
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF  129 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF  129 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence            78999999999999999999999999998887 59999999999999999999999999999988765 78899999999


Q ss_pred             HHHHHhCCCCHH---HHHHHHHH
Q 009204          497 QQAMAAEPNSSS---YASKYASF  516 (540)
Q Consensus       497 eKALeLDPdnpe---al~NLA~~  516 (540)
                      ++.+.-+|.+-.   +...++.+
T Consensus       130 ~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  130 DQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HHHHhcCCCcchhHHHHHHHHhH
Confidence            999999995543   44444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00039  Score=75.12  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------------------------------hcCCHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---------------------------------VTKDYDRAEECFKR  463 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---------------------------------~~GD~deAEe~feR  463 (540)
                      |++++|+..|+++.-+||.+...+--||.++..                                 ..+++..|+.+-++
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            556666666666666666655555545544332                                 24566778888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          464 AIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       464 ALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+.+|++..++..-|.++. ..++.++|+..|+.|+.+.|..-+.+..|-+.|...|+..+|
T Consensus       326 ~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            88888888888888887665 467888888888888888888888888888888888887664

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.49  E-value=0.0003  Score=72.11  Aligned_cols=106  Identities=15%  Similarity=0.014  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G--D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .++++.|.+.++++-+.+.+...+...-|++... .|  .+.+|...|+...+.-+..+..++.+|.+.. .+|++++|+
T Consensus       144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe  221 (290)
T PF04733_consen  144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAE  221 (290)
T ss_dssp             TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHH
Confidence            4899999999999998888766655555555442 44  5899999999987777889999999998665 589999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +.+++|+..+|++++++.|++.+...+|+.
T Consensus       222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  222 ELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999987

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00036  Score=71.01  Aligned_cols=84  Identities=23%  Similarity=0.164  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .+|+.|+.+|-+||.++|..+..+.|-|..+. ..++++.++.--++|++++||...+++.+|..+.+. ..+++|+..+
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~~~eaI~~L  101 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KGYDEAIKVL  101 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-ccccHHHHHH
Confidence            57899999999999999999999999998777 599999999999999999999999999999987764 5599999999


Q ss_pred             HHHHHh
Q 009204          497 QQAMAA  502 (540)
Q Consensus       497 eKALeL  502 (540)
                      .+|..+
T Consensus       102 qra~sl  107 (284)
T KOG4642|consen  102 QRAYSL  107 (284)
T ss_pred             HHHHHH
Confidence            999765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.47  E-value=0.00074  Score=72.49  Aligned_cols=82  Identities=24%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      ++-.+|.+.+.++|+.+|++..++...|.+|. ..++++.|+++.++|+++.|++-+.|..|+.+|. ..||++.|+..+
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi-~~~d~e~ALlaL  291 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYI-QLGDFENALLAL  291 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hcCCHHHHHHHH
Confidence            45689999999999999999999999999999 5999999999999999999999999999999876 589999999777


Q ss_pred             HHHH
Q 009204          497 QQAM  500 (540)
Q Consensus       497 eKAL  500 (540)
                      ..+-
T Consensus       292 Ns~P  295 (395)
T PF09295_consen  292 NSCP  295 (395)
T ss_pred             hcCc
Confidence            6443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.46  E-value=0.001  Score=62.97  Aligned_cols=89  Identities=18%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----EALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----eAl~NLA~~L~~~rGD~EE  491 (540)
                      .|+.+.|.+.|.++|.+-|.++.+|+|.|+.+.. +|+.++|++-+++|+++.-+..    .++...|.+ +..+|+-++
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~g~dd~  133 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLLGNDDA  133 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHhCchHH
Confidence            3899999999999999999999999999999885 9999999999999999975543    356666764 566899999


Q ss_pred             HHHHHHHHHHhCCCC
Q 009204          492 AEETYQQAMAAEPNS  506 (540)
Q Consensus       492 Aee~feKALeLDPdn  506 (540)
                      |..-|+.|-++-...
T Consensus       134 AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  134 ARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHhHHHHHHhCCHH
Confidence            999999998875543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.0012  Score=66.23  Aligned_cols=96  Identities=23%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      |+|++|..-|+.||..=|..+.     +|.|.|.++. +++..+.|++-..+||+++|.+-.++...|.+| .....|++
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeay-ek~ek~ee  186 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAY-EKMEKYEE  186 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH-HhhhhHHH
Confidence            8999999999999999887553     6778887777 699999999999999999999999999888765 45688999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q 009204          492 AEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA  514 (540)
                      |++-|++.++++|..-++.-..+
T Consensus       187 aleDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  187 ALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHH
Confidence            99999999999999887765444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0007  Score=72.57  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..++|.+|+....++|.++|+|.-+++--|.++.. .|+++.|+..|++|++++|+|.++...+..+--..+...++..+
T Consensus       269 Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk  347 (397)
T KOG0543|consen  269 KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKK  347 (397)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44789999999999999999999999999999995 99999999999999999999999999988765444444555678


Q ss_pred             HHHHHHHhCC
Q 009204          495 TYQQAMAAEP  504 (540)
Q Consensus       495 ~feKALeLDP  504 (540)
                      .|.+.+..-+
T Consensus       348 ~y~~mF~k~~  357 (397)
T KOG0543|consen  348 MYANMFAKLA  357 (397)
T ss_pred             HHHHHhhccc
Confidence            8888887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.39  E-value=0.0013  Score=63.31  Aligned_cols=108  Identities=22%  Similarity=0.227  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHc---
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLVR---  486 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~r---  486 (540)
                      .|+|.+|...|++.+...|..+   .+.+.+|..++ ..|++++|...|++-++..|+++.   +++..|...+...   
T Consensus        18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~   96 (203)
T PF13525_consen   18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI   96 (203)
T ss_dssp             CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence            4999999999999999988754   67888999999 599999999999999999999864   6777776554321   


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCc
Q 009204          487 -------KDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEE  524 (540)
Q Consensus       487 -------GD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~E  524 (540)
                             +...+|...|++.+..-|+.+.+-                 +..|.++++.|.+.
T Consensus        97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~  158 (203)
T PF13525_consen   97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK  158 (203)
T ss_dssp             H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred             hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence                   224689999999999999987542                 44566777766654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.38  E-value=0.0004  Score=70.12  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      -|..|-+.-|.--|.++|+++|+-|.+++-+|..+.. .|+++.|.+.|.-.+++||.+--++.|.|..++ ..|++.-|
T Consensus        75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA  152 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA  152 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence            3455778889999999999999999999999987774 999999999999999999999999999998766 47999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q 009204          493 EETYQQAMAAEPNSSSY  509 (540)
Q Consensus       493 ee~feKALeLDPdnpea  509 (540)
                      .+-+.+--+.||++|.-
T Consensus       153 q~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         153 QDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             HHHHHHHHhcCCCChHH
Confidence            99999999999999863

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.36  E-value=0.00068  Score=72.07  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      +|.+..-++.+|.-+. ..|++..|+..|..|++.||++..+++..|.+++ ..|+-..|+.-+.+.+++.|+..-+...
T Consensus        34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            5677788888999888 5999999999999999999999999999999876 4789999999999999999999999999


Q ss_pred             HHHHHHHcCCCccc
Q 009204          513 YASFLWNTGGEETC  526 (540)
Q Consensus       513 LA~~L~~~GR~Et~  526 (540)
                      .|++|+.+|++|+|
T Consensus       112 Rg~vllK~Gele~A  125 (504)
T KOG0624|consen  112 RGVVLLKQGELEQA  125 (504)
T ss_pred             hchhhhhcccHHHH
Confidence            99999999998853

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.35  E-value=0.00044  Score=47.26  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD  471 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPnd  471 (540)
                      .++..+|.+++ ..|++++|+++|++|++++|+|
T Consensus         2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555 3666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.35  E-value=0.0019  Score=60.77  Aligned_cols=93  Identities=18%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHcCC-
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLVRKD-  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~rGD-  488 (540)
                      .|+|++|...|+......|..+   .+.+.++.+++ ..+++++|...+++-|+++|+++.   +++..|...+.+ .+ 
T Consensus        23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~-~~~  100 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ-DEG  100 (142)
T ss_pred             hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH-hhh
Confidence            4899999999999999988755   57888999999 599999999999999999999976   455555544432 22 


Q ss_pred             --------------HHHHHHHHHHHHHhCCCCHHHH
Q 009204          489 --------------LWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       489 --------------~EEAee~feKALeLDPdnpeal  510 (540)
                                    ..+|...|++.++.-|++..+-
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                          6789999999999999987654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.35  E-value=0.00032  Score=48.53  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP  470 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPn  470 (540)
                      .+|+++|.++. .+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            45666666655 366666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.34  E-value=0.0011  Score=62.79  Aligned_cols=81  Identities=21%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS----SYASKYASFLWN  519 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp----eal~NLA~~L~~  519 (540)
                      |..+.+ .|+++.|++.|.+||.+-|..+.+|+|.+..+. ..|+.++|+.-+.+|+++.-+..    .++...|.+|..
T Consensus        50 ~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            555664 999999999999999999999999999999764 57999999999999999975543    357889999999


Q ss_pred             cCCCccc
Q 009204          520 TGGEETC  526 (540)
Q Consensus       520 ~GR~Et~  526 (540)
                      +|+.|.+
T Consensus       128 ~g~dd~A  134 (175)
T KOG4555|consen  128 LGNDDAA  134 (175)
T ss_pred             hCchHHH
Confidence            9998753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.34  E-value=0.00026  Score=71.43  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      .++..|.+|- ..|-.+-|..-|.+||.+.|+-|++++.+|..+ ...|+++.|.+.|.-.+++||.+-.++.|.|..++
T Consensus        67 l~fERGvlYD-SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl-~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          67 LLFERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHhcchhh-hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHH-HhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            3444454333 577778888889999999999999999888754 56899999999999999999999999999999999


Q ss_pred             HcCCCc------ccccCCCCccccC
Q 009204          519 NTGGEE------TCFPLSSSQDDYN  537 (540)
Q Consensus       519 ~~GR~E------t~~pl~~~~~~~~  537 (540)
                      .-||++      ..|.-++|++.|.
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHH
Confidence            999986      3777778877663

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.29  E-value=0.0022  Score=64.13  Aligned_cols=85  Identities=12%  Similarity=-0.000  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 009204          435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEAL---SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS---  508 (540)
Q Consensus       435 ~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl---~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe---  508 (540)
                      ..+..++..|..+.. .|++++|++.|++.+...|+.+.+.   .++|..++. .+++++|+.+|++.++++|+++.   
T Consensus        30 ~~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            356677778888884 9999999999999999999997764   778888775 78999999999999999998764   


Q ss_pred             HHHHHHHHHHHcC
Q 009204          509 YASKYASFLWNTG  521 (540)
Q Consensus       509 al~NLA~~L~~~G  521 (540)
                      +++.+|......+
T Consensus       108 a~Y~~g~~~~~~~  120 (243)
T PRK10866        108 VLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHhhhhcc
Confidence            5666676654443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.27  E-value=0.0087  Score=50.20  Aligned_cols=88  Identities=25%  Similarity=0.319  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN-NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~-Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .++++.|...+.+++...|. ....+.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+++++|..
T Consensus       180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  257 (291)
T COG0457         180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALE  257 (291)
T ss_pred             hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHH
Confidence            47899999999999999999 6899999999888 4999999999999999999998888888888777 6788999999


Q ss_pred             HHHHHHHhCCC
Q 009204          495 TYQQAMAAEPN  505 (540)
Q Consensus       495 ~feKALeLDPd  505 (540)
                      .+.+++..+|.
T Consensus       258 ~~~~~~~~~~~  268 (291)
T COG0457         258 ALEKALELDPD  268 (291)
T ss_pred             HHHHHHHhCcc
Confidence            99999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.24  E-value=0.00025  Score=57.09  Aligned_cols=52  Identities=17%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204          415 DYMDYFRTDLLYQMGVAE----EPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQS  467 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal----DP~N---p~allNLA~~L~~~~GD~deAEe~feRALeL  467 (540)
                      ..|++++|+.+|++|+.+    .+++   +.++.++|.++. ..|++++|+++|++|+++
T Consensus        17 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   17 ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            459999999999999976    2232   457889999888 599999999999999986

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.23  E-value=0.0019  Score=65.40  Aligned_cols=99  Identities=24%  Similarity=0.323  Sum_probs=63.3

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHH
Q 009204          409 VKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLV  485 (540)
Q Consensus       409 a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~  485 (540)
                      +.+|-...++.+.|...|+.+++..|++...|..|..++. ..+|.+.|...|++++..-|.+.   .+|..+..+-.. 
T Consensus        42 A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~-  119 (280)
T PF05843_consen   42 ALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK-  119 (280)
T ss_dssp             HHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-
Confidence            3444334466666777777777777777777777777777 37777777777777777655555   456666655433 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpea  509 (540)
                      .|+++.....++++.++-|.+...
T Consensus       120 ~Gdl~~v~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  120 YGDLESVRKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred             cCCHHHHHHHHHHHHHHhhhhhHH
Confidence            467777777777777777765443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.0026  Score=67.14  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..++++|...+.+|++.||++..+-..+|.+... .|+|++|.+.++++++.||++ ++++..|...| ...|+.++.+.
T Consensus       193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~  270 (389)
T COG2956         193 SSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLN  270 (389)
T ss_pred             hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHH
Confidence            3688999999999999999999999999999884 999999999999999999998 45676676654 56899999999


Q ss_pred             HHHHHHHhCCCCHHH
Q 009204          495 TYQQAMAAEPNSSSY  509 (540)
Q Consensus       495 ~feKALeLDPdnpea  509 (540)
                      ++.++.+..++..-.
T Consensus       271 fL~~~~~~~~g~~~~  285 (389)
T COG2956         271 FLRRAMETNTGADAE  285 (389)
T ss_pred             HHHHHHHccCCccHH
Confidence            999999988875443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.0011  Score=67.90  Aligned_cols=95  Identities=23%  Similarity=0.288  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSYASKY  513 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd---npeal~NL  513 (540)
                      .++-|.-++ ..|||+.|+..|..-|+.-|+.   +++++.||..++. +|++++|...|..+++-.|+   -|+.++.+
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            666677777 5999999999999999999988   5789999998875 79999999999999998765   56889999


Q ss_pred             HHHHHHcCCCcc-cccCCCCcccc
Q 009204          514 ASFLWNTGGEET-CFPLSSSQDDY  536 (540)
Q Consensus       514 A~~L~~~GR~Et-~~pl~~~~~~~  536 (540)
                      |.++.++|+.|+ |..+..-..+|
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHC
Confidence            999999999886 76665444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.18  E-value=0.002  Score=71.44  Aligned_cols=85  Identities=28%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      +++-+|+.+. ..|++++|.++.++||+..|..++.|..-|.++ ...|++++|.++++.|..+|+.+-.+-...+.++.
T Consensus       196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~Karil-Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARIL-KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            3345577665 488888888888888888888888888888876 45788888888888888888888888888888888


Q ss_pred             HcCCCcc
Q 009204          519 NTGGEET  525 (540)
Q Consensus       519 ~~GR~Et  525 (540)
                      +.|+.++
T Consensus       274 Ra~~~e~  280 (517)
T PF12569_consen  274 RAGRIEE  280 (517)
T ss_pred             HCCCHHH
Confidence            8888764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.18  E-value=0.0011  Score=64.77  Aligned_cols=69  Identities=17%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          454 YDRAEECFKRAIQSDPPDAEALSQYADFLWLV---------RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       454 ~deAEe~feRALeLDPndAeAl~NLA~~L~~~---------rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++.|.+.++.+...||.|++++++.|.+|.+.         ..-+++|+.-|++|+.++|+..+++.++|++|..++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999987654         1247889999999999999999999999999998876

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.16  E-value=0.001  Score=45.42  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      |+++.++|.+++. .|++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            5688999998775 799999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.15  E-value=0.00051  Score=74.91  Aligned_cols=104  Identities=15%  Similarity=0.083  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      ..|+.|...|-+||.++|+++..+.|-+.++. +.+++..|+.=+.+||+++|....+|..-|.++. ..+.+.+|..-|
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l   95 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDL   95 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHH
Confidence            67999999999999999999999999997666 6999999999999999999999999998888765 468899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++...+.|+++.+...+..+-....+
T Consensus        96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   96 EKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            99999999999987776665544433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.13  E-value=0.0024  Score=72.26  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      ++.++|.++++++|+..|+...+|..+|+++.+ +++.+.|.+.|.+.++.=|+..-.|..++.+- +..|.+-+|...+
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il  742 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL  742 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence            556666666666666666666666666666663 66666666666666666666666666666543 3345666677777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ++|.-.+|+++..|...-.+-.+.|..+
T Consensus       743 drarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  743 DRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            7776667777666666666655666543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0018  Score=70.15  Aligned_cols=99  Identities=16%  Similarity=0.091  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ....++..|.-+-+++|..+|++..++.--|.++.. .|+.++|.-.|+.|+.+.|-+-+.|..|-..|. ..|+..||.
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL-A~~~~kEA~  388 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL-AQKRFKEAN  388 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hhchHHHHH
Confidence            345789999999999999999999999999999885 999999999999999999999999998877665 478899999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHH
Q 009204          494 ETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA  514 (540)
                      -.-+.++..-|+++..+--+|
T Consensus       389 ~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  389 ALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHHHHhhcchhhhhhhc
Confidence            999999999999998876654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0037  Score=68.93  Aligned_cols=97  Identities=16%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      -..+-..+|+.|+...+.|..+|.+|..++. +.+.+.+-...|.++|..+|++++.|..-|.-.+...-..+.|...|.
T Consensus        86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            3445577999999999999999999999877 577799999999999999999999999877767765555999999999


Q ss_pred             HHHHhCCCCHHHHHHHHH
Q 009204          498 QAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       498 KALeLDPdnpeal~NLA~  515 (540)
                      ++++.+|+++..|..|-.
T Consensus       165 rgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHhhcCCCChHHHHHHHH
Confidence            999999999998765543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.05  E-value=0.00068  Score=71.27  Aligned_cols=66  Identities=24%  Similarity=0.445  Sum_probs=60.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      ...|..++|..+|+.|++++|++++++..+|++... .++.-+|..||-+||.++|.+.+++.|.+.
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            345899999999999999999999999999999885 799999999999999999999999888665

>PLN03077 Protein ECB2; Provisional

Probab=97.04  E-value=0.0039  Score=71.53  Aligned_cols=106  Identities=11%  Similarity=0.067  Sum_probs=86.7

Q ss_pred             CCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE---EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal---DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      ..|.+++|..+|++..+.   .| +...|..+..+|. ..|++++|++.+++. .+.|+ +.+|..+-..+ ...++.+.
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~  675 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVEL  675 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHH
Confidence            458899999999998854   45 4567777888888 499999999999874 46665 56666666554 45788999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+...+++++++|+++.++..++++|...|+.++
T Consensus       676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            9999999999999999999999999999999764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.03  E-value=0.0012  Score=45.69  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      +.+|.++|.++. .+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence            468899999776 5799999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.01  E-value=0.0064  Score=68.95  Aligned_cols=107  Identities=11%  Similarity=0.083  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|+...|...+.+|++.+|++.++|+.--.+.+ ...++++|..+|.+|-...|. ..+|..++.+.+. .+..++|++
T Consensus       596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~-en~e~eraR~llakar~~sgT-eRv~mKs~~~er~-ld~~eeA~r  672 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF-ENDELERARDLLAKARSISGT-ERVWMKSANLERY-LDNVEEALR  672 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH-hhhHHHHHH
Confidence            3477888888888888888888888876555556 377888888888888876654 4567777777664 577888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +++++++.-|+..-.|..+|.++-+.++.+
T Consensus       673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  673 LLEEALKSFPDFHKLWLMLGQIEEQMENIE  702 (913)
T ss_pred             HHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence            888888888888888888888887777755

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.99  E-value=0.0025  Score=64.58  Aligned_cols=109  Identities=20%  Similarity=0.295  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +..+.|...|.+|++..+-...+|..+|.+-+...+|.+.|...|+++++.-|.+.+.|..|..++.. .+|.+.|...|
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf   93 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            44789999999999777778899999999866446777779999999999999999999999998875 68999999999


Q ss_pred             HHHHHhCCCCH---HHHHHHHHHHHHcCCCccc
Q 009204          497 QQAMAAEPNSS---SYASKYASFLWNTGGEETC  526 (540)
Q Consensus       497 eKALeLDPdnp---eal~NLA~~L~~~GR~Et~  526 (540)
                      ++++..-|...   .+|..+..+=...|+.+.+
T Consensus        94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v  126 (280)
T PF05843_consen   94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESV  126 (280)
T ss_dssp             HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999877655   5788888888888876643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.99  E-value=0.0057  Score=65.67  Aligned_cols=105  Identities=16%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|++++|.+..+++++..-+.. +..-++.  . ..+|...=++..++.++.+|++|..+..+|.+++. .+.+.+|.+
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~  349 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--L-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASE  349 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccChh-HHHHHhh--c-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHH
Confidence            45889999999999999765333 3322332  2 47889999999999999999999999999997764 678999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+.|++..|.. +.+.-+|+++-++|+.+.
T Consensus       350 ~leaAl~~~~s~-~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         350 ALEAALKLRPSA-SDYAELADALDQLGEPEE  379 (400)
T ss_pred             HHHHHHhcCCCh-hhHHHHHHHHHHcCChHH
Confidence            999999998874 456678999999998763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.89  E-value=0.0076  Score=64.73  Aligned_cols=85  Identities=20%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.++...=++..++.++..|++|.++..+|.+|+ +.+.+.+|..+|+.||...|... .+..+|.++ ...|+.++|.+
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~-~~~g~~~~A~~  382 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSAS-DYAELADAL-DQLGEPEEAEQ  382 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH-HHcCChHHHHH
Confidence            3477788899999999999999999999999988 69999999999999999988554 566788875 46899999999


Q ss_pred             HHHHHHHh
Q 009204          495 TYQQAMAA  502 (540)
Q Consensus       495 ~feKALeL  502 (540)
                      .+++++.+
T Consensus       383 ~r~e~L~~  390 (400)
T COG3071         383 VRREALLL  390 (400)
T ss_pred             HHHHHHHH
Confidence            99999854

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.87  E-value=0.0027  Score=66.88  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=62.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          443 YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       443 LA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      .|.-.+ ..|+.++|...|+.|++++|++++++..+|.|.- ..++.-+|-.||-+|+.++|.|.+++.|.+.
T Consensus       122 ~A~~~~-~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  122 AAGRSR-KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHH-hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344455 5999999999999999999999999999999864 4578999999999999999999999887664

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.87  E-value=0.0095  Score=67.92  Aligned_cols=110  Identities=19%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP-----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np-----~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      ..|++++|..+++++++..|...     .++..+|..+. ..|++++|+.++++++.+....      ..++.++|.+++
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            35899999999999998655432     34566777777 5999999999999999864322      235566777765


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPN--------SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPd--------npeal~NLA~~L~~~GR~Et~  526 (540)
                       ..|++++|++++++++.+...        ....+..+|.+++..|++++|
T Consensus       543 -~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  592 (903)
T PRK04841        543 -AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA  592 (903)
T ss_pred             -HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence             489999999999999986321        233456788899999998754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.81  E-value=0.011  Score=56.89  Aligned_cols=83  Identities=19%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS---Y  509 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe---a  509 (540)
                      .+..++..|..++. .|++++|++.|++.+...|+.   +.++..+|..++. .|++++|+..|++.++..|+++.   +
T Consensus         4 ~~~~lY~~a~~~~~-~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQ-QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            45678888998885 999999999999999998876   4578888988775 78999999999999999998764   5


Q ss_pred             HHHHHHHHHHc
Q 009204          510 ASKYASFLWNT  520 (540)
Q Consensus       510 l~NLA~~L~~~  520 (540)
                      ++.+|..+..+
T Consensus        82 ~Y~~g~~~~~~   92 (203)
T PF13525_consen   82 LYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66777765544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0067  Score=62.38  Aligned_cols=93  Identities=22%  Similarity=0.265  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHHc--------CCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE--------EPNNP----------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS  476 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal--------DP~Np----------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~  476 (540)
                      ..|+|++|...|+.||..        .|..+          .+++||++++. ..|+|-+++++-...|..+|++..||+
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f  268 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF  268 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            448899999999998753        45554          36789999877 699999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       477 NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      ..|.+... .=+.++|.+-|.++++++|.-+.+
T Consensus       269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence            99887654 345899999999999999976554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.74  E-value=0.0053  Score=61.86  Aligned_cols=73  Identities=29%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             cCCHHHHHHHHHHHHHc--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH
Q 009204          451 TKDYDRAEECFKRAIQS--DPPD----AEALSQYADFLWLVR-KDLWAAEETYQQAMAAE--PNS----SSYASKYASFL  517 (540)
Q Consensus       451 ~GD~deAEe~feRALeL--DPnd----AeAl~NLA~~L~~~r-GD~EEAee~feKALeLD--Pdn----peal~NLA~~L  517 (540)
                      ..++++|+++|++|+.+  .-++    +..+.++|.++. .. |++++|+++|++|+.+-  -+.    ...+.++|.++
T Consensus        87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            33555555555555554  2222    224444554432 23 45555555555555541  111    12345555555


Q ss_pred             HHcCCCc
Q 009204          518 WNTGGEE  524 (540)
Q Consensus       518 ~~~GR~E  524 (540)
                      ...|+++
T Consensus       166 ~~l~~y~  172 (282)
T PF14938_consen  166 ARLGRYE  172 (282)
T ss_dssp             HHTT-HH
T ss_pred             HHhCCHH
Confidence            5555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.68  E-value=0.0079  Score=67.57  Aligned_cols=108  Identities=10%  Similarity=0.006  Sum_probs=85.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..|..++|..+|+...+..+-  +...|..+...|. ..|++++|++.+++. ...| +..+|..+...+. ..|+++.|
T Consensus       438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a  513 (697)
T PLN03081        438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELG  513 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHH
Confidence            458999999999998874322  3456777777788 499999999999875 3444 4556777776654 57899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +..+++.+.++|++...+..++.+|...|+.++|
T Consensus       514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            9999999999999988899999999999997653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.61  E-value=0.013  Score=66.87  Aligned_cols=110  Identities=17%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--------DAEALSQYAD  480 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeLDPn--------dAeAl~NLA~  480 (540)
                      ..|++++|..++++++......      ..++.++|.+++. .|++++|+.++++++.+...        ....+..+|.
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            3589999999999999763321      2356678888884 99999999999999996221        2334556677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCccc
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPN-----SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPd-----npeal~NLA~~L~~~GR~Et~  526 (540)
                      +++. .|++++|..++++++.+...     ....+..+|.++...|+++++
T Consensus       582 ~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        582 LLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            7665 69999999999999886332     345567788899999987643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.55  E-value=0.024  Score=53.46  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS---YA  510 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe---al  510 (540)
                      +..+++-|.-.. ..|+|++|++.|+.....-|-.   ..+...++..++. .+++++|+..+++-|+++|+++.   ++
T Consensus        10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            456777788777 4999999999999999987766   4578888888876 78999999999999999998875   46


Q ss_pred             HHHHHHHHHcCC
Q 009204          511 SKYASFLWNTGG  522 (540)
Q Consensus       511 ~NLA~~L~~~GR  522 (540)
                      +..|.....+..
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            666666665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.54  E-value=0.012  Score=65.09  Aligned_cols=71  Identities=11%  Similarity=0.038  Sum_probs=33.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 009204          443 YAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAA-EPNSSSYASKYAS  515 (540)
Q Consensus       443 LA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeL-DPdnpeal~NLA~  515 (540)
                      +|.++. +.|+.++|++.|+..++..|.  +-.++.|+...|.. .++|.++...+.|-=.. -|+.+...++-|.
T Consensus       265 LAmCar-klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  265 LAMCAR-KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHH-HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            444444 355555555555555555443  23345555544443 34555555555554222 2444444444433

The molecular function of this protein is uncertain.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.47  E-value=0.011  Score=59.58  Aligned_cols=105  Identities=19%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEE-----PNN-PLLLLNYAQFLHLVT-KDYDRAEECFKRAIQSD--PPD----AEALSQYADFLW  483 (540)
Q Consensus       417 Gd~eeAe~lYqkALalD-----P~N-p~allNLA~~L~~~~-GD~deAEe~feRALeLD--Pnd----AeAl~NLA~~L~  483 (540)
                      .++++|..+|++|+.+.     |.. +.++.++|.+|. .. |++++|.++|++|+++-  -+.    ...+.++|.++.
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            48999999999999872     222 347788999877 46 89999999999999971  122    235667787765


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCC
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNS-------SSYASKYASFLWNTGGE  523 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdn-------peal~NLA~~L~~~GR~  523 (540)
                       ..|+|++|++.|++.....-++       ..+++..+.+++..|+.
T Consensus       167 -~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~  212 (282)
T PF14938_consen  167 -RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY  212 (282)
T ss_dssp             -HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H
T ss_pred             -HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH
Confidence             4789999999999998853221       13566777888888875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.45  E-value=0.031  Score=55.87  Aligned_cols=103  Identities=20%  Similarity=0.105  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-SDPPDAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe-LDPndAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      .++..+...+.++..|.... .+.+|..+.+ .|++.+|+.+|++|+. +=.+|+..+..++...+. .+++.+|...++
T Consensus        72 P~R~~Rea~~~~~~ApTvqn-r~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe  148 (251)
T COG4700          72 PERHLREATEELAIAPTVQN-RYRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLE  148 (251)
T ss_pred             hhHHHHHHHHHHhhchhHHH-HHHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence            34555566677777887543 4567888885 9999999999999998 567888888889988876 588999999999


Q ss_pred             HHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009204          498 QAMAAEPN--SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       498 KALeLDPd--npeal~NLA~~L~~~GR~E  524 (540)
                      +..+.+|.  .|+.+.-+|..|..+|+++
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            99999984  6778889999999999987

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.016  Score=60.41  Aligned_cols=108  Identities=20%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA--DFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA--~~L~~~rGD~EEAe  493 (540)
                      .+++.+|...|..++..+|++.++...||.++.. .|+.+.|...+...=.-..++. .+.--+  .++. +..+..+. 
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~-qaa~~~~~-  222 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLE-QAAATPEI-  222 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHH-HHhcCCCH-
Confidence            4899999999999999999999999999998884 9999998887765321111111 111011  1111 11111111 


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      .-+++.+..||++.++.+.+|..|...||.++|+
T Consensus       223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al  256 (304)
T COG3118         223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAAL  256 (304)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            2456677778888888888888888888877654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.41  E-value=0.048  Score=58.58  Aligned_cols=122  Identities=21%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHH-HH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE----EPNNPLLLLNYAQFLHLV---TKDYDRAEECFKR-AI  465 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal----DP~Np~allNLA~~L~~~---~GD~deAEe~feR-AL  465 (540)
                      .+++++.-.+      -|.-.+-.+|+.-..+.+..=.+    -++.+.+...||.++. .   .||.++|++.+.. ..
T Consensus       138 ~ls~div~~l------llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~  210 (374)
T PF13281_consen  138 LLSPDIVINL------LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLE  210 (374)
T ss_pred             hcChhHHHHH------HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHh
Confidence            4455554443      22334557788777777766555    4566777788888776 4   8999999999999 45


Q ss_pred             HcCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          466 QSDPPDAEALSQYADFLWLV--------RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       466 eLDPndAeAl~NLA~~L~~~--------rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      ..++.+++.+.-+|.++-..        ...+++|+.+|+|+.+++|+ .+.-.|++.+|.-.|..
T Consensus       211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~  275 (374)
T PF13281_consen  211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHD  275 (374)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCc
Confidence            56788999999889875221        22488999999999999964 56778999999888864

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.38  E-value=0.0057  Score=42.01  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDP  469 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDP  469 (540)
                      +|..+|.++. ..|++++|.++|+++++++|
T Consensus         3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence            4455555555 25555555555555555555

...

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.38  E-value=0.044  Score=65.63  Aligned_cols=105  Identities=18%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      |++++|.++|++..+.+ +.+...|..+...|. ..|++++|.+.|++..+.  .|+ ...|..+...+. ..|++++|.
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~-k~G~~eeA~  669 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG-HAGDLDKAF  669 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hCCCHHHHH
Confidence            55555555555555543 234444444444444 255555555555555543  332 333433333332 244555555


Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCc
Q 009204          494 ETYQQAMAAE-PNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       494 e~feKALeLD-Pdnpeal~NLA~~L~~~GR~E  524 (540)
                      +++++..+.. +.+...+..+...|.+.|+.+
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence            5555555432 123344445555555555544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.36  E-value=0.015  Score=65.40  Aligned_cols=110  Identities=13%  Similarity=0.012  Sum_probs=91.0

Q ss_pred             cccccCCCCCCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 009204          407 VTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPL-LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV  485 (540)
Q Consensus       407 v~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~-allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~  485 (540)
                      ..+-|-..-.|+...|.+|++.|+...|.... .+.++|+++. .-|-.-.|..++.++|.++-..+-.++-+|..++. 
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-  688 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-  688 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-
Confidence            33434345669999999999999999998664 5779999887 47788899999999999998888888888887654 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      ..+.++|++.|++|+.++|+++..-..|-.+-.
T Consensus       689 l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  689 LKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            578999999999999999999998766655444

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.24  E-value=0.053  Score=64.98  Aligned_cols=107  Identities=13%  Similarity=0.062  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCHH
Q 009204          416 YMDYFRTDLLYQMGVA----EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-PPDAEALSQYADFLWLVRKDLW  490 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALa----lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-PndAeAl~NLA~~L~~~rGD~E  490 (540)
                      .|++++|.+.|++..+    ..|+ ...|..+-..|. ..|++++|++.|++..+.+ +.+...|+.+...+. ..|+++
T Consensus       555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~d  631 (1060)
T PLN03218        555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWD  631 (1060)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHH
Confidence            4788888888888876    3563 566666666677 4888888888888888876 456667777666554 478888


Q ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          491 AAEETYQQAMAA--EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       491 EAee~feKALeL--DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|++.|++..+.  .|+ ...+..+...+.+.|+.++|
T Consensus       632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA  668 (1060)
T PLN03218        632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKA  668 (1060)
T ss_pred             HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHH
Confidence            888888888876  455 56677778888888887654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.24  E-value=0.003  Score=66.97  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|+++.|+..|-.||.++|..+.+|.+.|.++. ..+....|+.-+..|++++|+.+.-|-..+... ...|++++|...
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~d  204 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHD  204 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHH
Confidence            388999999999999999999999999999887 599999999999999999999988655444433 346899999999


Q ss_pred             HHHHHHhCCCC
Q 009204          496 YQQAMAAEPNS  506 (540)
Q Consensus       496 feKALeLDPdn  506 (540)
                      ++.|.+++-+.
T Consensus       205 l~~a~kld~dE  215 (377)
T KOG1308|consen  205 LALACKLDYDE  215 (377)
T ss_pred             HHHHHhccccH
Confidence            99999987653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.044  Score=56.83  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +.+.+|.-+|+..-...|-.+.++++.|.++.. +|++++|+..++.||..++++++++.|+-..-.....+.+--.+++
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            457888999999888677789999999987774 9999999999999999999999999998776555556667778888


Q ss_pred             HHHHHhCCCCHHH
Q 009204          497 QQAMAAEPNSSSY  509 (540)
Q Consensus       497 eKALeLDPdnpea  509 (540)
                      .+....+|.++.+
T Consensus       266 ~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  266 SQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHhcCCcchHH
Confidence            8888899988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.13  E-value=0.02  Score=64.37  Aligned_cols=106  Identities=10%  Similarity=-0.037  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .|++++|.+.|++..+  | |...|+.+...|. ..|+.++|++.|++.++  +.|+.. .+..+...+. ..|+.++|.
T Consensus       373 ~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~-~~g~~~~a~  446 (697)
T PLN03081        373 WGRMEDARNVFDRMPR--K-NLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSACR-YSGLSEQGW  446 (697)
T ss_pred             CCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHh-cCCcHHHHH
Confidence            3666777777766543  2 4456666666666 37777777777777655  344433 3333333333 356777777


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCcccc
Q 009204          494 ETYQQAMAAEPN--SSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       494 e~feKALeLDPd--npeal~NLA~~L~~~GR~Et~~  527 (540)
                      ++|++..+..+-  +...+..+..+|.+.|+.++|+
T Consensus       447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            777776653221  2234556666777777777654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.13  E-value=0.01  Score=40.74  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      +++|..+|.++. ..|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence            367888998765 5899999999999999999964

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.06  E-value=0.044  Score=59.90  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE----ALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe----Al~NLA~~L~~~rGD~EE  491 (540)
                      ..+.+.|+++++...+..|+.+..+..-|.++. ..|+.++|++.|++|+.....-..    .+..+++.+. ..+++++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHH
Confidence            467899999999999999999999999999888 599999999999999965444333    3445666544 4689999


Q ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Q 009204          492 AEETYQQAMAAEPN-SSSYASKYASFLWNTGGE  523 (540)
Q Consensus       492 Aee~feKALeLDPd-npeal~NLA~~L~~~GR~  523 (540)
                      |.++|.+..+.+.- .+.+.+-.|.++...|+.
T Consensus       324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            99999999998664 556677788899999887

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.04  E-value=0.0071  Score=64.62  Aligned_cols=81  Identities=19%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      .-|+-|+ ++|.|++|+.||.++|.++|.++..+.|.|..|+.. +.+..|+.--..|+.+|-.+.-++...+.+-..+|
T Consensus       102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~-K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ-KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            4577788 699999999999999999999999999999988764 57999999999999999888877777777666666


Q ss_pred             CCc
Q 009204          522 GEE  524 (540)
Q Consensus       522 R~E  524 (540)
                      ..+
T Consensus       180 ~~~  182 (536)
T KOG4648|consen  180 NNM  182 (536)
T ss_pred             hHH
Confidence            543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.90  E-value=0.061  Score=48.23  Aligned_cols=62  Identities=26%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe  501 (540)
                      .++..++..+. ..|++++|+..+++++.++|-+-.++..+-.++. ..|+..+|++.|++..+
T Consensus        63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            45666777777 4999999999999999999999999999888776 47999999999998865

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.064  Score=56.80  Aligned_cols=108  Identities=18%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------HHH--------------
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKR----------------AIQ--------------  466 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feR----------------ALe--------------  466 (540)
                      .+|..|..+|++.-.+.|......+-+|+.++. .+.+..|......                ||.              
T Consensus        58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve  136 (459)
T KOG4340|consen   58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE  136 (459)
T ss_pred             HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence            568888888888888888888877778888884 7777777654432                222              


Q ss_pred             cCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          467 SDP--PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       467 LDP--ndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .-|  ++++...+.|-++++ .|++++|++-|+.|++..--++-..+|+|.+.++.|+++.+
T Consensus       137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasA  197 (459)
T KOG4340|consen  137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASA  197 (459)
T ss_pred             hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHH
Confidence            123  567778888877764 68999999999999999999999999999999999998754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.014  Score=59.67  Aligned_cols=80  Identities=24%  Similarity=0.292  Sum_probs=71.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      |.-|+ ..++|+.|+.+|-+||.++|..+..+.|-+..+++ .++++.+..-=++|++++|+-...++-+|..+.....+
T Consensus        17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34455 47789999999999999999999999999987665 78899999999999999999999999999999998887


Q ss_pred             cc
Q 009204          524 ET  525 (540)
Q Consensus       524 Et  525 (540)
                      ++
T Consensus        95 ~e   96 (284)
T KOG4642|consen   95 DE   96 (284)
T ss_pred             cH
Confidence            74

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.73  E-value=0.064  Score=62.61  Aligned_cols=103  Identities=13%  Similarity=-0.021  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +++.+|.+...+.++..|+-+.+..--|..+.+ +|+.++|..+++.--...++|...+.-+-.+|- ..+++++|..+|
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHH
Confidence            556666666666666666655555555555553 666666665555555555555555555554433 345566666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++|+..+|. -+.++.|-.++.+.+.
T Consensus       101 e~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen  101 ERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             HHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence            666666666 4555555555544444

>PLN03077 Protein ECB2; Provisional

Probab=95.66  E-value=0.066  Score=61.64  Aligned_cols=104  Identities=8%  Similarity=-0.105  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .|++++|...|++.    +.|...|+.+...|. ..|+.++|+++|++.++  +.|+.... ..+-..+. ..|++++|.
T Consensus       537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~-~~ll~a~~-~~g~v~ea~  609 (857)
T PLN03077        537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTF-ISLLCACS-RSGMVTQGL  609 (857)
T ss_pred             cCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHh-hcChHHHHH
Confidence            47777777777765    446677777777666 47888888888887766  35655443 22323333 357788888


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCccc
Q 009204          494 ETYQQAMAAEPN--SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       494 e~feKALeLDPd--npeal~NLA~~L~~~GR~Et~  526 (540)
                      ++|++..+..+-  +...+..+..+|.+.|+.++|
T Consensus       610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence            888877743221  235667777777777776654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.037  Score=57.61  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC--CCHHHHHHHHHHHHHHcCCH
Q 009204          417 MDYFRTDLLYQMGVAEE-PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ----SDP--PDAEALSQYADFLWLVRKDL  489 (540)
Q Consensus       417 Gd~eeAe~lYqkALalD-P~Np~allNLA~~L~~~~GD~deAEe~feRALe----LDP--ndAeAl~NLA~~L~~~rGD~  489 (540)
                      ++|.-...+|.+.++.+ |.+|.+...++.+..+ .||.+.|+.+|++.-+    ++-  +.-.++.|.+.++ ...+++
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~-lg~nn~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH-LGQNNF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe-ecccch
Confidence            55666677777777766 5667777777777664 7777777777773322    221  1222444445433 335667


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          490 WAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      ..|...|.+.+..||.++.+-.|.|.++..+|+.
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            7777777777777777777777777777777764

>smart00028 TPR Tetratricopeptide repeats

Probab=95.62  E-value=0.02  Score=35.62  Aligned_cols=31  Identities=32%  Similarity=0.480  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP  470 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPn  470 (540)
                      ++.++|.++.. .+++++|..+|+++++++|+
T Consensus         3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            45556665553 66666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.59  E-value=0.23  Score=49.47  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-
Q 009204          417 MDYFRTDLLYQMGVAEEPNN-PLLLLNYAQFLHLVTK--------DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR-  486 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~N-p~allNLA~~L~~~~G--------D~deAEe~feRALeLDPndAeAl~NLA~~L~~~r-  486 (540)
                      .+..+|..+|++|....-.. ..+..+++.++.  .|        +..+|...|++|-...  ++.+..++|..+.... 
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence            48899999999999974333 344677787665  33        4458999999999886  8888889998765432 


Q ss_pred             --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          487 --KDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       487 --GD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                        .|+++|..+|++|.+...  ...+++++ ++...|
T Consensus       203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence              389999999999999887  78888888 666656

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.55  E-value=0.079  Score=64.34  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .+.+++|.++|++.++..-+-..+|..||.++.. +.+-++|...++|||+--|.  +.+.....|.+-++ .||.+.+.
T Consensus      1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGR 1620 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGR 1620 (1710)
T ss_pred             hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhH
Confidence            3678899999999999888888999999999994 88889999999999999998  78888888887765 79999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      ..|+-.+..+|...+.|.-|...-..+|+.
T Consensus      1621 tlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1621 TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred             HHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence            999999999999999999988877776664

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.49  E-value=0.021  Score=60.49  Aligned_cols=90  Identities=12%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204          425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP  504 (540)
Q Consensus       425 lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP  504 (540)
                      .|.++-...|+|+..|..|+.... +.|-+.+-...|.++++.+|.|++.|...+.+-+...++.+.+...|.++++++|
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            566666778999999999998655 6899999999999999999999999986555555567899999999999999999


Q ss_pred             CCHHHHHHHHH
Q 009204          505 NSSSYASKYAS  515 (540)
Q Consensus       505 dnpeal~NLA~  515 (540)
                      ++|..|..|-.
T Consensus       174 ~~p~iw~eyfr  184 (435)
T COG5191         174 RSPRIWIEYFR  184 (435)
T ss_pred             CCchHHHHHHH
Confidence            99999876654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.33  E-value=0.027  Score=40.22  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQS  467 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeL  467 (540)
                      ++.++|.++. ..|++++|+++|+++|.+
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            3566777666 377777777777775443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.27  E-value=0.34  Score=50.36  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVT-----------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       423 e~lYqkALalDP~Np~allNLA~~L~~~~-----------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      ...|.+.++.+|+|..+|..|..+-....           .-.++.+.+|++||+.+|++...+..|-.... ...+.++
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~   83 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEK   83 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHH
Confidence            45688899999999999999887543211           11467788999999999999988877766544 3567888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      ..+-+++++..+|+++..|..|-.+...
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            8899999999999999998877665443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.19  Score=52.31  Aligned_cols=105  Identities=12%  Similarity=0.050  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH---LVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~---~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .+++-|++..+++...+-+.  .+..+|..+.   ...+....|.-+|+.-=+.-|..+..++..|.+.. ..+++++|+
T Consensus       151 ~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe  227 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAE  227 (299)
T ss_pred             HHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHH
Confidence            56788888888888876643  3334444332   12456889999999998877778888888887765 578999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ..++.|+..++++|+.+.|+-..-..+|...
T Consensus       228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~  258 (299)
T KOG3081|consen  228 SLLEEALDKDAKDPETLANLIVLALHLGKDA  258 (299)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence            9999999999999999999999999999874

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.19  Score=56.80  Aligned_cols=102  Identities=17%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH------HHHHHHHcC
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY------ADFLWLVRK  487 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL------A~~L~~~rG  487 (540)
                      ...+....+....+.++..||+++.++.|+|..+....+.+.-+...-+.|..+.|++.+++..+      +.. ....+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  156 (620)
T COG3914          78 APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRY-LKLLG  156 (620)
T ss_pred             cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHH-HHHhc
Confidence            34477788899999999999999999999999888644455556666666999999999988777      654 34568


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA~~  516 (540)
                      +.++++..++++..+.|.++++...+...
T Consensus       157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         157 RTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            89999999999999999998876666555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.09  E-value=0.64  Score=51.93  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------CCC--
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-----------------------PPD--  471 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-----------------------Pnd--  471 (540)
                      .+..+-.++-++||+++|+.+++|.-+|.  . ...-..+|+++|+||++..                       +.+  
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE--E-eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE--E-EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc--c-cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            45566666777777777777777766554  1 2344566777777666630                       111  


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCcc
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN--SSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd--npeal~NLA~~L~~~GR~Et  525 (540)
                      .-+...+|..+++ .|+.+||++.++..++..|.  +-.++.++...|...+++++
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad  313 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD  313 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence            3355667877664 79999999999999998885  55689999999999999864

The molecular function of this protein is uncertain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.02  E-value=0.097  Score=59.03  Aligned_cols=62  Identities=19%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSS  508 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpe  508 (540)
                      .-|.+.|+ .+..|+|...++   .+++.+..++.-.|.++|. .++|++|...|+..++.+-++.+
T Consensus        84 EKAYc~Yr-lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   84 EKAYCEYR-LNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHHHH-cccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHH
Confidence            44556663 777777777777   5566666666666777665 56778888887777776655444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.94  E-value=0.041  Score=56.23  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      .+|.+.|.+.|.||+++.|..+..|..+|. +.+..|+.+.|.+.|++.+++||.+
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCccc
Confidence            555555555555555555555555555553 2334455555555555555555543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.91  E-value=0.18  Score=56.11  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA--LSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA--l~NLA~~L~~~rGD~EEAe  493 (540)
                      .+++++-..+|++-|...|.|..+|..||-+-. ..||.++|...|+-||....-+..-  |-.|-.|-. ..|.+++|.
T Consensus       450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi-~~~E~ekaR  527 (677)
T KOG1915|consen  450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI-EEGEFEKAR  527 (677)
T ss_pred             HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh-hcchHHHHH
Confidence            478999999999999999999999999998666 6999999999999999975544332  223333333 258899999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      ..|++.++..+... +|...|.+-.
T Consensus       528 ~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  528 ALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             HHHHHHHHhcccch-HHHhHHHHhc
Confidence            99999999998877 8888888765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.82  E-value=0.28  Score=55.47  Aligned_cols=105  Identities=18%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------------
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--------------------------  470 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--------------------------  470 (540)
                      +..++|...++   -+++.+..++.-.|+.+|+ .|+|++|...|+..++-+-+                          
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            45566666665   3467677677778999994 99999999999987543222                          


Q ss_pred             -----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHcCCCccc
Q 009204          471 -----DAEALSQYADFLWLVRKDLWAAEETYQQAMAA-------EPNS--------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       471 -----dAeAl~NLA~~L~~~rGD~EEAee~feKALeL-------DPdn--------peal~NLA~~L~~~GR~Et~  526 (540)
                           ..+-++|.|..+.. .|+|.+|++.+++|+++       +-.+        ..+...+|.+|..+|+.+++
T Consensus       169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                 33456677766654 68999999999999442       1222        13688999999999997653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.77  E-value=0.061  Score=58.83  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSD----PP--DAEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np------~allNLA~~L~~~~GD~deAEe~feRALeLD----Pn--dAeAl~NLA~~L~  483 (540)
                      .|+|++|+..-+.-|.+..+..      .++.|+|.++. ..|+++.|.++|++++.+.    -.  .+...+.||..|.
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt  286 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT  286 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence            4889999988887777644332      47889999877 5999999999999977652    22  2334556677665


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCCcc
Q 009204          484 LVRKDLWAAEETYQQAMAAEP------NSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDP------dnpeal~NLA~~L~~~GR~Et  525 (540)
                      . .+++++|++|+.+=+++.-      ....+++.||+.+..+|..++
T Consensus       287 l-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  287 L-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence            4 5679999999998776532      345578889999999988765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.77  E-value=0.32  Score=43.56  Aligned_cols=51  Identities=24%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++..++..+. ..|++++|++++++++..+|.+-.++..+-.+|..+|+..+
T Consensus        64 ~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~  114 (146)
T PF03704_consen   64 ALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAE  114 (146)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHH
Confidence            4445666554 47899999999999999999999999999999999999753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.77  E-value=0.38  Score=41.60  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009204          423 DLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD  471 (540)
Q Consensus       423 e~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd  471 (540)
                      ...++++++.+|+|..+.+.+|..+. ..|++++|.+.+-..++.++++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence            56789999999999999999999888 4999999999999999999877

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.77  E-value=0.1  Score=52.71  Aligned_cols=81  Identities=20%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAE-----ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAe-----Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      |.-++ +.|+|++|..-|.+||++=|.-+.     .|.|.|..+.. .+..+.|+.---+||+++|.+-.++...|.+|-
T Consensus       102 GN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            55667 599999999999999999888754     56677776665 567999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 009204          519 NTGGEETC  526 (540)
Q Consensus       519 ~~GR~Et~  526 (540)
                      .+.+++++
T Consensus       180 k~ek~eea  187 (271)
T KOG4234|consen  180 KMEKYEEA  187 (271)
T ss_pred             hhhhHHHH
Confidence            88887754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.2  Score=53.92  Aligned_cols=107  Identities=11%  Similarity=-0.027  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-DPPD---AEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL-DPnd---AeAl~NLA~~L~~~rGD~EEA  492 (540)
                      |++.+|...+++.|...|.|..++.---.+++ ..|+.+.-...+++.+-. +|+-   .-++..|+-.|. .-|-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhH
Confidence            77888888888888888888766554444555 488888888888888876 6666   334444554343 35778888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++.-++|++++|.+.=+....++++-.-||.++
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke  227 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKE  227 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence            888888888888888777788888887777654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.61  E-value=0.7  Score=49.91  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhhchhhhhh-ccCCHHHHHhcccccccccC-CCCCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHH
Q 009204          372 ELDLWNSVLDEALRIQEESEY-RILDHETMQHFVTPVTVKLE-PDDYMDYFRTDLLYQM-GVAEEPNNPLLLLNYAQFLH  448 (540)
Q Consensus       372 e~~LW~~~L~eap~~q~~~~~-eaLD~e~~~~lvapv~a~Le-~d~~Gd~eeAe~lYqk-ALalDP~Np~allNLA~~L~  448 (540)
                      +..=|..|+.-+..++..-.+ .+-.+.+..++    +-.|. ....|+.++|...+.. .....+.+++.+.-.|.++.
T Consensus       153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~y----afALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQY----AFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             hhhhHHHHHHHHHHhhccCccchhcchHHHHHH----HHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            344477787777666643333 22244444444    11222 2347999999999999 55567888999888888663


Q ss_pred             Hh--------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204          449 LV--------TKDYDRAEECFKRAIQSDPPDAEALSQYADFL  482 (540)
Q Consensus       449 ~~--------~GD~deAEe~feRALeLDPndAeAl~NLA~~L  482 (540)
                      +.        ...+++|+..|+++.+++|+.-. -.|++.++
T Consensus       229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL  269 (374)
T PF13281_consen  229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLL  269 (374)
T ss_pred             HHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHH
Confidence            11        23478999999999999976543 33455443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.45  E-value=0.072  Score=35.81  Aligned_cols=31  Identities=35%  Similarity=0.445  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP  470 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPn  470 (540)
                      +++++|.++.. .|++++|.++|++.++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            34455554442 55555555555555555554

>smart00028 TPR Tetratricopeptide repeats

Probab=94.44  E-value=0.066  Score=33.16  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      .++.++|..+.. .+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCC
Confidence            467788987765 789999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.40  E-value=0.26  Score=54.92  Aligned_cols=106  Identities=23%  Similarity=0.257  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .+.+.+.+.|+.+|.+=|+-    +.+|+-||.+..+ +.++..|.+.+-.||-.-|.+-.... |--+-. +.++++..
T Consensus       380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk~-YIelEl-qL~efDRc  456 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFKG-YIELEL-QLREFDRC  456 (677)
T ss_pred             hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHHH-HHHHHH-HHhhHHHH
Confidence            57899999999999999974    4578889998884 89999999999999999998875432 333333 34679999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ...|++-++-.|.+-.+|..||.+-..+|+.|.
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR  489 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDR  489 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence            999999999999999999999999998998774

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.36  E-value=0.52  Score=48.49  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=70.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHH----
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWLV----  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~~----  485 (540)
                      .|++++|...|++.....|..+   .+.+.++..++ +.+++++|+.+.++-+++.|+++++   ++-.|...+..    
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            4999999999999999988766   57888888888 5999999999999999999999874   22222222211    


Q ss_pred             cCC---HHHHHHHHHHHHHhCCCCHH
Q 009204          486 RKD---LWAAEETYQQAMAAEPNSSS  508 (540)
Q Consensus       486 rGD---~EEAee~feKALeLDPdnpe  508 (540)
                      ..|   ..+|..-|+..++.-|+...
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            123   45677778888888898764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.11  E-value=0.087  Score=57.71  Aligned_cols=107  Identities=10%  Similarity=0.053  Sum_probs=81.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPL----LLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADFLWL  484 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~----allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~L~~  484 (540)
                      +.|++......|+.||+.--+|-.    +|..+|.+|+ ..+||++|.+|-..-|.+      .-..+..-.|||..+ +
T Consensus        29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl-K  106 (639)
T KOG1130|consen   29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL-K  106 (639)
T ss_pred             hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh-h
Confidence            458899999999999999777654    6778898888 599999999986654443      233455667888865 6


Q ss_pred             HcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCC
Q 009204          485 VRKDLWAAEETYQQAMAAE----P--NSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       485 ~rGD~EEAee~feKALeLD----P--dnpeal~NLA~~L~~~GR~  523 (540)
                      .+|.+++|+.+-.+-+.+.    -  ....+++|+|++|...|+-
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~  151 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC  151 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence            7899999998877766543    2  3456899999999998873

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.10  E-value=0.023  Score=62.46  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=65.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      |.-.+ ..++++.|...|.+||+++|+++..+.+.+..+. ..+++-.|+.=..+||+++|....+++.-|.+....+++
T Consensus        11 an~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen   11 ANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             Hhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            44445 4899999999999999999999999988886554 478999999999999999999887776666666666664


Q ss_pred             c
Q 009204          524 E  524 (540)
Q Consensus       524 E  524 (540)
                      .
T Consensus        89 ~   89 (476)
T KOG0376|consen   89 K   89 (476)
T ss_pred             H
Confidence            4

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.05  E-value=0.12  Score=55.91  Aligned_cols=111  Identities=18%  Similarity=0.106  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD----------AEALSQYAD  480 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd----------AeAl~NLA~  480 (540)
                      +.++++.+.|++|++..-++.+      ++..+|.++.+ .+|+++|.-+..+|.++--+.          ..++++++.
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            5689999999999987544333      56778887774 999999999999999874332          346677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCcccccC
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAE------PNSSSYASKYASFLWNTGGEETCFPL  529 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLD------Pdnpeal~NLA~~L~~~GR~Et~~pl  529 (540)
                      .| ..+|++-.|.++-++|.++.      |-++....-+|.+|...|+.|++|+.
T Consensus       215 al-R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r  268 (518)
T KOG1941|consen  215 AL-RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR  268 (518)
T ss_pred             HH-HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence            65 45788999999999998863      34455677889999999998887763

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.04  E-value=0.16  Score=49.76  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204          422 TDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL  482 (540)
Q Consensus       422 Ae~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L  482 (540)
                      |+.+|.+|+.+.|+++..|+.+|.++. ..|+.=.|.-+|-|++...-.++.+..|+..++
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            567888888888888888888887766 478888888888888877666677777777654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.01  E-value=0.71  Score=46.38  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=84.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----------------
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEP----NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPP----------------  470 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP----~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPn----------------  470 (540)
                      ....|+++.|...+.++...++    ..+.+.+.+|.++. ..|+..+|...++..+..  ...                
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLES  234 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccc
Confidence            3466999999999999988652    25678888999999 499999999999999881  110                


Q ss_pred             ----------------CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          471 ----------------DAEALSQYADFLWLV-----RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       471 ----------------dAeAl~NLA~~L~~~-----rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                                      -+.++..+|.+....     .++.+++...|++|++++|+...+|+.+|.++...=..
T Consensus       235 ~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  235 LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence                            123455566554432     27899999999999999999999999999988765443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=0.19  Score=53.64  Aligned_cols=87  Identities=16%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .+|..|...|-++|+..-.|    +.+|.|.|.+-+ ..|+|..|+.-..+|+.++|.+..+++.-|..+++ ..++++|
T Consensus        95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le~~~~a  172 (390)
T KOG0551|consen   95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LERFAEA  172 (390)
T ss_pred             hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HHHHHHH
Confidence            67999999999999985443    456778887666 49999999999999999999999999988887776 4567777


Q ss_pred             HHHHHHHHHhCCC
Q 009204          493 EETYQQAMAAEPN  505 (540)
Q Consensus       493 ee~feKALeLDPd  505 (540)
                      ..+.+..+..+-.
T Consensus       173 ~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  173 VNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHhhhhhhhHH
Confidence            7777766665443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.88  E-value=0.17  Score=49.57  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       457 AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      |+.||++|+.+.|++...|+++|.+.. ..|+.-.|+-+|-|++...--.+.+..|+..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999998765 57899999999999998766668899999999888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.80  E-value=0.28  Score=42.48  Aligned_cols=65  Identities=15%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 009204          457 AEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS--SSYASKYASFLWNTGG  522 (540)
Q Consensus       457 AEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn--peal~NLA~~L~~~GR  522 (540)
                      ....++++++.+|+|.++.+.+|..+. ..|++++|++.+.+.++.++++  ..+.-.+-.++-..|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            456789999999999999999999765 5899999999999999999876  4444444445544454

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.56  E-value=0.14  Score=34.31  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      +++.++|.++.. .|++++|+++|++.++..|++
T Consensus         1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            467889987765 789999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.56  E-value=0.13  Score=36.64  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAA--EPNS  506 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeL--DPdn  506 (540)
                      +|.++|.++. ..|++++|+++|++++.+  +|.+
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccC
Confidence            4788998765 589999999999996654  4443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.56  E-value=1.1  Score=44.53  Aligned_cols=99  Identities=13%  Similarity=0.008  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH----cC-
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV---TKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLV----RK-  487 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~---~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~----rG-  487 (540)
                      .+..+|..+|+.+  .+..++.+.++||.++...   ..|+.+|..+|++|.+..-.. ..+..+++..+...    .- 
T Consensus        91 ~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          91 RDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            5689999999944  4567888999999988742   349999999999999975433 23477778765431    01 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          488 -DLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       488 -D~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                       +..+|..+|.+|-...  ++.+..++|..|..
T Consensus       169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence             3458999999998887  77788888877654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.53  E-value=1.3  Score=46.13  Aligned_cols=107  Identities=17%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--cCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV--RKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~--rGD~EEAee  494 (540)
                      .-.+....+|++||+.+|++..++..|=..+. ..-+-++..+.+++++..+|++...|..|-.+....  .-.+++...
T Consensus        45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~  123 (321)
T PF08424_consen   45 ALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD  123 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence            34567788999999999999999988888777 477999999999999999999999998887654321  124677777


Q ss_pred             HHHHHHHhCC------------------CCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEP------------------NSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDP------------------dnpeal~NLA~~L~~~GR~E  524 (540)
                      .|.++++.-.                  .-.+++.++..++.+.|-.|
T Consensus       124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E  171 (321)
T PF08424_consen  124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE  171 (321)
T ss_pred             HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Confidence            7777776411                  11235788889999999866

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.44  E-value=0.9  Score=43.86  Aligned_cols=100  Identities=16%  Similarity=0.033  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .++.++++.+++..-.+.|+.+.+-.--|.++. ..|++.+|+..++...+-.|..+.+...++..|+. ++|.+ =..+
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~   99 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRY   99 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHH
Confidence            468999999999988899999999888888877 59999999999999999999999888878877654 56533 2223


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      -.++++..+ ++++..-...++..
T Consensus       100 A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen  100 ADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             HHHHHhcCC-ChHHHHHHHHHHHh
Confidence            344555444 55655444444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=0.33  Score=52.54  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH-------------------
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS-------------------  476 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~-------------------  476 (540)
                      .|+|++|...|.-+...+--+++++.|+|-+.+ ..|.|.+|+..-.+|-+ .|-.-..+.                   
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~L  147 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSL  147 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            388999999998888877667888889988777 58899888876655421 111111122                   


Q ss_pred             --------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          477 --------QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       477 --------NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                              .+|.+.+. +-.|.+|++.|++.+.-+|..--.-.++|.+++.+.-++
T Consensus       148 qD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd  202 (557)
T KOG3785|consen  148 QDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD  202 (557)
T ss_pred             hhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence                    23333332 346888999999999888887777777888887776655

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.39  E-value=1.9  Score=42.88  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCC--C----HHHHH
Q 009204          417 MDYFRTDLLYQMGVAE----EPNN---PLLLLNYAQFLHLVTKD-------YDRAEECFKRAIQSDPP--D----AEALS  476 (540)
Q Consensus       417 Gd~eeAe~lYqkALal----DP~N---p~allNLA~~L~~~~GD-------~deAEe~feRALeLDPn--d----AeAl~  476 (540)
                      ..+++|...|.-||..    ...+   +.+++.+|+++. ..|+       +.+|.+.|++|++.+..  .    ..+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            5688999888888764    2222   456777888776 4888       44577777777776533  2    34555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 009204          477 QYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKYASFLWN  519 (540)
Q Consensus       477 NLA~~L~~~rGD~EEAee~feKALeLDPdn-peal~NLA~~L~~  519 (540)
                      .+|.+ ....|++++|.++|.+.+..--.+ +..+.+.|.=+|+
T Consensus       170 LigeL-~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  170 LIGEL-NRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            56664 445799999999999999843322 2466777766554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.33  E-value=0.31  Score=38.72  Aligned_cols=38  Identities=18%  Similarity=0.192  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ  477 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N  477 (540)
                      .++.+|..++ +.|+|++|.++.+++|+++|+|..+..-
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4566777777 5999999999999999999999887653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.24  E-value=0.18  Score=35.27  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQS  467 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeL  467 (540)
                      .++.++|.++.. +|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            355666666663 66666776666666664

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.98  E-value=0.58  Score=48.17  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      +..+++-|....+ .|++++|..+|++.....|..+   .++..++..++. .+++++|+.+.++-+++.|+++.+
T Consensus        34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence            4566677777774 9999999999999999998885   467777777775 689999999999999999988765

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.72  E-value=1.2  Score=49.70  Aligned_cols=102  Identities=24%  Similarity=0.176  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAA  492 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEA  492 (540)
                      +.+.|..+|.+|-.+..  +.+.+.+|.++....  .|..+|.++|.+|...  .+..+..++|.++...   ..+.+.|
T Consensus       308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            78999999999998765  455566787666333  4678999999999875  7888899999865432   2389999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNT-GGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~-GR~Et  525 (540)
                      ..+|++|.+..  ++.+...++.++... +++++
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~  415 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT  415 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence            99999999998  444444444443322 45443

>PRK10941 hypothetical protein; Provisional

Probab=92.62  E-value=0.82  Score=47.14  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204          441 LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       441 lNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal  510 (540)
                      .|+=..+. ..+++++|..+.++.+.++|+++.-+.-.|.++. +.|.+..|..-++..++..|+++.+.
T Consensus       185 ~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        185 DTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            34444444 3677777777777777777777766666665543 45667777777777777777666653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.54  E-value=0.54  Score=49.31  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=75.3

Q ss_pred             CCCCHHHHHHHHHHHHH----cC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Q 009204          415 DYMDYFRTDLLYQMGVA----EE--PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALa----lD--P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD  488 (540)
                      +.|+.+.|..+|+++=+    ++  -.+-.++.|.+.++. ..+++..|...|.+.+..||.++.+-+|-|.++. ..|+
T Consensus       224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~  301 (366)
T KOG2796|consen  224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGK  301 (366)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHH
Confidence            55999999999994433    22  334467777777666 6999999999999999999999999999997654 5789


Q ss_pred             HHHHHHHHHHHHHhCCCCHH
Q 009204          489 LWAAEETYQQAMAAEPNSSS  508 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpe  508 (540)
                      ...|++.++.+++.+|..+.
T Consensus       302 l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             HHHHHHHHHHHhccCCccch
Confidence            99999999999999997643

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.04  E-value=0.63  Score=50.19  Aligned_cols=111  Identities=19%  Similarity=0.085  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc-CCCCHH---HHHHHHH
Q 009204          370 KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE-EPNNPL---LLLNYAQ  445 (540)
Q Consensus       370 ~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal-DP~Np~---allNLA~  445 (540)
                      .++--.|..+|+.-|..--+.   -..+++.             -..|+...-...+++.+-. +|+-|.   ++-.||-
T Consensus       120 h~a~~~wdklL~d~PtDlla~---kfsh~a~-------------fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  120 HEAAIEWDKLLDDYPTDLLAV---KFSHDAH-------------FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             cHHHHHHHHHHHhCchhhhhh---hhhhhHH-------------HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            466667888888877622111   0111110             1125555555666666665 555532   3333444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204          446 FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQ  498 (540)
Q Consensus       446 ~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feK  498 (540)
                      .+.+ .|-|++|++..++|+++||.|.-+....+.++ +..+++.++.++..+
T Consensus       184 gL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  184 GLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHHHHh
Confidence            4443 67777777777777777777776666666654 334555555554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.94  E-value=0.27  Score=50.56  Aligned_cols=58  Identities=16%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      +.++.+.|.++|.+|+++.|+....|.-+|..-. +.|+++.|.+.|++.+++||.|-.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~e-kag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTE-KAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhh-hcccHHHHHHHHHHHHcCCccccc
Confidence            4588999999999999999999999999998555 799999999999999999998854

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.92  E-value=4.7  Score=39.02  Aligned_cols=81  Identities=17%  Similarity=0.002  Sum_probs=65.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      ....+-. ..++.++++..+...--+.|+.+++-.--|+++. .+|++.+|+..|+...+-.|..+.+-.-+|.+|..+|
T Consensus        15 e~~~~al-~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   15 EVLSVAL-RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHH-ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            3333334 3778899999998888889999998877777654 5788999999999988888988888888888888888


Q ss_pred             CCc
Q 009204          522 GEE  524 (540)
Q Consensus       522 R~E  524 (540)
                      +.+
T Consensus        93 D~~   95 (160)
T PF09613_consen   93 DPS   95 (160)
T ss_pred             ChH
Confidence            754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.55  E-value=0.44  Score=33.28  Aligned_cols=30  Identities=23%  Similarity=0.175  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAA  502 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeL  502 (540)
                      +.++.++|.++.. +|++++|+.++++++++
T Consensus         2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            3578899998765 79999999999999985

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=0.89  Score=51.58  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          420 FRTDLLYQMGVAEEPNNPLLLLNY--AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       420 eeAe~lYqkALalDP~Np~allNL--A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      ..+...|...+..+|.++.+++.+  ...+. ..++.+.|.-.++.++..||+++.+..+|+..+-...+....+..+-+
T Consensus        48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~  126 (620)
T COG3914          48 ALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE  126 (620)
T ss_pred             hHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345667777888999999886544  44444 588999999999999999999999999999987655555666667777


Q ss_pred             HHHHhCCCCHHHHHHH------HHHHHHcCCCc
Q 009204          498 QAMAAEPNSSSYASKY------ASFLWNTGGEE  524 (540)
Q Consensus       498 KALeLDPdnpeal~NL------A~~L~~~GR~E  524 (540)
                      .|....|++.++...+      +.++..+|+.+
T Consensus       127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (620)
T COG3914         127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA  159 (620)
T ss_pred             HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence            7999999999987777      66666666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.15  E-value=2  Score=53.01  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .+-+.|...+.+||+.-|.  +.+.....|++-+ +.||.+++..+|+-.|..+|.-.+.|.-|...-. ..|+.+-+..
T Consensus      1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei-k~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI-KHGDIKYVRD 1655 (1710)
T ss_pred             cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH-ccCCHHHHHH
Confidence            4567888999999999998  7788889999888 5999999999999999999999999998887654 3678999999


Q ss_pred             HHHHHHHhC--CCCHHHHHH
Q 009204          495 TYQQAMAAE--PNSSSYASK  512 (540)
Q Consensus       495 ~feKALeLD--Pdnpeal~N  512 (540)
                      .|++++.+.  |...-.+++
T Consensus      1656 lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             HHHHHHhcCCChhHhHHHHH
Confidence            999999875  444443333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.15  E-value=0.35  Score=54.05  Aligned_cols=100  Identities=12%  Similarity=0.029  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHH-HHHcCCC--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----c-------------CC
Q 009204          417 MDYFRTDLLYQM-GVAEEPN--------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ-----S-------------DP  469 (540)
Q Consensus       417 Gd~eeAe~lYqk-ALalDP~--------Np~allNLA~~L~~~~GD~deAEe~feRALe-----L-------------DP  469 (540)
                      |+|.+|.+++.. -+...|.        ..-.++|+|-+.++ .|.|.-+..+|.+||+     +             .-
T Consensus       254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n  332 (696)
T KOG2471|consen  254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN  332 (696)
T ss_pred             cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence            677777665543 3444444        22346789988884 9999999999999996     1             12


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          470 PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       470 ndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      ..-++++|.|..+.. .|++.+|.++|.+|+..--.+|..|..+|.+-.
T Consensus       333 ks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             cchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            235789999987664 689999999999999999999999999998644

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.11  E-value=1.6  Score=50.42  Aligned_cols=103  Identities=19%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH--HcCCHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLWL--VRKDLW  490 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~~--~rGD~E  490 (540)
                      -.|-++.....|++.|.+.=--|.+..|||.+|.+ ..-+++|.+.|+|.|.+  =|+-.++|+.|-.....  ....++
T Consensus       489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence            34788999999999999988889999999999985 88899999999999997  47778888887654322  134699


Q ss_pred             HHHHHHHHHHHhCCCC-H-HHHHHHHHHHH
Q 009204          491 AAEETYQQAMAAEPNS-S-SYASKYASFLW  518 (540)
Q Consensus       491 EAee~feKALeLDPdn-p-eal~NLA~~L~  518 (540)
                      .|...|++|++..|.. + ..+..||.+--
T Consensus       568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEE  597 (835)
T KOG2047|consen  568 RARDLFEQALDGCPPEHAKTIYLLYAKLEE  597 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999998832 1 23455554433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.86  E-value=2.7  Score=42.05  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCccc
Q 009204          452 KDYDRAEECFKRAIQS-DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN----SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       452 GD~deAEe~feRALeL-DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd----npeal~NLA~~L~~~GR~Et~  526 (540)
                      || ++|.+.|.++-.. .=++++.+..+|.+|.  +.|.++|+..|.+++++.+.    |++++..||.++..+|+++.|
T Consensus       121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GD-QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            44 5777777665442 2367889999998764  57899999999999998543    689999999999999999999


Q ss_pred             ccC
Q 009204          527 FPL  529 (540)
Q Consensus       527 ~pl  529 (540)
                      |-.
T Consensus       198 Yiw  200 (203)
T PF11207_consen  198 YIW  200 (203)
T ss_pred             hhh
Confidence            864

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.53  E-value=1.3  Score=48.76  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH--
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL--  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~--  489 (540)
                      .|+.++|...|++++.....-    ...+..+|..+. .++|+++|.++|.+.++.+.-....|..++.+++...++.  
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~  358 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE  358 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence            489999999999998644332    235667888777 5999999999999999987665555555555555567777  


Q ss_pred             -----HHHHHHHHHHHHhC
Q 009204          490 -----WAAEETYQQAMAAE  503 (540)
Q Consensus       490 -----EEAee~feKALeLD  503 (540)
                           ++|.++|+++-.+-
T Consensus       359 ~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  359 AKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence                 88888888886653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.48  E-value=1.9  Score=48.26  Aligned_cols=98  Identities=17%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             CCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHh---cC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVA-------EEPNNPLLLLNYAQFLHLV---TK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWL  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALa-------lDP~Np~allNLA~~L~~~---~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~  484 (540)
                      ..+.+.|..+|+.|.+       ..  ++.+.+.+|.+|...   .. |.+.|..+|.+|-+....+  +...+|.++..
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~  337 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD--AQYLLGVLYET  337 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch--HHHHHHHHHHc
Confidence            3688999999999877       33  566788899887731   23 7899999999999986544  45667876654


Q ss_pred             Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          485 VR--KDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       485 ~r--GD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      ..  .|+..|.++|..|...  .+..+.+++|.++..
T Consensus       338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            44  4678999999998764  566778888887743

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=0.52  Score=50.48  Aligned_cols=85  Identities=13%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE----ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAe----Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      +-.=|+.|+ +.++|..|+..|.++|+.+-.|++    .|.|.|...+. .|+|..|+.--.+|+.++|++.-+++.-|.
T Consensus        84 ~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   84 YKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            334588889 699999999999999998666544    46777765543 578999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009204          516 FLWNTGGEETC  526 (540)
Q Consensus       516 ~L~~~GR~Et~  526 (540)
                      +++.+.+.++|
T Consensus       162 c~~eLe~~~~a  172 (390)
T KOG0551|consen  162 CLLELERFAEA  172 (390)
T ss_pred             HHHHHHHHHHH
Confidence            99999985443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.31  E-value=2.4  Score=44.45  Aligned_cols=107  Identities=13%  Similarity=0.023  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW-AAEET  495 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E-EAee~  495 (540)
                      ..-.+|.++-..+|.++|.|-.+|.-.-.++.....|+.+=.+++.+.++-+|.+..+|.+.-.+ .+..|++. .=++.
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i-ve~l~d~s~rELef  135 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI-VELLGDPSFRELEF  135 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH-HHHhcCcccchHHH
Confidence            34578999999999999999999877666676567889999999999999999999999877654 45677888 78899


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .++.+..|..|.++|...-+++...+.++
T Consensus       136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen  136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            99999999999999999999988888875

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.25  E-value=0.77  Score=49.94  Aligned_cols=107  Identities=12%  Similarity=0.024  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP-----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE------ALSQYADFLWL  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np-----~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe------Al~NLA~~L~~  484 (540)
                      +.++.+++.+-.--+.+--.++     .++..+|.... ..+.+++++++|++|+++.-++.+      ++..+|.++ .
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf-~  173 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF-A  173 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH-H
Confidence            3556777776666666532222     45666777656 589999999999999998655543      567788765 4


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCCc
Q 009204          485 VRKDLWAAEETYQQAMAAEPN----------SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       485 ~rGD~EEAee~feKALeLDPd----------npeal~NLA~~L~~~GR~E  524 (540)
                      +.+|+++|..+..+|.++--.          ...+++.++..|..+|+.-
T Consensus       174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg  223 (518)
T KOG1941|consen  174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG  223 (518)
T ss_pred             HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc
Confidence            568999999999999987432          2245788999999999864

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=90.05  E-value=2.5  Score=49.99  Aligned_cols=110  Identities=15%  Similarity=0.031  Sum_probs=74.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.|..++|..+++..-..-++|-..+-.+-.+|. ..+++++|..+|++|+..+|+ -+.+.+|-..+.. .++|.+-.+
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQk  131 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQK  131 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHH
Confidence            4588999997777766677887777777776666 599999999999999999999 6655555444332 334444333


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc-CCCcccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNT-GGEETCF  527 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~-GR~Et~~  527 (540)
                      .--+.-+.-|.+++++.+...++.+. ...++..
T Consensus       132 aa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~  165 (932)
T KOG2053|consen  132 AALQLYKNFPKRAYYFWSVISLILQSIFSENELL  165 (932)
T ss_pred             HHHHHHHhCCcccchHHHHHHHHHHhccCCcccc
Confidence            33333347899988765555555443 3334433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=89.91  E-value=0.91  Score=51.30  Aligned_cols=90  Identities=18%  Similarity=-0.025  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~--~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.+..|+..|-++++..|+....+.|+|.++..  ..||.-.|+.--..|+++||..-.+++.|+.++.+ .+++.+|+.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence            456788999999999999999999999987752  35677889999999999999999999999998865 678999999


Q ss_pred             HHHHHHHhCCCCH
Q 009204          495 TYQQAMAAEPNSS  507 (540)
Q Consensus       495 ~feKALeLDPdnp  507 (540)
                      +...+....|.+.
T Consensus       467 ~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  467 CHWALQMSFPTDV  479 (758)
T ss_pred             hHHHHhhcCchhh
Confidence            9888888888543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.64  E-value=1.3  Score=46.23  Aligned_cols=81  Identities=17%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAE----------ALSQYADFLWLVRKDLWAAEETYQQAM  500 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAe----------Al~NLA~~L~~~rGD~EEAee~feKAL  500 (540)
                      ++..-|+-++ +.|+|++|...|+.||..        .|.+++          .+.||...++ ..|+|-+++++-...+
T Consensus       180 ~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  180 VLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEIL  257 (329)
T ss_pred             HHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4556677788 599999999999999863        566654          5678888665 4789999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcC
Q 009204          501 AAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       501 eLDPdnpeal~NLA~~L~~~G  521 (540)
                      ..+|+|.-+++..|.+....=
T Consensus       258 ~~~~~nvKA~frRakAhaa~W  278 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVW  278 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhc
Confidence            999999999998887765443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.42  E-value=1.1  Score=40.85  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHLVT---KD-------YDRAEECFKRAIQSDPPDAEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~~~---GD-------~deAEe~feRALeLDPndAeAl~NLA~~  481 (540)
                      ..|++-+|.++.+..+...+++..   ++.-=|.+++...   .|       +-.|.++|.++..+.|+.+..++.+|.-
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            347777888888887777776663   3333344433211   11       1235666666666666665555555542


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 009204          482 LWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALe  501 (540)
                      +- ....|++++.--++++.
T Consensus        88 l~-s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   88 LG-SVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hh-hHHHHHHHHHHHHHHhc
Confidence            21 12235555554444444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.33  E-value=1.2  Score=35.50  Aligned_cols=37  Identities=16%  Similarity=0.052  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~  511 (540)
                      -++.+|..++. .|+|++|.++.+++++.+|+|..+..
T Consensus         3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            35567776665 78999999999999999999998754

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.30  E-value=0.89  Score=48.50  Aligned_cols=83  Identities=14%  Similarity=0.037  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .+|.+|++++.--.+.+|.+-..+..+|.+|+. ..++..|..+|++.-.+.|....-...+|.-+++ .+.+..|++..
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~  101 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVA  101 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHH
Confidence            678999999999999999888888899998884 9999999999999999999998877777887775 57888888776


Q ss_pred             HHHHH
Q 009204          497 QQAMA  501 (540)
Q Consensus       497 eKALe  501 (540)
                      .....
T Consensus       102 ~~~~D  106 (459)
T KOG4340|consen  102 FLLLD  106 (459)
T ss_pred             HHhcC
Confidence            55443

>PRK10941 hypothetical protein; Provisional

Probab=88.85  E-value=1.5  Score=45.29  Aligned_cols=62  Identities=8%  Similarity=-0.068  Sum_probs=57.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS  476 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~  476 (540)
                      .+.+++++|.++.+..+.++|+++.-+...|.++.+ .|.+..|..-++.-|+.-|+++.+-.
T Consensus       192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            355899999999999999999999999999998885 99999999999999999999998754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=0.83  Score=49.61  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .+|.-|+.+++-.+..+-+.. .+-.-+|.+++. .|||++|...|+-+.+.+--+++.+.|+|...+- .|.|.+|...
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~  113 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI  113 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence            456777777777666544333 333445667774 9999999999999999888889999999986654 6789999776


Q ss_pred             HHHHHHhCCCCHH---HHHHHHHHH
Q 009204          496 YQQAMAAEPNSSS---YASKYASFL  517 (540)
Q Consensus       496 feKALeLDPdnpe---al~NLA~~L  517 (540)
                      -.+    .|++|-   .++++|+-+
T Consensus       114 ~~k----a~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen  114 AEK----APKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             Hhh----CCCChHHHHHHHHHHHHh
Confidence            555    466654   456666543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.21  E-value=0.23  Score=53.12  Aligned_cols=74  Identities=24%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ..|.+++|++.|-+||+++|..+..|.+.+.++.. .++..+|++-+..|+.++|+.+.-+--.+.+...+|..+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            48999999999999999999999999999998765 567999999999999999987764333333334445543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.16  E-value=7.6  Score=41.51  Aligned_cols=78  Identities=21%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             HHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---------------------H---HHHHHHHH
Q 009204          430 VAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-----DPPD---------------------A---EALSQYAD  480 (540)
Q Consensus       430 LalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL-----DPnd---------------------A---eAl~NLA~  480 (540)
                      |+.+|-+.+.+..++.++.. +||++.|.++.+|||-.     .|..                     .   .++..+..
T Consensus        33 l~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            45678888888888887774 88888888888887631     1211                     1   13333444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPN-SSSY  509 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPd-npea  509 (540)
                      .+. .+|-+..|.++-+-.+.+||. +|..
T Consensus       112 ~L~-~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  112 SLG-RRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHH-hcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            433 477888888888888888887 6653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.15  E-value=6.2  Score=44.99  Aligned_cols=108  Identities=11%  Similarity=0.079  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHc--CCCC-HHHHHHHHHHHHHHcCC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEE---CFKRAIQS--DPPD-AEALSQYADFLWLVRKD  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe---~feRALeL--DPnd-AeAl~NLA~~L~~~rGD  488 (540)
                      ..|+++.|..+|++....-|+...+-.-.+...++ .|..+.+-.   ++.....-  +++- ...+.+++.+.+..+++
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d  456 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED  456 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence            34788888888888888778877777777777774 787777773   33222221  1111 22455677777778899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      .+.|...+.+|+...|++...+..+-.+...++..
T Consensus       457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~  491 (577)
T KOG1258|consen  457 ADLARIILLEANDILPDCKVLYLELIRFELIQPSG  491 (577)
T ss_pred             HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999998887743

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.10  E-value=8.8  Score=43.34  Aligned_cols=65  Identities=20%  Similarity=0.353  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF  481 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~  481 (540)
                      +.+.+-...|.++|+..|+++++|..-|.-.++..-..+.|...|.++|+.+|+.+..|.-|-.+
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            33667778999999999999999998888777634448999999999999999999998766553

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.90  E-value=2.6  Score=42.34  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHcCCHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-ALSQYADFLWLVRKDLW  490 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe-Al~NLA~~L~~~rGD~E  490 (540)
                      +.+++++|+..++.++...-+.-   .+-..+|.++.. +|.+|+|...+..--.  ++... .....|.++. .+||-+
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill-~kg~k~  176 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGDILL-AKGDKQ  176 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH-HcCchH
Confidence            45899999999999997533221   244568888885 9999999988776533  22222 2233477665 479999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 009204          491 AAEETYQQAMAAEPNSS  507 (540)
Q Consensus       491 EAee~feKALeLDPdnp  507 (540)
                      +|...|++|++.++..+
T Consensus       177 ~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         177 EARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHccCChH
Confidence            99999999999986544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.63  E-value=5.4  Score=44.02  Aligned_cols=125  Identities=18%  Similarity=0.043  Sum_probs=84.7

Q ss_pred             CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCH
Q 009204          396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ---SDPPDA  472 (540)
Q Consensus       396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe---LDPndA  472 (540)
                      |||+...=  .-...|+....|..+.|..+-++|-...|.-+.++...=.-.+. .||++.|+++.+...+   +.++-+
T Consensus       149 dPEtRllG--LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdWd~AlkLvd~~~~~~vie~~~a  225 (531)
T COG3898         149 DPETRLLG--LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDWDGALKLVDAQRAAKVIEKDVA  225 (531)
T ss_pred             ChHHHHHh--HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhchhhH
Confidence            66664321  22446666777999999999999999999888766544334553 8999999988877665   345544


Q ss_pred             HHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          473 EALS---QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       473 eAl~---NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +-..   .-+.......-|...|...-.++++++|+...+..--+..|+..|+.
T Consensus       226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~  279 (531)
T COG3898         226 ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL  279 (531)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence            3211   01111112235788888888888888888888887888888888874

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.52  E-value=3.6  Score=42.96  Aligned_cols=107  Identities=17%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH-HHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLL------NYAQFLHLVTKDYDRAEECFKRAIQS-----DPPDAE-ALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~all------NLA~~L~~~~GD~deAEe~feRALeL-----DPndAe-Al~NLA~~L~  483 (540)
                      ...|++|..++++|++-.-+|...+.      .-|.++. ....+.++..+|++|..+     .|+-+. ++-.-|.++ 
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-  121 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-  121 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-
Confidence            46899999999999976555443322      2233334 588899999999999986     333332 444445443 


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et  525 (540)
                      + ..++++|+++|++++.+--..      .+.+...+.+|.+..++++
T Consensus       122 e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen  122 E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            3 457999999999998863221      2345666777777777654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=87.40  E-value=1.4  Score=28.98  Aligned_cols=28  Identities=32%  Similarity=0.589  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          453 DYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       453 D~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      +.++|...|++++...|.++..|..|+.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4455555555555555555555554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.35  E-value=3.9  Score=39.14  Aligned_cols=75  Identities=16%  Similarity=0.085  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-cCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204          436 NPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQ-SDPPDAEA-LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       436 Np~allNLA~~L~~--~~GD~deAEe~feRALe-LDPndAeA-l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~  511 (540)
                      .....+|||+.+..  ...|..+-+.+++..++ .+|..-.- ++.+|..++. .++|++|++|.+..++.+|+|.++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34667788887752  23456678888888886 55555433 3334555554 56799999999999999998887653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.13  E-value=5.4  Score=38.44  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~  489 (540)
                      .+++++++.+++..=-+.|+.+.+..--|.++. ..|++++|...|+...+-.+..+-....++..|+ .+||.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~-al~Dp   94 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLN-AKGDA   94 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH-hcCCh
Confidence            467888888888777788998888777777766 5999999999999998888887776666776554 46653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.87  E-value=1.6  Score=28.67  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA~~  516 (540)
                      +.++|...|++++...|.++..|..|+.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45556666666666666666666655554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.73  E-value=0.99  Score=50.62  Aligned_cols=105  Identities=10%  Similarity=0.015  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHHcCCH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA-IQSDPP--------DAEALSQYADFLWLVRKDL  489 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRA-LeLDPn--------dAeAl~NLA~~L~~~rGD~  489 (540)
                      ...+....+.++-..-+.+.++.-.+++.| ..|++.+|.+.+... |.-.|.        ...+++|+|.+.+. .+.|
T Consensus       222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y  299 (696)
T KOG2471|consen  222 LKLAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCY  299 (696)
T ss_pred             HHHHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhH
Confidence            344555556666666677788888899988 599999999887653 333454        23467899988775 6789


Q ss_pred             HHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCCcc
Q 009204          490 WAAEETYQQAMA---------AEP---------NSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       490 EEAee~feKALe---------LDP---------dnpeal~NLA~~L~~~GR~Et  525 (540)
                      ..+..+|.+|++         +.|         ...++++|.|..|...||+-.
T Consensus       300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~  353 (696)
T KOG2471|consen  300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL  353 (696)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH
Confidence            999999999996         112         344689999999999999864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.72  E-value=5  Score=34.36  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=36.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204          451 TKDYDRAEECFKRAIQSDPP---------DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP  504 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPn---------dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP  504 (540)
                      .||+.+|.+.+.+.......         ...++.++|.+.. ..|++++|+..+++|+++.-
T Consensus        11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence            78888887766666654211         2345666776554 46888888888888888754

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=86.66  E-value=1.4  Score=50.49  Aligned_cols=102  Identities=19%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204          421 RTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE--ALSQYADFLWLVRKDLWAAEETYQQ  498 (540)
Q Consensus       421 eAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe--Al~NLA~~L~~~rGD~EEAee~feK  498 (540)
                      ....+.-.+++..|.+...+ ++|.+|.+.+|+.-+|..|+.+|+-..|.+..  ++..+|.+|.. .|...+|--++..
T Consensus       197 ~~~~~~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhA  274 (886)
T KOG4507|consen  197 DIGHLIHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHA  274 (886)
T ss_pred             HHHHHHHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeeh
Confidence            33456667888888776655 56777777899999999999999998887765  67778888764 7888889999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          499 AMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       499 ALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |+.-.|.-+.-++.++.++.+.|.+.
T Consensus       275 A~~dA~~~t~n~y~l~~i~aml~~~N  300 (886)
T KOG4507|consen  275 ALDDADFFTSNYYTLGNIYAMLGEYN  300 (886)
T ss_pred             hccCCccccccceeHHHHHHHHhhhh
Confidence            99988877777888899988888765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=86.00  E-value=3.7  Score=48.75  Aligned_cols=62  Identities=24%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHcCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRA----------IQSDPP----------DAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRA----------LeLDPn----------dAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      ..|++||..|. ..+|.+.|++||+++          |.-+|.          |+..|...|. |.+..|+.+.|+.+|.
T Consensus       859 ~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq-YlES~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  859 NTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ-YLESVGEMDAALSFYS  936 (1416)
T ss_pred             hhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH-HHhcccchHHHHHHHH
Confidence            46889999888 499999999999985          222343          3344555565 4466899999999998


Q ss_pred             HHHH
Q 009204          498 QAMA  501 (540)
Q Consensus       498 KALe  501 (540)
                      .|-.
T Consensus       937 ~A~D  940 (1416)
T KOG3617|consen  937 SAKD  940 (1416)
T ss_pred             Hhhh
Confidence            8754

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=85.50  E-value=3.3  Score=37.94  Aligned_cols=80  Identities=18%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLVRK----------DLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~rG----------D~EEAee~feKALeLDPdnpeal  510 (540)
                      |.-++ ..|++-+|++..+..+..++++.   ..+..-|.+++.+..          -+-.|+++|.++..+.|+.+..+
T Consensus         3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45567 49999999999999999999888   445555665543321          25569999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 009204          511 SKYASFLWNTGGEE  524 (540)
Q Consensus       511 ~NLA~~L~~~GR~E  524 (540)
                      +.+|.=+.-...|+
T Consensus        82 ~~la~~l~s~~~Yk   95 (111)
T PF04781_consen   82 FELASQLGSVKYYK   95 (111)
T ss_pred             HHHHHHhhhHHHHH
Confidence            99988643333333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.38  E-value=8.9  Score=43.76  Aligned_cols=129  Identities=14%  Similarity=0.114  Sum_probs=104.8

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-PPDA  472 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD-PndA  472 (540)
                      -|++..++.+..-..-   ....|+++...-.|++++--=....+.|..|+..+. ..|+.+-|...+.+|.++. |.-+
T Consensus       291 pl~~aql~nw~~yLdf---~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~  366 (577)
T KOG1258|consen  291 PLDQAQLKNWRYYLDF---EITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTP  366 (577)
T ss_pred             cccHHHHHHHHHHhhh---hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCc
Confidence            3455555555332111   234599999999999999877788899999999888 4899999999999999975 7778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      .++..++.+. +..|+++.|..+|++..+--|+...+-...+....+.|..++|.
T Consensus       367 ~i~L~~a~f~-e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  367 IIHLLEARFE-ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHHHHH-HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            8888788764 56789999999999999988999999888888999999988776

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.34  E-value=9  Score=38.52  Aligned_cols=68  Identities=24%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 009204          438 LLLLNYAQFLHLVT------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK----------------DLWAAEET  495 (540)
Q Consensus       438 ~allNLA~~L~~~~------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG----------------D~EEAee~  495 (540)
                      .++.-+|.++.. .      ++.+++..+|++|++++|+...+|..+|.++.....                -...|+++
T Consensus       253 ~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~  331 (352)
T PF02259_consen  253 KAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG  331 (352)
T ss_pred             HHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence            455667776663 5      889999999999999999999999999986643211                12458899


Q ss_pred             HHHHHHhCCCC
Q 009204          496 YQQAMAAEPNS  506 (540)
Q Consensus       496 feKALeLDPdn  506 (540)
                      |-+|+...+.+
T Consensus       332 y~~al~~~~~~  342 (352)
T PF02259_consen  332 YLKALSLGSKY  342 (352)
T ss_pred             HHHHHhhCCCc
Confidence            99999998883

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.93  E-value=4.5  Score=48.11  Aligned_cols=83  Identities=20%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHH----------HHcCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------
Q 009204          417 MDYFRTDLLYQMG----------VAEEPN----------NPLLLLNYAQFLHLVTKDYDRAEECFKRAI-----------  465 (540)
Q Consensus       417 Gd~eeAe~lYqkA----------LalDP~----------Np~allNLA~~L~~~~GD~deAEe~feRAL-----------  465 (540)
                      ++.+.|+.+|+++          |..+|.          ++.+|.-.|+.+. ..|+.|.|+.+|..|-           
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVRIKCI  950 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhheeeEee
Confidence            6788899998875          444553          4556666788777 7999999999998853           


Q ss_pred             ----------HcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204          466 ----------QSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       466 ----------eLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe  501 (540)
                                .-...|-.+.+++|.-| +..|+.-+|+.+|-+|-.
T Consensus       951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHH
Confidence                      34677778888999854 567999999999888754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.33  E-value=7  Score=40.64  Aligned_cols=93  Identities=10%  Similarity=0.052  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHH-----HHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLL------LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-AEAL-----SQYADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~a------llNLA~~L~~~~GD~deAEe~feRALeLDPnd-AeAl-----~NLA~~L  482 (540)
                      +..+..+|..++++||.+.-+-...      +..+|.+|.....|+++|+.+|++|-+.-..+ ....     ..-|. |
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~-y  163 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ-Y  163 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH-H
Confidence            4467889999999999886554332      33577777755689999999999998863333 2222     22222 2


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 009204          483 WLVRKDLWAAEETYQQAMAAEPNSSS  508 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDPdnpe  508 (540)
                      ..+.++|.+|+..|++.....-+|+-
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchH
Confidence            33457899999999999887777664

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.15  E-value=13  Score=37.72  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHc----CCCCH----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc----CC---CCH------
Q 009204          415 DYMDYFRTDLLYQMGVAE----EPNNP----LLLLNYAQFLHLVTK-DYDRAEECFKRAIQS----DP---PDA------  472 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal----DP~Np----~allNLA~~L~~~~G-D~deAEe~feRALeL----DP---ndA------  472 (540)
                      .+|+++.|+-+|.|+-..    +|+..    ..++|.|.-++ ..+ +++.|..++++|.++    .+   ..+      
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            458889999988887554    34433    24566777667 377 899999999998887    22   222      


Q ss_pred             -HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Q 009204          473 -EALSQYADFLWLVR--KDLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       473 -eAl~NLA~~L~~~r--GD~EEAee~feKALeLDPdnpeal  510 (540)
                       .++..++..+....  ...++|..+++.+-.--|+.+..+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             23444555544311  235556667767766778777765

It is also involved in sporulation [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=82.38  E-value=23  Score=39.40  Aligned_cols=101  Identities=13%  Similarity=0.051  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      .+...|...-.+++++.|+...+-..-|..|+. .|+..++-..++.+.+.+| ++++...|-.  . ..|  +.++.-+
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~--a-r~g--dta~dRl  315 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEP-HPDIALLYVR--A-RSG--DTALDRL  315 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCC-ChHHHHHHHH--h-cCC--CcHHHHH
Confidence            347888889999999999998888888888994 9999999999999999998 4555443322  1 234  4455555


Q ss_pred             HHH---HHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          497 QQA---MAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       497 eKA---LeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +++   ..+.|+|.+..+..+..-+..|++-
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~  346 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFS  346 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence            555   4468999999888888888877753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.67  E-value=2.2  Score=48.38  Aligned_cols=75  Identities=21%  Similarity=0.088  Sum_probs=64.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL--VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~--~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .+....|+..|.+|++.-|.....|.|++.++.+  ++||.-.|+.--..|+++||..-.+|+.++.+|.+++++.+
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            3445688999999999999999999999987654  34677778888889999999999999999999999999753

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.48  E-value=5.8  Score=39.82  Aligned_cols=72  Identities=17%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          420 FRTDLLYQMGVAE-EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP----DAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       420 eeAe~lYqkALal-DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn----dAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ++|...|.++=.. .=++++..+.+|.+|.  ..|.++|+.+|.++|++.+.    |++++..|+.++.. .|+++.|--
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AYi  199 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAYI  199 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhhh
Confidence            3444444433221 2357888889998544  89999999999999998544    48999999998764 688888743

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.43  E-value=19  Score=37.28  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=73.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHH--------
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA---LSQYADFLWL--------  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA---l~NLA~~L~~--------  484 (540)
                      .+...+|+...+.-++.+|.|.....-|-++|+ ..|++++|...++-+-+++|++..-   |.++-.....        
T Consensus        14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~   92 (273)
T COG4455          14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGG   92 (273)
T ss_pred             hccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccC
Confidence            367899999999999999999998888888888 5999999999999999999999653   3332211100        


Q ss_pred             -----HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 009204          485 -----VRKDLWAAEETYQQAMAAEPN-SSSYASKYAS  515 (540)
Q Consensus       485 -----~rGD~EEAee~feKALeLDPd-npeal~NLA~  515 (540)
                           ..|...+=+..+.+|++++-+ .-++...+..
T Consensus        93 ~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alre  129 (273)
T COG4455          93 AVPGFLGGPSPEWVAALLAALALHSDGAGEARTALRE  129 (273)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHH
Confidence                 024677777788888888776 4444444333

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=80.55  E-value=5.3  Score=40.24  Aligned_cols=48  Identities=29%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009204          419 YFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQ  466 (540)
Q Consensus       419 ~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALe  466 (540)
                      .++|...|++|+.+     .|.||.   +.+|++.|++...|+.++|.+..++|+.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35667777777653     566663   5667777777777787777777777765

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=80.42  E-value=12  Score=31.94  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHc----CCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009204          415 DYMDYFRTDLLYQMGVAE----EPNN-----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP  469 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal----DP~N-----p~allNLA~~L~~~~GD~deAEe~feRALeLDP  469 (540)
                      +.++|..|.+.+.+.+..    ....     ..++.++|.+.. ..|++++|...+++||++..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence            348888886666665543    3222     456778898877 59999999999999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-08
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-04
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	1e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 78/577 (13%), Positives = 165/577 (28%), Gaps = 191/577 (33%)

Query: 22  SQKPASFMSSASFTTRNESNPHRTFRLKNW----------------GFG-SC----VSRG 60
            Q+   +  +  F   N S      +L+                  G G +     V   
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL- 172

Query: 61  NSIKRSCSANFNEF--------LDDEFAKQAEELARRLDIMDDHVDNHDHDQNNKETAYA 112
            S K  C  +F  F          +   +  ++L  ++D   +     DH  N K   ++
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHS 229

Query: 113 VRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRANCVGIPLSLRM 172
           ++              YE                               NC+   L L  
Sbjct: 230 IQA---ELRRLLKSKPYE-------------------------------NCL---LVLLN 252

Query: 173 IKRKQKWKEGFGDAEDFAYCSV-----NKAFSSLVFIIRELQACALHIREGLYCEDLKEI 227
           ++  + W   F    + + C +      K  +  +           H    L  +++K +
Sbjct: 253 VQNAKAWN-AF----NLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 228 ISKMQREMNSSFVWLFQQVFSRTPTLMVYVMILLANFTVHSMSNNVGFAASLSPG----- 282
           + K          +L  +     P  ++            S+      A S+  G     
Sbjct: 307 LLK----------YLDCRPQD-LPREVLTTNPR-----RLSI-----IAESIRDGLATWD 345

Query: 283 -----SSETITETISLTGEKDQETSEIDSSTMKNLL--LSISDIGNDGDGKKVSRISSGN 335
                + + +T  I  +         ++ +  + +   LS+                   
Sbjct: 346 NWKHVNCDKLTTIIESSLN------VLEPAEYRKMFDRLSV------------------- 380

Query: 336 ADKRFSRSSPSIQYPSFIPYEMSEV---SSGKQFPM-------NKEELDLWN-----SVL 380
               F  S+        IP  +  +      K   M           ++        S+ 
Sbjct: 381 ----FPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 381 DEALRIQEESEYRILDHETM-QHFVTPVTVKLE--PDDYMD-YFRTDLLYQMGVAEEPNN 436
              L ++ + E     H ++  H+  P T   +     Y+D YF + + + +   E P  
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 437 ----PLLLLNYAQFL-----HLVTKDYDRAE--------ECFKRAIQ-SDPPDAEALSQY 478
                ++ L++ +FL     H  T               + +K  I  +DP     ++  
Sbjct: 490 MTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 479 ADFLWLVRKDLWAAEET--YQQAMAAEPNSSSYASKY 513
            DFL  + ++L  ++ T   + A+ A  + + +   +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMA-EDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 70/590 (11%), Positives = 158/590 (26%), Gaps = 220/590 (37%)

Query: 9   IQNSVQIIVPY-------------ALSQ-KPASF-----M-----SS-ASFTTRNES--- 40
           + N  Q+   Y             AL + +PA       +     +  A     +     
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 41  -NPHRTFRLKNW-GFGSCVSRGNSIKR--------------SCSANFNEFLDDEFAKQA- 83
               + F    W    +C S    ++                   + N  L     +   
Sbjct: 179 KMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 84  ------EELARRLDIMDDHVDNHDHDQNNKETAYAV----------RDVNMGFSMQFMLP 127
                 +     L ++ + V        N +   A           R   +   +     
Sbjct: 235 RRLLKSKPYENCLLVLLN-V-------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 128 KYELLEHNLLGIRPEPVDWPEREEIVRVNIEQRAN------CVGIPLSLRMIKRKQKWKE 181
            +  L+H+ + + P+     E + ++   ++ R            P  L +I      ++
Sbjct: 287 THISLDHHSMTLTPD-----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RD 339

Query: 182 GFGDAEDFAYCSVNKAFSSLVFIIRELQACALHIREGLYCEDLKEIISKMQREMNSSFVW 241
           G    +++ + + +K       +   +++        L   + ++               
Sbjct: 340 GLATWDNWKHVNCDK-------LTTIIESSL----NVLEPAEYRK--------------- 373

Query: 242 LFQQ--VFSR-----TPTLMVY--------VMILLANFTVHSMSNNVGFAASLSPGSSET 286
           +F +  VF       T  L +         VM+++     +S+                 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---------------- 417

Query: 287 ITETISLTGEKDQETSEIDSSTMKNLLLSISDIGNDGDGKKVSR-------ISSGNADKR 339
                    EK            K   +SI  I  +   K  +        +   N  K 
Sbjct: 418 ---------EKQP----------KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 340 FSRSSPSIQYP-----SFIPYEMSEVSSGKQFPM-NKEELDL-WNSVLDEALR---IQEE 389
           F        Y      S I + +  +   ++  +     LD  +   L++ +R       
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWN 515

Query: 390 SEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL 449
           +   IL+  T+Q              Y  Y   +         +P    L+     FL  
Sbjct: 516 ASGSILN--TLQQL----------KFYKPYICDN---------DPKYERLVNAILDFLPK 554

Query: 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA 499
           + ++   ++  +   ++       AL    + ++         EE ++Q 
Sbjct: 555 IEENLICSK--YTDLLRI------ALMAEDEAIF---------EEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 76/626 (12%), Positives = 164/626 (26%), Gaps = 224/626 (35%)

Query: 38  NESNP-HRTFRLKNWGFGSCVSRGNSIKRSCSANFNEFLDDEFAKQAEELARRL------ 90
              +    T RL    F + +S+   +         +F+++      + L   +      
Sbjct: 56  MSKDAVSGTLRL----FWTLLSKQEEM-------VQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 91  --DIMDDHVDNHDHDQNNKETAYAVRDVNMGFSMQFMLPKYELLEHNLLGIRPEPVDWPE 148
              +   +++  D   N+ +  +A  +V+        L  Y  L   LL +RP       
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQV-FAKYNVSR-------LQPYLKLRQALLELRPAK----- 151

Query: 149 REEIVRVNIEQRANCVGIPLSLRMIKRKQKWKEGFGDAEDFAYCSVNKAFSSLVFIIREL 208
               V ++        G      ++        G G           K  + +      L
Sbjct: 152 ---NVLID--------G------VL--------GSG-----------K--TWVA-----L 168

Query: 209 QACALHIREGLYCEDLKEIISKMQREMNSSFVWL-FQQVFSRTPTLMVYVMILLANFTVH 267
             C  +               K+Q +M+    WL  +     +P     V+ +L      
Sbjct: 169 DVCLSY---------------KVQCKMDFKIFWLNLKNC--NSPET---VLEMLQKLLYQ 208

Query: 268 SMSNNVGFAASLSPGSSETITETISLTGEKDQETSEIDSSTMKNLLLSISDIGN------ 321
              N        +  S  +    + +   + +    + S   +N LL + ++ N      
Sbjct: 209 IDPN-------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 322 -DGD--------GKKVSRISSGNADKRFSRSSPSIQYPSFIPYEMSEVSSGKQFPMNKEE 372
            +           K+V+   S       S    S    +  P E+  +   K      ++
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLL-KYLDCRPQD 317

Query: 373 LD-------------LWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDY 419
           L              +  S+ D          ++ ++ + +   +      LEP +Y   
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 420 FR-------------------------------TDLLYQMGVAEEPNNPLLLLNYAQFLH 448
           F                                 + L++  + E+      +   + +L 
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 449 LVTKDYDRAE------ECFKRAIQSDPPD-----------------------AEALSQ-- 477
           L  K  +         + +      D  D                        E ++   
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 478 --YADFLWLVRK-----DLWAAE----------ETYQQAMA-AEPNSSSYASKYASFLWN 519
             + DF +L +K       W A           + Y+  +   +P      +    FL  
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 520 TG-----GEETCFPLSSSQDDYNHIV 540
                   + T     +   +   I 
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIF 580

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y+  + + PNN   L   A+ + +       A   +++ +Q +  +  A     ++ +L 
Sbjct: 77  YKELLQKAPNNVDCLEACAE-MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135

Query: 486 RKDLWAAEETYQQAMAAEPNSS 507
            +      ET  + +++     
Sbjct: 136 AEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 409 VKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD 468
           + L  D    Y+     +         +  L    A       ++YD+A   +K  +Q  
Sbjct: 31  IALNIDRTEMYY-----WTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKA 84

Query: 469 PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
           P + + L   A+ + + R     A   Y++ +  E ++ +      ++ + T  +E
Sbjct: 85  PNNVDCLEACAE-MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 14/114 (12%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           ++  P++        ++    G  ++             +N    +    + +L  +   
Sbjct: 81  LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
           +  E   + + S      A  +      L       A  + Q+ +   P++ + 
Sbjct: 141 KKLETDYKKLSSPTKMQYARYRDGL-SKLFTTRYEKARNSLQKVILRFPSTEAQ 193

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
            +  +A+  +N LL     +      + +D A    + A+  DP  + A       L   
Sbjct: 8   LEAMLAQGTDNMLLRFTLGKTY-AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG- 65

Query: 486 RKDLWAAEETYQQAMAAEPN 505
           + D   A + ++  +AA  +
Sbjct: 66  QGDRAGARQAWESGLAAAQS 85

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL-WLVRKDLW 490
           E+P +P      AQ  HL   +  RA   F+  +++DP               L R D  
Sbjct: 2   EDPEDPFTRYALAQ-EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD-- 58

Query: 491 AAEETYQQAMAAEPNSSSYASKYA 514
            A +TY Q +          ++  
Sbjct: 59  DAIDTYAQGIEVARE---EGTQKD 79

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
             +  V   P + +  L  A    L   D    E   +R +   P   EA+++    +  
Sbjct: 11  QLRAAVRHRPQDFVAWLMLAD-AELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR-VRW 68

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
            ++    A    QQA  A P     A      L + G
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
             Q G+A  P +P  +    + +    + +  A    ++A  + P            L  
Sbjct: 45  AVQRGLALHPGHPEAVARLGR-VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED 103

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
                 AA   Y +A    P      ++  ++        
Sbjct: 104 -AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ 477
            +    +L Q      P +P + L     L       + A   + RA Q  P +    +Q
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEAAAAAYTRAHQLLPEEPYITAQ 130

Query: 478 YADFLWLVRKDLWAAEETYQQAMAAEPNSSS 508
             ++   +         + Q   A      +
Sbjct: 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
           +T D  R     + A++  P D  A    AD   L   D  A E   Q+ +A  P     
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLAD-AELGMGDTTAGEMAVQRGLALHPGHPEA 59

Query: 510 ASKYASFLWNTG 521
            ++     W   
Sbjct: 60  VARLGRVRWTQQ 71

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
            Q  +   P N        +  +L   DY  +   +++A+Q    +AE  +  A  L+  
Sbjct: 33  LQDKIRANPQNSEQWALLGE-YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91

Query: 486 --RKDLWAAEETYQQAMAAEPN 505
             +           +A+A + N
Sbjct: 92  ASQHMTAQTRAMIDKALALDSN 113

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 19/153 (12%)

Query: 376 WNSVLDEALRIQEESEYRILDHETMQHFVTPVT--VKLEPDD----------YMDYFRTD 423
           W +V  E  R ++    +    +  +  +  +   ++  P +          Y+      
Sbjct: 3   WQAVRAEYQRQRDPLH-QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS 61

Query: 424 ---LLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQY 478
              L Y+  +     N  L    A  L+         +      +A+  D  +  AL   
Sbjct: 62  NSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121

Query: 479 ADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511
           A     ++ +   A E +Q+ M       +   
Sbjct: 122 A-SDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 4/95 (4%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           ++Q    +     LLL   A   H+    ++ AE   + A+  D    E L         
Sbjct: 188 IFQEMADKCSPTLLLLNGQAA-CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 485 VRKDLWAAEETYQQAMAAEPNS---SSYASKYASF 516
           + K          Q   A  +      Y +K   F
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF 281

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 421 RTDL---LYQMGVAEEPNNPLLLLNYAQFLHLVTKD-YDRAEECFKRAIQSDPPDAEALS 476
           R DL     +    ++ +  L  L  A        +    A   F+       P    L+
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN 204

Query: 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
             A    + +    AAE   Q+A+  +               + G
Sbjct: 205 GQAACH-MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 17/110 (15%), Positives = 34/110 (30%)

Query: 417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476
           M Y +   +Y   +A E  +P L+           +        FK+A +          
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394

Query: 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC 526
             A   +   KD   A + ++  +    +   Y   Y  +L +   +   
Sbjct: 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS---DPPDAEA 474
           D      ++++G+ +  + P  +L Y  +L     + +     F+R + S    P  +  
Sbjct: 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFERVLTSGSLPPEKSGE 464

Query: 475 LSQ-YADFLWLVRKDLWAAEETYQQAMAAEPN------SSSYASKYASF-LWNTGGEE 524
           +   +  F      DL +  +  ++   A         ++    +Y    L+     E
Sbjct: 465 IWARFLAFESN-IGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASE 521

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 417 MDYFRTDLLYQMGVAEEPNNPLLL-LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEAL 475
           M Y +   +Y   +A E  +P L+ + Y +F     +        FK+A +         
Sbjct: 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-RRAEGIKSGRMIFKKAREDARTRHHVY 171

Query: 476 SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
              A   +   KD   A + ++  +    +   Y   Y  +L +   + 
Sbjct: 172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 16/130 (12%)

Query: 412 EPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQF-------------LHLVTKDYDRAE 458
             D  +   R    Y+  +    ++P +    AQ+             ++      D A 
Sbjct: 25  TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84

Query: 459 ECFKRAIQSDPPDAEAL-SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA-SKYASF 516
             ++RAI +       L   YAD+    R         Y + +A E    +    +Y  F
Sbjct: 85  NIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 143

Query: 517 LWNTGGEETC 526
                G ++ 
Sbjct: 144 ARRAEGIKSG 153

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           ++Q     +  +    L            Y++A + +      D  +       A+   L
Sbjct: 40  IFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDINEPRFPFHAAE-CHL 97

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYA 514
              DL  AE  +  A A      ++ +  A
Sbjct: 98  QLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
             M      +    L       +     +D A++ F+     D  DA             
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQ-AGKWDDAQKIFQALCMLDHYDARYFLGLGACR-QS 64

Query: 486 RKDLWAAEETYQQAMAAEPNS 506
                 A ++Y      + N 
Sbjct: 65  LGLYEQALQSYSYGALMDINE 85

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 426 YQMGVAEEPNNPLLLLNYA---QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFL 482
            +  +   P+N  L +  A     +    ++    E+  + A++  P   + L   A F 
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257

Query: 483 WLVRKDLWAAEETYQQAMAAEPNSS 507
              + +   A E  ++A+   PN++
Sbjct: 258 -RRKDEPDKAIELLKKALEYIPNNA 281

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALS---QYADFL 482
            +       N   +    A  LH +   Y+ AE  F++    +           +Y +F 
Sbjct: 323 LKKADEANDNLFRVCSILAS-LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381

Query: 483 WLVRKDLWAAEETYQQAMAAEPNSS 507
               K    A   + + +     S 
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKSR 406

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 431 AEEPNNPLLLLNYAQ-FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-- 487
                +P L        L       +RA+ CF++A++  P + E  S  A   + +    
Sbjct: 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189

Query: 488 DLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE 524
               A +  +QA+   P++       A  L     E 
Sbjct: 190 PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG 226

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
           ++  + ++P NP      A   + +        A +  ++AI+ +P +       A  L 
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 484 LVRKDLWA---AEETYQQAMAAEPNSSSYASKYASFLWNTG 521
            +R++       E+  ++A+   P  +      A F     
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 9/120 (7%)

Query: 409 VKLEPDDYMDYFRTDLLY-QMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS 467
           ++  P++   + +    Y              +    + L L       A    K+A ++
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL----IGHAVAHLKKADEA 329

Query: 468 DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS---KYASFLWNTGGEE 524
           +       S  A  L  +      AE  +Q+  + E    +      +Y +F       E
Sbjct: 330 NDNLFRVCSILAS-LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA 479
           L +  + + P    +L + A+F      + D+A E  K+A++  P +A    Q  
Sbjct: 235 LVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIG 288

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 4/156 (2%)

Query: 356 EMSEVSSGKQFPMNKEELDLWNSVLDEALRIQEESE--YRILDHETMQHFVTPVTVKLEP 413
            M+ ++ G+Q        D          ++Q   +  Y   D     H V     K + 
Sbjct: 20  HMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQ- 78

Query: 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE 473
           D   +  +T    +  +         L+   + L++       AE    +A++ +P   E
Sbjct: 79  DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138

Query: 474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
           A +Q  +  W  + D+ +A   +  A+    N  S 
Sbjct: 139 AWNQLGEVYWK-KGDVTSAHTCFSGALTHCKNKVSL 173

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 18/114 (15%), Positives = 27/114 (23%), Gaps = 15/114 (13%)

Query: 409 VKLEPDDYMD-YFRTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
            ++  D     Y      YQ G  E+              +    L            YD
Sbjct: 14  NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYD 72

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
            A   +      D  +       A+   L   +L  AE     A     N   +
Sbjct: 73  LAIHSYSYGAVMDIXEPRFPFHAAE-CLLQXGELAEAESGLFLAQELIANXPEF 125

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
                  +EP+N  +LL  +  +H   +  DR+      AI+ +P  AEA S   + ++ 
Sbjct: 21  HCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN-VYK 78

Query: 485 VRKDLWAAEETYQQAMAAEPN 505
            R  L  A E Y+ A+  +P+
Sbjct: 79  ERGQLQEAIEHYRHALRLKPD 99

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           ++L+PD    Y      L   G  E             P+   +  +    L       +
Sbjct: 94  LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-LGRLE 152

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
            A+ C+ +AI++ P  A A S         + ++W A   +++A+  +PN  
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVF-NAQGEIWLAIHHFEKAVTLDPNFL 203

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           ++L+P     Y    + L + G   E            P +   L N A  +     + +
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-IKREQGNIE 322

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
            A   +++A++  P  A A S  A  L   +  L  A   Y++A+   P        +A 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT-------FAD 374

Query: 516 FLWNTG 521
              N G
Sbjct: 375 AYSNMG 380

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           +K  P     Y    ++  + G  +E            P+     +N A  L     D +
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA-AGDME 118

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
            A + +  A+Q +P      S   + L      L  A+  Y +A+  +PN +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLL-KALGRLEEAKACYLKAIETQPNFA 169

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           ++ +P+  + +     +    G                PN     +N    L    + +D
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK-EARIFD 220

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
           RA   + RA+   P  A      A  ++  +  +  A +TY++A+  +P+
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLAC-VYYEQGLIDLAIDTYRRAIELQPH 269

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA 499
            +  A   +    D++ AE    +  + +P +   L   +  +    + L  +      A
Sbjct: 2   PMELAHREYQ-AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLA 59

Query: 500 MAAEPNSSSYASKYASFLWNTG 521
           +   P  +   S   +     G
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERG 81

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           V L+P+    Y    ++L +  + +             PN+ ++  N A   +      D
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLID 254

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
            A + ++RAI+  P   +A    A+     +  +  AE+ Y  A+   P        +A 
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLAN-ALKEKGSVAEAEDCYNTALRLCPT-------HAD 306

Query: 516 FLWNTG 521
            L N  
Sbjct: 307 SLNNLA 312

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
            +  +  +P N L  L  A+    + K  D+A+E F++A+   P  AE  + Y  FL   
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89

Query: 486 RKDLWAAEETYQQAMAAEPNSSSYASKY 513
                 +   + +A  A+P   +     
Sbjct: 90  LNRPAESMAYFDKA-LADPTYPTPYIAN 116

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512
           DY +A    + A++SDP +  A    A+    + K    A+E+++QA++ +P+S+   + 
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNN 81

Query: 513 YASFLWNTGGE 523
           Y  FL      
Sbjct: 82  YGWFLCGRLNR 92

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 452 KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511
             +  AE   KR++ + P    A  + A    L    L  A+  +++  +          
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKML-AGQLGDADYYFKKYQSRVEVLQ---- 181

Query: 512 KYASFLWN 519
             A  L  
Sbjct: 182 --ADDLLL 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y+  +   P       N    L    +D   A +C+ RAIQ +P  A+A S  A      
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCYTRAIQINPAFADAHSNLASIH-KD 123

Query: 486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
             ++  A  +Y+ A+  +P+        A  L    
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 429 GVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD 488
           G    P +   L N A        + + A   +++A++  P  A A S  A  L   +  
Sbjct: 1   GPGSCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGK 58

Query: 489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
           L  A   Y++A+   P        +A    N G
Sbjct: 59  LQEALMHYKEAIRISPT-------FADAYSNMG 84

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 8e-05
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y   +   P       N A        +   A   ++ A++  P   +A    A  L +V
Sbjct: 100 YTRAIQINPAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158

Query: 486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
                  +E  ++ ++   +     ++  S   +  
Sbjct: 159 CDWTD-YDERMKKLVSIVADQLE-KNRLPSVHPHHS 192

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
            ++     +  N   ++  A    +  + + +A + +  A      D   +         
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYA 510
           + K    A+E ++  +    +     
Sbjct: 117 L-KAPLKAKECFELVIQHSNDEKLKI 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 413 PDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA 472
               +D   +    +   A   +    + +YA +        + AE  F+     D  + 
Sbjct: 12  STAVIDAINSGATLKDINAIPDDMMDDIYSYA-YDFYNKGRIEEAEVFFRFLCIYDFYNV 70

Query: 473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS 506
           + +   A    + ++    A + Y  A A   N 
Sbjct: 71  DYIMGLAAIYQI-KEQFQQAADLYAVAFALGKND 103

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           ++  +    N P + L  A  L+   ++Y  A + +    Q    +A +L        + 
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV- 221

Query: 486 RKDLWAAEETYQQAMAAEPNS 506
            +D   A     Q     P S
Sbjct: 222 FEDRDTAASYGLQLKRLYPGS 242

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 452 KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS 511
           K   +A+E F+++++ +        + AD L+   ++   A + Y               
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-EREYVPARQYYDLFAQGGGQ------ 207

Query: 512 KYASFLWN 519
             A  L  
Sbjct: 208 -NARSLLL 214

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
            +  +  +P++       A        +   A+E +++A+ SD  +A  L+ Y  FL   
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNNYGGFL-YE 117

Query: 486 RKDLWAAEETYQQAMA 501
           +K    A +   +A  
Sbjct: 118 QKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512
           + ++A+   ++A++ DP  A+A +  A        +   A+E Y++A+A++  ++   + 
Sbjct: 52  NTEQAKVPLRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNN 110

Query: 513 YASFL 517
           Y  FL
Sbjct: 111 YGGFL 115

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLW 483
           Y+  +A +  N  +L NY  FL+   K Y+ A +    A Q    P  +           
Sbjct: 94  YRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS- 151

Query: 484 LVRKDLWAAEETYQQAMAAEPN 505
           L  K    A+E +++++    N
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRN 173

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 1/83 (1%)

Query: 424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
            L    V   P+NP+       +  +V    + A     +A   +     A   Y     
Sbjct: 77  YLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF- 135

Query: 484 LVRKDLWAAEETYQQAMAAEPNS 506
            V  +   A   Y  A       
Sbjct: 136 AVESEHDQAMAAYFTAAQLMKGC 158

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493
             N  ++++ A+  +    D+    +     ++ DP  A  L  +   L           
Sbjct: 19  QENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELF 76

Query: 494 ETYQQAMAAEPNS 506
               + +   P++
Sbjct: 77  YLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           L  + + ++P +   L  +   L       +       + +   P +  +      +  +
Sbjct: 44  LTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102

Query: 485 VRKDLWAAEETYQQAMAAEPN 505
           V      A     +A   E  
Sbjct: 103 VGHKNEHARRYLSKATTLEKT 123

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW 490
                   LL N       + K Y  A +  ++A+   P +A   S    ++  +  +  
Sbjct: 230 VTVDKWEPLLNNLGHVCRKL-KKYAEALDYHRQALVLIPQNASTYSAIG-YIHSLMGNFE 287

Query: 491 AAEETYQQAMAAEPNSS 507
            A + +  A+    + +
Sbjct: 288 NAVDYFHTALGLRRDDT 304

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y           L +L      + +T +   AE  F +A+   P D   + +        
Sbjct: 148 YFTAAQLMKGCHLPMLYIGL-EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA-FQ 205

Query: 486 RKDLWAAEETYQQAMAAEPNSSSYAS--KYASFLWNTG 521
             +   AE+ +  A+       +  +  K+   L N G
Sbjct: 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 28/128 (21%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           V  +PD+Y+ Y+ R  +   MG ++              +     L     L L     D
Sbjct: 30  VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH-LLLKQGKLD 88

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW--------------AAEETYQQAMA 501
            AE+ FK+ ++S+P + E     +  +                      AA     + + 
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

Query: 502 AEPNSSSY 509
                +  
Sbjct: 149 VCVWDAEL 156

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
            +   V  +P+N +     A  + L       A     + I        A  Q    L L
Sbjct: 25  QFHAAVDGDPDNYIAYYRRA-TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG-HLLL 82

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFL 517
            +  L  AE+ +++ + + P+        +  +
Sbjct: 83  KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 25/128 (19%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           +++   D      R +   + G   +             +N       +   +    D++
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LGDHE 205

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA-----------AEETYQQAMAAEP 504
            +    +  ++ D       + Y     L +    A           A   Y+  M  EP
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265

Query: 505 NSSSYASK 512
           + + Y  +
Sbjct: 266 SVAEYTVR 273

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 2/127 (1%)

Query: 381 DEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLL 440
           DE   +  +  Y     E      +   +KL    + D  R    Y   +     +  LL
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308

Query: 441 LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAM 500
           L  A  L +    +        + ++ DP + +    +   L     +           +
Sbjct: 309 LCKADTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLH-ESGEKNKLYLISNDLV 366

Query: 501 AAEPNSS 507
              P  +
Sbjct: 367 DRHPEKA 373

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           L +   + E        N       + K YD A +   + +     DA   +  A  ++L
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLSTNDANVHTAIA-LVYL 561

Query: 485 VRKDLWAAEETYQQAMAAEPN 505
            +K    A     +++A  PN
Sbjct: 562 HKKIPGLAITHLHESLAISPN 582

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 9/79 (11%)

Query: 424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
           L+    V   P   +  L    +   V      A   F ++   DP    A        W
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMDPQFGPA--------W 410

Query: 484 LVRKDLWAAEETYQQAMAA 502
           +     +A E  + QA++A
Sbjct: 411 IGFAHSFAIEGEHDQAISA 429

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493
               L  L      H+   +   A E  + +      D   L++     +  + D+  A 
Sbjct: 438 QGTHLPYLFLGM-QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN-KSDMQTAI 495

Query: 494 ETYQQAMAAEPNSSSYASKYASFLWNTG 521
             +Q A+     + S    +A+   N G
Sbjct: 496 NHFQNALLLVKKTQSNEKPWAATWANLG 523

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 16/128 (12%)

Query: 409 VKLEPDDYMDYFRTDLLYQMGVAEE--------------PNNPLLLLNYAQFLHLVTK-D 453
           + ++   Y  + +    + +   EE               +   L   Y   L+  +  D
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286

Query: 454 YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY 513
             R  E +  +I      ++ L   AD L  VR           + +  +P +      +
Sbjct: 287 ELRRAEDYLSSINGLEKSSDLLLCKADTL-FVRSRFIDVLAITTKILEIDPYNLDVYPLH 345

Query: 514 ASFLWNTG 521
            + L  +G
Sbjct: 346 LASLHESG 353

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493
                +     Q       ++DRA+EC+K A+  D    EA  Q      L   + W   
Sbjct: 197 KLEASMCYLRGQVYTN-LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255

Query: 494 ETYQQAMAAEPNSSSYASKYASFL 517
                +  ++ +++   S Y   L
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKL 279

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 28/140 (20%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           V  +PD+Y+ Y+ R  +   MG ++              +     L     L L     D
Sbjct: 53  VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG-HLLLKQGKLD 111

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLV--------------RKDLWAAEETYQQAMA 501
            AE+ FK+ ++S+P + E     +  +                   D  AA     + + 
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171

Query: 502 AEPNSSSYASKYASFLWNTG 521
                +      A      G
Sbjct: 172 VCVWDAELRELRAECFIKEG 191

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 12/91 (13%)

Query: 433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR------ 486
           + +N       +   +    D++ +    +  ++ D       + Y     L +      
Sbjct: 207 KNDNTEAFYKISTLYYQ-LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265

Query: 487 -----KDLWAAEETYQQAMAAEPNSSSYASK 512
                     A   Y+  M  EP+ + Y  +
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 8/82 (9%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
               +     +  L    A+   +   +  +A    K A +    + EA  + +   + +
Sbjct: 166 LDKILEVCVWDAELRELRAE-CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224

Query: 486 RKDLWAAEETYQQAMAAEPNSS 507
             D   +    ++ +  + +  
Sbjct: 225 -GDHELSLSEVRECLKLDQDHK 245

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 425 LYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD 480
            Y+  +  EP+                    +    A       +Q +P +  AL   A+
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICH-CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337

Query: 481 FLWLVRKDLWAAEETYQQAMAAEPNSS 507
             +L+ +    A + Y+ A     N  
Sbjct: 338 -AYLIEEMYDEAIQDYETAQEHNENDQ 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 409 VKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD 468
            +LE      +        +G        L   +      L  + ++ A +   +A + D
Sbjct: 405 KRLEEVQEKIH------VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458

Query: 469 PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
           P   +A    A    L  + +  A E ++ +      
Sbjct: 459 PRSEQAKIGLAQLK-LQMEKIDEAIELFEDSAILART 494

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 418 DYFRTDLLYQMGVAEEPNNPLLLLNYA-QFLHLVTKDYDRAEECFKRAIQSDPPDAEALS 476
           +Y     L    +    +        A   L   T  Y                 A AL 
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247

Query: 477 QYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
               F +L + +L  A+   Q+++   P  +SY
Sbjct: 248 YTGIFHFL-KNNLLDAQVLLQESINLHPTPNSY 279

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 15/140 (10%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           V L P+    Y+ R  + + +   +             P N    +  A  L+     + 
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFT 361

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
            +E  F       P   E  + +A+ L   R D   A + Y  A   E            
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEIL-TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420

Query: 516 FLWNTGGEETCFPLSSSQDD 535
            +              +Q D
Sbjct: 421 LIGKATILARQSSQDPTQLD 440

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 453 DYDRAEECFKRAIQ---SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY 509
              +A   +++AI         AE         +    +   AE      +   PN  + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGS-TFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 510 ASKYASFLWNTG 521
              YA  L+N G
Sbjct: 64  RVFYAMVLYNLG 75

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW-LVRKDLW 490
           +  +     L           +Y +AE      ++  P        YA  L+ L R +  
Sbjct: 22  QGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE-- 78

Query: 491 AAEETYQQAMAAEPNSSSYAS 511
              E   + +A   +  +  S
Sbjct: 79  QGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE------ALSQY 478
           +   GV + PN+  L + YA  L+     Y++  E   + I     D        A+  Y
Sbjct: 49  VLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107

Query: 479 ADFL 482
           AD L
Sbjct: 108 ADKL 111

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQ-FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
            Y   +  +P+N +L  N +  +      DY +A E   + +   P   +  S+ A  L 
Sbjct: 26  CYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83

Query: 484 LVRKDLWAAEETYQQAMAAEPNSSSYASKYA 514
            +      A+ TY++ +  E N+        
Sbjct: 84  FL-NRFEEAKRTYEEGLKHEANNPQLKEGLQ 113

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 12/120 (10%), Positives = 28/120 (23%), Gaps = 18/120 (15%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
             L P   +     +     +   +             P   + + +       + +   
Sbjct: 269 HGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-ETVQ 327

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
           R      +A    P    A++ +      + + +        QA    P         AS
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQAL-ETVQRLLPVLCQAHGLTPE---QVVAIAS 383

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 21/129 (16%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
             L P+  +           +   +             P   + + ++      + +   
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL-ETVQ 429

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
           R      +A    P    A++        + + + A       A+AA  N    A     
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPAL-ESIVAQLSRPDPALAALTNDHLVA----- 483

Query: 516 FLWNTGGEE 524
            L   GG  
Sbjct: 484 -LACLGGRP 491

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 12/120 (10%), Positives = 26/120 (21%), Gaps = 18/120 (15%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
             L P   +           +   +             P   + + +       + +   
Sbjct: 201 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL-ETVQ 259

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
           R      +A    P    A++  +       + +        QA    P         AS
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNS-GGKQALETVQRLLPVLCQAHGLTPQ---QVVAIAS 315

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
             L P   +           +   +             P   + + ++        +   
Sbjct: 99  HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ-ALETVQ 157

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
                  +A    P    A++          + +        QA    P 
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGK-QALETVQRLLPVLCQAHGLTPQ 206

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 5/91 (5%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           L    +   P   + + ++      + +   R      +A    P    A++ +      
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQAL-ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 118

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
           + + +        QA    P         AS
Sbjct: 119 L-ETVQRLLPVLCQAHGLTPE---QVVAIAS 145

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           V        D+     +L + G                     +      + +    ++ 
Sbjct: 67  VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFP 125

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS 507
            A +  ++ I+    D +   +     +   K+   A+ ++ + +  +PN  
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIY 176

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 14/106 (13%)

Query: 409 VKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD 468
           ++LE      Y        +        PL+        +   +++  A    ++A + D
Sbjct: 399 IELENKLDGIY------VGIA-------PLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 469 PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYA 514
           P   +A    A    L ++D+  A   ++++               
Sbjct: 446 PRSEQAKIGLAQMK-LQQEDIDEAITLFEESADLARTMEEKLQAIT 490

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 15/134 (11%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           +KL+ ++   Y+ R  + + +   ++            P N    +  A   +     +D
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFD 355

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS 515
             E  F  A +  P   E  + +A+ L   + D   A + Y  A+  E          A 
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEIL-TDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414

Query: 516 FLWNTGGEETCFPL 529
            +           +
Sbjct: 415 LVGKATLLTRNPTV 428

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
                  +    + L +   F  L   D   A E  K+AI+   P   +    A  +   
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFL-KNDPLGAHEDIKKAIELF-PRVNSYIYMAL-IMAD 282

Query: 486 RKDLWAAEETYQQAMAAEPNSS 507
           R D       + +A+  + N+S
Sbjct: 283 RNDSTEYYNYFDKALKLDSNNS 304

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 410 KLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP 469
           KLE  D +   R   +Y          P +  N A +      D     +  K   Q  P
Sbjct: 316 KLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP 375

Query: 470 PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
             A      ++   L    +   E T    +     
Sbjct: 376 NSAVLAFSLSEQYEL-NTKIPEIETTILSCIDRIHL 410

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW- 483
            Y      +P N   + N A  ++    DY++  E  ++AI+    + E   Q A     
Sbjct: 26  HYDKAKELDPTNMTYITNQAA-VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84

Query: 484 -----LVRKDLWAAEETYQQAMAAEPNSSSY 509
                   +    A   Y +++A        
Sbjct: 85  IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE 493
           P N +   N A   +    +Y  A +  +RAI  DP  ++A  +    L         A 
Sbjct: 43  PANAVYFCNRAA-AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL-SSLNKHVEAV 100

Query: 494 ETYQQAMAAEPNSSSYASKYA 514
             Y++A+  +P++ +Y S   
Sbjct: 101 AYYKKALELDPDNETYKSNLK 121

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 2/103 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           + Q    E  +   + L  A    L TK ++ A+E     I  +  D    S  A     
Sbjct: 28  VIQTLSDELQSRGDVKLAKAD-CLLETKQFELAQELLA-TIPLEYQDNSYKSLIAKLELH 85

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF 527
            +       +  +Q +AA P++   A + A      G +E   
Sbjct: 86  QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           LY   ++  P NP+ L N A   +  +  +++A E  + A   DP  ++A S+       
Sbjct: 33  LYTQALSIAPANPIYLSNRAA-AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR-F 90

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASK 512
              D   A+E Y++ + AE N  S A K
Sbjct: 91  DMADYKGAKEAYEKGIEAEGNGGSDAMK 118

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
             L PD  +           +   +             P+  + + ++      +     
Sbjct: 253 HGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET-VQ 311

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
           R      +A    P    A++ +        + +        QA    P+
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGK-QALETVQRLLPVLCQAHGLTPD 360

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 24/128 (18%)

Query: 404 VTPVTVKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLV 450
           +T   + L P   +           +   +             P   + + ++       
Sbjct: 180 LTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ-A 238

Query: 451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE---TYQQAMAAEPNSS 507
            +   R      +A    P    A++         ++ L   +       QA    P+  
Sbjct: 239 LETMQRLLPVLCQAHGLPPDQVVAIAS----NIGGKQALETVQRLLPVLCQAHGLTPD-- 292

Query: 508 SYASKYAS 515
                 AS
Sbjct: 293 -QVVAIAS 299

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW---AAEETY 496
           L   A+         ++A    K A + +P  A    Q      LV   L     AE + 
Sbjct: 86  LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ----RGLVYALLGERDKAEASL 141

Query: 497 QQAMAAEPNSSSY 509
           +QA+A E      
Sbjct: 142 KQALALEDTPEIR 154

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA----------L 475
           ++  + E P +P  L   A+         + A E  K  +   P               L
Sbjct: 28  FERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86

Query: 476 SQYADFLWLVRKDLWAAEETYQQAMAAEPN 505
            + A+     +  L  A    + A    P 
Sbjct: 87  YRQAEDRERGKGYLEQALSVLKDAERVNPR 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 2/82 (2%)

Query: 424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
           L ++    +EP       +         +    A      A   DP D    +  A    
Sbjct: 38  LAFEAVCQKEPEREEAWRSLG-LTQAENEKDGLAIIALNHARMLDPKDIAVHAALA-VSH 95

Query: 484 LVRKDLWAAEETYQQAMAAEPN 505
               +  AA  + +  + ++P 
Sbjct: 96  TNEHNANAALASLRAWLLSQPQ 117

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 17/140 (12%)

Query: 370 KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMG 429
           +       S +D   ++Q E E           +++         DY D   T   Y  G
Sbjct: 4   ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLS---------DYDDL--TSATYDKG 52

Query: 430 VAEEPNNPLL----LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
              E  NPL                  D   A   F+ A+Q DP   EA           
Sbjct: 53  YQFEEENPLRDHPQPFEEGLRRLQ-EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111

Query: 486 RKDLWAAEETYQQAMAAEPN 505
            ++L  A    ++ +  +P+
Sbjct: 112 EQEL-LAISALRRCLELKPD 130

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW------LVRK 487
           P+N     N A  ++   K +    +  ++A++            A  +         + 
Sbjct: 39  PSNITFYNNKAA-VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97

Query: 488 DLWAAEETYQQAMAAEPN 505
           DL  A + + ++++   +
Sbjct: 98  DLSLAVQWFHRSLSEFRD 115

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 17/119 (14%)

Query: 409 VKLEPDDYMDYF-RTDLLYQMGVAEE------------PNNPLLLLNYAQFLHLVTKDYD 455
           + + PD    +      L Q G  +             P      LN    L+       
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRDK 128

Query: 456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-SSYASKY 513
            A++      Q DP D          L   + D   A+E  +Q           +    
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLY--LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVE 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.52
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.51
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.47
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.42
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.39
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.38
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.38
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.36
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.36
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.33
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.32
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.32
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.26
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.26
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.25
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.23
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.2
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.09
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.01
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.96
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.95
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.95
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.91
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.88
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.88
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.87
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.87
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.86
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.7
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.67
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.61
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.6
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.58
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.52
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.51
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.48
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.4
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.37
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.29
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.13
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.12
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.9
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.85
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.8
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.75
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.61
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.34
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.28
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.95
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.74
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.49
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.47
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.86
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.74
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.58
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.37
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.33
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.95
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.71
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.33
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	80.15

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=3e-17  Score=140.92  Aligned_cols=120  Identities=19%  Similarity=0.207  Sum_probs=109.8

Q ss_pred             ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      ..+||+....+...+....   ..|+|++|+.+|++||+++|+++.++.++|.++. ..|++++|+..|++||+++|+++
T Consensus         6 a~inP~~a~~~~~~G~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYF---KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhh
Confidence            4789999998887766643   4599999999999999999999999999999988 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L  517 (540)
                      .+|.++|.++.. .|++++|+++|++|++++|++++++.+++.++
T Consensus        82 ~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           82 KGYIRKAACLVA-MREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999998764 79999999999999999999999999998875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=2.4e-16  Score=138.17  Aligned_cols=123  Identities=12%  Similarity=0.110  Sum_probs=86.2

Q ss_pred             CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204          395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA  474 (540)
Q Consensus       395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA  474 (540)
                      .+|+....+...+...   ...|++++|+.+|+++|+++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++++
T Consensus        26 ~~p~~~~~~~~la~~y---~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~  101 (150)
T 4ga2_A           26 SPRQKSIKGFYFAKLY---YEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDL  101 (150)
T ss_dssp             SHHHHHTTHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cCcccHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHH
Confidence            3455444443333332   23477888888888888888888888888887777 4888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          475 LSQYADFLWLVRKDLWAAEE-TYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       475 l~NLA~~L~~~rGD~EEAee-~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      +.++|.++.. .|++++|.+ ++++|++++|+++.++..++.++...|+
T Consensus       102 ~~~la~~~~~-~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          102 VLKIAELLCK-NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHH-HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHH-cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            8888876654 466655544 4577888888888887777777777665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=2.6e-15  Score=138.20  Aligned_cols=143  Identities=14%  Similarity=-0.035  Sum_probs=115.1

Q ss_pred             HHHHHHhhchhhhhh----ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--
Q 009204          378 SVLDEALRIQEESEY----RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--  451 (540)
Q Consensus       378 ~~L~eap~~q~~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--  451 (540)
                      .++.+..+..++...    ..++|+....+...+.+.   ...|++++|+.+|+++++++|+++.++.++|.++.. .  
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~---~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~   88 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQ---LKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYR   88 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhh
Confidence            344444445544333    245666666665554443   245899999999999999999999999999998884 8  


Q ss_pred             ---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          452 ---------KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       452 ---------GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                               |++++|+.+|++|++++|+++.++.++|.++. ..|++++|+++|++|++++ +++.++.++|.++..+|+
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~  166 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR  166 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence                     99999999999999999999999999998775 4789999999999999999 999999999999999999


Q ss_pred             Cccc
Q 009204          523 EETC  526 (540)
Q Consensus       523 ~Et~  526 (540)
                      +++|
T Consensus       167 ~~~A  170 (217)
T 2pl2_A          167 LDEA  170 (217)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=3e-15  Score=165.83  Aligned_cols=144  Identities=19%  Similarity=0.150  Sum_probs=119.7

Q ss_pred             HHHHHHHhhchhhhhh--c--cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Q 009204          377 NSVLDEALRIQEESEY--R--ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK  452 (540)
Q Consensus       377 ~~~L~eap~~q~~~~~--e--aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G  452 (540)
                      ..++.+..+..++..+  .  .++|+....+.+.+.+.   ...|++++|+.+|++||+++|+++.+|+++|.++.. +|
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l---~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g   91 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL---QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQ   91 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence            3444444444444333  1  33555555555554443   245999999999999999999999999999999984 99


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       453 D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++++|+++|++||+++|++++++.++|.++. ..|++++|+++|++|++++|+++.++.++|.+|..+|++++
T Consensus        92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           92 DVQGALQCYTRAIQINPAFADAHSNLASIHK-DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999999999999999876 47999999999999999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.62  E-value=6.5e-15  Score=129.05  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=103.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+..|++++..+|+++..++++|.+++. .|++++|+++|++||+++|+++.+|.++|.++. ..|++++|+.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHH
Confidence            34889999999999999999999999999999994 999999999999999999999999999999876 5799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|++|++++|+++.++.++|.++..+|++++
T Consensus        87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            9999999999999999999999999999864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=2.2e-15  Score=166.87  Aligned_cols=123  Identities=20%  Similarity=0.193  Sum_probs=110.2

Q ss_pred             HHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          398 ETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ  477 (540)
Q Consensus       398 e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N  477 (540)
                      +-...+.+.+.+.   .+.|++++|+.+|++||+++|+++.+++|+|.+|. .+|++++|+++|++||+++|+++++|.+
T Consensus         7 ~~a~al~nLG~~~---~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            7 THADSLNNLANIK---REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3344444444443   24599999999999999999999999999999999 4999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          478 YADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       478 LA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|.++. ..|++++|+++|++|++++|+++.++.++|.+|..+|++++
T Consensus        83 Lg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           83 MGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999876 47999999999999999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=7.7e-15  Score=135.05  Aligned_cols=109  Identities=20%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |++++|+..|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++ +++.++.++|.++.. .|++++|+.+|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            89999999999999999999999999999988 4999999999999999999 999999999998764 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEETCFP  528 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~~p  528 (540)
                      +++++++|+++.++.++|.++..+|+++++..
T Consensus       175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999999999987643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=1.3e-15  Score=137.04  Aligned_cols=110  Identities=8%  Similarity=0.097  Sum_probs=98.8

Q ss_pred             ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          393 RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       393 eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      ..++|+....+...+.+.   ...|++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+++|++|++++|+++
T Consensus        29 l~l~p~~~~~~~~lg~~~---~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           29 NAIPDDMMDDIYSYAYDF---YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             hCCCHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCc
Confidence            467999888887765553   35699999999999999999999999999999988 49999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      .++.++|.++. ..|++++|+.+|++|++++|+.+
T Consensus       105 ~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          105 TPVFHTGQCQL-RLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999876 47999999999999999999876

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=4.8e-14  Score=113.11  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .+++++|..+|++++..+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+.+
T Consensus        25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~  102 (131)
T 2vyi_A           25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAY  102 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |+++++++|+++.++..++.++..+|+++
T Consensus       103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          103 YKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=7.7e-15  Score=134.21  Aligned_cols=106  Identities=14%  Similarity=0.167  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLN----------------YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allN----------------LA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .|++++|+.+|+++++.+|+++.+++.                +|.++. ..|++++|+.+|++||+++|+++.++.++|
T Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            489999999999999999999999999                999988 599999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      .++.. .|++++|+++|+++++++|+++.++.++|.+++..|+.
T Consensus        96 ~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           96 EMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            98765 79999999999999999999999999999999877653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=5.3e-14  Score=116.79  Aligned_cols=103  Identities=18%  Similarity=0.101  Sum_probs=96.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~   93 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALE   93 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHH
Confidence            3489999999999999999999999999999988 59999999999999999999999999999998764 799999999


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHH
Q 009204          495 TYQQAMAAE------PNSSSYASKYASFLWN  519 (540)
Q Consensus       495 ~feKALeLD------Pdnpeal~NLA~~L~~  519 (540)
                      +|+++++++      |+++.++..++.+...
T Consensus        94 ~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           94 TLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999      9999999998887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.56  E-value=4.1e-14  Score=127.15  Aligned_cols=104  Identities=13%  Similarity=0.007  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204          420 FRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA  499 (540)
Q Consensus       420 eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA  499 (540)
                      ..+...|+++++++|+++.+++++|..++. .|++++|+.+|++|++++|+++.+|.++|.++. ..|++++|+++|++|
T Consensus        19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHH
Confidence            334457889999999999999999999994 999999999999999999999999999999876 479999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          500 MAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       500 LeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++++|+++.+++++|.+|..+|++++
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~e  122 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLK  122 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.56  E-value=3.9e-14  Score=115.08  Aligned_cols=105  Identities=20%  Similarity=0.205  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .+++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus        29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~  106 (133)
T 2lni_A           29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDV  106 (133)
T ss_dssp             TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHH
Confidence            388999999999999999999999999999888 5999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      |+++++++|++..++..++.++..+|+
T Consensus       107 ~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          107 YQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999988774

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.56  E-value=5.2e-15  Score=130.00  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .++|+....+...+...   ...|++++|+.+|+++++.+|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.
T Consensus        15 ~~~p~~~~~~~~~g~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           15 EISSDTLEQLYSLAFNQ---YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             TCCHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             cCCHhhHHHHHHHHHHH---HHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCch
Confidence            56787777776654443   24599999999999999999999999999999888 499999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~  511 (540)
                      ++.++|.++. ..|++++|+++|++|++++|+++....
T Consensus        91 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           91 FPFHAAECLL-QXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            9999998876 479999999999999999998876543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.55  E-value=5.1e-14  Score=122.63  Aligned_cols=101  Identities=26%  Similarity=0.233  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+++
T Consensus        24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~  101 (164)
T 3sz7_A           24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYKGAKEA  101 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998764 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~  518 (540)
                      |+++++++|+++.++.+.+....
T Consensus       102 ~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A          102 YEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999987666665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=2e-13  Score=119.31  Aligned_cols=109  Identities=12%  Similarity=-0.025  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|...+++++..+|+++.++.++|.++. ..+++++|.+++++|++++|++..++..+|.++. ..|++++|++
T Consensus        51 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~  128 (184)
T 3vtx_A           51 DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIE  128 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHH
Confidence            3489999999999999999999999999999888 4999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++++|+++.++.++|.++..+|++++
T Consensus       129 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A          129 AYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=2.9e-14  Score=145.99  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=117.9

Q ss_pred             CChHHHHHHH---HHHHHHhhchhhhhh----ccCCHHHHHhcccccccccCCCCCCC-HHHHHHHHHHHHHcCCCCHHH
Q 009204          368 MNKEELDLWN---SVLDEALRIQEESEY----RILDHETMQHFVTPVTVKLEPDDYMD-YFRTDLLYQMGVAEEPNNPLL  439 (540)
Q Consensus       368 ~~~ee~~LW~---~~L~eap~~q~~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd-~eeAe~lYqkALalDP~Np~a  439 (540)
                      .+.+-..+|.   .++....+..++...    ..++|+....+...+.+..   ..|+ +++|+.+|++||+++|+++.+
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3444444444   333333334444433    1446666666655544432   3475 999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      |+++|.++. ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+|++|++++|+++.+|.++|.+|..
T Consensus       169 ~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          169 WHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999888 49999999999999999999999999999987764 6889999999999999999999999999999999


Q ss_pred             -cCCCccc
Q 009204          520 -TGGEETC  526 (540)
Q Consensus       520 -~GR~Et~  526 (540)
                       .|+.+++
T Consensus       247 l~~~~~eA  254 (382)
T 2h6f_A          247 TTGYNDRA  254 (382)
T ss_dssp             TTCSCSHH
T ss_pred             hcCcchHH
Confidence             4443554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=2.9e-14  Score=122.32  Aligned_cols=96  Identities=16%  Similarity=0.042  Sum_probs=88.4

Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          428 MGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       428 kALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      ++..+||+.+.++.+.|..++ ..|++++|+++|++||+++|+++.++.++|.++.. .|++++|+..|++|++++|+++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence            345589999999999999999 49999999999999999999999999999998764 7999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcc
Q 009204          508 SYASKYASFLWNTGGEET  525 (540)
Q Consensus       508 eal~NLA~~L~~~GR~Et  525 (540)
                      .++.++|.++..+|++++
T Consensus        82 ~a~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHCCCHHH
Confidence            999999999999999874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=1.9e-13  Score=119.44  Aligned_cols=108  Identities=19%  Similarity=0.115  Sum_probs=103.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+.+|++||+++|+++.++.++|.++. ..|++++|+..+++++..+|+++.++..+|..+. ..+++++|.+.
T Consensus        18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~   95 (184)
T 3vtx_A           18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDA   95 (184)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHH
Confidence            499999999999999999999999999999988 4999999999999999999999999999998765 47899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++++.++|+++.++..+|.++..+|++++
T Consensus        96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~  125 (184)
T 3vtx_A           96 LQRAIALNTVYADAYYKLGLVYDSMGEHDK  125 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHhCCchh
Confidence            999999999999999999999999999875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.52  E-value=4.5e-13  Score=106.61  Aligned_cols=104  Identities=27%  Similarity=0.347  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+
T Consensus        22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~   99 (125)
T 1na0_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY   99 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998764 7899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      |+++++.+|+++.++.+++.++..+|
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          100 YQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999988765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=3.6e-14  Score=124.06  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=97.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCH--HHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDL--WAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~--EEA  492 (540)
                      ..|++++|...|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++.++|.+++...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4588999999999999999999999999999988 4999999999999999999999999999998844457888  999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.+|+++++++|+++.++.++|.++...|++++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  133 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQ  133 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH
Confidence            999999999999999999999999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.52  E-value=9.1e-14  Score=122.03  Aligned_cols=102  Identities=13%  Similarity=0.001  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204          422 TDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       422 Ae~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe  501 (540)
                      +...|+++++++|++..+++++|..++. .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++|++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh
Confidence            3457999999999999999999999994 999999999999999999999999999999876 57999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          502 AEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       502 LDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|+++.+++++|.++..+|++++
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~  107 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAE  107 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.52  E-value=1.6e-13  Score=124.21  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=102.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEP-NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP-~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ..|++++|..+|+++++.+| .+..+++++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~   96 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYI   96 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHH
Confidence            34899999999999999999 99999999999988 59999999999999999999999999999998764 79999999


Q ss_pred             HHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCCcc
Q 009204          494 ETYQQAMAAEPNSS-------SYASKYASFLWNTGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnp-------eal~NLA~~L~~~GR~Et  525 (540)
                      .+|+++++++|+++       .++.++|.++..+|++++
T Consensus        97 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  135 (228)
T 4i17_A           97 ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK  135 (228)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence            99999999999999       669999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.51  E-value=3.6e-14  Score=117.95  Aligned_cols=108  Identities=13%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAE---EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal---DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++++|+.+|++|++.   +|+++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            47899999999999999   6999999999999998 49999999999999999999999999999998765 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++|+++++.+|+++.+......+....+..++
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987766666666666654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=8.9e-14  Score=119.28  Aligned_cols=118  Identities=13%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .++|+....+...+...   ...|++++|+.+|++++..+|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.
T Consensus        12 ~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQ---YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             TCCHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             cCCHHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcH
Confidence            34555555544433222   24589999999999999999999999999999988 499999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~  516 (540)
                      ++.++|.++. ..|++++|+++|+++++++|+++........+
T Consensus        88 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           88 FPFHAAECHL-QLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            9999999876 47999999999999999999888765544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=2.4e-14  Score=122.81  Aligned_cols=100  Identities=13%  Similarity=-0.009  Sum_probs=91.6

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204          424 LLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAE  503 (540)
Q Consensus       424 ~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLD  503 (540)
                      ..|+++++.+|++...++++|..++. .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQ-AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcC
Confidence            57889999999999999999999984 999999999999999999999999999999876 5799999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCcc
Q 009204          504 PNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       504 Pdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+++.+++++|.++..+|++++
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=2e-13  Score=115.29  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus        26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~  103 (166)
T 1a17_A           26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRD  103 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999776 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH--HHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASF--LWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~--L~~~GR~Et  525 (540)
                      |+++++++|+++.++..++.+  +...|++++
T Consensus       104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~  135 (166)
T 1a17_A          104 YETVVKVKPHDKDAKMKYQECNKIVKQKAFER  135 (166)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988555555  777777664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.51  E-value=5e-13  Score=105.65  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|++++..+|+++.++.++|.++. ..|++++|..+|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus        17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~   94 (118)
T 1elw_A           17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRT   94 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L  517 (540)
                      |+++++++|+++.++..++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           95 YEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999988765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.50  E-value=4.9e-13  Score=106.75  Aligned_cols=109  Identities=24%  Similarity=0.312  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+
T Consensus        14 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~   91 (136)
T 2fo7_A           14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEY   91 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHH
Confidence            3889999999999999999999999999998884 999999999999999999999999999998765 57999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +++++..+|+++.++..+|.++...|+++++
T Consensus        92 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            9999999999999999999999999998754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=1.5e-13  Score=140.82  Aligned_cols=104  Identities=11%  Similarity=-0.025  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH----
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA----  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA----  492 (540)
                      |++++|+.+|++||+++|+|..+|+++|.++. ..|++++|+.+|++||+++|+++.+|+++|.++....|.+++|    
T Consensus       180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~  258 (382)
T 2h6f_A          180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER  258 (382)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            56666666666666666666666666666666 3666666666666666666666666666666554434443555    


Q ss_pred             -HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          493 -EETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       493 -ee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                       +++|++|++++|+++.+|.+++.+|...|
T Consensus       259 el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          259 EVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence             46666666666666666666666665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=8.1e-13  Score=111.74  Aligned_cols=110  Identities=15%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..+|.++. ..|++++|++
T Consensus        54 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~  131 (186)
T 3as5_A           54 KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAID  131 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHH
Confidence            3589999999999999999999999999999988 4999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++.+|+++.++..+|.++...|++++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A          132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999998753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=1.6e-13  Score=116.69  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|...|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+
T Consensus        30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~  107 (121)
T 1hxi_A           30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALAS  107 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998764 7899999999


Q ss_pred             HHHHHHhCCCCHH
Q 009204          496 YQQAMAAEPNSSS  508 (540)
Q Consensus       496 feKALeLDPdnpe  508 (540)
                      |+++++++|+++.
T Consensus       108 ~~~al~~~P~~~~  120 (121)
T 1hxi_A          108 LRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHC-------
T ss_pred             HHHHHHhCcCCCC
Confidence            9999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=1.8e-13  Score=118.86  Aligned_cols=106  Identities=19%  Similarity=0.139  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAE------------------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ  477 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal------------------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N  477 (540)
                      .|+|++|..+|++||..                  +|.+..++.|+|.++. ..|++++|+.++++||+++|+++.++.+
T Consensus        24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~  102 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFR  102 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHH
Confidence            48999999999999999                  7788899999999988 5999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCC
Q 009204          478 YADFLWLVRKDLWAAEETYQQAMAAEPNSS-SYASKYASFLWNTGGE  523 (540)
Q Consensus       478 LA~~L~~~rGD~EEAee~feKALeLDPdnp-eal~NLA~~L~~~GR~  523 (540)
                      +|.++.. .|++++|+.+|++|++++|+++ .+...++.+....++.
T Consensus       103 ~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A          103 RAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9998764 7999999999999999999999 6677777776655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.7e-13  Score=109.65  Aligned_cols=102  Identities=23%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++++|..+|+++++.+|++   ..++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|
T Consensus        41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A  118 (148)
T 2dba_A           41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LGRLDQA  118 (148)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cCCHHHH
Confidence            489999999999999999998   899999999988 49999999999999999999999999999998765 7899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +.+|+++++++|+++.++..++.+...
T Consensus       119 ~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          119 VLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999988887543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.47  E-value=2.9e-13  Score=134.13  Aligned_cols=108  Identities=18%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---------------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---------------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      .|++++|..+|++|++++|++               ..++.++|.++. ..|++++|+.+|++||+++|+++.++.++|.
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  238 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGE  238 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            489999999999999999999               699999999988 5999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++.. .|++++|+.+|++|++++|+++.++.+++.++..+|++++
T Consensus       239 ~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          239 AHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8764 7999999999999999999999999999999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.47  E-value=4.6e-13  Score=119.96  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP----------------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np----------------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .|++++|..+|++++++.|+++                .++.++|.++. ..|++++|+.+|++|++++|+++.++.++|
T Consensus        51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  129 (198)
T 2fbn_A           51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLG  129 (198)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4899999999999999999998                89999999988 599999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .++.. .|++++|+++|++|++++|+++.++..++.++..+++.++
T Consensus       130 ~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          130 VANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            98764 7899999999999999999999999999999998887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.46  E-value=5.2e-13  Score=128.18  Aligned_cols=109  Identities=18%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ..|++++|..+|+++++.+|+  ++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|
T Consensus       189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A  266 (365)
T 4eqf_A          189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEA  266 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            458999999999999999999  9999999999988 49999999999999999999999999999998764 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++|+++++++|+++.++.++|.++..+|++++
T Consensus       267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.46  E-value=2.7e-13  Score=126.08  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDY----------DRAEECFKRAIQSDPPDAEALSQYADFLWL  484 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~----------deAEe~feRALeLDPndAeAl~NLA~~L~~  484 (540)
                      +.+.|++|...|++|++++|+++++|.++|.++.. .+++          ++|+..|++||+++|+++++|+++|.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34779999999999999999999999999998874 7664          699999999999999999999999998875


Q ss_pred             Hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          485 VR----------KDLWAAEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       485 ~r----------GD~EEAee~feKALeLDPdnpeal~NLA~~  516 (540)
                      ..          |++++|+++|++|++++|++..++.++..+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            42          589999999999999999999887766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=3.5e-13  Score=121.98  Aligned_cols=107  Identities=12%  Similarity=0.163  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHcC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-------EALSQYADFLWLVRK  487 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-------eAl~NLA~~L~~~rG  487 (540)
                      ..|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++       .++.++|.++. ..|
T Consensus        54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~-~~~  131 (228)
T 4i17_A           54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ-QAG  131 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH-Hhc
Confidence            3489999999999999999999999999999998 49999999999999999999999       66999998776 479


Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCC
Q 009204          488 DLWAAEETYQQAMAAEPN--SSSYASKYASFLWNTGGE  523 (540)
Q Consensus       488 D~EEAee~feKALeLDPd--npeal~NLA~~L~~~GR~  523 (540)
                      ++++|+++|++|++++|+  ++.++.++|.++...|+.
T Consensus       132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999  999999999999999886

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=1.3e-12  Score=111.74  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHcC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-------EALSQYADFLWLVRK  487 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-------eAl~NLA~~L~~~rG  487 (540)
                      ..|+|++|+.+|++||+++|+++.++.|+|.++. .+|++++|+++|++||+++|++.       .++.++|.++. ..|
T Consensus        20 ~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~   97 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQN   97 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcC
Confidence            4589999999999999999999999999999998 49999999999999999998874       57888888765 579


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA  514 (540)
                      ++++|+++|++|+..+|+ ++....+.
T Consensus        98 ~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           98 DLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             CHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            999999999999999986 55554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.43  E-value=1.4e-12  Score=108.03  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~   99 (137)
T 3q49_B           22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIAN   99 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998764 7999999999


Q ss_pred             HHHHHHhCCC-----CHHHHHHHHHHHHH
Q 009204          496 YQQAMAAEPN-----SSSYASKYASFLWN  519 (540)
Q Consensus       496 feKALeLDPd-----npeal~NLA~~L~~  519 (540)
                      |+++++++|+     +..+...+..+...
T Consensus       100 ~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B          100 LQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998     77777777665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=1.1e-12  Score=110.97  Aligned_cols=109  Identities=14%  Similarity=0.060  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+++
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~   98 (186)
T 3as5_A           21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAVPL   98 (186)
T ss_dssp             HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHH
Confidence            389999999999999999999999999999988 49999999999999999999999999999998764 7899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++.+|+++.++..+|.++...|++++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           99 LIKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999999999999999999998753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=2.5e-12  Score=114.74  Aligned_cols=110  Identities=15%  Similarity=0.061  Sum_probs=101.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3489999999999999999999999999999888 49999999999999999999999999999988764 789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++.+|+++.++..+|.++...|++++|
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999999999999998753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=1.8e-12  Score=125.77  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|...|++++..+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|++
T Consensus       215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  292 (388)
T 1w3b_A          215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAED  292 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            4588899999999999999999999999999888 49999999999999999999999999999987654 788999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++++|+++.++.++|.++...|+++++
T Consensus       293 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          293 CYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.42  E-value=1.1e-12  Score=136.96  Aligned_cols=114  Identities=18%  Similarity=0.127  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ...|++++|+.+|++|++++|+++.++.++|.++. .+|++++|+++|++|++++|+++.++.++|.++.. .|++++|+
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            35699999999999999999999999999999988 49999999999999999999999999999998765 78999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHH--HHHcCCCcccccC
Q 009204          494 ETYQQAMAAEPNSSSYASKYASF--LWNTGGEETCFPL  529 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~--L~~~GR~Et~~pl  529 (540)
                      ++|++|++++|+++.++.+++.+  +..+|++++|-..
T Consensus        95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~  132 (477)
T 1wao_1           95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  132 (477)
T ss_dssp             HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999998  8888888765443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.42  E-value=3.1e-12  Score=114.16  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..+|.++. ..|++++|+.+
T Consensus        70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~  147 (243)
T 2q7f_A           70 VNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPY  147 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999776 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++.+|+++.++..+|.++...|++++|
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          148 LQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999998753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=2.1e-12  Score=125.29  Aligned_cols=110  Identities=21%  Similarity=0.243  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|++
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~  326 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCCHHHHHH
Confidence            3589999999999999999999999999999988 4999999999999999999999999999998765 5799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++++|+++.++.++|.++...|+++++
T Consensus       327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  358 (388)
T 1w3b_A          327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=5.3e-12  Score=103.51  Aligned_cols=105  Identities=18%  Similarity=0.112  Sum_probs=93.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~  489 (540)
                      .|++++|...|+++++.+|+++   .+++++|.++. ..|++++|+.+|+++++.+|++   +.++.++|.++. ..|++
T Consensus        15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~   92 (129)
T 2xev_A           15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKN   92 (129)
T ss_dssp             TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCH
Confidence            4899999999999999999999   79999999988 4999999999999999999999   999999999876 47999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          490 WAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++|+.+|+++++..|+++.+......+-.-.++
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           93 TEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            999999999999999999887777666554444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.7e-12  Score=116.22  Aligned_cols=108  Identities=14%  Similarity=0.038  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      |++++|...|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~  196 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence            44555555555555588999999999999988 4999999999999999999999999999999876 479999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +++++++|+++.++..+|.++..+|++++|
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.41  E-value=2e-12  Score=122.89  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=103.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~  307 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEH  307 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998765 7999999999


Q ss_pred             HHHHHHhCCCC-----------HHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNS-----------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdn-----------peal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++++|++           +.+|.++|.++..+|+++++
T Consensus       308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999999998           89999999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=6.4e-13  Score=120.79  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=72.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+
T Consensus        56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~  133 (275)
T 1xnf_A           56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDD  133 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHH
Confidence            467777777777777777777777777777666 37777777777777777777777777777766543 5677777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+++++++|+++.....++.. ...|++++
T Consensus       134 ~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  162 (275)
T 1xnf_A          134 LLAFYQDDPNDPFRSLWLYLA-EQKLDEKQ  162 (275)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHHHCHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHH-HHhcCHHH
Confidence            777777777776555544433 34455543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=8.9e-13  Score=136.44  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--------KDYDRAEECFKRAIQSDP---PDAEALSQYADFLWLV  485 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--------GD~deAEe~feRALeLDP---ndAeAl~NLA~~L~~~  485 (540)
                      |++++|+.+|++|++++|+++.+++++|.++.. .        |++++|+++|++|++++|   +++.++.++|.++.. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            889999999999999999999999999998884 7        899999999999999999   999999999987764 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      .|++++|+++|++|++++|+++.++.+++.++..+|+++++.
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=5.5e-12  Score=110.56  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT-KDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~-GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. .. |++++|+.+|+++++  .+|++..++.++|.++. ..|++++|
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A  132 (225)
T 2vq2_A           55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-KQGQFGLA  132 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHH
Confidence            377788888888888888888888888887777 47 888888888888887  56666777777777655 36778888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.+|+++++.+|+++.++..+|.++...|++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A          133 EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            888888888888888888888888888887664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=2.1e-12  Score=114.73  Aligned_cols=105  Identities=15%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|++++  +| ++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+++
T Consensus        19 ~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~   93 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKD   93 (213)
T ss_dssp             TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHH
Confidence            489999999999996  45 7899999999988 49999999999999999999999999999998764 7999999999


Q ss_pred             HHHHHHhCCCCH----------------HHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSS----------------SYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnp----------------eal~NLA~~L~~~GR~Et  525 (540)
                      |++++++.|++.                .++.++|.++..+|++++
T Consensus        94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  139 (213)
T 1hh8_A           94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  139 (213)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence            999999998877                999999999999999763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=1.1e-12  Score=136.74  Aligned_cols=128  Identities=12%  Similarity=0.075  Sum_probs=109.4

Q ss_pred             CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204          395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA  474 (540)
Q Consensus       395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA  474 (540)
                      ++|+....+...+.+.   ...|++++|..+|+++++++|+++.++.++|.++. ..|++++|+++|++|++++|+++.+
T Consensus        18 ~~p~~~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~   93 (568)
T 2vsy_A           18 HRPQDFVAWLMLADAE---LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGI   93 (568)
T ss_dssp             ---CCHHHHHHHHHHH---HHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHH
Confidence            3444444444433332   24589999999999999999999999999999988 4999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCcccc
Q 009204          475 LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT---GGEETCF  527 (540)
Q Consensus       475 l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~---GR~Et~~  527 (540)
                      +.++|.++. ..|++++|+++|++|++++|+++.++.++|.++..+   |+++++.
T Consensus        94 ~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A           94 ALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS  148 (568)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence            999999876 479999999999999999999999999999999999   8877643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.39  E-value=3.3e-12  Score=102.72  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHcCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-------AEALSQYADFLWLVRKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-------AeAl~NLA~~L~~~rGD  488 (540)
                      .|++++|..+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|++       +.++.++|.++.. .|+
T Consensus        17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~   94 (131)
T 1elr_A           17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEK   94 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hcc
Confidence            489999999999999999999999999999988 4999999999999999999888       9999999998764 799


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +++|+++|+++++++| ++..+..++.++...++.
T Consensus        95 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           95 YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9999999999999999 688999998887766543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=2e-12  Score=107.26  Aligned_cols=91  Identities=15%  Similarity=0.065  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009204          434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       434 P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NL  513 (540)
                      |.++..+.++|..++ ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.+++++
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456788999999999 49999999999999999999999999999998764 7999999999999999999999999999


Q ss_pred             HHHHHHcCCCccc
Q 009204          514 ASFLWNTGGEETC  526 (540)
Q Consensus       514 A~~L~~~GR~Et~  526 (540)
                      |.++..+|++++|
T Consensus        79 g~~~~~~~~~~~A   91 (126)
T 3upv_A           79 ATAQIAVKEYASA   91 (126)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHHhCHHHH
Confidence            9999999998753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=2.7e-12  Score=133.70  Aligned_cols=132  Identities=13%  Similarity=0.014  Sum_probs=99.8

Q ss_pred             HHHHHHhhchhhhhh----ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Q 009204          378 SVLDEALRIQEESEY----RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD  453 (540)
Q Consensus       378 ~~L~eap~~q~~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD  453 (540)
                      .+..+..+..++..+    ..++|+....+...+.+.   ...|++++|..+|+++++.+|+++.++.++|.++. ..|+
T Consensus        31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~  106 (568)
T 2vsy_A           31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR---WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQ  106 (568)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCC
Confidence            344444444444333    144555555554444333   24588999999999999999999999999999888 4999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009204          454 YDRAEECFKRAIQSDPPDAEALSQYADFLWLVR---KDLWAAEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       454 ~deAEe~feRALeLDPndAeAl~NLA~~L~~~r---GD~EEAee~feKALeLDPdnpeal~NLA  514 (540)
                      +++|+++|++|++++|+++.++.++|.++. ..   |++++|+++|+++++.+|++...+..++
T Consensus       107 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          107 AEAAAAAYTRAHQLLPEEPYITAQLLNWRR-RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            999999999999999999999999998765 46   8899999999999999998877766655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=4.1e-12  Score=121.92  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD---------------------------  468 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD---------------------------  468 (540)
                      .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++                           
T Consensus       112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (365)
T 4eqf_A          112 NENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS  190 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence            377888888888888888888888888877776 3777777766666666554                           


Q ss_pred             -----------------CC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          469 -----------------PP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       469 -----------------Pn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                                       |+  ++.++.++|.++.. .|++++|+++|+++++++|+++.++.++|.++...|++++
T Consensus       191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                             44  78889999987664 6899999999999999999999999999999999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.39  E-value=3e-13  Score=119.66  Aligned_cols=125  Identities=9%  Similarity=-0.046  Sum_probs=84.3

Q ss_pred             CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH
Q 009204          396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEAL  475 (540)
Q Consensus       396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl  475 (540)
                      +|+....+...+.+.+   ..|++++|+.+|+++++.+| ++..+..++.+.....++..+|+.+|+++++++|+++.++
T Consensus        36 ~P~~~~a~~~la~~~~---~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLL---ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             HHTSHHHHHHHHHHHH---HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence            5544444444333322   34777777777777777777 7766655554433223334457778888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCcc
Q 009204          476 SQYADFLWLVRKDLWAAEETYQQAMAAEPNS--SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       476 ~NLA~~L~~~rGD~EEAee~feKALeLDPdn--peal~NLA~~L~~~GR~Et  525 (540)
                      .++|.++. ..|++++|+.+|+++++++|++  +.++.++|.++..+|+.++
T Consensus       112 ~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A          112 CELAVQYN-QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHHHH-HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHH-HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence            88887665 4677888888888888888765  5578888888888887765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.38  E-value=6.2e-13  Score=144.29  Aligned_cols=107  Identities=17%  Similarity=0.016  Sum_probs=100.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+..|+++++.+|+++.+++++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++ +++
T Consensus       446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~  522 (681)
T 2pzi_A          446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTDE-HKF  522 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCCT-TCH
T ss_pred             cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHH-HHH
Confidence            489999999999999999999999999999988 49999999999999999999999999999998764 789999 999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++|++++|+++.+++++|.++..+|++++
T Consensus       523 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          523 YQTVWSTNDGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.38  E-value=2.9e-12  Score=121.72  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .|++++|..+|+++++.+|+  ++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~  271 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            37899999999999999999  8999999999988 49999999999999999999999999999998764 79999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .+|+++++++|+++.++.++|.++..+|++++|
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999998753

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=4.8e-12  Score=110.90  Aligned_cols=109  Identities=22%  Similarity=0.233  Sum_probs=101.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR-KDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~r-GD~EEAee  494 (540)
                      .|++++|..+|+++++.+|+++.++..+|.++. ..|++++|.++|+++++++|+++.++.++|.++. .. |++++|+.
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~   98 (225)
T 2vq2_A           21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMA   98 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999775 57 89999999


Q ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMA--AEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALe--LDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++  .+|.++.++.++|.++...|++++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  132 (225)
T 2vq2_A           99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLA  132 (225)
T ss_dssp             HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence            9999999  7778889999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.38  E-value=3.1e-12  Score=123.28  Aligned_cols=108  Identities=17%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHH----------------------------------H
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEEC----------------------------------F  461 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~----------------------------------f  461 (540)
                      .|++++|+..|+++++.+|+++.+++++|.++.. .|++++|+.+                                  |
T Consensus       130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l  208 (287)
T 3qou_A          130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQL  208 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHH
Confidence            4788888888888888888888888888887774 8887776554                                  5


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCcc
Q 009204          462 KRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS--SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       462 eRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn--peal~NLA~~L~~~GR~Et  525 (540)
                      +++++++|++++++.++|.++. ..|++++|++.|+++++.+|++  +.++.+++.++..+|+.++
T Consensus       209 ~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          209 QQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            5556677777888877877655 4677888888888888888877  7777788888877777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.38  E-value=5.9e-12  Score=116.72  Aligned_cols=108  Identities=13%  Similarity=0.039  Sum_probs=99.3

Q ss_pred             CC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YM-DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~G-d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .| ++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|++..++..+|.++. ..|++++|++
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~  180 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSKLAER  180 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHHHHHH
Confidence            36 8999999999999999999999999999888 4999999999999999999999999999998776 4789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++.+|+++.++.++|.++...|++++
T Consensus       181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  211 (330)
T 3hym_B          181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKT  211 (330)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcccHHH
Confidence            9999999999999999999999999999764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=5.4e-12  Score=114.23  Aligned_cols=108  Identities=22%  Similarity=0.234  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ--SDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe--LDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++  .+|.++.++.++|.++. ..|++++|+
T Consensus        84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~  161 (252)
T 2ho1_A           84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-QMKKPAQAK  161 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-HcCCHHHHH
Confidence            478888888888888888888888888888877 48888888888888888  78888888888888765 468888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|+++++.+|+++.++..+|.++...|++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            88888888888888888888888888888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=1.3e-12  Score=134.96  Aligned_cols=107  Identities=15%  Similarity=0.208  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN---------------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N---------------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      .++|++|..+|++|++++|++               ..+|+|+|.++. ..|++++|+.+|++||+++|+++.+|+++|.
T Consensus       281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  359 (457)
T 1kt0_A          281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGE  359 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            489999999999999999999               799999999988 5999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ++.. .|++++|+.+|++|++++|+++.++.+++.++..+|+++
T Consensus       360 a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          360 AQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            8765 799999999999999999999999999999999888754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.36  E-value=6.1e-12  Score=116.50  Aligned_cols=109  Identities=13%  Similarity=0.067  Sum_probs=102.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~  262 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVSYS-NMSQYDLAAKQ  262 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhccHHHHHHH
Confidence            4899999999999999999999999999999984 999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCC------------CHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPN------------SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPd------------npeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++++|+            ++.++.++|.++..+|+++++
T Consensus       263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999            899999999999999998753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=5.6e-12  Score=116.89  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .|++++|..+|+++++.+|+++.++..+|.++.. .| ++++|+++|+++++++|+++.++..+|.++.. .|++++|+.
T Consensus        69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~  146 (330)
T 3hym_B           69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM-VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-ESEHDQAMA  146 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH-SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCHHHHHH
Confidence            3899999999999999999999999999999884 88 99999999999999999999999999998764 789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++++|++...+..+|.++...|++++
T Consensus       147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B          147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.36  E-value=6.5e-12  Score=116.29  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.
T Consensus       150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~  227 (327)
T 3cv0_A          150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALD  227 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHH
Confidence            4488999999999999999999999999999988 49999999999999999999999999999998764 799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++.+|+++.++.++|.++...|++++|
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.36  E-value=7.5e-12  Score=103.66  Aligned_cols=94  Identities=16%  Similarity=0.108  Sum_probs=86.0

Q ss_pred             HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204          431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       431 alDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal  510 (540)
                      ..+|.++..+.++|..++ ..|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHH
Confidence            457889999999999999 4999999999999999999999999999999876 47999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccc
Q 009204          511 SKYASFLWNTGGEETC  526 (540)
Q Consensus       511 ~NLA~~L~~~GR~Et~  526 (540)
                      .++|.++..+|++++|
T Consensus        81 ~~l~~~~~~~~~~~~A   96 (137)
T 3q49_B           81 FFLGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhHHHH
Confidence            9999999999998753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=4.1e-12  Score=115.01  Aligned_cols=109  Identities=16%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus        50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~  127 (252)
T 2ho1_A           50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQR  127 (252)
T ss_dssp             TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHH
Confidence            378999999999999999999999999999988 4999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMA--AEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALe--LDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |++++.  .+|.++.++.++|.++...|++++|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A          128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999  8999999999999999999998753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.36  E-value=6e-12  Score=103.35  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009204          421 RTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAM  500 (540)
Q Consensus       421 eAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKAL  500 (540)
                      +|...|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+|++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence            5788999999999999999999999988 49999999999999999999999999999998764 799999999999999


Q ss_pred             HhCC--CCHHHHHHHHHHHHHcCCC
Q 009204          501 AAEP--NSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       501 eLDP--dnpeal~NLA~~L~~~GR~  523 (540)
                      +++|  .+......+...+..+++.
T Consensus        81 ~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           81 AAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccHHHHHHHHHHHHHhccc
Confidence            9998  4667777777777776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=3.2e-12  Score=116.72  Aligned_cols=106  Identities=16%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----EALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----eAl~NLA~~L~~~rGD~EE  491 (540)
                      .|++++|...|+++++.+|+++.++.++|.++. ..|++++|+++|+++++ .|+++    .++.++|.++. ..|++++
T Consensus        16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~-~~~~~~~   92 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM-KKGQDSL   92 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH-HcccHHH
Confidence            367777777777777777777777777777666 37777777777777777 34333    33667776654 3567777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |+++|+++++++|+++.++.++|.++...|+++
T Consensus        93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            777777777777777777777777777777765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=1.1e-11  Score=113.19  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL  484 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~  484 (540)
                      ..|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.+++.
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4599999999999999999999999999999998 59999999999999999999999999999987643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=1.5e-12  Score=134.82  Aligned_cols=104  Identities=19%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             cCCHHHHHhcccccccccCC-----CCCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009204          394 ILDHETMQHFVTPVTVKLEP-----DDYMDYFRTDLLYQMGVAEEP---NNPLLLLNYAQFLHLVTKDYDRAEECFKRAI  465 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~-----d~~Gd~eeAe~lYqkALalDP---~Np~allNLA~~L~~~~GD~deAEe~feRAL  465 (540)
                      .++|+....+...+.+.+..     .+.|++++|..+|++|++++|   +++.+++++|.++. ..|++++|+++|++|+
T Consensus       207 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK-YEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            34555555555544443321     112789999999999999999   99999999999998 4999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204          466 QSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA  499 (540)
Q Consensus       466 eLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA  499 (540)
                      +++|+++.++.+++.++.. .|++++|++.+.+.
T Consensus       286 ~l~p~~~~a~~~l~~~~~~-lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 ALDPAWPEPQQREQQLLEF-LSRLTSLLESKGKT  318 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHH-HHHHHHHHHHTTTC
T ss_pred             HhCCCCHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence            9999999999999987754 67899999887665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=4.5e-12  Score=137.56  Aligned_cols=109  Identities=12%  Similarity=-0.065  Sum_probs=102.8

Q ss_pred             CCCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Q 009204          415 DYMDYFRTDLLYQMGV--------AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVR  486 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkAL--------alDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~r  486 (540)
                      ..+++++|+..|++++        +.+|+++.+++++|.++.. .|++++|++.|++|++++|+++.+++++|.++.. .
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~  480 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-T  480 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-c
Confidence            4589999999999999        9999999999999999984 9999999999999999999999999999998764 7


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          487 KDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       487 GD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++++|+++|++|++++|+++.++.++|.++..+|++++
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            999999999999999999999999999999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.35  E-value=4.6e-12  Score=110.20  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      ++.++..+.++|..++ ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++++
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5667889999999999 49999999999999999999999999999998764 799999999999999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 009204          513 YASFLWNTGGEET  525 (540)
Q Consensus       513 LA~~L~~~GR~Et  525 (540)
                      +|.++..+|++++
T Consensus        85 lg~~~~~~g~~~~   97 (164)
T 3sz7_A           85 LGLARFDMADYKG   97 (164)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHHHccCHHH
Confidence            9999999999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=7.8e-12  Score=114.11  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|..++. .+++++|+++
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~  164 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSS  164 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            489999999999999999999999999999998 49999999999999999999999999999933443 5699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      |+++++++|+++.++..+|.++...|+
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            999999999999999999999999998

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=1.2e-11  Score=112.49  Aligned_cols=107  Identities=14%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAE----EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal----DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      .+++++|+..|+++++.    +|.++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~   95 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDA   95 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHH
Confidence            35666666666666665    2345556666666655 36666666666666666666666666666665443 566666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |+++|+++++++|+++.++.++|.++...|+++
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  128 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK  128 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHH
Confidence            666666666666666666666666666666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.34  E-value=3.8e-12  Score=99.96  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHc-CCHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVR-KDLWA  491 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~r-GD~EE  491 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+  +..++.++|.++. .. |++++
T Consensus        18 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~   95 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGKEVE   95 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSCSHH
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCCHHH
Confidence            4578888888888888888888888888888777 488888888888888888888  8888888887654 57 78888


Q ss_pred             HHHHHHHHHHhCCCC
Q 009204          492 AEETYQQAMAAEPNS  506 (540)
Q Consensus       492 Aee~feKALeLDPdn  506 (540)
                      |++++++++..+|++
T Consensus        96 A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           96 AEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhhcccCC
Confidence            888888888888865

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.34  E-value=7.9e-12  Score=98.16  Aligned_cols=92  Identities=17%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 009204          432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN--SSSY  509 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd--npea  509 (540)
                      ++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|+++++++|+  ++.+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHH
Confidence            47999999999999988 59999999999999999999999999999998764 78999999999999999999  9999


Q ss_pred             HHHHHHHHHHc-CCCcc
Q 009204          510 ASKYASFLWNT-GGEET  525 (540)
Q Consensus       510 l~NLA~~L~~~-GR~Et  525 (540)
                      +.++|.++..+ |++++
T Consensus        79 ~~~l~~~~~~~~~~~~~   95 (112)
T 2kck_A           79 WAAKADALRYIEGKEVE   95 (112)
T ss_dssp             HHHHHHHHTTCSSCSHH
T ss_pred             HHHHHHHHHHHhCCHHH
Confidence            99999999999 99874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=2.8e-12  Score=129.99  Aligned_cols=108  Identities=15%  Similarity=0.097  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVA----------------EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALa----------------lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .+++++|+.+|++|++                .+|.++.++.++|.++. ..|++++|+++|++||+++|+++.++.++|
T Consensus       236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  314 (370)
T 1ihg_A          236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRA  314 (370)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            4899999999999999                88999999999999988 599999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .++.. .|++++|+++|++|++++|+++.++..++.++..++++++
T Consensus       315 ~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          315 QGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            98764 7999999999999999999999999999999998887653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=5.5e-12  Score=112.85  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=101.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN-------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQ---------------------  466 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N-------p~allNLA~~L~~~~GD~deAEe~feRALe---------------------  466 (540)
                      ..|++++|..+|+++++.+|++       +.++.++|.++. ..|++++|+++|+++++                     
T Consensus        50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA  128 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence            3489999999999999999987       799999999988 59999999999999999                     


Q ss_pred             -----cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          467 -----SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       467 -----LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                           .+|+++.++.++|.++.. .|++++|+.+|++++..+|+++.++.++|.++...|++++|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  192 (258)
T 3uq3_A          129 EAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA  192 (258)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence                 778888999999998764 79999999999999999999999999999999999998753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=1.8e-11  Score=118.97  Aligned_cols=106  Identities=13%  Similarity=0.022  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYA--QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA--~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      |++++|+..|+++++.+|++.......+  .++. ..|++++|+.+|+++++.+|+++.+++++|.++. ..|++++|++
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~  221 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEG  221 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHH
Confidence            6666666666666666666553332222  2222 2466666666666666666666666666666544 3566666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +|++|++++|++++++.++|.++..+|+.+
T Consensus       222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          222 VLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            666666666666666666666666666653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=7.3e-12  Score=120.48  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL-LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~-allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      .|++++|...|+++++++|+++. +|.++|.++.. .|++++|..+|++|++++|.+..++..++.+.+...|++++|.+
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            36777777777777777777765 77777776663 77777777777777777777776666555443333567777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +|++|++++|+++.+|.+++.++..+|+++
T Consensus       191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            777777777777777777777777777765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.32  E-value=4.3e-12  Score=118.01  Aligned_cols=96  Identities=9%  Similarity=-0.024  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCHHHH-
Q 009204          416 YMDYFRTDLLYQMGVAEEPN-------NPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQS-------DPPDAEAL-  475 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~-------Np~-----allNLA~~L~~~~GD~deAEe~feRALeL-------DPndAeAl-  475 (540)
                      .|+|++|+..|++||+++|+       +..     +|+|+|.++. ..|++++|+.+|++||++       +|+++.+| 
T Consensus        24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence            48999999999999999999       444     9999999988 599999999999999999       99999999 


Q ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009204          476 ---SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       476 ---~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NL  513 (540)
                         ++.|.++. ..|++++|+.+|++|++++|++..+.-.+
T Consensus       103 ~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A          103 SAVYSRALALD-GLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence               99999876 47999999999999999999887554333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.32  E-value=1e-11  Score=115.20  Aligned_cols=110  Identities=18%  Similarity=0.079  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHH---
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLV---  485 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~---  485 (540)
                      ..|++++|+..|+++++.+|++   +.+++++|.+++ ..|++++|+.+|+++++++|++   +.++.++|.+++..   
T Consensus        27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~  105 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP  105 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence            3489999999999999999999   899999999999 4999999999999999998855   67899999876531   


Q ss_pred             ----cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCcc
Q 009204          486 ----RKDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEET  525 (540)
Q Consensus       486 ----rGD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~Et  525 (540)
                          .|++++|+.+|+++++.+|+++.+.                 +++|.++..+|++++
T Consensus       106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A          106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence                6899999999999999999987776                 888999999999874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.32  E-value=1.2e-11  Score=115.20  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=101.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+
T Consensus        16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~   93 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDD   93 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHHHH
Confidence            489999999999999999999999999999998 49999999999999999999999999999998765 7999999999


Q ss_pred             HHHHHHhCC---CCHHHHHHH------------HHHHHHcCCCcc
Q 009204          496 YQQAMAAEP---NSSSYASKY------------ASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDP---dnpeal~NL------------A~~L~~~GR~Et  525 (540)
                      |+++++++|   +++.++..+            |.++...|++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (359)
T 3ieg_A           94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA  138 (359)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            999999999   999998888            788999999764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.31  E-value=5.3e-12  Score=111.61  Aligned_cols=108  Identities=19%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+..|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++| ++..+..++.+.....++..+|+.+
T Consensus        19 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~   96 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKR   96 (176)
T ss_dssp             TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHH
Confidence            489999999999999999999999999999988 49999999999999999999 8887766665433333334568999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+++++++|+++.+++++|.++...|++++
T Consensus        97 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~  126 (176)
T 2r5s_A           97 LEQELAANPDNFELACELAVQYNQVGRDEE  126 (176)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Confidence            999999999999999999999999999875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=2.2e-11  Score=93.97  Aligned_cols=85  Identities=26%  Similarity=0.349  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009204          435 NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       435 ~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA  514 (540)
                      .++.++.++|..+. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            46788999999888 49999999999999999999999999999998764 79999999999999999999999999999


Q ss_pred             HHHHHcC
Q 009204          515 SFLWNTG  521 (540)
Q Consensus       515 ~~L~~~G  521 (540)
                      .++..+|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=3.1e-11  Score=112.57  Aligned_cols=107  Identities=13%  Similarity=0.056  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHcCC---CCHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEP---NNPLLLLNY------------AQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF  481 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP---~Np~allNL------------A~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~  481 (540)
                      |++++|...|+++++.+|   +++.++..+            |..+. ..|++++|+++|+++++.+|+++.++.++|.+
T Consensus        85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  163 (359)
T 3ieg_A           85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVWDAELRELRAEC  163 (359)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            444455555555555444   444444444            23333 24455555555555555555555555555444


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.. .|++++|+.+|+++++.+|+++.++.++|.++...|++++
T Consensus       164 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          164 FIK-EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            332 4445555555555555555555555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.1e-11  Score=97.09  Aligned_cols=89  Identities=16%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS------SSY  509 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn------pea  509 (540)
                      ++.++.++|..++ ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+++|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            4678899999988 59999999999999999999999999999998764 799999999999999999999      999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 009204          510 ASKYASFLWNTGGEETC  526 (540)
Q Consensus       510 l~NLA~~L~~~GR~Et~  526 (540)
                      +..+|.++..+|+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHhHhhh
Confidence            99999999999988763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.28  E-value=1.3e-11  Score=105.41  Aligned_cols=89  Identities=12%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------H
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS-------S  508 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp-------e  508 (540)
                      .+.++.++|..++ ..|++++|+++|++||+++|+++.++.++|.++.. .|++++|+++|++|++++|++.       .
T Consensus         7 ~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            7 AAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            4567889999999 59999999999999999999999999999998765 7999999999999999998763       5


Q ss_pred             HHHHHHHHHHHcCCCccc
Q 009204          509 YASKYASFLWNTGGEETC  526 (540)
Q Consensus       509 al~NLA~~L~~~GR~Et~  526 (540)
                      ++.++|.++..+|++++|
T Consensus        85 ~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            788999999999998753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.26  E-value=1.4e-11  Score=107.63  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHhcCCH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQF-LHLVTKDY--DRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~-L~~~~GD~--deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .|++++|..+|+++++.+|+++.++.++|.+ +. ..|++  ++|+.+|+++++++|+++.++.++|.++.. .|++++|
T Consensus        57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A  134 (177)
T 2e2e_A           57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QANYAQA  134 (177)
T ss_dssp             TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHH
Confidence            4899999999999999999999999999998 55 58998  999999999999999999999999998764 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Q 009204          493 EETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~  515 (540)
                      +.+|+++++++|+++....-+..
T Consensus       135 ~~~~~~al~~~p~~~~~~~~~~~  157 (177)
T 2e2e_A          135 IELWQKVMDLNSPRINRTQLVES  157 (177)
T ss_dssp             HHHHHHHHHTCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhhCCCCccHHHHHHH
Confidence            99999999999998765544433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.26  E-value=1.5e-11  Score=118.30  Aligned_cols=104  Identities=13%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          420 FRTDLLYQMGVA-EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-ALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       420 eeAe~lYqkALa-lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe-Al~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      ++|...|++|++ ++|++..+|.+||.++. ..|++++|.+.|++||+++|+++. +|.++|.++.. .|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence            566666666666 46666666666666555 366666666666666666666654 56666655433 455666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-cCCCcc
Q 009204          498 QAMAAEPNSSSYASKYASFLWN-TGGEET  525 (540)
Q Consensus       498 KALeLDPdnpeal~NLA~~L~~-~GR~Et  525 (540)
                      +|++.+|.+..++..++.+... .|++++
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence            6666666655555544444322 455443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.26  E-value=3.5e-11  Score=120.26  Aligned_cols=109  Identities=20%  Similarity=0.276  Sum_probs=102.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+.
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~  365 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY-KQGKFTESEA  365 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence            4589999999999999999999999999999988 4999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++.+|+++.++.++|.++...|++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDT  396 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999999999999874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.26  E-value=1.8e-12  Score=128.46  Aligned_cols=107  Identities=12%  Similarity=0.074  Sum_probs=100.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---------------AEALSQYADF  481 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---------------AeAl~NLA~~  481 (540)
                      .++++|..+|++++..+|+++.++.++|.+++ ..|++++|+.+|++|++++|++               +.++.++|.+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999999999 4999999999999999999999               6999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +. ..|++++|+.+|++|++++|+++.+++++|.++..+|++++
T Consensus       206 ~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  248 (336)
T 1p5q_A          206 HL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL  248 (336)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            76 47999999999999999999999999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=1.3e-11  Score=111.11  Aligned_cols=146  Identities=20%  Similarity=0.187  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc--------CCCCHHHHH
Q 009204          370 KEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE--------EPNNPLLLL  441 (540)
Q Consensus       370 ~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal--------DP~Np~all  441 (540)
                      ++++.+++.+++...+...     .-++.....+...+...   ...|++++|..+|+++++.        +|..+.++.
T Consensus        18 ~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   89 (283)
T 3edt_B           18 GSAVPLCKQALEDLEKTSG-----HDHPDVATMLNILALVY---RDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN   89 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHC-----SSSHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            4778888888877665321     01233333333333332   2348999999999999988        466778999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA--------EPN  505 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeL--------DPd  505 (540)
                      ++|.++. ..|++++|+++|++|+++        +|....++.++|.++. ..|++++|+++|++++++        +|.
T Consensus        90 ~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~  167 (283)
T 3edt_B           90 NLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPN  167 (283)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            9999988 599999999999999998        5778889999999776 579999999999999999        788


Q ss_pred             CHHHHHHHHHHHHHcCCCcc
Q 009204          506 SSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       506 npeal~NLA~~L~~~GR~Et  525 (540)
                      ...++.++|.++..+|++++
T Consensus       168 ~~~~~~~la~~~~~~g~~~~  187 (283)
T 3edt_B          168 VAKTKNNLASCYLKQGKYQD  187 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHH
Confidence            88899999999999999874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.25  E-value=2.1e-11  Score=103.49  Aligned_cols=85  Identities=13%  Similarity=0.006  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      .++.+|..+.. .|++++|+.+|++|++++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.
T Consensus        19 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35678888884 999999999999999999999999999999876 4799999999999999999999999999999999


Q ss_pred             HcCCCcc
Q 009204          519 NTGGEET  525 (540)
Q Consensus       519 ~~GR~Et  525 (540)
                      ..|++++
T Consensus        97 ~~g~~~~  103 (121)
T 1hxi_A           97 NEHNANA  103 (121)
T ss_dssp             HHHHHHH
T ss_pred             HcCCHHH
Confidence            9999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=1.3e-10  Score=113.70  Aligned_cols=109  Identities=17%  Similarity=0.080  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHH------------HH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQY------------AD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NL------------A~  480 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|++.   .++..+            |.
T Consensus        73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  151 (450)
T 2y4t_A           73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL  151 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888888888888888888888877 48888888888888888888888   776655            43


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .+. ..|++++|+.+|+++++.+|+++.++.++|.++...|++++|
T Consensus       152 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  196 (450)
T 2y4t_A          152 NAF-GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA  196 (450)
T ss_dssp             HHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence            344 467888888888888888888888888888888888887754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.25  E-value=1e-10  Score=103.74  Aligned_cols=106  Identities=13%  Similarity=0.048  Sum_probs=93.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----------------EALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----------------eAl~NL  478 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|++++++.|++.                .++.++
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  127 (213)
T 1hh8_A           49 ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI  127 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence            4589999999999999999999999999999988 49999999999999999888877                999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      |.++.. .|++++|+++|++|++++|++.......+........
T Consensus       128 ~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  170 (213)
T 1hh8_A          128 AFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK  170 (213)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTC
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcc
Confidence            998764 7999999999999999999876666666655554333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.25  E-value=7.9e-11  Score=119.92  Aligned_cols=109  Identities=16%  Similarity=0.073  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-HHHHHHHHHHHHHHcCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPD-AEALSQYADFLWLVRKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL------DPnd-AeAl~NLA~~L~~~rGD  488 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|++++++      +|++ ..++.++|.++.. .|+
T Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~  531 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LKM  531 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hcC
Confidence            489999999999999999999999999999888 499999999999999998      6765 7899999988764 789


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +++|+++|+++++++|+++.++..+|.++...|++++|
T Consensus       532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999997743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.24  E-value=9.3e-12  Score=123.60  Aligned_cols=105  Identities=15%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP-----------------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ  477 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np-----------------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~N  477 (540)
                      ..++|++|..+|++|++.+|++.                 .+++|+|.++. ..|++++|+.+|++||+++|+++.++++
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~  269 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFR  269 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45899999999999999999987                 38999999888 5999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          478 YADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       478 LA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      +|.++. ..|++++|+.+|++|++++|+++.++.+++.+.....
T Consensus       270 lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          270 RGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHHHH-TTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999876 5899999999999999999999999999998855443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=1.1e-10  Score=119.01  Aligned_cols=110  Identities=10%  Similarity=0.025  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|+++++.+|++..++.++|.++. ..|++++|+++|+++++++|++..++..+|.++.. .|++++|++
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  462 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANE  462 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHH
Confidence            3489999999999999999999999999999988 49999999999999999999999999999998764 789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++++++|+++.++..+|.++...|++++|
T Consensus       463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.23  E-value=3.8e-11  Score=97.34  Aligned_cols=91  Identities=20%  Similarity=0.189  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      .|.++.++.++|..+. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            5778899999999988 4999999999999999999999999999999765 5799999999999999999999999999


Q ss_pred             HHHHHHHcCCCcc
Q 009204          513 YASFLWNTGGEET  525 (540)
Q Consensus       513 LA~~L~~~GR~Et  525 (540)
                      +|.++...|++++
T Consensus        90 la~~~~~~~~~~~  102 (133)
T 2lni_A           90 KAAALEAMKDYTK  102 (133)
T ss_dssp             HHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhHHH
Confidence            9999999999875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.22  E-value=1e-10  Score=113.58  Aligned_cols=94  Identities=14%  Similarity=0.036  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH-HHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW-AAEE  494 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E-EAee  494 (540)
                      .|++++|..+|+++++.+|+++.+++++|.++. ..|++++|+++|++||+++|++++++.++|.++.. .|+.+ +|.+
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~  256 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR  256 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            388999999999999999999999999999888 49999999999999999999999999999988765 56665 4789


Q ss_pred             HHHHHHHhCCCCHHHHH
Q 009204          495 TYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       495 ~feKALeLDPdnpeal~  511 (540)
                      +++++++++|+++.+..
T Consensus       257 ~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhCCCChHHHH
Confidence            99999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.22  E-value=9.1e-11  Score=114.86  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++
T Consensus        39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~  116 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDD  116 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCH---HHHHHH------------HHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSS---SYASKY------------ASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnp---eal~NL------------A~~L~~~GR~Et~  526 (540)
                      |+++++++|+++   .++..+            |..+...|++++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A          117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999998   776666            6668888987643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=5.6e-11  Score=95.15  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204          431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       431 alDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal  510 (540)
                      ..+|.++.++..+|..+. ..|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHH
Confidence            456778889999999988 4999999999999999999999999999999876 47999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 009204          511 SKYASFLWNTGGEET  525 (540)
Q Consensus       511 ~NLA~~L~~~GR~Et  525 (540)
                      ..+|.++...|++++
T Consensus        84 ~~~~~~~~~~~~~~~   98 (131)
T 2vyi_A           84 GRMGLALSSLNKHVE   98 (131)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCHHH
Confidence            999999999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=2.2e-11  Score=117.23  Aligned_cols=91  Identities=14%  Similarity=0.056  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+.+|++|++.+|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|+.
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~   93 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIA   93 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHH
Confidence            3489999999999999999999999999999988 5999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCH
Q 009204          495 TYQQAMAAEPNSS  507 (540)
Q Consensus       495 ~feKALeLDPdnp  507 (540)
                      +|++|++++|+++
T Consensus        94 ~~~~al~l~p~~~  106 (281)
T 2c2l_A           94 NLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCccch
Confidence            9999999999763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.20  E-value=1.6e-10  Score=91.20  Aligned_cols=88  Identities=19%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      .+..+..+|..+. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+++++++.+|+++.++.++|.
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4678889999888 49999999999999999999999999999998764 789999999999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 009204          516 FLWNTGGEET  525 (540)
Q Consensus       516 ~L~~~GR~Et  525 (540)
                      ++...|++++
T Consensus        81 ~~~~~~~~~~   90 (118)
T 1elw_A           81 ALEFLNRFEE   90 (118)
T ss_dssp             HHHHTTCHHH
T ss_pred             HHHHHhhHHH
Confidence            9999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.20  E-value=2.1e-10  Score=91.05  Aligned_cols=92  Identities=25%  Similarity=0.364  Sum_probs=82.2

Q ss_pred             cCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009204          432 EEPNN-PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA  510 (540)
Q Consensus       432 lDP~N-p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal  510 (540)
                      .+|.+ ..++.++|..+. ..|++++|+++|+++++.+|++..++.++|.++.. .|++++|+.+|+++++.+|+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            45666 788999999888 49999999999999999999999999999987764 7899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 009204          511 SKYASFLWNTGGEET  525 (540)
Q Consensus       511 ~NLA~~L~~~GR~Et  525 (540)
                      .++|.++...|++++
T Consensus        81 ~~la~~~~~~~~~~~   95 (125)
T 1na0_A           81 YNLGNAYYKQGDYDE   95 (125)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhcCHHH
Confidence            999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.20  E-value=6.9e-11  Score=106.48  Aligned_cols=125  Identities=15%  Similarity=0.192  Sum_probs=103.4

Q ss_pred             HHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 009204          397 HETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE--------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-  467 (540)
Q Consensus       397 ~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal--------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeL-  467 (540)
                      +.....+...+.+.   ...|++++|..+|++++..        +|....++.++|.++. ..|++++|+++|++++++ 
T Consensus        82 ~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B           82 PAVAATLNNLAVLY---GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Confidence            34444444433332   2458999999999999998        5777889999999988 599999999999999999 


Q ss_pred             -------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------
Q 009204          468 -------DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAA--------------------------------------  502 (540)
Q Consensus       468 -------DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeL--------------------------------------  502 (540)
                             +|....++.++|.++.. .|++++|+.+|++++++                                      
T Consensus       158 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T 3edt_B          158 ATRLGPDDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE  236 (283)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence                   88888999999998765 79999999999999986                                      


Q ss_pred             -----------CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          503 -----------EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       503 -----------DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                                 .|..+.++.++|.++..+|++++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence                       255667889999999999998764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.5e-10  Score=95.74  Aligned_cols=93  Identities=16%  Similarity=0.072  Sum_probs=86.3

Q ss_pred             HcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          431 AEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       431 alDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      ..+|.+...+..+|..+. ..|++++|+++|+++++++|++   ..++.++|.++. ..|++++|+.+|+++++++|+++
T Consensus        22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCH
T ss_pred             ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCH
Confidence            457889999999999988 5999999999999999999998   899999998776 47999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCcc
Q 009204          508 SYASKYASFLWNTGGEET  525 (540)
Q Consensus       508 eal~NLA~~L~~~GR~Et  525 (540)
                      .+++++|.++...|++++
T Consensus       100 ~~~~~~a~~~~~~~~~~~  117 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQ  117 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHH
Confidence            999999999999999874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.18  E-value=1.1e-10  Score=107.26  Aligned_cols=109  Identities=9%  Similarity=0.013  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH-----------------hcCCHHHHHHHHHHHHHcCCCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL---LLLNYAQFLHL-----------------VTKDYDRAEECFKRAIQSDPPDAEAL  475 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~---allNLA~~L~~-----------------~~GD~deAEe~feRALeLDPndAeAl  475 (540)
                      .|++++|+..|+++++.+|+++.   +++.+|.+++.                 ..|++++|+..|+++++.+|+++.+.
T Consensus        54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            48999999999999999999875   78888887763                 15789999999999999999998654


Q ss_pred             -----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCcc
Q 009204          476 -----------------SQYADFLWLVRKDLWAAEETYQQAMAAEPNSS---SYASKYASFLWNTGGEET  525 (540)
Q Consensus       476 -----------------~NLA~~L~~~rGD~EEAee~feKALeLDPdnp---eal~NLA~~L~~~GR~Et  525 (540)
                                       ..+|.+++ .+|++++|+..|+++++..|+++   .++..+|.++..+|+.++
T Consensus       134 ~a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  202 (225)
T 2yhc_A          134 DATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ  202 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence                             45676665 47899999999999999999987   679999999999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=7.9e-11  Score=109.26  Aligned_cols=105  Identities=17%  Similarity=0.074  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCHHHH--------
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN---PLLLLNYAQFLHLV--------TKDYDRAEECFKRAIQSDPPDAEAL--------  475 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N---p~allNLA~~L~~~--------~GD~deAEe~feRALeLDPndAeAl--------  475 (540)
                      ..|++++|...|+++++.+|++   +.+++++|.++. .        .|++++|+.+|+++++.+|++..+.        
T Consensus        64 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~  142 (261)
T 3qky_A           64 QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE  142 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH
Confidence            3489999999999999998855   578999999877 6        8999999999999999999997766        


Q ss_pred             ---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcC
Q 009204          476 ---------SQYADFLWLVRKDLWAAEETYQQAMAAEPN---SSSYASKYASFLWNTG  521 (540)
Q Consensus       476 ---------~NLA~~L~~~rGD~EEAee~feKALeLDPd---npeal~NLA~~L~~~G  521 (540)
                               .++|.++. ..|++++|+.+|+++++..|+   .+.+++.+|.++..+|
T Consensus       143 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          143 LRAKLARKQYEAARLYE-RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence                     77898776 479999999999999999998   5679999999999873

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=6.3e-11  Score=113.66  Aligned_cols=108  Identities=13%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVT-KDYDRAEECFKRAIQSDPPD------AEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~-GD~deAEe~feRALeLDPnd------AeAl~NLA~~  481 (540)
                      ..|++++|+.+|++|+++.|..      ..++.++|.++. .. |++++|+++|++|+++.|++      +.++.++|.+
T Consensus        89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  167 (292)
T 1qqe_A           89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL  167 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            4589999999999999998764      468899999888 46 99999999999999998865      5689999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCCc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSSS-------YASKYASFLWNTGGEE  524 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnpe-------al~NLA~~L~~~GR~E  524 (540)
                      +.. .|++++|+.+|+++++++|++..       ++.++|.++..+|+++
T Consensus       168 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  216 (292)
T 1qqe_A          168 KAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (292)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence            764 79999999999999999998754       6789999999999976

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.17  E-value=1.2e-10  Score=116.37  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=101.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|+++++.+|+ +.++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++. ..|++++|+++
T Consensus       256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~  332 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKED  332 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Confidence            48999999999999999999 999999999888 5999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |+++++++|+++.++.++|.++...|++++|
T Consensus       333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          333 FQKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.17  E-value=8.6e-11  Score=108.04  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHH----
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE---ALSQYADFLWLV----  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe---Al~NLA~~L~~~----  485 (540)
                      .|++++|+..|+++++.+|+++   .+++++|.+++ ..|++++|+..|+++++.+|+++.   ++..+|.++...    
T Consensus        17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            4899999999999999999874   78999999998 599999999999999999999975   788888876542    


Q ss_pred             -------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCcc
Q 009204          486 -------------RKDLWAAEETYQQAMAAEPNSSSYA-----------------SKYASFLWNTGGEET  525 (540)
Q Consensus       486 -------------rGD~EEAee~feKALeLDPdnpeal-----------------~NLA~~L~~~GR~Et  525 (540)
                                   .|++++|+..|+++++.+|+++.++                 ..+|.++...|++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence                         4689999999999999999998654                 578889999999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=4.1e-10  Score=89.69  Aligned_cols=89  Identities=28%  Similarity=0.362  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|..+|++++..+|+++.++.++|.++. ..|++++|+++|+++++.+|++..++..+|.++. ..|++++|+.+
T Consensus        48 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~  125 (136)
T 2fo7_A           48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEY  125 (136)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HHccHHHHHHH
Confidence            389999999999999999999999999999988 5999999999999999999999999999999776 57999999999


Q ss_pred             HHHHHHhCCCC
Q 009204          496 YQQAMAAEPNS  506 (540)
Q Consensus       496 feKALeLDPdn  506 (540)
                      |++++..+|++
T Consensus       126 ~~~~~~~~~~~  136 (136)
T 2fo7_A          126 YQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHSTTC
T ss_pred             HHHHHccCCCC
Confidence            99999999974

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.15  E-value=2.1e-11  Score=109.17  Aligned_cols=108  Identities=12%  Similarity=-0.024  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----------------EALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----------------eAl~NLA  479 (540)
                      .+++++|...++......+..+..+.++|..++ ..|++++|+.+|++|+++.|+++                .++.++|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la   95 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA   95 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            477888888888877777888889999999988 49999999999999999999998                8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      .++. ..|++++|+.++++|++++|+++.+++++|.++..+|++++
T Consensus        96 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~  140 (198)
T 2fbn_A           96 TCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE  140 (198)
T ss_dssp             HHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHH
Confidence            9876 47999999999999999999999999999999999999874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=6.3e-10  Score=110.21  Aligned_cols=104  Identities=10%  Similarity=-0.043  Sum_probs=82.0

Q ss_pred             CCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAE---------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQY  478 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal---------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NL  478 (540)
                      .|++++|+.+|++|+++         +|....++.|+|.+++ .+|++++|+.+|++++++        ++..+.++.+.
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            48888888888888876         6777788888888888 488888888888888886        44667888888


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          479 ADFLWLV-RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       479 A~~L~~~-rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      |..+... ++++++|+++|++|++++|++++++.+++.++...
T Consensus       143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            7655432 35688888888888888888888888888775543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.15  E-value=9.7e-12  Score=128.58  Aligned_cols=107  Identities=9%  Similarity=0.040  Sum_probs=100.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD---------------AEALSQYADF  481 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd---------------AeAl~NLA~~  481 (540)
                      +++++|...|++++..+|+++.++.++|..++ ..|++++|+.+|++||+++|++               ..+|.++|.+
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999 4999999999999999999999               7999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++. .|++++|+.+|++|++++|+++.+++++|.+|..+|++++
T Consensus       327 ~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~  369 (457)
T 1kt0_A          327 YLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES  369 (457)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHH
Confidence            764 7999999999999999999999999999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=2.3e-10  Score=93.52  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=75.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 009204          432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP--NSSSY  509 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP--dnpea  509 (540)
                      .+|+++.+++++|.++. ..|++++|+++|++|++++|+++.++.++|.++. ..|++++|+++|++|++++|  .+...
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            48999999999999998 4999999999999999999999999999999876 57999999999999999987  45666


Q ss_pred             HHHHHHHHHHcCC
Q 009204          510 ASKYASFLWNTGG  522 (540)
Q Consensus       510 l~NLA~~L~~~GR  522 (540)
                      ...+..++...+.
T Consensus        80 ~~~l~~~l~~~~~   92 (100)
T 3ma5_A           80 LSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccc
Confidence            7777777665443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.3e-10  Score=114.72  Aligned_cols=110  Identities=16%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHH---
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE------ALSQYADFLWLV---  485 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe------Al~NLA~~L~~~---  485 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.      ++.++|.++. .   
T Consensus       350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  427 (514)
T 2gw1_A          350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPT  427 (514)
T ss_dssp             TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCC
T ss_pred             HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhh
Confidence            4589999999999999999999999999999888 499999999999999999999865      8999998765 5   


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .|++++|+++|+++++++|+++.++..+|.++...|++++|
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence            68999999999999999999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.13  E-value=1.6e-10  Score=92.78  Aligned_cols=90  Identities=13%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 009204          434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS-------  506 (540)
Q Consensus       434 P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn-------  506 (540)
                      |..+..+.++|..+. ..|++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|++++.++|++       
T Consensus         1 ~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (131)
T 1elr_A            1 GKQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQI   78 (131)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             ChHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHH
Confidence            345678899999888 49999999999999999999999999999998764 789999999999999999987       


Q ss_pred             HHHHHHHHHHHHHcCCCcc
Q 009204          507 SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       507 peal~NLA~~L~~~GR~Et  525 (540)
                      +.++.++|.++...|++++
T Consensus        79 ~~~~~~la~~~~~~~~~~~   97 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKD   97 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccHHH
Confidence            9999999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=8.5e-11  Score=112.74  Aligned_cols=109  Identities=12%  Similarity=-0.031  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~------Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|..+|++|+++.+.      .+.++.++|.++. ..|++++|+.+|++|+++.|..      +.++.++|.++.
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            48999999999999998532      2578999999888 5999999999999999998754      568999998765


Q ss_pred             HHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009204          484 LVR-KDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~r-GD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et~  526 (540)
                       .. |++++|+++|++|+++.|.+      ..++.++|.++..+|++++|
T Consensus       129 -~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A          129 -NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             -HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             -HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence             44 99999999999999998865      56799999999999998753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=1.4e-10  Score=114.98  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .+++++|...|++|++++|+++.++.++|..+..   ..+++++|+++|++|+.++|+++.++.++|.++. ..|++++|
T Consensus       188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A  266 (472)
T 4g1t_A          188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKA  266 (472)
T ss_dssp             SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHH
T ss_pred             chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HcCchHHH
Confidence            3455556666666666666666666555544321   1345556666666666666666666666665543 35666666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      +++|++|++.+|+++.++.++|.++...+
T Consensus       267 ~~~~~~al~~~p~~~~~~~~lg~~y~~~~  295 (472)
T 4g1t_A          267 IELLKKALEYIPNNAYLHCQIGCCYRAKV  295 (472)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            66666666666666666666666655443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.12  E-value=2.1e-10  Score=99.55  Aligned_cols=87  Identities=20%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQS------------------DPPDAEALSQYADFLWLVRKDLWAAEETYQQ  498 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeL------------------DPndAeAl~NLA~~L~~~rGD~EEAee~feK  498 (540)
                      +..+.+.|..++ ..|++++|+.+|++||++                  +|.++.++.++|.++.. .|++++|+.++++
T Consensus        11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~   88 (162)
T 3rkv_A           11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            467888999999 599999999999999999                  77888999999998765 7899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          499 AMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       499 ALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++++|+++.+++++|.++..+|++++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~  115 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDE  115 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHH
Confidence            999999999999999999999999874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.12  E-value=5.9e-10  Score=93.92  Aligned_cols=88  Identities=16%  Similarity=0.037  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      .+..+.++|..++ ..|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.
T Consensus        12 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           12 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3567888999888 4999999999999999999999999999999876 4799999999999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 009204          516 FLWNTGGEET  525 (540)
Q Consensus       516 ~L~~~GR~Et  525 (540)
                      ++..+|++++
T Consensus        90 ~~~~~~~~~~   99 (166)
T 1a17_A           90 SNMALGKFRA   99 (166)
T ss_dssp             HHHHTTCHHH
T ss_pred             HHHHhccHHH
Confidence            9999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.11  E-value=3.1e-10  Score=109.23  Aligned_cols=90  Identities=17%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009204          434 PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       434 P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NL  513 (540)
                      |.++..+.++|..++ ..|++++|+.+|++|++++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.+++++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            678899999999999 4999999999999999999999999999999876 47999999999999999999999999999


Q ss_pred             HHHHHHcCCCcc
Q 009204          514 ASFLWNTGGEET  525 (540)
Q Consensus       514 A~~L~~~GR~Et  525 (540)
                      |.++..+|++++
T Consensus        79 g~~~~~~g~~~~   90 (281)
T 2c2l_A           79 GQCQLEMESYDE   90 (281)
T ss_dssp             HHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHH
Confidence            999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.11  E-value=9.3e-11  Score=115.85  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=95.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|..+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~  359 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY-RENKFDDCET  359 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-TTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-HcCCHHHHHH
Confidence            3478888999999999999999999999998888 4899999999999999999999999988888765 4788999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|+++++.+|+++.++.++|.++...|++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999999999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.10  E-value=2.8e-10  Score=105.83  Aligned_cols=87  Identities=21%  Similarity=0.131  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-------DAE-----ALSQYADFLWLVRKDLWAAEETYQQAMAA--  502 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPn-------dAe-----Al~NLA~~L~~~rGD~EEAee~feKALeL--  502 (540)
                      ...+.+.|..++ ..|++++|+.+|++||+++|+       +..     +|.|+|.++.. .|++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            466788999999 599999999999999999999       444     99999998765 79999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCCcc
Q 009204          503 -----EPNSSSYA----SKYASFLWNTGGEET  525 (540)
Q Consensus       503 -----DPdnpeal----~NLA~~L~~~GR~Et  525 (540)
                           +|+++.+|    ++.|.+|..+|++++
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE  120 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAE  120 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHH
Confidence                 99999999    999999999999985

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.09  E-value=4.2e-10  Score=92.12  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS---SSYAS  511 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn---peal~  511 (540)
                      .+++++|..+. ..|++++|+.+|+++++.+|+++   .++.++|.+++. .|++++|+.+|+++++.+|++   +.+++
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            35678898888 49999999999999999999999   899999998764 799999999999999999999   89999


Q ss_pred             HHHHHHHHcCCCcc
Q 009204          512 KYASFLWNTGGEET  525 (540)
Q Consensus       512 NLA~~L~~~GR~Et  525 (540)
                      ++|.++..+|++++
T Consensus        81 ~la~~~~~~g~~~~   94 (129)
T 2xev_A           81 KLGLSQYGEGKNTE   94 (129)
T ss_dssp             HHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHH
Confidence            99999999999874

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.06  E-value=1.5e-09  Score=103.46  Aligned_cols=110  Identities=10%  Similarity=0.013  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCH----HHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAI---QSDPPDA----EALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRAL---eLDPndA----eAl~NLA~~  481 (540)
                      ..|++++|..+|++|+...+..      ..++.++|.++. ..|++++|+.+|++|+   +..|++.    .++.++|.+
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence            4579999999999999876554      568999999988 4999999999999999   5567654    689999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCccc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPN------SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPd------npeal~NLA~~L~~~GR~Et~  526 (540)
                      +. ..|++++|+++|++|+++.++      -+.++.++|.++..+|++++|
T Consensus       206 y~-~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          206 LY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HH-HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            76 479999999999999998653      277899999999999999865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=7.2e-10  Score=114.24  Aligned_cols=109  Identities=17%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      ..|++++|...|+++++.+|.++ .+|.+++.++. ..|++++|.++|++|++..|.+...+...+.+.+...|++++|.
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence            35899999999999999999996 69999999888 49999999999999999999988888777766555579999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .+|++|++.+|+++.+|.+|+.++...|+.+
T Consensus       412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~  442 (530)
T 2ooe_A          412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  442 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence            9999999999999999999999999999875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=1.9e-10  Score=91.41  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPL-LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~-allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      |++++|..+|+++++.+|+++. ++.++|.++. ..|++++|+++|+++++++|+++.++.+         +.+.+|+.+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~a~~~   83 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVMDILNF   83 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHHHHH
Confidence            5556666666666666666655 5666665555 3566666666666666666665555422         224555555


Q ss_pred             HHHHHHhCCCC
Q 009204          496 YQQAMAAEPNS  506 (540)
Q Consensus       496 feKALeLDPdn  506 (540)
                      |++++..+|++
T Consensus        84 ~~~~~~~~p~~   94 (99)
T 2kc7_A           84 YNKDMYNQLEH   94 (99)
T ss_dssp             HCCTTHHHHCC
T ss_pred             HHHHhccCccc
Confidence            55555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.03  E-value=3.4e-09  Score=98.33  Aligned_cols=104  Identities=10%  Similarity=0.036  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV----TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~----~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD  488 (540)
                      .+++++|..+|++|++.+  ++.++.++|.++. .    .+++++|+++|++|++.  +++.++.++|.++...   .++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC
Confidence            578888888888888875  7888888888777 6    88888888888888887  4888888888866431   678


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCccc
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWN----TGGEETC  526 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~----~GR~Et~  526 (540)
                      +++|+++|++|++++  ++.++.++|.++..    .++++++
T Consensus       130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A  169 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKA  169 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            888888888888876  67788888888887    7776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=3.4e-10  Score=103.98  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEE--------PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--------DPPDAEALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalD--------P~Np~allNLA~~L~~~~GD~deAEe~feRALeL--------DPndAeAl~NL  478 (540)
                      ..|++++|..+|+++++..        |....++.++|.++. ..|++++|+++|++++++        +|..+.++.++
T Consensus       123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  201 (311)
T 3nf1_A          123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL  201 (311)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4589999999999999984        666778999999988 599999999999999999        78888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHH
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAA-------------------------------------------------EPNSSSY  509 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeL-------------------------------------------------DPdnpea  509 (540)
                      |.++.. .|++++|+++|++++++                                                 +|..+.+
T Consensus       202 a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  280 (311)
T 3nf1_A          202 ASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT  280 (311)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence            998764 78999999999999984                                                 4677788


Q ss_pred             HHHHHHHHHHcCCCccc
Q 009204          510 ASKYASFLWNTGGEETC  526 (540)
Q Consensus       510 l~NLA~~L~~~GR~Et~  526 (540)
                      +.++|.++..+|++++|
T Consensus       281 ~~~la~~~~~~g~~~~A  297 (311)
T 3nf1_A          281 LKNLGALYRRQGKFEAA  297 (311)
T ss_dssp             HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHH
Confidence            99999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=3.1e-10  Score=104.25  Aligned_cols=110  Identities=25%  Similarity=0.239  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE--------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD--------PPDAEALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal--------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLD--------PndAeAl~NL  478 (540)
                      ..|++++|..+|++++..        +|....++.++|.++. ..|++++|+++|++++++.        |....++.++
T Consensus        81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  159 (311)
T 3nf1_A           81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL  159 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            348999999999999988        4666789999999988 5999999999999999984        6667789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAA--------EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeL--------DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      |.++. ..|++++|+++|++++++        +|....++.++|.++..+|++++|
T Consensus       160 a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          160 ALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             HHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            98775 579999999999999998        788888999999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.01  E-value=5.2e-10  Score=91.91  Aligned_cols=109  Identities=8%  Similarity=0.040  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np------~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|..+|+++++..+...      .++.++|.++. ..|++++|+++|++|+++.+..      +.++.++|.++.
T Consensus        22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            4899999999999999865432      47889999888 4999999999999999986554      668889998776


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPN------SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPd------npeal~NLA~~L~~~GR~Et~  526 (540)
                       ..|++++|++++++++++.+.      .+.++.++|.++..+|++++|
T Consensus       101 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A          101 -LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence             479999999999999987432      246789999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.00  E-value=8.1e-10  Score=105.25  Aligned_cols=109  Identities=11%  Similarity=0.033  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-------DPPDAEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeL-------DPndAeAl~NLA~~  481 (540)
                      ..+++++|..+|++|+...+..      ..++.++|.++. ..|++++|+.+|++|+++       .+..+.++.++|.+
T Consensus       127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 3u3w_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            3479999999999999975443      337899999988 499999999999999952       23345689999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCC-cc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGE-ET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~-Et  525 (540)
                      +.. .|++++|++++++|+++.+..      +.++.++|.++..+|+. ++
T Consensus       206 y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~  255 (293)
T 3u3w_A          206 LYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            765 799999999999999987654      78999999999999964 53

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.99  E-value=1.6e-10  Score=95.83  Aligned_cols=75  Identities=21%  Similarity=0.172  Sum_probs=66.8

Q ss_pred             cCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          451 TKDYDRAEECFKRAIQS---DPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       451 ~GD~deAEe~feRALeL---DPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .|++++|+.+|++|+++   +|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.++|.++..+|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            78999999999999999   69999999999998764 79999999999999999999999999999999999998753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.99  E-value=5.6e-10  Score=108.23  Aligned_cols=105  Identities=10%  Similarity=0.082  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADFLWLV  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np----~allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~L~~~  485 (540)
                      .|++++|..+|+++++.+|+++    .++.++|.++. ..|++++|+++|++|+++      +|..+.++.++|.++. .
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~  138 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-V  138 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-H
Confidence            4899999999999999999998    57889999988 499999999999999998      6888899999999776 5


Q ss_pred             cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 009204          486 RKDLWAAEETYQQAMAA------EPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       486 rGD~EEAee~feKALeL------DPdnpeal~NLA~~L~~~GR  522 (540)
                      .|++++|+++|++|+++      .|....++.++|.++..+|+
T Consensus       139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            79999999999999999      67778899999999999999

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.96  E-value=3.5e-10  Score=90.00  Aligned_cols=82  Identities=12%  Similarity=0.044  Sum_probs=71.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHcCC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLWLVRKD  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~~~rGD  488 (540)
                      ..|++++|..+|+++++.+|+++.++.++|.++. ..|++++|+++|++|++++|++      ..++.++|.++.. .|+
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~   93 (111)
T 2l6j_A           16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA-VGS   93 (111)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH-HHC
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH-HHh
Confidence            4589999999999999999999999999999988 5999999999999999999999      8888888887654 566


Q ss_pred             HHHHHHHHHH
Q 009204          489 LWAAEETYQQ  498 (540)
Q Consensus       489 ~EEAee~feK  498 (540)
                      +++|++.+++
T Consensus        94 ~~~a~~~~~~  103 (111)
T 2l6j_A           94 VQIPVVEVDE  103 (111)
T ss_dssp             CCCCSSSSSS
T ss_pred             HhhhHhHHHH
Confidence            6666655543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.96  E-value=7.8e-10  Score=96.49  Aligned_cols=109  Identities=12%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC----HHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVA------EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS---DPPD----AEALSQYADFL  482 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALa------lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeL---DPnd----AeAl~NLA~~L  482 (540)
                      .|++++|..+|+++++      ..|....++.++|.++. ..|++++|+++|++|+++   .+++    +.++.++|.++
T Consensus        39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  117 (203)
T 3gw4_A           39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA  117 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence            4899999999999999      55667788999999988 499999999999999998   4433    56788999877


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCCccc
Q 009204          483 WLVRKDLWAAEETYQQAMAAEP--NSS----SYASKYASFLWNTGGEETC  526 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDP--dnp----eal~NLA~~L~~~GR~Et~  526 (540)
                      .. .|++++|++++++++++.+  +++    .++.++|.++..+|+++++
T Consensus       118 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A          118 LH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            64 7999999999999998643  233    2468999999999998754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=3.5e-09  Score=101.94  Aligned_cols=92  Identities=24%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHH-------------------
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAE-------------------  493 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAe-------------------  493 (540)
                      -|++...+..+|..+.. .|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+                   
T Consensus       113 lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            49999999999999884 9999999999999999999999999999997754 67777765                   


Q ss_pred             ---------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          494 ---------------ETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       494 ---------------e~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                                     +.|+++++++|+++.+++++|.+|...|++++|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence                           456666888999999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.95  E-value=1.1e-09  Score=107.16  Aligned_cols=108  Identities=11%  Similarity=0.026  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNN-------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA------EALSQYADFL  482 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~N-------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA------eAl~NLA~~L  482 (540)
                      .|++++|..+|++|+++.+..       ..++.++|.++. ..|++++|+++|++|+++.+...      .++.++|.++
T Consensus       156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK  234 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            477888888888888774332       347777887777 48888888888888887754332      4777788766


Q ss_pred             HHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCCcc
Q 009204          483 WLVRKDLWAAEETYQQAMA-----AE-PNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALe-----LD-Pdnpeal~NLA~~L~~~GR~Et  525 (540)
                      . ..|++++|+++|++|++     .+ |..+.++.++|.++..+|++++
T Consensus       235 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  282 (383)
T 3ulq_A          235 N-SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK  282 (383)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             H-HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHH
Confidence            5 46788888888888888     46 7777778888888888888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.95  E-value=1.1e-08  Score=94.87  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV----TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~----~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD  488 (540)
                      .+++++|..+|++|++.+  ++.++.++|.++. .    .+++++|+++|++|++.+  ++.++.++|.++...   .++
T Consensus        91 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~  165 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD  165 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence            689999999999999974  8999999999887 6    899999999999999986  788999999876531   689


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcccc
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWN----TGGEETCF  527 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~----~GR~Et~~  527 (540)
                      +++|+++|++|++.  +++.++.++|.++..    .+++++|.
T Consensus       166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~  206 (273)
T 1ouv_A          166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEAL  206 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            99999999999988  468899999999999    88877643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.94  E-value=8.1e-09  Score=81.89  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 009204          441 LNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYA--SKYASFL  517 (540)
Q Consensus       441 lNLA~~L~~~~GD~deAEe~feRALeLDPndAe-Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal--~NLA~~L  517 (540)
                      ++.|..+. ..|++++|+++|+++++++|+++. ++.++|.++.. .|++++|+++|+++++++|+++.++  ..++.++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            46788788 499999999999999999999999 99999998765 7899999999999999999999988  6667766


Q ss_pred             HHcCCCccc
Q 009204          518 WNTGGEETC  526 (540)
Q Consensus       518 ~~~GR~Et~  526 (540)
                      ....+....
T Consensus        82 ~~~~~~~~~   90 (99)
T 2kc7_A           82 NFYNKDMYN   90 (99)
T ss_dssp             HHHCCTTHH
T ss_pred             HHHHHHhcc
Confidence            665554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.93  E-value=1.2e-09  Score=100.05  Aligned_cols=106  Identities=12%  Similarity=0.074  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADFLWL  484 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np----~allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~L~~  484 (540)
                      ..|++++|..+|+++++.+|+++    .++.++|.++. ..|++++|+++|++|+++      .|..+.++.++|.++. 
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-   94 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-   94 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-
Confidence            34899999999999999999995    67889999888 499999999999999998      5666789999998776 


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 009204          485 VRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGG  522 (540)
Q Consensus       485 ~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR  522 (540)
                      ..|++++|+++|++++++.|..      ..++.++|.++...|+
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            5799999999999999987644      3488999999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.93  E-value=1.6e-09  Score=103.28  Aligned_cols=109  Identities=8%  Similarity=0.012  Sum_probs=90.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|..+|+++++..|....      ++.++|.++. ..|++++|+.+|++++++.|..      +.++.++|.++.
T Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence            48899999999999988665544      8888898888 4999999999999999887766      778888888765


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et~  526 (540)
                       ..|++++|+++|++|+++.+..      +.++.++|.++..+|++++|
T Consensus       279 -~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          279 -LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence             4788999999999999886644      66888999999999987753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=2.9e-09  Score=109.70  Aligned_cols=103  Identities=14%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009204          421 RTDLLYQMGVA-EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA-EALSQYADFLWLVRKDLWAAEETYQQ  498 (540)
Q Consensus       421 eAe~lYqkALa-lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA-eAl~NLA~~L~~~rGD~EEAee~feK  498 (540)
                      +|...|++|++ .+|++..+|.++|.++. ..|++++|...|++|++++|+++ .+|.+++.++.. .|++++|.++|++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~  381 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-hcCHHHHHHHHHH
Confidence            66666666665 56666666666666555 36666666666666666666664 466666665433 4556666666666


Q ss_pred             HHHhCCCCHHHHHHHHHHH-HHcCCCcc
Q 009204          499 AMAAEPNSSSYASKYASFL-WNTGGEET  525 (540)
Q Consensus       499 ALeLDPdnpeal~NLA~~L-~~~GR~Et  525 (540)
                      |++..|.+...+...+.+. ...|++++
T Consensus       382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          382 AREDARTRHHVYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             HHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred             HHhccCCchHHHHHHHHHHHHHcCChhH
Confidence            6666666555555444432 23555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.92  E-value=1.8e-08  Score=96.00  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|...|+++++..|....      .+..+|.++. ..|++++|+.+|++|+++.+..      +.++.++|.++.
T Consensus        88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            48999999999999999887663      3556777666 5899999999999999876554      668999999876


Q ss_pred             HHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAM---AAEPNSS----SYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKAL---eLDPdnp----eal~NLA~~L~~~GR~Et~  526 (540)
                      . .|++++|+.+|++|+   +..|++.    .++.++|.++..+|++++|
T Consensus       167 ~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 2qfc_A          167 E-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence            4 799999999999999   5577654    5899999999999998854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=1.5e-09  Score=104.82  Aligned_cols=106  Identities=8%  Similarity=0.002  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN--N----PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~--N----p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|..+|++|+++.+.  +    ..++.++|.++. . |++++|+++|++|+++.|..      +.++.++|.++.
T Consensus        89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  166 (307)
T 2ifu_A           89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV  166 (307)
T ss_dssp             TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            47888888888888887432  2    356777887765 4 88888888888888887654      567788887765


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEE  524 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~E  524 (540)
                       ..|++++|+++|++|+++.|++      ..++.++|.++..+|+++
T Consensus       167 -~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~  212 (307)
T 2ifu_A          167 -RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV  212 (307)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence             4688888888888888876644      246777788888888865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.91  E-value=1.2e-09  Score=107.01  Aligned_cols=110  Identities=10%  Similarity=0.029  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHHHHHHc---CC---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE---EP---NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP-------PDAEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal---DP---~Np~allNLA~~L~~~~GD~deAEe~feRALeLDP-------ndAeAl~NLA~~  481 (540)
                      ..|++++|..+|++|+++   .+   ..+.++.++|.++.. .|++++|+.+|++|+++.+       ..+.++.++|.+
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  193 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN  193 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence            348999999999999997   23   356789999999884 9999999999999999843       335689999987


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCccc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPNSS------SYASKYASFLWNTGGEETC  526 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPdnp------eal~NLA~~L~~~GR~Et~  526 (540)
                      +. ..|++++|+++|++|+++.|...      .++.++|.++..+|++++|
T Consensus       194 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  243 (383)
T 3ulq_A          194 FL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA  243 (383)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence            76 47999999999999999866433      4899999999999998753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.90  E-value=3.4e-09  Score=92.41  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHcCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ------SDPPDAEALSQYADFLWLVRKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe------LDPndAeAl~NLA~~L~~~rGD~  489 (540)
                      .|++++|+..++......+..+.++.++|.++. ..|++++|+.+|++|++      ..|..+.++.++|.++. ..|++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~   82 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNW   82 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCH
Confidence            589999999666555433367889999999888 49999999999999999      56667789999998776 47999


Q ss_pred             HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCCccc
Q 009204          490 WAAEETYQQAMAA---EPNS----SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       490 EEAee~feKALeL---DPdn----peal~NLA~~L~~~GR~Et~  526 (540)
                      ++|+++|++|+++   .+++    ..++.++|.++..+|+++++
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  126 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA  126 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999998   4433    45789999999999998753

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.88  E-value=1.1e-08  Score=94.03  Aligned_cols=100  Identities=13%  Similarity=0.026  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH---cC
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV----TKDYDRAEECFKRAIQSDP--PDAEALSQYADFLWLV---RK  487 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~----~GD~deAEe~feRALeLDP--ndAeAl~NLA~~L~~~---rG  487 (540)
                      .++++|..+|++|+.  +.++.+++++|.++. .    .+|+++|+++|++|++..|  +++.++.++|.++...   .+
T Consensus        67 ~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           67 ADYPQARQLAEKAVE--AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            389999999999965  679999999999876 4    7899999999999999988  4599999999977642   56


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      |+++|+.+|++|+++ |+++.+++++|.+|...
T Consensus       144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence            899999999999998 78888999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.88  E-value=2.6e-09  Score=101.86  Aligned_cols=105  Identities=12%  Similarity=0.073  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP----LLLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADFLWLV  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np----~allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~L~~~  485 (540)
                      .|++++|..+|+++++.+|+++    .++.++|.++. ..|++++|+.+|++|+++      .|..+.++.++|.++. .
T Consensus        22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~   99 (406)
T 3sf4_A           22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-V   99 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred             hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-H
Confidence            4899999999999999999995    57889999888 499999999999999998      5666789999998776 4


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 009204          486 RKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGG  522 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR  522 (540)
                      .|++++|+.+|++|+++.|..      +.++.++|.++...|+
T Consensus       100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A          100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            799999999999999997754      4589999999999998

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.87  E-value=1.7e-08  Score=77.70  Aligned_cols=68  Identities=28%  Similarity=0.324  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~  484 (540)
                      .+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++..
T Consensus        22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            489999999999999999999999999999988 49999999999999999999999999999987643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=2e-09  Score=104.31  Aligned_cols=110  Identities=13%  Similarity=0.001  Sum_probs=95.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L  482 (540)
                      ..|++++|..+|++++++.|.+..      ++.++|.++. ..|++++|+++|++++++.|..      +.++.++|.++
T Consensus       235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  313 (411)
T 4a1s_A          235 LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY  313 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            348999999999999998776444      8899999888 5999999999999999998855      77899999877


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009204          483 WLVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et~  526 (540)
                      . ..|++++|+++|++++++.+..      ..++.++|.++..+|++++|
T Consensus       314 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          314 T-LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H-HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence            5 5799999999999999986543      45899999999999998754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.86  E-value=2.5e-09  Score=103.27  Aligned_cols=109  Identities=18%  Similarity=0.098  Sum_probs=91.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP--D----AEALSQYADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeLDPn--d----AeAl~NLA~~L  482 (540)
                      ..|++++|..+|++|+.+.+..      ..++.++|.++. ..|++++|+.+|++|+++.+.  +    +.++.++|.++
T Consensus        48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~  126 (307)
T 2ifu_A           48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM  126 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3489999999999999986543      457889998887 599999999999999998432  2    46788999876


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009204          483 WLVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et~  526 (540)
                      . . |++++|+++|++|+++.|..      ..++.++|.++..+|++++|
T Consensus       127 ~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  174 (307)
T 2ifu_A          127 E-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA  174 (307)
T ss_dssp             T-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            4 4 99999999999999998754      57899999999999998753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.83  E-value=2.4e-09  Score=106.35  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..++|++|+.+|++||+++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.+++.+....+++.++|..
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999998 599999999999999999999999999999876666778899999


Q ss_pred             HHHHHHHhCCCCHH
Q 009204          495 TYQQAMAAEPNSSS  508 (540)
Q Consensus       495 ~feKALeLDPdnpe  508 (540)
                      .|++++..+|+++.
T Consensus       321 ~~~~~l~~~p~~~~  334 (338)
T 2if4_A          321 MYKGIFKGKDEGGA  334 (338)
T ss_dssp             --------------
T ss_pred             HHHHhhCCCCCCCC
Confidence            99999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.83  E-value=2.5e-09  Score=97.78  Aligned_cols=109  Identities=8%  Similarity=0.012  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~------allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .|++++|..+|+++++..|....      ++.++|.++. ..|++++|+++|++++++.+..      +.++.++|.++.
T Consensus       196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            48999999999999988654332      8889999888 4999999999999999997776      778899998776


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPNS------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPdn------peal~NLA~~L~~~GR~Et~  526 (540)
                       ..|++++|+.+|++|+++.+..      ..++..+|.++..+|++++|
T Consensus       275 -~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          275 -LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence             4799999999999999986643      45889999999999998754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.82  E-value=7.1e-09  Score=95.30  Aligned_cols=98  Identities=17%  Similarity=0.076  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HcCC
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK----DYDRAEECFKRAIQSDPPDAEALSQYADFLWL---VRKD  488 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G----D~deAEe~feRALeLDPndAeAl~NLA~~L~~---~rGD  488 (540)
                      .+++++|..+|++|++.  .++.+++++|.++. . +    |+++|+++|++|++  ++++.++.++|.++..   ..+|
T Consensus        31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d  104 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATD  104 (212)
T ss_dssp             HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCC
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccC
Confidence            38999999999999875  68999999999877 3 6    99999999999954  7899999999987643   1579


Q ss_pred             HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Q 009204          489 LWAAEETYQQAMAAEP--NSSSYASKYASFLWN  519 (540)
Q Consensus       489 ~EEAee~feKALeLDP--dnpeal~NLA~~L~~  519 (540)
                      +++|+++|++|++..|  +++.+++++|.+|..
T Consensus       105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A          105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            9999999999999998  469999999999988

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=9.6e-09  Score=97.83  Aligned_cols=109  Identities=13%  Similarity=0.040  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLL------LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~a------llNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .+++++|..+|++++...+.++..      +.++|.++. ..+++++|+.+|++|+++.+..      ..++.++|.++.
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            489999999999999998887762      334677666 5889999999999999975443      347899998776


Q ss_pred             HHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          484 LVRKDLWAAEETYQQAMAA-------EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeL-------DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                       ..|++++|+.+|++|++.       .+....++.++|.++..+|++++|
T Consensus       167 -~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 3u3w_A          167 -ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             -HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence             479999999999999953       223445789999999999998864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.80  E-value=1.4e-08  Score=83.06  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       456 eAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|+++|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++..+|++++|
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            6899999999999999999999999876 479999999999999999999999999999999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.79  E-value=7.5e-09  Score=101.57  Aligned_cols=109  Identities=17%  Similarity=-0.008  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPN-------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDP------PDAEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~-------Np~allNLA~~L~~~~GD~deAEe~feRALeLDP------ndAeAl~NLA~~  481 (540)
                      ..|++++|..+|++|+...+.       .+.++.++|.++. ..|++++|+++|++|+++.+      ..+.++.++|.+
T Consensus       153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  231 (378)
T 3q15_A          153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS  231 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            348899999999999987443       2457788999888 49999999999999999743      224578889987


Q ss_pred             HHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          482 LWLVRKDLWAAEETYQQAMA-----AEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALe-----LDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.. .|++++|+++|++|++     .+|..+.++.++|.++..+|++++
T Consensus       232 y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  279 (378)
T 3q15_A          232 YDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK  279 (378)
T ss_dssp             HHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence            664 7899999999999999     788888899999999999999764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.78  E-value=9e-08  Score=103.06  Aligned_cols=103  Identities=8%  Similarity=-0.101  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-DLWAAEET  495 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G--D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG-D~EEAee~  495 (540)
                      ++++...|+++++.+|++..+|++.+.++. ..+  ++++|.++++++|++||.+..+|.+.+.++.. .| .+++|+++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            899999999999999999999999999988 599  77999999999999999999999999988765 56 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +.++|+.+|.|..+|.+.+.++..+++.
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            9999999999999999999999987554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.78  E-value=1.2e-08  Score=103.46  Aligned_cols=87  Identities=10%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQ----------------SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAM  500 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALe----------------LDPndAeAl~NLA~~L~~~rGD~EEAee~feKAL  500 (540)
                      +..+.++|..++ ..|++++|+++|++||+                ++|.++.++.++|.+++ ..|++++|+++|++|+
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHH
Confidence            456888999988 49999999999999999                88999999999999876 4799999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          501 AAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       501 eLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++|+++.+++++|.+|..+|++++
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~e  325 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQ  325 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHH
Confidence            9999999999999999999999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.77  E-value=1.8e-09  Score=112.75  Aligned_cols=89  Identities=16%  Similarity=0.038  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      ++.++.++|..+. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.++|.
T Consensus         5 ~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            5 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3455667787777 59999999999999999999999999999998764 799999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009204          516 FLWNTGGEETC  526 (540)
Q Consensus       516 ~L~~~GR~Et~  526 (540)
                      ++..+|++++|
T Consensus        83 ~~~~~g~~~eA   93 (477)
T 1wao_1           83 SNMALGKFRAA   93 (477)
T ss_dssp             HHHHHTCHHHH
T ss_pred             HHHHcCCHHHH
Confidence            99999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.75  E-value=5.1e-08  Score=104.98  Aligned_cols=105  Identities=8%  Similarity=-0.072  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD----------YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK  487 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD----------~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG  487 (540)
                      ..++|..+|.++|+.+|++..+|+..+.++.. .|+          +++|.++++++|+.+|++..+|++.++++. ..+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hcc
Confidence            34788999999999999999999999998884 777          999999999999999999999999999875 467


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCc
Q 009204          488 --DLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG-GEE  524 (540)
Q Consensus       488 --D~EEAee~feKALeLDPdnpeal~NLA~~L~~~G-R~E  524 (540)
                        ++++|++++.+++++||.|..+|.+.+.++...| +++
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~  161 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA  161 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChH
Confidence              6799999999999999999999999999999999 443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.74  E-value=1e-07  Score=95.86  Aligned_cols=103  Identities=11%  Similarity=-0.006  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHhc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFL----HLVT---KDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW  490 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L----~~~~---GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E  490 (540)
                      +++++..++.++|..+|++..+|+..+.++    .. .   ++++++++++.++|+++|.+..+|++.+.++. ..++++
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~  161 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHN  161 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccC
Confidence            677777777777777777777777777666    42 4   56777777777777777777777777776554 355666


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          491 --AAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       491 --EAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                        ++++++.++++.||.|..+|.+.+.++...|+
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              77777777777777777777777777766554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.73  E-value=4.5e-08  Score=81.88  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKD---YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS  507 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD---~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp  507 (540)
                      +|+|+.++..||.+++. .++   .++|..++++||++||+++.++..+|..++. .|+|++|+.+|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            79999999999999874 555   7999999999999999999999999998775 8999999999999999999843

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=1.4e-08  Score=108.07  Aligned_cols=108  Identities=14%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQS-----DPPDA---EALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALeL-----DPndA---eAl~NL  478 (540)
                      .+|+|++|+.+|+++|+.     -|+++.   .+.|+|.+|. .+|++++|+.+|++||++     -|+++   ..++|+
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            569999999999999986     567764   6788999888 599999999999999986     45554   478999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCCCc
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAA-----EPNSSSY---ASKYASFLWNTGGEE  524 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeL-----DPdnpea---l~NLA~~L~~~GR~E  524 (540)
                      |.+++. +|++++|+.+|++|+++     -|++|.+   ..+++.++..+|+++
T Consensus       400 a~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          400 GLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            998764 79999999999999984     6777765   567777777777654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.70  E-value=8.2e-09  Score=95.95  Aligned_cols=70  Identities=13%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          451 TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD----------LWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       451 ~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD----------~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      .+.+++|++.|++|++++|+++++|.++|.++.. .++          +++|+..|++||+++|+++++++++|.+|..+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            6678999999999999999999999999998765 333          56999999999999999999999999999988


Q ss_pred             C
Q 009204          521 G  521 (540)
Q Consensus       521 G  521 (540)
                      |
T Consensus        94 g   94 (158)
T 1zu2_A           94 A   94 (158)
T ss_dssp             H
T ss_pred             c
Confidence            6

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.70  E-value=3.3e-08  Score=95.61  Aligned_cols=108  Identities=18%  Similarity=0.147  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL-----LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA------EALSQYADFLWL  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~-----allNLA~~L~~~~GD~deAEe~feRALeLDPndA------eAl~NLA~~L~~  484 (540)
                      .|++++|..++++++...|.+..     ++.++|.++. ..|++++|+++|++|+++.|...      .++.++|.++. 
T Consensus        27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-  104 (373)
T 1hz4_A           27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-  104 (373)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-
Confidence            48999999999999999876532     6778888888 59999999999999999866543      23678888765 


Q ss_pred             HcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCCcc
Q 009204          485 VRKDLWAAEETYQQAMAAE--------PNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       485 ~rGD~EEAee~feKALeLD--------Pdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ..|++++|+++|++++++.        |....++.++|.+++.+|++++
T Consensus       105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  153 (373)
T 1hz4_A          105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  153 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence            5899999999999999975        4455678899999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.70  E-value=3.2e-08  Score=95.65  Aligned_cols=109  Identities=16%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSD--------PPDAEALSQYADF  481 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np------~allNLA~~L~~~~GD~deAEe~feRALeLD--------PndAeAl~NLA~~  481 (540)
                      .|++++|..+|++++++.|...      .++.++|.++. ..|++++|+++|++++++.        |....++.++|.+
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            4899999999999999865433      23678898888 4999999999999999975        4456678889987


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCccc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEPN-----SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDPd-----npeal~NLA~~L~~~GR~Et~  526 (540)
                      ++. .|++++|+.++++++++.|.     ...++.++|.++...|+++++
T Consensus       145 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          145 LWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            764 79999999999999999875     346788999999999998753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.67  E-value=4.3e-08  Score=99.67  Aligned_cols=90  Identities=14%  Similarity=0.187  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCH
Q 009204          417 MDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLV----TKDYDRAEECFKRAIQSDPPD-AEALSQYADFLWLVRKDL  489 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~----~GD~deAEe~feRALeLDPnd-AeAl~NLA~~L~~~rGD~  489 (540)
                      +...+|...+++||++||+  ++.+|.-+|.+|+..    -|+.++|+++|+|||+++|+. ..++..||.++....||+
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4578999999999999999  777999999987731    399999999999999999985 999999999887656999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 009204          490 WAAEETYQQAMAAEPNS  506 (540)
Q Consensus       490 EEAee~feKALeLDPdn  506 (540)
                      ++|.+++++|++++|..
T Consensus       257 ~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          257 AGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            99999999999998873

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.66  E-value=1.1e-07  Score=93.41  Aligned_cols=123  Identities=15%  Similarity=0.034  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCC------CCHHHHHHHH
Q 009204          371 EELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEP------NNPLLLLNYA  444 (540)
Q Consensus       371 ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP------~Np~allNLA  444 (540)
                      .+...++.+++..++..      ...+.....+...+.+.   ...|++++|..+|++|+++.+      ....++.++|
T Consensus       159 ~A~~~~~~al~~~~~~~------~~~~~~~~~~~~lg~~y---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  229 (378)
T 3q15_A          159 VSMYHILQALDIYQNHP------LYSIRTIQSLFVIAGNY---DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA  229 (378)
T ss_dssp             HHHHHHHHHHHHHHTST------TCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45555666666555432      11223344444433332   245999999999999999733      1245788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 009204          445 QFLHLVTKDYDRAEECFKRAIQ-----SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEP  504 (540)
Q Consensus       445 ~~L~~~~GD~deAEe~feRALe-----LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDP  504 (540)
                      .++. ..|++++|+++|++|++     .+|..+.++.++|.++.. .|++++|++++++|+++.+
T Consensus       230 ~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          230 NSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            9988 49999999999999999     889999999999998764 7999999999999999844

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.65  E-value=2.2e-07  Score=93.43  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC------
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYD--RAEECFKRAIQSDPPDAEALSQYADFLWLVRKD------  488 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~d--eAEe~feRALeLDPndAeAl~NLA~~L~~~rGD------  488 (540)
                      ++++++..++.++++.+|.|..+|...+.++. ..|+++  +++++++++|++||.|..+|++.+.++.. .++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhh
Confidence            67899999999999999999999999999888 499988  99999999999999999999999987654 455      


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      +++++++++++|..+|+|..+|..++.++...|+..
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~  237 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI  237 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999999999854

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.61  E-value=2.3e-08  Score=100.35  Aligned_cols=139  Identities=8%  Similarity=-0.090  Sum_probs=95.5

Q ss_pred             ChHHHHH-HHHHHHHHhhchhhhhh-c---cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcC-CCC-HHHHH
Q 009204          369 NKEELDL-WNSVLDEALRIQEESEY-R---ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEE-PNN-PLLLL  441 (540)
Q Consensus       369 ~~ee~~L-W~~~L~eap~~q~~~~~-e---aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalD-P~N-p~all  441 (540)
                      +.+++.| +-.++.++.+..++... .   ..+|+-...++- +.   ..-..++|++|+.+|++++... |.. ..+++
T Consensus       100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~-a~---l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~  175 (282)
T 4f3v_A          100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMK-AV---VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV  175 (282)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHH-HH---HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHH-HH---HHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence            3456664 66777777776655443 2   224444333322 11   1334588999999998887753 221 34788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSD--PP-DAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLD--Pn-dAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA  514 (540)
                      ++|.++.. .|++++|+.+|++++.-.  |. .+++++++|.++.. .|+.++|..+|+++++.+|+ +.++..+.
T Consensus       176 ~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          176 AHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            88888884 999999999999998654  55 66788888887654 68899999999999999998 77665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.61  E-value=3.1e-07  Score=79.97  Aligned_cols=81  Identities=15%  Similarity=0.045  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWA  491 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EE  491 (540)
                      ..++|..+|++|.+.  .++.+++++|.++..   ..+|+++|.++|++|.+.  +++.++.++|.++...   .+|+++
T Consensus        40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            344455555555543  344555555544431   034555555555555443  4455555555443321   344555


Q ss_pred             HHHHHHHHHHh
Q 009204          492 AEETYQQAMAA  502 (540)
Q Consensus       492 Aee~feKALeL  502 (540)
                      |+++|++|.+.
T Consensus       116 A~~~~~~Aa~~  126 (138)
T 1klx_A          116 AVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            55555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.60  E-value=1.5e-07  Score=98.73  Aligned_cols=96  Identities=10%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             CCCCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCH---HHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQS-----DPPDA---EALSQ  477 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALeL-----DPndA---eAl~N  477 (540)
                      ..+|+|++|+.+|+++|+.     .|+++.   .+.|+|.+|. .+|++++|+.+|++||++     -|+++   ..++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            3568999999999999985     677775   5778999888 599999999999999986     45554   57999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 009204          478 YADFLWLVRKDLWAAEETYQQAMAA-----EPNSSSYAS  511 (540)
Q Consensus       478 LA~~L~~~rGD~EEAee~feKALeL-----DPdnpeal~  511 (540)
                      +|.+++. +|++++|+.+|++|+++     -|++|.+..
T Consensus       388 La~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          388 LGRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            9998764 79999999999999985     688887654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.59  E-value=2.6e-07  Score=95.25  Aligned_cols=107  Identities=8%  Similarity=-0.053  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-CHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-DLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG-D~EEAee  494 (540)
                      +..++|..++.++|.++|++..+|+..+.++.. .| ++++++++++++|..+|++..+|++.+.++....+ +++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            345789999999999999999999999998884 77 69999999999999999999999999998766436 8999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ++.++++.+|.|..+|.+.+.++...|+++
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999888766

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.58  E-value=1.4e-07  Score=77.28  Aligned_cols=89  Identities=7%  Similarity=0.007  Sum_probs=74.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP------DAEALSQYADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeLDPn------dAeAl~NLA~~L  482 (540)
                      ..|++++|..+|+++++..+..      ..++.++|.++. ..|++++|+++|++++++.+.      .+.++.++|.++
T Consensus        61 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence            3489999999999999986543      568889999888 499999999999999987432      256788899877


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 009204          483 WLVRKDLWAAEETYQQAMAAEPN  505 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeLDPd  505 (540)
                      .. .|++++|++++++++++...
T Consensus       140 ~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          140 TA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HH-ccCHHHHHHHHHHHHHHHHH
Confidence            64 78999999999999987654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.56  E-value=9.3e-07  Score=76.93  Aligned_cols=100  Identities=13%  Similarity=0.057  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAAE  493 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEAe  493 (540)
                      .++++|..+|++|.+.....+.    +|.++. ..+..++|.++|++|.+.  +++.+++++|.++...   .+|+++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5789999999999998754444    888777 478899999999999997  7999999999977541   57999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcc
Q 009204          494 ETYQQAMAAEPNSSSYASKYASFLWN----TGGEET  525 (540)
Q Consensus       494 e~feKALeLDPdnpeal~NLA~~L~~----~GR~Et  525 (540)
                      ++|++|.+.  .++.+.+++|.+|..    .+++++
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            999999987  789999999999988    555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.53  E-value=3.1e-07  Score=94.48  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC-----CH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH--LVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK-----DL  489 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~--~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG-----D~  489 (540)
                      +++++|..+|+++.   |.++.+++++|.+++  ...+|+++|+++|++|++.  +++.++.++|.++.  .|     |+
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~--~G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY--EGKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH--HCSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--cCCCCCCCH
Confidence            67888888888887   788888888888744  3578888888888888754  58888888887664  34     88


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          490 WAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      ++|+++|++|.   |+++.+++++|.+|..
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            88888888888   8888888888877765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.52  E-value=1.1e-06  Score=89.75  Aligned_cols=102  Identities=8%  Similarity=-0.116  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD-LWAAEET  495 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G--D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD-~EEAee~  495 (540)
                      ++++..++.++|..+|.+..+|...+.++.. .+  +++++++++.+++++||.|..+|.+.+.++.. .|+ +++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence            7889999999999999999999999998884 77  59999999999999999999999999987654 566 6999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      +.++++.+|.|..+|.+.+.++...+.
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999988743

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.52  E-value=3.3e-07  Score=94.22  Aligned_cols=97  Identities=15%  Similarity=0.051  Sum_probs=82.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---
Q 009204          414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK-----DYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---  485 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G-----D~deAEe~feRALeLDPndAeAl~NLA~~L~~~---  485 (540)
                      ...+++++|..+|++|++.  .++.+++++|.++.  .|     |+++|+++|++|+   |+++.++.++|.++...   
T Consensus       262 ~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~--~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~  334 (452)
T 3e4b_A          262 PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY--EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLG  334 (452)
T ss_dssp             GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH--HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTS
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCC
Confidence            3468999999999999864  58999999998776  55     9999999999999   99999999999876531   


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       486 rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      ..|+++|+.+|++|.+  ++++.+.+++|.+|..
T Consensus       335 ~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          335 KVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             SCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence            2389999999999976  5677889999998864

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=7.6e-07  Score=82.47  Aligned_cols=98  Identities=13%  Similarity=0.061  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK---DYDRAEECFKRAIQSD-P-PDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G---D~deAEe~feRALeLD-P-ndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      +....+++.|.++++.+|.+.++.++||++|.. .+   +.++++.+++..++.+ | ++.+.++++|..++. .|+|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            457788999999999999999999999999884 66   7789999999999999 7 678999999998865 789999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~  516 (540)
                      |.++++++++.+|+|..+..-.-.+
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999886544433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.50  E-value=1.1e-06  Score=73.15  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSD-------PPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLD-------PndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      +.-.+.+|..++. .|+|++|+..|++|++..       +..++++.+||..++. .|++++|+.++++|++++|+++.+
T Consensus         5 a~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence            4455678998885 999999999999999963       3567889999988765 789999999999999999999999


Q ss_pred             HHHHHHHHH
Q 009204          510 ASKYASFLW  518 (540)
Q Consensus       510 l~NLA~~L~  518 (540)
                      +.|++.+-.
T Consensus        83 ~~n~~~~~~   91 (104)
T 2v5f_A           83 NGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HhhHHHHHH
Confidence            888885443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.48  E-value=1.3e-06  Score=90.08  Aligned_cols=103  Identities=9%  Similarity=-0.068  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHH-----
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT-K-DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLW-----  490 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~-G-D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~E-----  490 (540)
                      .++++..++.++|..+|++..+|+..+.++.. . + ++++++++++++|+++|.|..+|.+.+.++.. .+.++     
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~  181 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEA  181 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchh
Confidence            58999999999999999999999999998885 5 7 89999999999999999999999999987654 45566     


Q ss_pred             ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          491 ---AAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       491 ---EAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                         +++++++++++.+|.|..+|.+.+.++...++
T Consensus       182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence               99999999999999999999999999999887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.46  E-value=1.3e-06  Score=89.01  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK---DYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLW  490 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G---D~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~E  490 (540)
                      +++++|..+|++|++.  .++.+++++|.++.. .|   ++++|+++|++|++.  +++.++.++|.++...   .+|++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            6788888888888875  457788888887764 45   788888888888876  6788888888766531   46888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCccc
Q 009204          491 AAEETYQQAMAAEPNSSSYASKYASFLWN----TGGEETC  526 (540)
Q Consensus       491 EAee~feKALeLDPdnpeal~NLA~~L~~----~GR~Et~  526 (540)
                      +|+++|++|++.  +++.++.++|.++..    .+++++|
T Consensus       385 ~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A  422 (490)
T 2xm6_A          385 QAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQA  422 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            888888888875  467888888888877    5555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.45  E-value=2.6e-07  Score=96.48  Aligned_cols=104  Identities=9%  Similarity=-0.109  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQS-----DPPDAE---ALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALeL-----DPndAe---Al~NL  478 (540)
                      .+|+|++|+.+|+++|+.     .|+++.   .+.|+|.+|. .+|++++|+.+++++|++     -|+++.   .++|+
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            358999999999999985     577764   6788898888 599999999999999985     455554   68899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHc
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAA-----EPNSSSY---ASKYASFLWNT  520 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeL-----DPdnpea---l~NLA~~L~~~  520 (540)
                      |.+++. +|++++|+.+|++|+++     -|++|.+   +.+++.+...+
T Consensus       378 a~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          378 GKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            998765 79999999999999985     6777765   45566665543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.45  E-value=1.6e-06  Score=88.65  Aligned_cols=102  Identities=8%  Similarity=-0.064  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcC--
Q 009204          420 FRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKD----------YDRAEECFKRAIQSDPPDAEALSQYADFLWLVRK--  487 (540)
Q Consensus       420 eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD----------~deAEe~feRALeLDPndAeAl~NLA~~L~~~rG--  487 (540)
                      ++|..++.++|..+|++..+|+..+.++.. .++          +++++.++.++|..+|.+..+|++.+.++.. .+  
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~~~  124 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP  124 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CSSC
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCcc
Confidence            589999999999999999999999988763 554          7899999999999999999999999998754 55  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +++++++++.++++.||.|..+|.+.+.++...|+.
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~  160 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  160 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence            589999999999999999999999999999999984

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.44  E-value=2.3e-06  Score=87.31  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=69.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV---TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~---~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~  489 (540)
                      .+++++|..+|++|++.  .++.+++++|.++...   .+++++|+++|++|++.  +++.++.++|.++...   .+|+
T Consensus        92 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            46777777777777764  4677777777766521   56777788888777664  5777777777765431   4577


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          490 WAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       490 EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      ++|+++|++|++.  +++.++.++|.++..
T Consensus       168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            7888888877765  567777777777776

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.40  E-value=4.7e-07  Score=73.77  Aligned_cols=59  Identities=10%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          467 SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       467 LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .+|+++.++.++|.+++. .|++++|+++|++|++++|+++.++.++|.++..+|++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            489999999999998764 79999999999999999999999999999999999998753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.37  E-value=2.5e-06  Score=89.01  Aligned_cols=120  Identities=11%  Similarity=-0.057  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcC--C---HHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHc
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL--VTK--D---YDRAEECFK--RAIQSDPPDAEALSQYADFLWLVR  486 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~--~~G--D---~deAEe~fe--RALeLDPndAeAl~NLA~~L~~~r  486 (540)
                      ...+.+|..+|++|++++|+++.++..++.++..  ..+  .   .......++  .++..+|.++.++..++..++ ..
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l-~~  290 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL-VK  290 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH-hC
Confidence            3567899999999999999999988877665421  111  1   111111222  233567888888888776554 35


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------ccccCCCCccccC
Q 009204          487 KDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE-------TCFPLSSSQDDYN  537 (540)
Q Consensus       487 GD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E-------t~~pl~~~~~~~~  537 (540)
                      |++++|+.++++|++++|+ ..++.-+|.++...|+.+       +|+-++|..++|.
T Consensus       291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            8888888888888888864 667777888888888854       5677777766653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.29  E-value=2.3e-06  Score=85.90  Aligned_cols=108  Identities=11%  Similarity=-0.079  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHcCCHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD--AEALSQYADFLWLVRKDLWAAE  493 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd--AeAl~NLA~~L~~~rGD~EEAe  493 (540)
                      .|+|++|.++|+.++..+|++. +++.+|.+++. .+++++|+.+|+++++..++.  ..+++++|.++. ..|++++|+
T Consensus       115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl  191 (282)
T 4f3v_A          115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAE  191 (282)
T ss_dssp             HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHH
Confidence            4999999999999999999998 99999998884 999999999999998864222  458999998765 589999999


Q ss_pred             HHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCCccc
Q 009204          494 ETYQQAMAAE--PN-SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       494 e~feKALeLD--Pd-npeal~NLA~~L~~~GR~Et~  526 (540)
                      .+|++++...  |. .+++++++|.+|..+|+.++|
T Consensus       192 ~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999654  66 778999999999999998753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.13  E-value=6e-06  Score=84.10  Aligned_cols=93  Identities=11%  Similarity=-0.011  Sum_probs=75.4

Q ss_pred             cCCCCHHHHHHHHHHHHHh----cC------CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH----cCCHHHHHHH
Q 009204          432 EEPNNPLLLLNYAQFLHLV----TK------DYDRAEECFKRAIQSDPP--DAEALSQYADFLWLV----RKDLWAAEET  495 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~----~G------D~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~----rGD~EEAee~  495 (540)
                      .+|+++++++-.|......    .|      ...+|+..++|||++||+  +..+|..+|.+|...    .|+.++|+++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            3677888777766654311    23      367899999999999999  677999999876542    4999999999


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHc-CCCc
Q 009204          496 YQQAMAAEPNS-SSYASKYASFLWNT-GGEE  524 (540)
Q Consensus       496 feKALeLDPdn-peal~NLA~~L~~~-GR~E  524 (540)
                      |+||++++|+. ...++.||.+|... |+++
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            99999999975 99999999999885 7765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.12  E-value=9e-06  Score=67.67  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEE-------PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalD-------P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      +.++|.+|..+|++|++..       +..+.++.++|.+++ ..|++++|..++++|++++|++..++.|++.
T Consensus        17 ~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            3489999999999999963       356789999999999 5999999999999999999999999999884

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.12  E-value=3.5e-06  Score=89.82  Aligned_cols=103  Identities=10%  Similarity=-0.018  Sum_probs=81.4

Q ss_pred             CHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009204          396 DHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAE-----EPNNPL---LLLNYAQFLHLVTKDYDRAEECFKRAIQS  467 (540)
Q Consensus       396 D~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALal-----DP~Np~---allNLA~~L~~~~GD~deAEe~feRALeL  467 (540)
                      .|+++..+.+.+.+.   ..+|+|++|+.+|+++|+.     -|++|.   .++|+|.+|. .+|++++|+.+|++|+++
T Consensus       347 Hp~~a~~~~nLa~~y---~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          347 NLYVLRLLSIASEVL---SYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             SHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Confidence            567777776665553   3569999999999999986     566665   6889999988 499999999999999985


Q ss_pred             -----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204          468 -----DPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMAAE  503 (540)
Q Consensus       468 -----DPndAe---Al~NLA~~L~~~rGD~EEAee~feKALeLD  503 (540)
                           -|+++.   .+.+++..+.+ .+.+++|+..|++|.+..
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence                 577765   45566666544 567999999999998755

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=1.3e-05  Score=78.50  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-----
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL-----------------LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE-----  473 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~-----------------allNLA~~L~~~~GD~deAEe~feRALeLDPndAe-----  473 (540)
                      .|+|++|+..|+++++.+|....                 ++.++|.+|. ..|++++|.++|++++.+.+....     
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            38899999999999999887643                 5788999888 499999999999999987665433     


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCCccc
Q 009204          474 -ALSQYADFLWLVRKDLWAAEETYQQAMAAEP------NSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       474 -Al~NLA~~L~~~rGD~EEAee~feKALeLDP------dnpeal~NLA~~L~~~GR~Et~  526 (540)
                       ++.+++.++ ...|++++|+.++++++...+      ..+.++.++|.++...|++++|
T Consensus        96 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           96 VLKTLIEKFE-QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHHHHHHHC-SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence             344455543 346889999999999988633      3356788999999999997653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.90  E-value=1.2e-05  Score=67.04  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA  472 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndA  472 (540)
                      ...++|..++++||++||+++.++..+|..++. .|+|++|+.+|+++++.+|.++
T Consensus        23 ~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           23 AMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            447999999999999999999999999999995 9999999999999999999954

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.85  E-value=1.2e-05  Score=84.45  Aligned_cols=78  Identities=10%  Similarity=-0.057  Sum_probs=65.0

Q ss_pred             hcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 009204          450 VTKDYDRAEECFKRAIQS-----DPPDAE---ALSQYADFLWLVRKDLWAAEETYQQAMAA-----EPNSSS---YASKY  513 (540)
Q Consensus       450 ~~GD~deAEe~feRALeL-----DPndAe---Al~NLA~~L~~~rGD~EEAee~feKALeL-----DPdnpe---al~NL  513 (540)
                      ..|+|++|+.+|+++|++     .|+++.   .++|+|.+|.. +|+|++|+.++++++++     -|++|+   .+.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            478999999999999994     566654   68899988764 79999999999999985     456665   58999


Q ss_pred             HHHHHHcCCCccccc
Q 009204          514 ASFLWNTGGEETCFP  528 (540)
Q Consensus       514 A~~L~~~GR~Et~~p  528 (540)
                      |.+|+.+|++++|-+
T Consensus       389 a~~~~~qg~~~eA~~  403 (433)
T 3qww_A          389 GRLYMGLENKAAGEK  403 (433)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHhccCHHHHHH
Confidence            999999999987543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.80  E-value=6e-05  Score=83.51  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAE-ECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQ  497 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAE-e~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~fe  497 (540)
                      .++....|++||...|.++.+|..||.++.. .|+.++|. +.|++|+...|.+...+..|+.+.. ..|++++|...|+
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~-~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee-~~~~~e~aR~iye  402 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGE-KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE-LNTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence            3566789999999999999999999999884 89999996 9999999999999999999998764 5789999999999


Q ss_pred             HHHHh-----------CCC-----------CHHHHHHHHHHHHHcCCCc
Q 009204          498 QAMAA-----------EPN-----------SSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       498 KALeL-----------DPd-----------npeal~NLA~~L~~~GR~E  524 (540)
                      +++..           .|.           .+.+|..|+.+..+.|+.+
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~  451 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA  451 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence            99985           253           4568999999998888765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=7.1e-05  Score=73.19  Aligned_cols=111  Identities=8%  Similarity=-0.008  Sum_probs=88.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHH
Q 009204          414 DDYMDYFRTDLLYQMGVAEE------PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS------DPPDAEALSQYADF  481 (540)
Q Consensus       414 d~~Gd~eeAe~lYqkALalD------P~Np~allNLA~~L~~~~GD~deAEe~feRALeL------DPndAeAl~NLA~~  481 (540)
                      ...|++++|..+|++++...      +....++.++|.++.. .|++++|..++++++..      .+...+++.+.+.+
T Consensus       106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
T 4b4t_Q          106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV  184 (434)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            34589999999999998863      3346788999999885 99999999999999986      45557789999987


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCCccc
Q 009204          482 LWLVRKDLWAAEETYQQAMAAEP---NS----SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       482 L~~~rGD~EEAee~feKALeLDP---dn----peal~NLA~~L~~~GR~Et~  526 (540)
                      +. ..|++++|..+|++|+...+   +.    ..++..+|.++...|+++++
T Consensus       185 ~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          185 YH-KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            76 47999999999999998743   33    24567777777788887653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.71  E-value=0.0001  Score=76.88  Aligned_cols=101  Identities=21%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             HHHHHHcCCCCHHHHHHH--HHHHHH--hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--cC-----CHHHHHH
Q 009204          426 YQMGVAEEPNNPLLLLNY--AQFLHL--VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV--RK-----DLWAAEE  494 (540)
Q Consensus       426 YqkALalDP~Np~allNL--A~~L~~--~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~--rG-----D~EEAee  494 (540)
                      .+++...-|.++.+|-.|  |..+..  ...++.+|..+|++||++||+++.++..++..+...  .+     ..+....
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            344556677777665443  222221  134568999999999999999999999877765321  11     1111111


Q ss_pred             HHH--HHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQ--QAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~fe--KALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      .++  .++.++|.++.++..+|..++..|+++++
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A  296 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES  296 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence            222  23356899999999999999988998753

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.67  E-value=0.00011  Score=74.82  Aligned_cols=107  Identities=11%  Similarity=0.054  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHH--HHHHHH-c
Q 009204          416 YMDYFRTDLLYQMGVAEEP--NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP----DAEALSQYA--DFLWLV-R  486 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP--~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPn----dAeAl~NLA--~~L~~~-r  486 (540)
                      .|++++|.+.+.++|..+|  ++.+++.-.++++. .+|+.++|.+.+++..+++|+    +-.++.+++  ++.... .
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            4999999999999999997  88899988899888 599999999999999999994    233344454  333322 2


Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCccc
Q 009204          487 KDLWAAEETYQQAMAAEPN--SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       487 GD~EEAee~feKALeLDPd--npeal~NLA~~L~~~GR~Et~  526 (540)
                      +++.+|..+|+++....|+  .+..+++   ++.++|++++|
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence            3899999999999888887  4556666   78889998753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.64  E-value=0.00021  Score=66.20  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             CChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcC-C-CCHHHHHHHHH
Q 009204          368 MNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEE-P-NNPLLLLNYAQ  445 (540)
Q Consensus       368 ~~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalD-P-~Np~allNLA~  445 (540)
                      .++++..-.++...+.-+..      ..+.++.-++.   .+-+...+..+.++++.+++..++.+ | ++.++++++|.
T Consensus         9 l~~~~l~~~~~~y~~e~~~~------~~~~~~~F~ya---~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAG------SVSKSTQFEYA---WCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   79 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTT------CCCHHHHHHHH---HHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccC------CCcHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            45566666665555543211      24556655552   22233444567889999999999999 8 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          446 FLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY  478 (540)
Q Consensus       446 ~L~~~~GD~deAEe~feRALeLDPndAeAl~NL  478 (540)
                      .++ +.|+|++|.++++++|+++|+|..+..-.
T Consensus        80 ~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           80 GNY-RLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            998 59999999999999999999999887643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.63  E-value=0.00011  Score=81.32  Aligned_cols=109  Identities=12%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             CCCCHHHHHHHHHHHHHc-----------CCC-----------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC
Q 009204          415 DYMDYFRTDLLYQMGVAE-----------EPN-----------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS-DPPD  471 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal-----------DP~-----------Np~allNLA~~L~~~~GD~deAEe~feRALeL-DPnd  471 (540)
                      ..|++++|...|++++..           .|.           .+.+|..|+.+..+ .|+.++|...|.+|++. .+..
T Consensus       390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~  468 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVT  468 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSC
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCC
Confidence            348899999999999975           253           45688999988774 88999999999999998 5555


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          472 AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       472 AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ..+|...|.+.+...++++.|...|+++++..|+++..|..|+.++...|+.+
T Consensus       469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~  521 (679)
T 4e6h_A          469 PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES  521 (679)
T ss_dssp             THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence            67777777665544466899999999999999999999999999999888864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.61  E-value=7.3e-05  Score=78.05  Aligned_cols=77  Identities=12%  Similarity=-0.043  Sum_probs=64.6

Q ss_pred             hcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 009204          450 VTKDYDRAEECFKRAIQS-----DPPDA---EALSQYADFLWLVRKDLWAAEETYQQAMAA-----EPNSSS---YASKY  513 (540)
Q Consensus       450 ~~GD~deAEe~feRALeL-----DPndA---eAl~NLA~~L~~~rGD~EEAee~feKALeL-----DPdnpe---al~NL  513 (540)
                      .+|++++|+++|+++|++     .|+++   ..+.++|.++.. +|++++|+.++++++++     -|++|.   .+.|+
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            489999999999999985     56665   578889988764 79999999999999985     456665   58999


Q ss_pred             HHHHHHcCCCcccc
Q 009204          514 ASFLWNTGGEETCF  527 (540)
Q Consensus       514 A~~L~~~GR~Et~~  527 (540)
                      |.+|+.+|++++|-
T Consensus       378 a~~~~~~g~~~eA~  391 (429)
T 3qwp_A          378 GKLQLHQGMFPQAM  391 (429)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHhcCCHHHHH
Confidence            99999999998654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.55  E-value=0.00023  Score=72.34  Aligned_cols=143  Identities=13%  Similarity=0.097  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhchhhhhh-c-cC--CH--HHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCC----CHHHHH
Q 009204          372 ELDLWNSVLDEALRIQEESEY-R-IL--DH--ETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPN----NPLLLL  441 (540)
Q Consensus       372 e~~LW~~~L~eap~~q~~~~~-e-aL--D~--e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~----Np~all  441 (540)
                      ..-+-..++....+..+++.. . .+  ++  +.+..+...+...+   ..|+.+.|.+.+++..+.+|+    +-.++.
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L---~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~  178 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL---LNNNVSTASTIFDNYTNAIEDTVSGDNEMIL  178 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence            333444555555555555444 1 22  21  33343333333333   348999999999999999993    223344


Q ss_pred             HHHHH--HHHhcC--CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC
Q 009204          442 NYAQF--LHLVTK--DYDRAEECFKRAIQSDPP--DAEALSQYADFLWLVRKDLWAAEETYQQAMAA----------EPN  505 (540)
Q Consensus       442 NLA~~--L~~~~G--D~deAEe~feRALeLDPn--dAeAl~NLA~~L~~~rGD~EEAee~feKALeL----------DPd  505 (540)
                      +++..  .. ..|  ++++|..+|+++.+..|+  ....+.+   + +..+|++++|++.+++++++          +|+
T Consensus       179 ~Laea~v~l-~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~-~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          179 NLAESYIKF-ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---L-HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             HHHHHHHHH-HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---H-HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             HHHHHHHHH-HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---H-HHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            45433  33 245  999999999999888786  3455555   3 34579999999999988877          599


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 009204          506 SSSYASKYASFLWNTGG  522 (540)
Q Consensus       506 npeal~NLA~~L~~~GR  522 (540)
                      +++++.|+..+...+|+
T Consensus       254 ~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          254 KPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCh
Confidence            99999999999999997

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.52  E-value=0.00054  Score=61.71  Aligned_cols=92  Identities=13%  Similarity=0.068  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDY---DRAEECFKRAIQSD-P-PDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~---deAEe~feRALeLD-P-ndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      ....++..|.+++..++....+.++||+.|.. .++.   .+++.+++..+..+ | ..-+.++.+|..++. .|+|++|
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            45677889999999898999999999998873 5544   45999999999987 5 566788889988775 7899999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q 009204          493 EETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~  511 (540)
                      .++.+..++.+|+|..+..
T Consensus        94 ~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHH
Confidence            9999999999999988754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.39  E-value=0.00042  Score=82.98  Aligned_cols=85  Identities=13%  Similarity=0.001  Sum_probs=67.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009204          433 EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK  512 (540)
Q Consensus       433 DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~N  512 (540)
                      ..+++.+|++||.++. ..|++++|+.+|.+|     +|+.+|.+.+.++. ..|++++|+++|+.|++.+++. .+-..
T Consensus      1101 rvn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~~e~-~Idt~ 1172 (1630)
T 1xi4_A         1101 RCNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARES-YVETE 1172 (1630)
T ss_pred             hcCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcccc-cccHH
Confidence            3678899999999888 599999999999887     88999999998764 5799999999999999888542 22234


Q ss_pred             HHHHHHHcCCCcc
Q 009204          513 YASFLWNTGGEET  525 (540)
Q Consensus       513 LA~~L~~~GR~Et  525 (540)
                      +|..|.+++++++
T Consensus      1173 LafaYAKl~rlee 1185 (1630)
T 1xi4_A         1173 LIFALAKTNRLAE 1185 (1630)
T ss_pred             HHHHHHhhcCHHH
Confidence            6666666666653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.34  E-value=0.0013  Score=78.96  Aligned_cols=95  Identities=16%  Similarity=0.095  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------------
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-----------------------  471 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-----------------------  471 (540)
                      +.|++++|...|.+|     +|+..|.+.|.++. ..|++++|.++|+.|++.+++.                       
T Consensus      1117 ~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1117 QKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             hCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH
Confidence            458999999999887     88999999999888 4999999999999988776442                       


Q ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          472 ----AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       472 ----AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                          ...+.+.|..+. ..|+|++|..+|.+|        ..|..+|..|.++|+++
T Consensus      1191 ~~~n~ad~~~iGd~le-~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A         1191 NGPNNAHIQQVGDRCY-DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred             hCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHH
Confidence                122334554443 356777777777775        35667777777777765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.28  E-value=0.0015  Score=68.77  Aligned_cols=107  Identities=12%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH----------------------------------------HHHhcCCHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQF----------------------------------------LHLVTKDYD  455 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~----------------------------------------L~~~~GD~d  455 (540)
                      .|+.++|...|++|+.. |.+..++..|+.+                                        +.+ .++.+
T Consensus       226 ~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~  303 (493)
T 2uy1_A          226 IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-KRGLE  303 (493)
T ss_dssp             TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH-HHCHH
T ss_pred             cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH-cCCHH
Confidence            36778888888888888 8776655555443                                        332 66789


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          456 RAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       456 eAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +|...|++| ...+....++..+|.+.+...++.+.|...|+++++.-|+++..+..|+.++...|+.+.
T Consensus       304 ~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~  372 (493)
T 2uy1_A          304 LFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN  372 (493)
T ss_dssp             HHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999 543446677877787766656689999999999999999999999999998888887653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.18  E-value=0.0032  Score=58.98  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          420 FRTDLLYQMGVAEEPN--------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       420 eeAe~lYqkALalDP~--------Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      ++-...|++|++.-|-        ...+|..||.+ . ..+|.++|.+.|+.++.++..++.+|..+|.|-.. +|+..+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHH
Confidence            6778899999998664        44578889976 4 37999999999999999999999999999998765 789999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          492 AEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       492 Aee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |...+.+|+.+.|...+.+ ..|.--.+.|...
T Consensus       113 ARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~~  144 (161)
T 4h7y_A          113 SKQLLQKAVERGAVPLEML-EIALRNLNLQKKQ  144 (161)
T ss_dssp             HHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCSC
T ss_pred             HHHHHHHHhccCCCcHHHH-HHHHHhhhcCCCe
Confidence            9999999999999987754 3455455666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.08  E-value=0.003  Score=66.60  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF-----------------  481 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~-----------------  481 (540)
                      .+++...|+++|...|..+.+|..|+.++. ..|+.++|...|++|+.. |.+...+..|+.+                 
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            456788999999999999999999999988 499999999999999999 9987666655543                 


Q ss_pred             -----------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          482 -----------------------LWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       482 -----------------------L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                                             +.. .++.++|...|++| ...+.....|...|.+-+..++
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence                                   111 34588888899999 4333456677777777666664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.95  E-value=0.0015  Score=61.19  Aligned_cols=92  Identities=21%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             HcCCCCHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          431 AEEPNNPLLLLNYAQFLHLVTKDY------DRAEECFKRAIQSDPPD--------AEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       431 alDP~Np~allNLA~~L~~~~GD~------deAEe~feRALeLDPnd--------AeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      -..|+|++.|.+|...+. ..|+.      ++-.+.|+||+..-|..        ...|.+||.+. . .+|.++|.+.|
T Consensus         7 ~~~p~~yd~W~~yl~llE-~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-e-i~D~d~aR~vy   83 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLE-KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-A-IQEPDDARDYF   83 (161)
T ss_dssp             ---CCSHHHHHHHHHHHH-HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-H-HHCGGGCHHHH
T ss_pred             eeCCCCHHHHHHHHHHHH-HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-H-hcCHHHHHHHH
Confidence            458999999999999888 47998      99999999999987763        55788888653 3 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.|+.+....+.+|..+|.|-.++|+.+.
T Consensus        84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~k  112 (161)
T 4h7y_A           84 QMARANCKKFAFVHISFAQFELSQGNVKK  112 (161)
T ss_dssp             HHHHHHCTTBHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHcccHHH
Confidence            99999999999999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.81  E-value=0.0024  Score=68.13  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|+|++|.+.|++|     +++.+|.....+|.. .|+++.|..+... |..+|++..   .+.. ++...|++++|+.+
T Consensus       161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~-~~ef~lA~~~~l~-L~~~ad~l~---~lv~-~Yek~G~~eEai~l  229 (449)
T 1b89_A          161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVD-GKEFRLAQMCGLH-IVVHADELE---ELIN-YYQDRGYFEELITM  229 (449)
T ss_dssp             TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH-TTCHHHHHHTTTT-TTTCHHHHH---HHHH-HHHHTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHc-----CCchhHHHHHHHHHH-cCcHHHHHHHHHH-HHhCHhhHH---HHHH-HHHHCCCHHHHHHH
Confidence            37788888888887     467777777777774 8888888777775 445555433   3444 34668999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      +++++.+++.+...+..+|.++..-
T Consensus       230 Le~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          230 LEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.74  E-value=0.00022  Score=76.07  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=9.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+..|.++     .|+..+...+..+. ..|++++|+.+++.+++..++ +.+...++..+. ..|++++++++
T Consensus        45 ~g~~~eAIdsfika-----~D~~~y~~V~~~ae-~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~-Klg~l~e~e~f  116 (449)
T 1b89_A           45 KGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARKKARE-SYVETELIFALA-KTNRLAELEEF  116 (449)
T ss_dssp             ------------------------------------------------------------------------CHHHHTTT
T ss_pred             cCCHHHHHHHHHcC-----CCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH-HhCCHHHHHHH
Confidence            36667777777553     34556666666655 367777777777777664333 555555555433 35667776666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++     .|+. .+|.++|..+...|++++
T Consensus       117 ~~-----~pn~-~a~~~IGd~~~~~g~yee  140 (449)
T 1b89_A          117 IN-----GPNN-AHIQQVGDRCYDEKMYDA  140 (449)
T ss_dssp             TT-----CC-----------------CTTT
T ss_pred             Hc-----CCcH-HHHHHHHHHHHHcCCHHH
Confidence            64     2433 466777777777777665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.16  E-value=0.042  Score=55.36  Aligned_cols=63  Identities=19%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY  478 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL  478 (540)
                      +.|..++|+...+..|+.+|.|+.....|.++|+ ..|++++|.+.++.+.+++|+....-..|
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            3489999999999999999999999999999999 59999999999999999999997654444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.97  E-value=0.024  Score=61.03  Aligned_cols=64  Identities=14%  Similarity=0.040  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF  481 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~  481 (540)
                      ..++.|..+|++|+.++|+++..|+.+|.+.. ..|+.-+|.-+|-|+|.....++.+..|+..+
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            34555555555555555555555555555444 25555555555555555555555555555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.63  E-value=0.045  Score=50.49  Aligned_cols=92  Identities=11%  Similarity=-0.064  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV--TKDYDRAEECFKRAIQSDPP-DAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~--~GD~deAEe~feRALeLDPn-dAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +....++.|.+-+. +.-.+.+.++||+.|...  ..+..+++.+++..+..+|. .-+-++.+|..++. .|+|++|.+
T Consensus        21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~   98 (144)
T 1y8m_A           21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKR   98 (144)
T ss_dssp             HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHH
Confidence            34555556655422 345789999999988742  23456899999999999885 45567777877764 789999999


Q ss_pred             HHHHHHHhCCCCHHHHH
Q 009204          495 TYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       495 ~feKALeLDPdnpeal~  511 (540)
                      +.+..++.+|+|..+..
T Consensus        99 y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           99 YVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHhcCCCcHHHHH
Confidence            99999999999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.53  E-value=0.035  Score=52.32  Aligned_cols=99  Identities=20%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--------------
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPL---------LLLNYAQFLHLVTKDYDRAEECFKRAIQSD---P--------------  469 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~---------allNLA~~L~~~~GD~deAEe~feRALeLD---P--------------  469 (540)
                      .+.|+.|+..+..++....++++         ++..+|..++. +|+|.+|+.+|++||++.   +              
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss  111 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS  111 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence            47899999999987776544443         77889999994 999999999999998741   1              


Q ss_pred             --------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009204          470 --------PDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       470 --------ndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L  517 (540)
                              .+.+..+..|..+. ..+++++|+..++. |...-..+.+-..+|.+|
T Consensus       112 ~p~s~~~~~e~Elkykia~C~~-~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          112 TPQSQCLPSEIEVKYKLAECYT-VLKQDKDAIAILDG-IPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----CCCCHHHHHHHHHHHHH-HTTCHHHHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred             CcccccccchHHHHHHHHHHHH-HHCCHHHHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence                    11256677776554 46778888887653 222334455555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.49  E-value=0.052  Score=48.80  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          413 PDDYMDYFRTDLLYQMGVAEE-P-NNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY  478 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalD-P-~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL  478 (540)
                      .....+..+++.+++..++.+ | ++-+.++.+|..++ +.|+|++|.++.+..|+++|+|..+..-.
T Consensus        48 S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           48 TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            444566778999999999987 6 56688999999999 59999999999999999999999987533

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.47  E-value=0.058  Score=49.23  Aligned_cols=94  Identities=12%  Similarity=-0.067  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVT--KDYDRAEECFKRAIQSDPP-DAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~--GD~deAEe~feRALeLDPn-dAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +....++.|++=+.-.| .+.+.++||+.|....  .+..+++.+++..++.+|. .-+-++.+|..++. .|+|++|.+
T Consensus        22 eL~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~   99 (134)
T 3o48_A           22 QLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKR   99 (134)
T ss_dssp             HHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHH
Confidence            44555666665443234 5789999999886422  2456799999999998884 46677888887775 689999999


Q ss_pred             HHHHHHHhCCCCHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKY  513 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NL  513 (540)
                      +.++.++.+|+|..+..=.
T Consensus       100 y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A          100 YVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHhhCCCCHHHHHHH
Confidence            9999999999998875433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.19  E-value=0.38  Score=50.92  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCHHH
Q 009204          416 YMDYFRTDLLYQMGVAE--EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQS--DPPDAEALSQYADFLWLVRKDLWA  491 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal--DP~Np~allNLA~~L~~~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L~~~rGD~EE  491 (540)
                      .++.++|..+|++..+.  .| |...|..+-..|. ..|+.++|+++|++..+.  .| +...|+.+-..+. ..|+.++
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~-~~g~~~~  158 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFC-RKGDADK  158 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HTTCHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHH-HCCCHHH
Confidence            45689999999988775  45 6778888888888 599999999999998875  45 5556666655554 4799999


Q ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCcccc
Q 009204          492 AEETYQQAMAA--EPNSSSYASKYASFLWNTGGEETCF  527 (540)
Q Consensus       492 Aee~feKALeL--DPdnpeal~NLA~~L~~~GR~Et~~  527 (540)
                      |.+.|++..+.  .| +...+..+-.++.+.|+.++++
T Consensus       159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~  195 (501)
T 4g26_A          159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVY  195 (501)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHH
Confidence            99999999885  34 4567788888999999987654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.86  E-value=0.13  Score=48.52  Aligned_cols=81  Identities=14%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----
Q 009204          444 AQFLHLVTKDYDRAEECFKRAIQSDPPDAE---------ALSQYADFLWLVRKDLWAAEETYQQAMAAE---PNS-----  506 (540)
Q Consensus       444 A~~L~~~~GD~deAEe~feRALeLDPndAe---------Al~NLA~~L~~~rGD~EEAee~feKALeLD---Pdn-----  506 (540)
                      ...++. .|.|+-|+-....++.+..++++         ++..+|..++. .++|.+|+.+|++|+++.   +.+     
T Consensus        27 ik~L~d-~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           27 VRDMAA-AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHH-hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            344664 89999999999998887654444         77889998886 688999999999997741   211     


Q ss_pred             -----------------HHHHHHHHHHHHHcCCCccc
Q 009204          507 -----------------SSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       507 -----------------peal~NLA~~L~~~GR~Et~  526 (540)
                                       .+..+..|.++..+|+.++|
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence                             26889999999999998753

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.74  E-value=0.15  Score=54.94  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      .+..+|.+.. +...++.|..+|++|+.++|++...++.+|.+. ...|+.-+|+-+|-|++......+.+..|+..++-
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla-~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA-SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH-HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH-hcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            6678899766 589999999999999999999999999999865 45789999999999999998889999999999886


Q ss_pred             Hc
Q 009204          519 NT  520 (540)
Q Consensus       519 ~~  520 (540)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.71  E-value=0.22  Score=56.30  Aligned_cols=105  Identities=15%  Similarity=0.029  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQF--LHLVTKDYDRAEECFKRAIQ--------SDPPDA----------EALSQY  478 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~--L~~~~GD~deAEe~feRALe--------LDPndA----------eAl~NL  478 (540)
                      ++.|..++++..+.+|.+...+.. +.+  +.....+--+|.....++|+        +.+.+.          ..+.--
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~-~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKT-AMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            578999999999999977543322 221  11112234467777877774        234443          234444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          479 ADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       479 A~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +.||.. +|+++-|+++-++|+...|..-..|+.||.+|..+|++|.
T Consensus       344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~  389 (754)
T 4gns_B          344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEK  389 (754)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHH
Confidence            666654 8999999999999999999999999999999999999883

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.58  E-value=0.19  Score=46.36  Aligned_cols=101  Identities=8%  Similarity=-0.022  Sum_probs=73.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Q 009204          366 FPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPN-NPLLLLNYA  444 (540)
Q Consensus       366 ~~~~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~-Np~allNLA  444 (540)
                      ..++.++....++-..+-..       ....+++.-++.   .+-+......+..+++.+++..+..+|. .-+.++.+|
T Consensus        15 ~~l~~eeL~~lr~qY~~E~~-------~~vs~~t~F~YA---w~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLA   84 (144)
T 1y8m_A           15 EPLYPQQLEILRQQVVSEGG-------PTATIQSRFNYA---WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLT   84 (144)
T ss_dssp             CCCCHHHHHHHHHHHHHTTS-------TTSCHHHHHHHH---HHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcc-------CCCcHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence            44677888877766554211       134445544441   2222344456778999999999999995 457888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 009204          445 QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQ  477 (540)
Q Consensus       445 ~~L~~~~GD~deAEe~feRALeLDPndAeAl~N  477 (540)
                      ..++ +.|+|++|.++.+..|+++|+|..+..-
T Consensus        85 vg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           85 IGCY-KLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             HHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            9889 6999999999999999999999988653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.57  E-value=0.11  Score=47.49  Aligned_cols=102  Identities=8%  Similarity=-0.038  Sum_probs=73.8

Q ss_pred             CCCChHHHHHHHHHHHHHhhchhhhhhccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCC-CHHHHHHHH
Q 009204          366 FPMNKEELDLWNSVLDEALRIQEESEYRILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPN-NPLLLLNYA  444 (540)
Q Consensus       366 ~~~~~ee~~LW~~~L~eap~~q~~~~~eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~-Np~allNLA  444 (540)
                      ...+.+++...+....+--       ...+.+++.-.+.   .+-+...+..+..+++.+++..++.+|. .-+.++.+|
T Consensus        16 ~~~~~eeL~~l~~qy~~E~-------~~~vs~qt~F~yA---w~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLA   85 (134)
T 3o48_A           16 EPLYPQQLEILRQQVVSEG-------GPTATIQSRFNYA---WGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLT   85 (134)
T ss_dssp             CCCCHHHHHHHHHHHHHTT-------GGGSCHHHHHHHH---HHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh-------CCCCChhhHHHHH---HHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence            4567788887776654321       1234445544442   1222244456778999999999999995 467888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          445 QFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY  478 (540)
Q Consensus       445 ~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL  478 (540)
                      ..++ +.|+|++|.++.++.|+++|+|..|..-.
T Consensus        86 vg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           86 IGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            9889 59999999999999999999999987533

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.33  E-value=0.77  Score=48.68  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HHcCCCCHHHHHHHHH--------
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA--------IQSDPPDAEALSQYAD--------  480 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRA--------LeLDPndAeAl~NLA~--------  480 (540)
                      |++++|.++.     ..-+++..|.++|..+. ..++++.|+++|.++        |....++.+.+..++.        
T Consensus       666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~  739 (814)
T 3mkq_A          666 GQLTLARDLL-----TDESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKF  739 (814)
T ss_dssp             TCHHHHHHHH-----TTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHH-----HhhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCch
Confidence            5666666553     34567899999999888 599999999999986        2222444444333332        


Q ss_pred             ----HHHHHcCCHHHHHHHHHH------HHHh----CCCC---HHHHHHHHHHHHHcCCCcc
Q 009204          481 ----FLWLVRKDLWAAEETYQQ------AMAA----EPNS---SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       481 ----~L~~~rGD~EEAee~feK------ALeL----DPdn---peal~NLA~~L~~~GR~Et  525 (540)
                          .++...|++++|+++|.+      |+.+    .|..   +.+...|+.-|...|+++.
T Consensus       740 ~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~  801 (814)
T 3mkq_A          740 NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTV  801 (814)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhH
Confidence                223335778888877654      3332    3433   4667788888888887543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.37  E-value=1.4  Score=44.97  Aligned_cols=61  Identities=8%  Similarity=-0.040  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALe  501 (540)
                      +...++..+. ..|++++|+..+++++..+|-+-.++..+-.+|+ ..|+..+|++.|+++.+
T Consensus       173 a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence            3445666666 4999999999999999999999999998888776 47999999999998765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.33  E-value=0.77  Score=46.25  Aligned_cols=66  Identities=24%  Similarity=0.295  Sum_probs=57.8

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009204          450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASF  516 (540)
Q Consensus       450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~  516 (540)
                      ..|++++|++.....|+.+|.|+.....|..+|. ..|++++|.+.++-+.+++|+.......|-.+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            4899999999999999999999999888888765 57999999999999999999987765555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.06  E-value=3.2  Score=43.84  Aligned_cols=108  Identities=15%  Similarity=0.082  Sum_probs=80.3

Q ss_pred             CCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAE--EPNNPLLLLNYAQFLHL--------VTKDYDRAEECFKRAIQS--DPPDAEALSQYADFL  482 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALal--DP~Np~allNLA~~L~~--------~~GD~deAEe~feRALeL--DPndAeAl~NLA~~L  482 (540)
                      +.|++++|..+|++..+.  .| |...|+.+-.+|..        ..++.++|.+.|++-.+.  .| |...|+.+-..+
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~  115 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLA  115 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence            459999999999999885  46 56666655544441        123478999999988775  34 556677776666


Q ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          483 WLVRKDLWAAEETYQQAMAA--EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       483 ~~~rGD~EEAee~feKALeL--DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      . ..|++++|+++|++..+.  .| +...+..+-..+.+.|+.++|
T Consensus       116 ~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          116 V-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             H-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             H-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHH
Confidence            5 479999999999998875  34 467778888889999997754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.95  E-value=2.8  Score=48.69  Aligned_cols=98  Identities=13%  Similarity=0.026  Sum_probs=71.7

Q ss_pred             HHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC--------------------CCCHHHHHHHHHHHHHH
Q 009204          429 GVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQ---SD--------------------PPDAEALSQYADFLWLV  485 (540)
Q Consensus       429 ALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALe---LD--------------------PndAeAl~NLA~~L~~~  485 (540)
                      .+..-|.++..-+-+|.++. ..|++++|.++|++|-.   .+                    ..-+..|.+.. .+++.
T Consensus       834 l~~~~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~-~LFe~  911 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLS-KKLFE  911 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHH-HHHHH
T ss_pred             HhhhccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHH-HHHHH
Confidence            44556788877788899888 49999999999999732   11                    11122333333 35667


Q ss_pred             cCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCCccccc
Q 009204          486 RKDLWAAEETYQQAMAAEP-NSSS----YASKYASFLWNTGGEETCFP  528 (540)
Q Consensus       486 rGD~EEAee~feKALeLDP-dnpe----al~NLA~~L~~~GR~Et~~p  528 (540)
                      .+-++.+++.-+.||+..+ ++..    .|.++-..+..+|++++||-
T Consensus       912 ~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          912 ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            8899999999999999765 4432    67888888999999998773

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.71  E-value=7.5  Score=36.63  Aligned_cols=42  Identities=10%  Similarity=-0.133  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRA  464 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRA  464 (540)
                      |+++.|....++.     ++...|..+|.... ..|+++-|+++|.++
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            8899888876654     67889999999888 499999999999885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.57  E-value=1.9  Score=48.74  Aligned_cols=55  Identities=15%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009204          443 YAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA  499 (540)
Q Consensus       443 LA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA  499 (540)
                      =+.||. ..|+++-|+++.++|+.+.|.+-..|..|+.+|.. .||++.|+-.+.-.
T Consensus       343 Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          343 QTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            366777 59999999999999999999999999999998765 79999998765544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.33  E-value=4.7  Score=42.68  Aligned_cols=69  Identities=16%  Similarity=0.055  Sum_probs=48.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcC
Q 009204          450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA--------MAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKA--------LeLDPdnpeal~NLA~~L~~~G  521 (540)
                      ..|++++|.++.+     .-++...|.++|..+. ..++++.|+++|.++        +.....+.+.+..++......|
T Consensus       664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          664 KVGQLTLARDLLT-----DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3788888888754     3467889999999765 578999999999986        2223555665556655555555


Q ss_pred             CCc
Q 009204          522 GEE  524 (540)
Q Consensus       522 R~E  524 (540)
                      +++
T Consensus       738 ~~~  740 (814)
T 3mkq_A          738 KFN  740 (814)
T ss_dssp             CHH
T ss_pred             chH
Confidence            544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=80.15  E-value=9.6  Score=36.96  Aligned_cols=67  Identities=18%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 009204          443 YAQFLHLVTKDYDRAEECFKRAIQ-----------------SDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPN  505 (540)
Q Consensus       443 LA~~L~~~~GD~deAEe~feRALe-----------------LDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPd  505 (540)
                      |-.+|+.+.+|+.+|..+++..|+                 +||.|-+...++-..+..+.|+.+||+.+|......+|-
T Consensus        67 Yk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           67 YESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            333455579999999999999993                 357787865555444556789999999999999999987


Q ss_pred             CHHH
Q 009204          506 SSSY  509 (540)
Q Consensus       506 npea  509 (540)
                      .+.+
T Consensus       147 f~~v  150 (242)
T 3kae_A          147 FSPV  150 (242)
T ss_dssp             HHHH
T ss_pred             cchH
Confidence            6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 51.2 bits (122), Expect = 9e-08
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL 484
           L    +   P +  L  ++ + L  +  D++RA+E   ++I+  P      SQ    +  
Sbjct: 18  LLIEAIKASPKDASLRSSFIE-LLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 76

Query: 485 VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
            +     A+      +  E    + +    +    + 
Sbjct: 77  AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 113

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASK 512
              +A E    AI++ P DA   S + + L  +  D   A+E   Q++   P     AS+
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELL-CIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 513 YASFLWNTGGEETCF 527
               +      +   
Sbjct: 70  LRHLVKAAQARKDFA 84

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 425 LYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLW 483
                  +EP+N  +LL  +  +H   +  DR+      AI+ +P  AEA S   +   
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 2/80 (2%)

Query: 440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQA 499
            +  A        D++ AE    +  + +P +   L   +  +    + L  +      A
Sbjct: 2   PMELAH-REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLA 59

Query: 500 MAAEPNSSSYASKYASFLWN 519
           +   P  +   S   +    
Sbjct: 60  IKQNPLLAEAYSNLGNVYKE 79

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMA 501
           N    +     + + A   +++A++  P  A A S  A  L   +  L  A   Y++A+ 
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIR 367

Query: 502 AEPNSSSYASKYASFLWNTG 521
             P  +   S   + L    
Sbjct: 368 ISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 426 YQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV 485
           Y   ++  PN+ ++  N A   +      D A + ++RAI+  P   +A    A+     
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLAN-ALKE 283

Query: 486 RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG 521
           +  +  AE+ Y  A+   P  +   +  A+     G
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 414 DDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFL-------------HLVTKDYDRAEEC 460
           D  +   R    Y+  +    ++P +    AQ+L             +      D A   
Sbjct: 27  DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86

Query: 461 FKRAIQSDPPDAEAL-SQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS-KYASFLW 518
           ++RAI +       L   YAD+     K        Y + +A E    +    +Y  F  
Sbjct: 87  YERAISTLLKKNMLLYFAYADYEESRMKYEK-VHSIYNRLLAIEDIDPTLVYIQYMKFAR 145

Query: 519 NTGGEETC 526
              G ++ 
Sbjct: 146 RAEGIKSG 153

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 6/72 (8%)

Query: 433 EPNNPLL----LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKD 488
           E  NPL                  D   A   F+ A+Q DP   EA            + 
Sbjct: 11  EEENPLRDHPQPFEEGLRRLQ-EGDLPNAVLLFEAAVQQDPKHMEAWQYLGT-TQAENEQ 68

Query: 489 LWAAEETYQQAM 500
              A    ++ +
Sbjct: 69  ELLAISALRRCL 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.44
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.38
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.27
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.82
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.57
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.32
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.21
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.93
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.82
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.52

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-15  Score=125.45  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+.+|+++|+.+|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+|.++|.++. ..|++++|+.+
T Consensus        16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~-~~~~~~~A~~~   93 (117)
T d1elwa_          16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRT   93 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHH-HccCHHHHHHH
Confidence            489999999999999999999999999999988 5999999999999999999999999999999765 58999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYASFL  517 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L  517 (540)
                      |++|++++|+++.++.+++.+.
T Consensus        94 ~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          94 YEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-14  Score=125.83  Aligned_cols=103  Identities=19%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|+|++|+.+|++|++++|+++.+|.++|.++.. .|++++|+.+|++||+++|++..++.++|.++. ..|++++|+.
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~   99 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALR   99 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHH
Confidence            34999999999999999999999999999999884 999999999999999999999999999999876 5899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +|++++.++|+++.++..++.+...
T Consensus       100 ~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_         100 DYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999998888776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.3e-14  Score=130.55  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=93.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|...|++++...|.++.++..+|.++. ..|++++|+++|++|++++|+++.++.++|.++. ..|++++|+++
T Consensus       284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~  361 (388)
T d1w3ba_         284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMH  361 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-TTTCCHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Confidence            378899999999999999999999999998888 5999999999999999999999999999998765 47889999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      |++|++++|+++.++.++|.+|.++|+
T Consensus       362 ~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         362 YKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=9.1e-15  Score=127.85  Aligned_cols=92  Identities=14%  Similarity=0.044  Sum_probs=85.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|+|++|+.+|++||.++|+++.+|.++|.++. ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.
T Consensus        16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~~   93 (201)
T d2c2la1          16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIA   93 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3499999999999999999999999999999988 59999999999999999999999999999998764 799999999


Q ss_pred             HHHHHHHhCCCCHH
Q 009204          495 TYQQAMAAEPNSSS  508 (540)
Q Consensus       495 ~feKALeLDPdnpe  508 (540)
                      +|++|+.++|++..
T Consensus        94 ~~~~al~l~p~~~~  107 (201)
T d2c2la1          94 NLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcccHH
Confidence            99999999986554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.3e-13  Score=124.38  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+..|++||+++|+++.+|.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.
T Consensus        49 ~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~  126 (259)
T d1xnfa_          49 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQD  126 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHHHH
Confidence            4599999999999999999999999999999988 59999999999999999999999999999998764 799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGE  523 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~  523 (540)
                      +|+++++.+|++......++......+..
T Consensus       127 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~  155 (259)
T d1xnfa_         127 DLLAFYQDDPNDPFRSLWLYLAEQKLDEK  155 (259)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHhhhH
Confidence            99999999999999888888777776653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.50  E-value=2e-14  Score=126.05  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---------VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV-  485 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---------~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~-  485 (540)
                      .+.|++|+..|++|++++|+|+.++.++|.++..         ..+++++|+.+|++||+++|+++.+++++|.++..+ 
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            4679999999999999999999999999998862         245678999999999999999999999999987542 


Q ss_pred             ---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          486 ---------RKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       486 ---------rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                               .+++++|+++|++|++++|++..++.+++......+.+++
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence                     2347999999999999999999999999988765554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.2e-14  Score=135.01  Aligned_cols=148  Identities=13%  Similarity=0.035  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhhchhhhhh----ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 009204          373 LDLWNSVLDEALRIQEESEY----RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLH  448 (540)
Q Consensus       373 ~~LW~~~L~eap~~q~~~~~----eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~  448 (540)
                      ...+..++.+-.+..+++..    ..++|+....+...+.+..  ....++++|+..|+++++.+|++..+|.++|.++.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~--~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK--SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            33455566555555554443    2446666666655443321  11235788888888888888888888888887777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          449 LVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       449 ~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                       ..|++++|+++|++||+++|++..+|.++|.++.. .|++++|+++|++|++++|.+..+|.++|.++...++..
T Consensus       124 -~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         124 -WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             -HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             -hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence             48888888888888888888888888888876654 577888888888888888888888888888877777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=122.18  Aligned_cols=103  Identities=12%  Similarity=0.025  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQSDPPD--AEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~--~~GD~deAEe~feRALeLDPnd--AeAl~NLA~~L~~~rGD~EEA  492 (540)
                      +++++|++.|+++|+++|+++.+++|||.+|..  ..+|+++|+.+|+++++.+|++  +++++++|.++. ..|++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHH
Confidence            689999999999999999999999999998862  1456678999999999999866  458999998776 58999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      +++|++|++++|++..+...++.+..+.
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998888776554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=124.77  Aligned_cols=108  Identities=21%  Similarity=0.238  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++++...|.++.++..++.++. ..|++++|+++
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~  327 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRL  327 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHH
Confidence            489999999999999999999999999999988 4999999999999999999999999999999765 57999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |++|++++|+++.++.++|.++..+|++++
T Consensus       328 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         328 YRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2e-13  Score=123.09  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHH
Q 009204          417 MDYFRTDLLYQMGVAE----EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAA  492 (540)
Q Consensus       417 Gd~eeAe~lYqkALal----DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEA  492 (540)
                      .+.+.|...+++++..    +|+++.+++++|.++.. .|++++|+++|++||+++|+++.++.++|.++. ..|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~-~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHh
Confidence            5677888889999875    44566799999999884 999999999999999999999999999999775 58999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          493 EETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       493 ee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++|++|++++|+++.++.++|.++..+|++++
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  123 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL  123 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.8e-13  Score=123.33  Aligned_cols=109  Identities=16%  Similarity=0.090  Sum_probs=97.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+.+|++++..+|+++.++.++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|++
T Consensus       184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~  261 (323)
T d1fcha_         184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVE  261 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3489999999999999999999999999999988 59999999999999999999999999999998765 789999999


Q ss_pred             HHHHHHHhCCCCHHH-----------HHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSY-----------ASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpea-----------l~NLA~~L~~~GR~Et  525 (540)
                      +|++|++++|++..+           |.+++.++..+|+.+.
T Consensus       262 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999988764           5667888888888764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-12  Score=121.35  Aligned_cols=108  Identities=18%  Similarity=0.283  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPN--NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~--Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +.+.+|...|+++++++|+  ++.++.++|.++. ..|++++|+.+|++++..+|+++.++.++|.++. ..|++++|++
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~  227 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHH
Confidence            4578899999999999987  5678889999888 5999999999999999999999999999999876 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|++|++++|+++.++.++|.++..+|++++|
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999998743

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.9e-13  Score=128.01  Aligned_cols=129  Identities=9%  Similarity=-0.045  Sum_probs=97.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .++|+....+...+.+.   ...+.+++|..+|++||+++|++..+|++.|.++....+++++|+++|+++|+++|++..
T Consensus        37 ~~~p~~~~a~~~~~~~~---~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~  113 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVL---QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ  113 (315)
T ss_dssp             CCCHHHHHHHHHHHHHH---HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccCHHHHHHHHHHHHHH---HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh
Confidence            45666666554432221   123677888888888888888888888888887764234588888888888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          474 ALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       474 Al~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|.++|.++. ..|++++|+++|++|++++|++..+|.++|.++..+|++++|
T Consensus       114 a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         114 VWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH
Confidence            8888887654 467888888888888888888888888888888888887753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-12  Score=117.33  Aligned_cols=105  Identities=14%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .++|++|...|.+   +.|.++.+++|+|.++. ..|++++|+++|++||++||+++.+|.++|.++. ..|++++|++.
T Consensus        18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~   92 (192)
T d1hh8a_          18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKD   92 (192)
T ss_dssp             TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHH
Confidence            4889999999986   36678999999999988 5999999999999999999999999999999876 47999999999


Q ss_pred             HHHHHHhCCCC----------------HHHHHHHHHHHHHcCCCcc
Q 009204          496 YQQAMAAEPNS----------------SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       496 feKALeLDPdn----------------peal~NLA~~L~~~GR~Et  525 (540)
                      |++|+...|.+                .++++++|.++..+|++++
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~  138 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  138 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHH
Confidence            99999987654                4678999999999999874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.9e-12  Score=113.97  Aligned_cols=105  Identities=18%  Similarity=0.142  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP---------------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np---------------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      .++|++|+.+|++||...|.+.               .++.|+|.++. ..|++++|+.++++||+++|+++.++.++|.
T Consensus        26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  104 (170)
T d1p5qa1          26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGE  104 (170)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHH
Confidence            4899999999999999987643               56778999888 5999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++. ..|++++|+.+|++|++++|+++.+...++.+...+++
T Consensus       105 ~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1         105 AHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            876 48999999999999999999999999999988766544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.2e-12  Score=114.26  Aligned_cols=89  Identities=17%  Similarity=0.122  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009204          436 NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       436 Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~  515 (540)
                      ++..+.+.|..++ ..|++++|+.+|++||+++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+|+++|.
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            4566778899999 5999999999999999999999999999999875 5799999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009204          516 FLWNTGGEETC  526 (540)
Q Consensus       516 ~L~~~GR~Et~  526 (540)
                      ++..+|++++|
T Consensus        81 ~~~~l~~~~~A   91 (201)
T d2c2la1          81 CQLEMESYDEA   91 (201)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHCCCHHHH
Confidence            99999998753

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=4e-12  Score=111.21  Aligned_cols=104  Identities=17%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP----------------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np----------------~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .|+|.+|...|++||..-|...                .++.|+|.++. .+|++++|+++|++||+++|++..+|+++|
T Consensus        30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g  108 (153)
T d2fbna1          30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLG  108 (153)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhH
Confidence            4899999999999998755432                36789999888 599999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTG  521 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~G  521 (540)
                      .++.. .|++++|+.+|++|++++|+|+.+...++.+...++
T Consensus       109 ~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         109 VANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            98875 799999999999999999999999999988876543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=2.7e-12  Score=112.82  Aligned_cols=105  Identities=15%  Similarity=0.090  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAE----------------EPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYA  479 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALal----------------DP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA  479 (540)
                      .|+|.+|+..|++||..                +|.+..++.|+|.++. ..|++++|+.+|++||+++|+++.+|.++|
T Consensus        40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g  118 (169)
T d1ihga1          40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRA  118 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHH
Confidence            38899999999999863                6778888999999888 599999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          480 DFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       480 ~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      .++.. .|++++|+..|++|++++|+++.+...++.+......
T Consensus       119 ~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         119 QGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            98765 7999999999999999999999999999988766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.34  E-value=3e-12  Score=106.71  Aligned_cols=83  Identities=13%  Similarity=0.024  Sum_probs=70.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      .|++++|+.+|+++++.+|+++.+|.++|.++. ..|++++|+.+|++||+++|+++.++.++|.++.. .|++++|+++
T Consensus        29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~~A~~~  106 (112)
T d1hxia_          29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALAS  106 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHHHHHHH
Confidence            488888888888888888888888888888877 48888888888888888888888888888887654 6788888888


Q ss_pred             HHHHH
Q 009204          496 YQQAM  500 (540)
Q Consensus       496 feKAL  500 (540)
                      |+++|
T Consensus       107 l~~~l  111 (112)
T d1hxia_         107 LRAWL  111 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-11  Score=110.33  Aligned_cols=147  Identities=13%  Similarity=0.067  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHhh--chhhhhh-ccCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 009204          371 EELDLWNSVLDEALR--IQEESEY-RILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFL  447 (540)
Q Consensus       371 ee~~LW~~~L~eap~--~q~~~~~-eaLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L  447 (540)
                      +...||+..+....+  ..+++.. ..+.+.-...+.+.+.+..   ..|++++|+.+|++||+++|+++.+|.++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~---~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYT---ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            667899986655433  5555444 3332222233444444432   459999999999999999999999999999998


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009204          448 HLVTKDYDRAEECFKRAIQSDPPD----------------AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS  511 (540)
Q Consensus       448 ~~~~GD~deAEe~feRALeLDPnd----------------AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~  511 (540)
                      . .+|++++|++.|++||...|.+                .++++++|.++. ..|++++|++.|++|+.+.|.......
T Consensus        81 ~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~-~~~~~~~A~~~l~~A~~~~~~~~~~~~  158 (192)
T d1hh8a_          81 Y-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSEPRHSKI  158 (192)
T ss_dssp             H-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred             H-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcchHHH
Confidence            8 4999999999999999976654                478899998765 589999999999999999998666555


Q ss_pred             HHHHHHHHcCC
Q 009204          512 KYASFLWNTGG  522 (540)
Q Consensus       512 NLA~~L~~~GR  522 (540)
                      +.|.-....+.
T Consensus       159 ~~Al~~~~~~~  169 (192)
T d1hh8a_         159 DKAMECVWKQK  169 (192)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhhh
Confidence            65554444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.27  E-value=1.2e-11  Score=109.19  Aligned_cols=105  Identities=14%  Similarity=0.173  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPN---------------NPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYAD  480 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~---------------Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~  480 (540)
                      .|+|.+|..+|++||..-|.               ...++.|+|.++. ..|++++|+.+++++|+++|++..++.++|.
T Consensus        28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~  106 (168)
T d1kt1a1          28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGE  106 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHH
Confidence            48999999999999975433               2245778999888 5999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009204          481 FLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGG  522 (540)
Q Consensus       481 ~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR  522 (540)
                      ++. ..|++++|+.+|++|++++|+++.++..++.+....+.
T Consensus       107 ~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1         107 AQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            876 57999999999999999999999999999988766554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-11  Score=106.28  Aligned_cols=85  Identities=16%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +...|..++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+|++|++++|+++.++.++|.++..
T Consensus        13 l~~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            344577888 49999999999999999999999999999998765 7999999999999999999999999999999999


Q ss_pred             cCCCccc
Q 009204          520 TGGEETC  526 (540)
Q Consensus       520 ~GR~Et~  526 (540)
                      +|++++|
T Consensus        91 ~g~~~eA   97 (159)
T d1a17a_          91 LGKFRAA   97 (159)
T ss_dssp             TTCHHHH
T ss_pred             cCCHHHH
Confidence            9998753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.26  E-value=9.6e-12  Score=103.63  Aligned_cols=86  Identities=13%  Similarity=0.008  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLW  518 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~  518 (540)
                      .+++.|..+.. .|++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.
T Consensus        18 ~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34678888884 999999999999999999999999999999875 5799999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 009204          519 NTGGEETC  526 (540)
Q Consensus       519 ~~GR~Et~  526 (540)
                      .+|++++|
T Consensus        96 ~~g~~~~A  103 (112)
T d1hxia_          96 NEHNANAA  103 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HCCCHHHH
Confidence            99998765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-11  Score=102.35  Aligned_cols=84  Identities=20%  Similarity=0.119  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          440 LLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       440 llNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +.+-|..++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+..|++|+.++|+++.+++++|.++..
T Consensus         6 l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            456788888 49999999999999999999999999999998765 7999999999999999999999999999999999


Q ss_pred             cCCCcc
Q 009204          520 TGGEET  525 (540)
Q Consensus       520 ~GR~Et  525 (540)
                      +|++++
T Consensus        84 ~~~~~~   89 (117)
T d1elwa_          84 LNRFEE   89 (117)
T ss_dssp             TTCHHH
T ss_pred             ccCHHH
Confidence            999873

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.5e-11  Score=101.44  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHHcC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA-------LSQYADFLWLVRK  487 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA-------l~NLA~~L~~~rG  487 (540)
                      ..++|++|+.+|+++|.++|+++.++.++|.++. .+|++++|++.|++||+++|++..+       +.++|..+. ..+
T Consensus        16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~-~~~   93 (128)
T d1elra_          16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEE   93 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTT
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH-HhC
Confidence            3489999999999999999999999999999999 4999999999999999999998764       445555444 468


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYASKYA  514 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal~NLA  514 (540)
                      ++++|+++|++++..+|+ ++....+.
T Consensus        94 ~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          94 KYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            999999999999999886 55544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=8.3e-11  Score=111.56  Aligned_cols=109  Identities=7%  Similarity=-0.115  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTK--DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~G--D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      +++++|..+|+++++.+|+++.++.++|.++.. .+  ++++|..+++++++++|++..++.......+...+++++|+.
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence            678999999999999999999999999988763 54  589999999999999999999876554445556789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +++++++++|++..+|.++|.++..+|+++++
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-10  Score=94.58  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-------AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSY  509 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-------AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpea  509 (540)
                      ++-.+++|..++. .|++++|+.+|++|+++.|.+       ++++.++|..++. .|++++|+.+|++|++++|+++.+
T Consensus         5 addc~~lG~~~~~-~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence            4556789999995 999999999999999986654       7889999998764 799999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 009204          510 ASKYASFLWNT  520 (540)
Q Consensus       510 l~NLA~~L~~~  520 (540)
                      +.|++.+...+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999876554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.7e-10  Score=97.81  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------
Q 009204          438 LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYAS------  511 (540)
Q Consensus       438 ~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~------  511 (540)
                      ..+-++|..++. .|+|++|+++|++||+++|+++.++.++|.++.. .|++++|++.+++|+.++|+++..+.      
T Consensus         5 ~~~k~~G~~~~~-~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            456689999995 9999999999999999999999999999998765 79999999999999999998876544      


Q ss_pred             -HHHHHHHHcCCCcc
Q 009204          512 -KYASFLWNTGGEET  525 (540)
Q Consensus       512 -NLA~~L~~~GR~Et  525 (540)
                       ++|.++..++++++
T Consensus        83 ~~lg~~~~~~~~~~~   97 (128)
T d1elra_          83 ARIGNSYFKEEKYKD   97 (128)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCHHH
Confidence             45555566666553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.4e-10  Score=115.12  Aligned_cols=124  Identities=10%  Similarity=0.015  Sum_probs=86.9

Q ss_pred             CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 009204          395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEA  474 (540)
Q Consensus       395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeA  474 (540)
                      ++++....+.+.+..   ....+++++|...|++++..+|.  .++.++|.++. .+|++++|+.+|++|++++|+++.+
T Consensus       115 l~~~~~~~~~~lg~~---~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~  188 (497)
T d1ya0a1         115 VDLPCRVKSSQLGII---SNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQP  188 (497)
T ss_dssp             -------------------------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHH
T ss_pred             CChhhHHHHHHhHHH---HHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHH
Confidence            355554444443322   34568899999999999998874  67888999888 5999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          475 LSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       475 l~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      |+++|.++. .+|++.+|+.+|.||+.++|.++.++.|++.++....+...
T Consensus       189 ~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~  238 (497)
T d1ya0a1         189 YNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRD  238 (497)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            999998765 58999999999999999999999999999999877665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-10  Score=98.48  Aligned_cols=83  Identities=13%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 009204          442 NYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL--VRKDLWAAEETYQQAMAAEPNS--SSYASKYASFL  517 (540)
Q Consensus       442 NLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~--~rGD~EEAee~feKALeLDPdn--peal~NLA~~L  517 (540)
                      +++..+. ..+++++|++.|++||.++|+++++++|||.+|..  ..+|+++|+.+|+++++.+|.+  +++++++|.++
T Consensus         4 ~l~n~~~-~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELV-SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            5566667 49999999999999999999999999999998753  1356778999999999999865  45899999999


Q ss_pred             HHcCCCcc
Q 009204          518 WNTGGEET  525 (540)
Q Consensus       518 ~~~GR~Et  525 (540)
                      ..+|++++
T Consensus        83 ~~~g~~~~   90 (122)
T d1nzna_          83 YRLKEYEK   90 (122)
T ss_dssp             HHTTCHHH
T ss_pred             HHHhhhHH
Confidence            99999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=8e-10  Score=96.24  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWL---------VRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~---------~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      ..+.+++|+..|++|++++|++++++.++|.++..         ..+++++|+.+|++|++++|+++.+++++|.+|..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            47789999999999999999999999999998763         235578999999999999999999999999999988


Q ss_pred             CCC
Q 009204          521 GGE  523 (540)
Q Consensus       521 GR~  523 (540)
                      |+.
T Consensus        89 g~~   91 (145)
T d1zu2a1          89 AFL   91 (145)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            763

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.87  E-value=2.1e-09  Score=93.30  Aligned_cols=89  Identities=12%  Similarity=-0.025  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP------------LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPP-----------DA  472 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np------------~allNLA~~L~~~~GD~deAEe~feRALeLDPn-----------dA  472 (540)
                      .|+|++|+..|++||+++|+++            .+|.|+|.++. ..|++++|.+.+++||++.|.           ..
T Consensus        22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            3899999999999999988753            57889999988 599999999999999987542           24


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          473 EALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       473 eAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      .+++++|.++. ..|++++|+++|++|+++.|..
T Consensus       101 ~a~~~~g~~~~-~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALD-GLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHH-HHHHHHHHHHHHHHHHHhhHHh
Confidence            47889998765 5799999999999999997644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6.3e-09  Score=91.99  Aligned_cols=87  Identities=13%  Similarity=0.047  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA---------------EALSQYADFLWLVRKDLWAAEETYQQAMA  501 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA---------------eAl~NLA~~L~~~rGD~EEAee~feKALe  501 (540)
                      +..+.+.|..++. .|++++|+.+|++||++.|...               .++.|+|.++.. .|++++|+.++++||.
T Consensus        13 a~~l~~~G~~~~~-~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          13 STIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhh
Confidence            4566778999994 9999999999999999987652               567788987664 7999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          502 AEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       502 LDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|+++.+++++|.++..+|++++
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~  114 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFEL  114 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHH
Confidence            999999999999999999999874

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=9.6e-09  Score=97.13  Aligned_cols=107  Identities=18%  Similarity=0.273  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      |++++|...|+++|+..|.+. .+|..|+.++. ..|++++|.+.|++|++..|.+...+..+|.+.+...|+.+.|..+
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            445555555555555555443 24455555444 2555555555555555555555555555554433333455555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          496 YQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      |++++...|+++..|..|+.++...|+.+
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence            55555555555555555555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.1e-09  Score=84.01  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNN-------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADF  481 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~N-------p~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~  481 (540)
                      +.|+|.+|..+|++|+++.|.+       +.++.++|.+++ ..|++++|+.+|++||+++|+++.++.|++.+
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            4599999999999999986554       678999999999 59999999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.78  E-value=1.6e-08  Score=97.13  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..|++++|+..|+++|+.+|+|+.++.+||.+|+ ..|++++|++.|+++++++|++..++.+|+.++.. .+..+++..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~a~~   85 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKDFAQ   85 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHHHHH
Confidence            3499999999999999999999999999999999 49999999999999999999999999998876543 233333333


Q ss_pred             HHHHHHH-hCCCCHHHHHHHHHHHHHcCCCc
Q 009204          495 TYQQAMA-AEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       495 ~feKALe-LDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      .+.++.. .+|+....+...+..+...|+.+
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~  116 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYE  116 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHH
Confidence            3332222 23333344444455555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=3e-08  Score=86.52  Aligned_cols=86  Identities=19%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             cCCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 009204          394 ILDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAE  473 (540)
Q Consensus       394 aLD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAe  473 (540)
                      .+++.....+.+.+.+.   ...+++++|+..|.+||+++|+++.+|+++|.++.. .|++++|+..|++|++++|++..
T Consensus        71 ~~~~~~~~~~~nla~~~---~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          71 KLQPVALSCVLNIGACK---LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             GGHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhChhhHHHHHHHHHHH---HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHH
Confidence            34555554444433332   234899999999999999999999999999999994 99999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 009204          474 ALSQYADFLW  483 (540)
Q Consensus       474 Al~NLA~~L~  483 (540)
                      ++..++.+..
T Consensus       147 ~~~~l~~~~~  156 (169)
T d1ihga1         147 IQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=4.9e-08  Score=92.09  Aligned_cols=108  Identities=7%  Similarity=-0.084  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-cC
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---------VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV-RK  487 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~---------~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~-rG  487 (540)
                      ..++|..+|+++|+.+|++..+|...+.++..         ..|++++|+.+|+++++.+|+++.++.++|.++... ++
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            45899999999999999999999887766442         134589999999999999999999999999876542 24


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCCcc
Q 009204          488 DLWAAEETYQQAMAAEPNSSSYA-SKYASFLWNTGGEET  525 (540)
Q Consensus       488 D~EEAee~feKALeLDPdnpeal-~NLA~~L~~~GR~Et  525 (540)
                      ++++|+.+++++++++|++..++ ...|.++...|++++
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            68999999999999999999986 466788888888753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1e-08  Score=96.33  Aligned_cols=109  Identities=13%  Similarity=-0.045  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEE------PNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLW  483 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalD------P~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~  483 (540)
                      .++|++|..+|.+|+.+.      +.-...+.++|.++. ..|++++|+++|++|+++.+..      ..++.++|.++.
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            478899999999998872      223457888888877 4999999999999999886655      567777887665


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCcc
Q 009204          484 LVRKDLWAAEETYQQAMAAEPN------SSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       484 ~~rGD~EEAee~feKALeLDPd------npeal~NLA~~L~~~GR~Et  525 (540)
                      ...|++++|+++|++|+.+.+.      ...++.++|.++..+|++++
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~  176 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence            5568899999999999887432      23458889999999998874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.68  E-value=5.6e-08  Score=84.33  Aligned_cols=86  Identities=13%  Similarity=-0.032  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 009204          439 LLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----------------EALSQYADFLWLVRKDLWAAEETYQQAMAA  502 (540)
Q Consensus       439 allNLA~~L~~~~GD~deAEe~feRALeLDPndA----------------eAl~NLA~~L~~~rGD~EEAee~feKALeL  502 (540)
                      .+..-|..++ ..|+|++|+..|++||.+-|...                ..+.|+|.+++. .|++++|++++++|+++
T Consensus        19 ~~~~~G~~~f-~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          19 DIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhccccc
Confidence            3445677788 49999999999999998765442                367789987764 78999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCCccc
Q 009204          503 EPNSSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       503 DPdnpeal~NLA~~L~~~GR~Et~  526 (540)
                      +|++..+++++|.++..+|++++|
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A  120 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEA  120 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHH
Confidence            999999999999999999998753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.66  E-value=5.8e-08  Score=85.11  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee  494 (540)
                      ..+++++|+..|+++|.++|++..+++++|.++. ..|++++|+..|++|++++|+++.++..++.+........++..+
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3589999999999999999999999999999988 499999999999999999999999999998865443322334445


Q ss_pred             HHHHHHH
Q 009204          495 TYQQAMA  501 (540)
Q Consensus       495 ~feKALe  501 (540)
                      .|.+.++
T Consensus       155 ~~~~~f~  161 (168)
T d1kt1a1         155 TYANMFK  161 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.7e-09  Score=106.73  Aligned_cols=105  Identities=11%  Similarity=-0.034  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +.|+.|...|++++.++|++..++.++|..+. ..|++++|...|++++.++|.  .++.++|.++. .++++++|+.+|
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y  175 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHH
Confidence            56777788888888899999999999999888 599999999999999998874  57888998764 689999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          497 QQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       497 eKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      ++|++++|+++.++.++|.++...|++.+
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~  204 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKGDHLT  204 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=8.8e-08  Score=85.50  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNP-----LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD------AEALSQYADFLWL  484 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np-----~allNLA~~L~~~~GD~deAEe~feRALeLDPnd------AeAl~NLA~~L~~  484 (540)
                      .|++++|+.+|++||+..|++.     .++.++|.++. ..|++++|+.+|++|+++.+..      ..++.+++.++. 
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-  102 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-  102 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-
Confidence            4999999999999999999874     47888999888 5999999999999999976543      345667777655 


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCcc
Q 009204          485 VRKDLWAAEETYQQAMAAEPN--------SSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       485 ~rGD~EEAee~feKALeLDPd--------npeal~NLA~~L~~~GR~Et  525 (540)
                      ..|++.+|...+.+++.+.+.        ....+..+|.++...|+++.
T Consensus       103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_         103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence            579999999999999986432        23467788999999999763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.2e-07  Score=89.52  Aligned_cols=106  Identities=11%  Similarity=0.122  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 009204          417 MDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETY  496 (540)
Q Consensus       417 Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~f  496 (540)
                      +++++|...|++|++..|.+...+..+|.+.....|+.+.|..+|++++...|+++..+..|+.++. ..|++++|..+|
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~-~~g~~~~aR~~f  226 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-HLNEDNNTRVLF  226 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HcCChHHHHHHH
Confidence            6778888888888888888888888888765544688888888888888888888888888888765 467888888888


Q ss_pred             HHHHHhCCCCH----HHHHHHHHHHHHcCCC
Q 009204          497 QQAMAAEPNSS----SYASKYASFLWNTGGE  523 (540)
Q Consensus       497 eKALeLDPdnp----eal~NLA~~L~~~GR~  523 (540)
                      ++|+...|.++    ..|..+..+-...|+.
T Consensus       227 e~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            88888777543    4777888877777764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.54  E-value=3.9e-07  Score=82.12  Aligned_cols=117  Identities=9%  Similarity=-0.022  Sum_probs=88.3

Q ss_pred             CCHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCCH----------------------HHHHHHHHHHHHhcC
Q 009204          395 LDHETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNNP----------------------LLLLNYAQFLHLVTK  452 (540)
Q Consensus       395 LD~e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~Np----------------------~allNLA~~L~~~~G  452 (540)
                      +|-+....+.+.+...   ...|++++|..+|.+||++.|.+.                      .++.+++..+. ..|
T Consensus         6 ~D~~~f~~~~~~g~~~---~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g   81 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHA---AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACG   81 (179)
T ss_dssp             BHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred             ccHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            3444444444433221   234899999999999999876543                      46778898888 599


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHH
Q 009204          453 DYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAM-------AAEPNSSSYASKYASFL  517 (540)
Q Consensus       453 D~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKAL-------eLDPdnpeal~NLA~~L  517 (540)
                      ++++|+.+++++++++|.+..+|.+++.+++ ..|++.+|++.|+++.       -++|. +....-+..++
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~-~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            9999999999999999999999999999876 4799999999999984       46776 44433334443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.53  E-value=5.5e-08  Score=84.10  Aligned_cols=87  Identities=21%  Similarity=0.038  Sum_probs=71.3

Q ss_pred             HHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 009204          438 LLLLNY--AQFLHLVTKDYDRAEECFKRAIQSDPPD------------AEALSQYADFLWLVRKDLWAAEETYQQAMAAE  503 (540)
Q Consensus       438 ~allNL--A~~L~~~~GD~deAEe~feRALeLDPnd------------AeAl~NLA~~L~~~rGD~EEAee~feKALeLD  503 (540)
                      .++..+  |..++ ..|+|++|++.|++||+++|+.            +.+|.|+|.++.. .|++++|+..+++|+++.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcc
Confidence            445555  66667 4899999999999999998875            4678999998764 799999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHHcCCCccc
Q 009204          504 PN-----------SSSYASKYASFLWNTGGEETC  526 (540)
Q Consensus       504 Pd-----------npeal~NLA~~L~~~GR~Et~  526 (540)
                      |.           ...+++++|.+|..+|+++++
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHH
Confidence            42           234689999999999998854

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=2.1e-07  Score=87.14  Aligned_cols=123  Identities=12%  Similarity=0.110  Sum_probs=94.9

Q ss_pred             HHHHhcccccccccCCCCCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009204          398 ETMQHFVTPVTVKLEPDDYMDYFRTDLLYQMGVAEEPNN------PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD  471 (540)
Q Consensus       398 e~~~~lvapv~a~Le~d~~Gd~eeAe~lYqkALalDP~N------p~allNLA~~L~~~~GD~deAEe~feRALeLDPnd  471 (540)
                      +.+..+.+.+.+.   ...|++++|..+|++++.+.+.+      ..++.++|.++....|++++|+++|++|+++.+.+
T Consensus        75 ~~a~~~~~~g~~y---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_          75 EAGNTYVEAYKCF---KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             HHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH---HHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444433332   24589999999999999986665      56788888877644699999999999999874332


Q ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCCc
Q 009204          472 ------AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSS-------SYASKYASFLWNTGGEE  524 (540)
Q Consensus       472 ------AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnp-------eal~NLA~~L~~~GR~E  524 (540)
                            ..++.++|.++. ..|++++|+++|++++...|.++       .++.+.+.++...|+++
T Consensus       152 ~~~~~~~~~~~~la~~~~-~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  216 (290)
T d1qqea_         152 QSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             CchhhhhhHHHHHHHHHH-HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHH
Confidence                  456888998776 47999999999999999988775       35677888888888865

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.32  E-value=1.4e-06  Score=78.49  Aligned_cols=87  Identities=7%  Similarity=-0.035  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 009204          437 PLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDA----------------------EALSQYADFLWLVRKDLWAAEE  494 (540)
Q Consensus       437 p~allNLA~~L~~~~GD~deAEe~feRALeLDPndA----------------------eAl~NLA~~L~~~rGD~EEAee  494 (540)
                      -..+.+.|..+. ..|++++|.++|.+||++.|++.                      .++.+++..+. ..|++++|+.
T Consensus        11 f~~~~~~g~~~~-~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~   88 (179)
T d2ff4a2          11 FVAEKTAGVHAA-AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHH
Confidence            356777888888 49999999999999999987663                      56777887765 4799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWNTGGEET  525 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~~GR~Et  525 (540)
                      +++++++++|.+..+|.+++.+|..+|+.++
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~e  119 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSD  119 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.30  E-value=4e-07  Score=87.19  Aligned_cols=74  Identities=22%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009204          450 VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNSSSYASKYASFLWNTGGEE  524 (540)
Q Consensus       450 ~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdnpeal~NLA~~L~~~GR~E  524 (540)
                      ..|++++|++.|+++|+.+|+|+.++.+|+.+|.. .|++++|++.|+++++++|++..++..|+.++...++.+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            48999999999999999999999999999998764 799999999999999999999999999999887766544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.3e-06  Score=77.81  Aligned_cols=92  Identities=21%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 009204          432 EEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPD-----AEALSQYADFLWLVRKDLWAAEETYQQAMAAEPNS  506 (540)
Q Consensus       432 lDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPnd-----AeAl~NLA~~L~~~rGD~EEAee~feKALeLDPdn  506 (540)
                      .++.+++++.-.|.++. ..|++++|+++|++||++.|++     ..++.++|.++. ..|++++|+.+|++++++.|..
T Consensus         7 ~~~~~ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhh
Confidence            34445667777888888 4999999999999999999987     357888898776 4799999999999999976543


Q ss_pred             ------HHHHHHHHHHHHHcCCCcc
Q 009204          507 ------SSYASKYASFLWNTGGEET  525 (540)
Q Consensus       507 ------peal~NLA~~L~~~GR~Et  525 (540)
                            ...+.+++.++...|+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~  109 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQT  109 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3457888899999998753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=2e-05  Score=68.80  Aligned_cols=95  Identities=11%  Similarity=-0.086  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 009204          419 YFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL--VTKDYDRAEECFKRAIQSDPPDA-EALSQYADFLWLVRKDLWAAEET  495 (540)
Q Consensus       419 ~eeAe~lYqkALalDP~Np~allNLA~~L~~--~~GD~deAEe~feRALeLDPndA-eAl~NLA~~L~~~rGD~EEAee~  495 (540)
                      +..-...|.+...-.|. ....++||+.|..  ...+.++|+.+++++++.+|.+. +.++++|..++. .|+|++|.++
T Consensus        18 l~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~   95 (124)
T d2pqrb1          18 LEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRY   95 (124)
T ss_dssp             HHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            34444455555444454 6889999998863  24567899999999999999775 799999998875 7899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHH
Q 009204          496 YQQAMAAEPNSSSYASKYAS  515 (540)
Q Consensus       496 feKALeLDPdnpeal~NLA~  515 (540)
                      ++++++++|+|..+..-.-.
T Consensus        96 ~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          96 VDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHccCCCcHHHHHHHHH
Confidence            99999999999988654433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.93  E-value=3.8e-05  Score=64.48  Aligned_cols=93  Identities=14%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCHHHHHH
Q 009204          418 DYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDLWAAEE  494 (540)
Q Consensus       418 d~eeAe~lYqkALalDP~Np~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~EEAee  494 (540)
                      |+++|..+|++|.+..  ++.+.++++..   ...+.++|.++|++|.+.  +++.++.++|.++...   ..|+++|++
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            4566666666666553  34444455431   355666666666666553  4666666666554321   235666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 009204          495 TYQQAMAAEPNSSSYASKYASFLWN  519 (540)
Q Consensus       495 ~feKALeLDPdnpeal~NLA~~L~~  519 (540)
                      +|++|.+.  .++.+.++||.+|..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            66666554  455566666665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.82  E-value=9.4e-05  Score=66.61  Aligned_cols=100  Identities=9%  Similarity=0.101  Sum_probs=77.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCC
Q 009204          415 DYMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKD  488 (540)
Q Consensus       415 ~~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD  488 (540)
                      ..+++++|..+|++|.+.  .|+.++.+||.++..   ...++.+|..+++++...  +++.+..++|.++...   ..+
T Consensus        14 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~   89 (265)
T d1ouva_          14 KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQN   89 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchh
Confidence            458999999999999764  688999999998773   256899999999998764  5888888888765431   357


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009204          489 LWAAEETYQQAMAAEPNSSSYASKYASFLWNT  520 (540)
Q Consensus       489 ~EEAee~feKALeLDPdnpeal~NLA~~L~~~  520 (540)
                      .++|..+|+++....+  ..+...++..+...
T Consensus        90 ~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~  119 (265)
T d1ouva_          90 TNKALQYYSKACDLKY--AEGCASLGGIYHDG  119 (265)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhhhhhhh--hhHHHhhcccccCC
Confidence            8999999999988655  45566677666653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=0.00016  Score=60.44  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHL---VTKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~---~~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~  489 (540)
                      ..+.++|..+|+++.+.  .++.+.+++|.++..   ...|+++|.++|++|.+.  +++.+..+||.++...   ..|+
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence            36789999999999874  689999999998763   146799999999999875  6889999999977652   3589


Q ss_pred             HHHHHHHHHHHHhCCC
Q 009204          490 WAAEETYQQAMAAEPN  505 (540)
Q Consensus       490 EEAee~feKALeLDPd  505 (540)
                      ++|+++|++|.++...
T Consensus       112 ~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         112 KQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHCCCH
Confidence            9999999999987543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=0.00018  Score=64.67  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---cCCH
Q 009204          416 YMDYFRTDLLYQMGVAEEPNNPLLLLNYAQFLHLV---TKDYDRAEECFKRAIQSDPPDAEALSQYADFLWLV---RKDL  489 (540)
Q Consensus       416 ~Gd~eeAe~lYqkALalDP~Np~allNLA~~L~~~---~GD~deAEe~feRALeLDPndAeAl~NLA~~L~~~---rGD~  489 (540)
                      ..+...+..+++++..  +.++.+++++|.++...   .+|+++|+.+|++|.+.  +++.+++++|.++...   .+|+
T Consensus       159 ~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~  234 (265)
T d1ouva_         159 PKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNE  234 (265)
T ss_dssp             CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCS
T ss_pred             ccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCH
Confidence            3677888999998886  56899999999887631   46899999999999887  5789999999876542   2389


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 009204          490 WAAEETYQQAMAAEPNS  506 (540)
Q Consensus       490 EEAee~feKALeLDPdn  506 (540)
                      ++|+++|++|..+....
T Consensus       235 ~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         235 KQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             TTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHCcCHH
Confidence            99999999999887554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=7.9e-05  Score=64.95  Aligned_cols=65  Identities=9%  Similarity=-0.072  Sum_probs=57.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 009204          413 PDDYMDYFRTDLLYQMGVAEEPNNP-LLLLNYAQFLHLVTKDYDRAEECFKRAIQSDPPDAEALSQY  478 (540)
Q Consensus       413 ~d~~Gd~eeAe~lYqkALalDP~Np-~allNLA~~L~~~~GD~deAEe~feRALeLDPndAeAl~NL  478 (540)
                      ..+..+..+++.+++++++.+|.+. +.++++|..++ ..|+|++|.++++++|+++|++..+....
T Consensus        48 S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          48 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3455778999999999999999875 89999999999 59999999999999999999999987543