Citrus Sinensis ID: 009225


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MGACVSTPRGCVGGRSSSSKKKKKKSFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRRSGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccccHHHcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEcHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHccccEEcccccEEEEcccEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccEEcEEEEcccccccccccccccccc
cccccccccccccccccccccHcccccEEcccHcccccccccccccccccccccccccccccccHHHHHHccHHHEcccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccHccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccHccHHHHcccccccccccccccccccccccccccccccHccccEEEEEEEEccccccccccccHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEcccHcHHHHHHcccccccccccccccEEEEEEEccccccHHcccccccccEEEEEEEEEcccHHHHccHHHHHHHHHHHccHHHHcccccccccccHHHHHHHHHHcccHHHccccHHHHHHHHHcccccEEcccccccEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcEEEEEEEEEcccHHHcccHEEEEEEEEcEEEccccccccccccc
mgacvstprgcvggrsssskkkkKKSFKRVasrlptdgsldkvdrpppvdrhssftnpalqagsvddswfdSVAIFesdgeddddfvsvQDDVvslngsdgvsrtsnvslrdanhrghnvniqctsltdqlqrpgglsagnsahnsvsdvgknsssrvansenvhsqsksdgpsyegkqpvfldeisssvdegsgkdeglldncgiipsnclpclastvpsvekrrsgssspprpfkktaSKLSFKwkeghanatLVSSKMLlsrpisgaqvpfcpiekkmldswsqiepntfkvrGVNYLRDKKKefahncaayypfgvdvfLSQRKIDHIARfvelpaisshaklppmlvvnvqiplyptaifqseidgeGISIVLYFKLNESYAKELPLHFQESIRRIIDDEvekvkgfpvdtivpFRERLKILGRVVNVEDLHLSAAERKLLQAynekpvlsrpqhefylgenyleididmhrfSYISRKGFEAFLDRLKICILDVgltiqgnkvdelpeQILCCIRINgidymnyhqlghkeetl
mgacvstprgcvggrsssskkkkkksfkrvasrlptdgsldkvdrppPVDRHSSftnpalqagsvddsWFDSVAIFESDGEDDDDFVSVQDDVVslngsdgvsrtsnvSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSEnvhsqsksdgpsyegKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSvekrrsgssspprpfkkTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLdswsqiepntfKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDdevekvkgfpvdtivpfrerLKILGRVVNVEDLHLSAAERKLLQaynekpvlsrpqHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTiqgnkvdelpEQILCCIRINGIDYMNYHQLGHKEETL
MGACVSTPRGCVGGRsssskkkkkksFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQAGSVDDSWFDSVAIFEsdgeddddfvsvqddvvsLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKrrsgssspprpFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
********************************************************************WF*********************************************************************************************************************************LLDNCGIIPSNCLPCLAS****************************KWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQL*******
MGACVS*******************************************************AGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNG********************************************************************************************************************************************************************LSRPISGAQVPF**IEKKM**SWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIAR**********AKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESY**********SIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQL*******
*******************************SRLPTDGSLDKVDRPPPVDRHSSFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGN***********************************GKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTV*********************SKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
**************************************************************GSVDDSWFDSVAIFESDGEDDDDFVSVQDDVV*L***********************V*IQCT*************************************************************S*****G*GKDEGLLDNCGIIPSNCLPCLASTV******************KTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYH*********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGACVSTPRGCVGGRSSSSKKKKKKSFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRRSGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
224110962551 predicted protein [Populus trichocarpa] 0.981 0.961 0.704 0.0
255558294512 conserved hypothetical protein [Ricinus 0.911 0.960 0.697 0.0
356497824512 PREDICTED: uncharacterized protein LOC10 0.938 0.990 0.662 0.0
356501948513 PREDICTED: uncharacterized protein LOC10 0.940 0.990 0.664 0.0
449434853536 PREDICTED: uncharacterized protein LOC10 0.983 0.990 0.644 0.0
225424837510 PREDICTED: uncharacterized protein LOC10 0.931 0.986 0.647 0.0
359473303494 PREDICTED: uncharacterized protein LOC10 0.901 0.985 0.634 0.0
357486405489 hypothetical protein MTR_5g037270 [Medic 0.901 0.995 0.636 0.0
356524101512 PREDICTED: uncharacterized protein LOC10 0.935 0.986 0.610 1e-178
297840625492 hypothetical protein ARALYDRAFT_475347 [ 0.896 0.983 0.609 1e-174
>gi|224110962|ref|XP_002315697.1| predicted protein [Populus trichocarpa] gi|222864737|gb|EEF01868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/552 (70%), Positives = 445/552 (80%), Gaps = 22/552 (3%)

Query: 1   MGACVSTPRGCVGGRSSSSKK-------KKKKSFKRVA---SRLPTDGSLDKVDRP---- 46
           MGACVSTP GCVGGR  SSKK       K+  +FKR +   SR+ +D   DK D P    
Sbjct: 1   MGACVSTPEGCVGGRLKSSKKMKIRRKGKRGTAFKRRSVPPSRMLSD---DKSDGPASAA 57

Query: 47  PPVDRHSSFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTS 106
           PP     SFTNP  Q GS +++WFDS AI ESD   D+DF SV DD++SLN  DGVS +S
Sbjct: 58  PPPHHLPSFTNPTFQ-GSKEEAWFDSAAILESDC--DEDFESVPDDILSLNVFDGVSLSS 114

Query: 107 NVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHS 166
             S R ANH   NVN+Q +S TDQ+Q+ G LSAGNS H+SVS+  + ++  V N ++V S
Sbjct: 115 TASGRVANHGDCNVNMQHSSFTDQMQKAGDLSAGNSTHDSVSEATEQTNIHVFNLDHVDS 174

Query: 167 QSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRR 226
            SKSDGPS E KQPVFLDEI+S+ DE +G +EGLLDNCGI+P NCLPCLASTVP VEKRR
Sbjct: 175 VSKSDGPSNEVKQPVFLDEITSA-DENAG-EEGLLDNCGILPGNCLPCLASTVPPVEKRR 232

Query: 227 SGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWS 286
           S SSSPP   KK A KL FKWKEG+++ TL SSKM+L RPI+G+QVPFCP+EKKMLD WS
Sbjct: 233 SLSSSPPSARKKGALKLPFKWKEGNSSNTLFSSKMILHRPIAGSQVPFCPMEKKMLDCWS 292

Query: 287 QIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAK 346
            IEP +FKVRG +Y RDKKKEFA NC+AYYPFGVDVFLS RK+DHIARFV+LP I+S   
Sbjct: 293 HIEPCSFKVRGQSYFRDKKKEFAPNCSAYYPFGVDVFLSPRKVDHIARFVDLPIINSAGN 352

Query: 347 LPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEV 406
            P +LVVNVQ+PLYP AIFQSE DGEG + VLYFKL++SY+KELP HFQESIRR+IDDEV
Sbjct: 353 FPTILVVNVQVPLYPAAIFQSESDGEGTNFVLYFKLSDSYSKELPTHFQESIRRLIDDEV 412

Query: 407 EKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGE 466
           EKVKGFPVDTI  FRERLKILGRVVNVEDLHLSAAERKL+QAYNEKPVLSRPQHEFYLG+
Sbjct: 413 EKVKGFPVDTIASFRERLKILGRVVNVEDLHLSAAERKLMQAYNEKPVLSRPQHEFYLGD 472

Query: 467 NYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGID 526
           NY EIDIDMHRFSYISRKGF+AFLDRLKIC+LD+GLTIQGNKV+ELPEQILCCIR+NGID
Sbjct: 473 NYFEIDIDMHRFSYISRKGFQAFLDRLKICVLDIGLTIQGNKVEELPEQILCCIRLNGID 532

Query: 527 YMNYHQLGHKEE 538
           YM YHQLG  +E
Sbjct: 533 YMKYHQLGLNQE 544




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] Back     alignment and taxonomy information
>gi|356501948|ref|XP_003519785.1| PREDICTED: uncharacterized protein LOC100819425 [Glycine max] Back     alignment and taxonomy information
>gi|449434853|ref|XP_004135210.1| PREDICTED: uncharacterized protein LOC101206832 [Cucumis sativus] gi|449516445|ref|XP_004165257.1| PREDICTED: uncharacterized protein LOC101227289 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225424837|ref|XP_002272954.1| PREDICTED: uncharacterized protein LOC100260447 isoform 1 [Vitis vinifera] gi|296086464|emb|CBI32053.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473303|ref|XP_003631287.1| PREDICTED: uncharacterized protein LOC100260447 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357486405|ref|XP_003613490.1| hypothetical protein MTR_5g037270 [Medicago truncatula] gi|355514825|gb|AES96448.1| hypothetical protein MTR_5g037270 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356524101|ref|XP_003530671.1| PREDICTED: uncharacterized protein LOC100788001 [Glycine max] Back     alignment and taxonomy information
>gi|297840625|ref|XP_002888194.1| hypothetical protein ARALYDRAFT_475347 [Arabidopsis lyrata subsp. lyrata] gi|297334035|gb|EFH64453.1| hypothetical protein ARALYDRAFT_475347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
TAIR|locus:2202877492 CW14 "AT1G59650" [Arabidopsis 0.737 0.808 0.68 1e-154
TAIR|locus:2012848485 AT1G10410 [Arabidopsis thalian 0.718 0.8 0.670 3.3e-143
TAIR|locus:2093868513 AT3G29180 "AT3G29180" [Arabido 0.548 0.576 0.555 1.3e-90
TAIR|locus:2175648511 AT5G39430 "AT5G39430" [Arabido 0.548 0.579 0.524 2.8e-84
TAIR|locus:2014819504 AT1G13970 "AT1G13970" [Arabido 0.509 0.545 0.544 1.5e-81
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.164 0.121 0.326 2.2e-07
TAIR|locus:2117134724 EDR2 "ENHANCED DISEASE RESISTA 0.135 0.100 0.364 0.00063
TAIR|locus:2057547737 AT2G28320 [Arabidopsis thalian 0.118 0.086 0.307 0.00082
TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1416 (503.5 bits), Expect = 1.0e-154, Sum P(2) = 1.0e-154
 Identities = 272/400 (68%), Positives = 318/400 (79%)

Query:   142 SAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLL 201
             S+ +SV D     S+R + S+ V SQSKS+    + KQ VF+DEISS+ D  S KDEGLL
Sbjct:    94 SSMSSVKDSNLGGSARNSLSD-VISQSKSESALIDTKQAVFIDEISSNADGSSNKDEGLL 152

Query:   202 DNCGIIPSNCLPCLASTVPSVEKXXXXXXXXXXXFKKTASKLSFKWKEGHANATLVSSKM 261
             +NCGI+PSNCLPCL STVPS+EK            KK A KLSFKW+EGH    L S+ M
Sbjct:   153 ENCGILPSNCLPCLNSTVPSIEKRRSLSSSPPSTRKKAAVKLSFKWREGHPTGPLFSTTM 212

Query:   262 LLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVD 321
              L RP++G+QVPFCP+EKKM DSWS IEP +F+VR   Y RDKKKE A N AAY PFGVD
Sbjct:   213 QLQRPMAGSQVPFCPLEKKMFDSWSIIEPGSFRVRSKTYFRDKKKELAPNYAAYNPFGVD 272

Query:   322 VFLSQRKIDHIARFVELPAISSH-AKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYF 380
             VFLSQRK++HIA++VELP +++   KLP +LVVNVQIPLYP AIF  E DGEG++ VLYF
Sbjct:   273 VFLSQRKVNHIAQYVELPVVTTTPTKLPSILVVNVQIPLYPAAIFHGETDGEGMNFVLYF 332

Query:   381 KLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSA 440
             KL+++Y KELP HFQESI+R++DDEVEKV+G+  DT VPFRERLKILGRV NV+DL L+ 
Sbjct:   333 KLSDNYLKELPPHFQESIQRLLDDEVEKVRGYTTDTNVPFRERLKILGRVANVDDLQLNG 392

Query:   441 AERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDV 500
             AE+KL+ AYNEKPVLSRPQHEFY GENY EIDIDMHRFSYISRKGFEAFLDRLK C+LDV
Sbjct:   393 AEKKLMNAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKNCVLDV 452

Query:   501 GLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL 540
             GLTIQGNK +ELPEQILCCIR+NGIDYMNYHQL   +E L
Sbjct:   453 GLTIQGNKPEELPEQILCCIRLNGIDYMNYHQLALSQEVL 492


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117134 EDR2 "ENHANCED DISEASE RESISTANCE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 5e-87
PLN00188719 PLN00188, PLN00188, enhanced disease resistance pr 3e-04
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
 Score =  267 bits (684), Expect = 5e-87
 Identities = 109/246 (44%), Positives = 137/246 (55%), Gaps = 35/246 (14%)

Query: 285 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSH 344
           WS+ +P+TFKVRG  YL+DKKK  A N   Y   GVD F S +KIDHIA   +L    + 
Sbjct: 1   WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59

Query: 345 AK-LPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIID 403
            K LP +L+VN+Q+P            GEG S+VLYF L E   KEL   F   +RR +D
Sbjct: 60  KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108

Query: 404 -DEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVL--SRPQH 460
            DE      F         ERLKI+ R+V       S   R+L   YNEKP L    PQ 
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQL--VYNEKPCLVGKAPQC 150

Query: 461 EFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCI 520
            +Y G NYLEID+D+   S I+RKG E FL  L   +LD+  TIQG   +ELPE++L  +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209

Query: 521 RINGID 526
           R+N ID
Sbjct: 210 RLNKID 215


This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215

>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=5e-74  Score=559.74  Aligned_cols=222  Identities=44%  Similarity=0.731  Sum_probs=207.6

Q ss_pred             eecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCC-CCCcEEEEEEEcCCCCCc
Q 009225          285 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHA-KLPPMLVVNVQIPLYPTA  363 (540)
Q Consensus       285 WSepd~s~FkVRG~~YlkDKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~-k~P~vfIVNiQVPg~P~s  363 (540)
                      ||+|++++|+|||+|||+||||+||+++ +|+++|||||++++|++|||+|+.++.+.... +.||+||||||||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            9999999999999999999999999875 99999999999999999999999999877654 599999999999999999


Q ss_pred             cccccCCCCceEEEEEEEeCchhhccCChhhHhhHhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHH
Q 009225          364 IFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAE  442 (540)
Q Consensus       364 lF~~~~DGeG~SlVlYF~l~e~~~kelp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIP~VVnGpwl~l~aae  442 (540)
                      +| ++.||+|||+|+||++++++.++.++++.++++||++.+         +..|+|| +||||||+|+||+|+      
T Consensus        80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------  143 (227)
T PF07059_consen   80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------  143 (227)
T ss_pred             cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence            99 999999999999999999998888888999999999833         1127899 999999999999996      


Q ss_pred             HHHHHhh-CCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceece
Q 009225          443 RKLLQAY-NEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCC  519 (540)
Q Consensus       443 r~l~qav-ngKPvLir--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~  519 (540)
                        +++++ |+||||||  ++|+||+|+||||||||||+ |+|||++++++++|+|+|+|||||||||+++||||||||||
T Consensus       144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~  220 (227)
T PF07059_consen  144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC  220 (227)
T ss_pred             --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence              45555 99999997  69999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q 009225          520 IRINGID  526 (540)
Q Consensus       520 vRLn~ID  526 (540)
                      +||+|||
T Consensus       221 ~Rl~~id  227 (227)
T PF07059_consen  221 VRLNHID  227 (227)
T ss_pred             EEeeecC
Confidence            9999998



>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 89/574 (15%), Positives = 167/574 (29%), Gaps = 168/574 (29%)

Query: 52  HSSFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQD---DVVS-------LNGSDG 101
           H  F     + G     + D +++FE    D+ D   VQD    ++S       +   D 
Sbjct: 6   HMDF-----ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 102 VSRTSNV--SLRDANHRG----------HNVNIQCTSLTDQLQRPGG-----LSAGNSAH 144
           VS T  +  +L                  N     + +  + ++P       +   +  +
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 145 NSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGK-------- 196
           N      K + SR+     +        P+    + V +D +      GSGK        
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPA----KNVLIDGVL-----GSGKTWVALDVC 171

Query: 197 -DEGLLD--NCGI---------IPSNCLPCLAST----VPSVEKRRSGSSSPPRPFKKTA 240
               +    +  I          P   L  L        P+   R   SS+         
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 241 SKLS--FKWKEGHANATLV---------------SSKMLL-SRPIS-----GAQVPFCPI 277
           ++L    K K  + N  LV               S K+LL +R         A       
Sbjct: 232 AELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 278 EKKMLDSWSQIEPNTFKVRGV--NYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARF 335
                 + +  E     V+ +   YL  + ++         P  + +  ++   D +A +
Sbjct: 291 LDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATW 344

Query: 336 -----VELPAI-----SSHAKLPP--------MLVV---NVQIPLYPTAIFQSEIDGEGI 374
                V    +     SS   L P         L V   +  IP    ++   ++    +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 375 SIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVE 434
            +V+      S  ++     +ES   I                +    ++K+     N  
Sbjct: 405 MVVVNKLHKYSLVEK---QPKESTISIPS--------------IYLELKVKLE----NEY 443

Query: 435 DLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISR----------- 483
            LH     R ++  YN          + +  ++ +   +D + +S+I             
Sbjct: 444 ALH-----RSIVDHYN--------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 484 KGFEA-FLD----RLKICILDVGLTIQGNKVDEL 512
             F   FLD      KI          G+ ++ L
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00