Citrus Sinensis ID: 009239

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MEEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGHSIVHSTRRHESSRLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFTGPKSLAEIREEKKKAEESGGHFGKVGHLSRTLTDFQGPKPLSEILKEKRRPGTVSDADTWSC
cHHHHHccccccEEEEccccccccccccccccHHHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccc
cHHHHHcccccEEEEEEccccccccccccccccHHHcccccccHEHEcccccccccccccccHHHHcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEccHHHHHccccccccHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccEcccccccccccccccHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccccc
meeelqkrntdcvyflaspltckkgldceyrhneiarlnprdcwywlagncinprcgfrhppldahvteapsesvslpcqssipvnktsipcyfyfngfcsrgdrcsflhgpdgiapngkssksASAVTDSLLsenktsagdgtgsppteirpnpseaplkLAVDvrvqpkghllqsapkriperraspqislsegetvavvksdsmVAAEGFMKtkshlytdwssdehaddhvepeerlesspgfdvlvdnenraenlgfeddseYLLATNREHRELnghflgydfegpieydpmypesephegetynvhyyldnehiLDKVREYPGRARERILDSMLSRkrklfpmkvsvddCNADLRDYLRkrrvvdghsivhstrrhessrLMGRIQGRHRGLLLHGRLASEFGknyieshghkgtlpnganqhgwarhsksniLRQHHKGKRLLKRKSHLsaisrkpfsserrssqtetaftgpkSLAEIREEKKKAeesgghfgkvghlsrtltdfqgpkplSEILkekrrpgtvsdadtwsc
meeelqkrntdcvyflASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSEnktsagdgtgsppteirpnpseAPLKLAVDVRVQPkghllqsapkriperraspqislsegetvavVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDsmlsrkrklfpmkvsvddcnADLRDYLrkrrvvdghsivhstrrhessrlmgrIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQhhkgkrllkrkshlsaisrkpfsserrssqtetaftgpkslaEIREEKKKaeesgghfgkvghlsrtltdfqgpkplseilkekrrpgtvsdadtwsc
MEEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGHSIVHSTRRHESSRLMgriqgrhrglllhgrlASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFTGPKSLAEIReekkkaeeSGGHFGKVGHLSRTLTDFQGPKPLSEILKEKRRPGTVSDADTWSC
*********TDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAH************CQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHG**********************************************************************************************************************************************************EYLLATNREHRELNGHFLGYDFEGPIEYDPMY********ETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGHSIVH***********GRIQGRHRGLLLHGRLASEFGKNYIE******************************************************************************************************************************
**********DCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHV********************TSIPCYFYFNGFCSRGD************************************************************************************************************************************************LVD****************************************************************************************************************************************************************************************************************************************************************************EIL************DTW**
*********TDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHV************QSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPN************SLLSEN*************EIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWS*****************SPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGHSIVH********RLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAI********************PKSLAEIR***********HFGKVGHLSRTLTDFQGPKPLSEILKE***************
******KRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPS*SVSLPCQSS****KTSIPCYFYFNGFCSRGDRCSFLH*********************************************************************************************************************************LESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYP*RARERILDSMLSRKRKL************************************************************************************************************************************************************************GPKPL******KR*************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGHSIVHSTRRHESSRLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFTGPKSLAEIREEKKKAEESGGHFGKVGHLSRTLTDFQGPKPLSEILKEKRRPGTVSDADTWSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
Q6AT25493 Zinc finger CCCH domain-c yes no 0.825 0.902 0.311 9e-48
Q6K977 647 Zinc finger CCCH domain-c no no 0.829 0.690 0.293 1e-43
Q9ZUM0 669 Zinc finger CCCH domain-c yes no 0.860 0.693 0.318 1e-41
Q5ZJJ1 723 Zinc finger CCCH domain-c yes no 0.153 0.114 0.299 4e-06
O75152 810 Zinc finger CCCH domain-c yes no 0.144 0.096 0.31 4e-06
Q6NZF1 792 Zinc finger CCCH domain-c yes no 0.144 0.098 0.3 6e-06
Q5REG6 811 Zinc finger CCCH domain-c yes no 0.146 0.097 0.3 3e-05
>sp|Q6AT25|C3H34_ORYSJ Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1 Back     alignment and function desciption
 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 245/546 (44%), Gaps = 101/546 (18%)

Query: 9   NTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPL-DAHV 67
           NTDCVYFLASP TC KG  CEYRH + AR N R+CWYW  GNC+NP C FRHPPL + + 
Sbjct: 17  NTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNK 76

Query: 68  TEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGP----DGIAPNGKSSK 123
           T++ ++ +SL C +S+   K + PCYFY+N  CS+GD C +LH P    D +  + K++ 
Sbjct: 77  TKSLADPLSL-CSTSV---KAANPCYFYYNSHCSKGDNCPYLHEPLTSNDAVGTSCKATT 132

Query: 124 SASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIP 183
           S  AV+ S + +        T + P                    Q     ++  P  I 
Sbjct: 133 SNPAVSKSYVGDEMVEESKDTITNP-------------------CQDTSCHIKEVPVSI- 172

Query: 184 ERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESS 243
               +P+   +E  + A+  S  +   + +MK  +   +D +S +   DH E +ER +SS
Sbjct: 173 ----NPEFGEAEAVSGALETSTDI---DEYMKCSA--VSDLNSGDSTMDHTEQDER-DSS 222

Query: 244 PGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPH 303
           PGFDVLVD     + L  + D E+ L T  +++ L+     Y    P+ YD  Y     H
Sbjct: 223 PGFDVLVD-----DCLSNKSDLEHQLTTESDNKVLHAE---YGIRDPVLYDMYY-----H 269

Query: 304 EGETYNVHYYLDNEHILDKVREY-----PGRARERILDSMLSRKRKLFPMKVSVDDCNAD 358
           + E YN   Y      LD  + Y     P  A E   +  L     L P    V     D
Sbjct: 270 DPEYYN---YEPEFCGLDDRQGYLYLCQPNGAHEHESEITLGH---LLPQNTEVTSDEYD 323

Query: 359 LRDYLRKRRVVDGHSIVHSTRRHESSRLMGR--------IQGRHRGLLLHGRLASEFGKN 410
            R +   R      +  +   +H   R + +         +G+   +     L  +    
Sbjct: 324 RR-FFNPRNFTSSVADTNFVHQHTQIRHISKRRPENRKGAKGKKDCIKRSRCLEPKNSTQ 382

Query: 411 YIESHGHK-------GTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPF 463
            IES   +       G  P  AN   +    K N  +Q H           LSA      
Sbjct: 383 QIESMPTRQRKDYLMGECPQPANHATFRGRRKKNRGKQQHV----------LSA------ 426

Query: 464 SSERRSSQTETA-FTGPKSLAEIREEKKKAEESGGHFGKVGHLSRTLT-DFQGPKPLSEI 521
               +SS+  TA FTGPK+LA+I+EEK K+  S  H        R+ + DF+GPK L+E+
Sbjct: 427 ----KSSEHPTADFTGPKTLAQIKEEKCKSNSSFSHSTACTPNVRSFSDDFEGPKSLTEL 482

Query: 522 LKEKRR 527
           L  K R
Sbjct: 483 LMTKSR 488

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZJJ1|ZC11A_CHICK Zinc finger CCCH domain-containing protein 11A OS=Gallus gallus GN=ZC3H11A PE=2 SV=1 Back     alignment and function description
>sp|O75152|ZC11A_HUMAN Zinc finger CCCH domain-containing protein 11A OS=Homo sapiens GN=ZC3H11A PE=1 SV=3 Back     alignment and function description
>sp|Q6NZF1|ZC11A_MOUSE Zinc finger CCCH domain-containing protein 11A OS=Mus musculus GN=Zc3h11a PE=1 SV=1 Back     alignment and function description
>sp|Q5REG6|ZC11A_PONAB Zinc finger CCCH domain-containing protein 11A OS=Pongo abelii GN=ZC3H11A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
255566961530 nucleic acid binding protein, putative [ 0.972 0.988 0.519 1e-146
297738926573 unnamed protein product [Vitis vinifera] 0.922 0.867 0.555 1e-143
147821409554 hypothetical protein VITISV_011679 [Viti 0.970 0.944 0.526 1e-139
356513935524 PREDICTED: zinc finger CCCH domain-conta 0.931 0.958 0.472 1e-111
356565193526 PREDICTED: zinc finger CCCH domain-conta 0.935 0.958 0.474 1e-109
449445373 721 PREDICTED: zinc finger CCCH domain-conta 0.920 0.687 0.317 4e-50
224101995 721 predicted protein [Populus trichocarpa] 0.944 0.705 0.311 2e-48
357477999594 Immunoglobulin G binding protein A [Medi 0.200 0.181 0.721 5e-47
115462379493 Os05g0176400 [Oryza sativa Japonica Grou 0.825 0.902 0.311 6e-46
125551025493 hypothetical protein OsI_18652 [Oryza sa 0.833 0.910 0.318 1e-45
>gi|255566961|ref|XP_002524463.1| nucleic acid binding protein, putative [Ricinus communis] gi|223536251|gb|EEF37903.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/535 (51%), Positives = 361/535 (67%), Gaps = 11/535 (2%)

Query: 1   MEEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRH 60
           MEE++QKRNTDCVYFLASPLTCKKGL+CEYRHNEIARLNPRDCWYWLAG+C NP C FRH
Sbjct: 3   MEEDIQKRNTDCVYFLASPLTCKKGLECEYRHNEIARLNPRDCWYWLAGDCYNPTCAFRH 62

Query: 61  PPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGK 120
           PPL+ H  E P E  S    SS+P NKT++PCYF+FNGFC++GDRC F+HGP+  +  GK
Sbjct: 63  PPLEMHA-EGPPELSS----SSVPANKTNVPCYFFFNGFCNKGDRCFFMHGPEANSFTGK 117

Query: 121 SSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPK 180
           S  ++SA+ +++  ++K S G+ T S PTE+  NPSE   K   D+++QP       AP+
Sbjct: 118 SGSTSSAIKENIPLDSKISGGNDTVSAPTEVNANPSETAAKAVKDLKLQPYEDFQFPAPE 177

Query: 181 RIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERL 240
           +   R  SPQI++S+ E   ++    ++    F +++S  YT  S +E  DDHVEPEER 
Sbjct: 178 KTVMRSPSPQIAVSQSEEAVILNPSFLLKVNSFTESRSLAYTTQSPEEEMDDHVEPEERW 237

Query: 241 ESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPES 300
           ESSPGFDVLVD  +++ENL +EDD EYLL  + E R+ N  FLGYDFE  +EYD  Y ++
Sbjct: 238 ESSPGFDVLVD--DKSENLDYEDDQEYLLPLDMEQRDPNNCFLGYDFENLVEYDHAYHDA 295

Query: 301 EPHEGE-TYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCN-AD 358
           E   G   Y+   + DN HI D V    G +R  + DS+LS+KRKL  M++S++D    D
Sbjct: 296 EDDYGSGKYDNTDFADNVHIFDDVGNDSGLSRNSVTDSLLSQKRKLVAMELSINDQRIVD 355

Query: 359 LRDYLRKRRVVDGHSIVHSTRRHESSRLMGRIQGR-HRGLLLHGRLASEFGKNYIESHGH 417
           LRD L K R + GH+++ S+RRH SS L+G  QGR       HG+L  E     IE H  
Sbjct: 356 LRDRLGKDRAIHGHTVIRSSRRHYSSHLLGHGQGRPGSNQRPHGKLVLEVKSTAIEPHRK 415

Query: 418 KGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFT 477
            G+   G N HGW RHS+SN  RQ  K +RL +++S  S + RKP S ER+SSQ  T FT
Sbjct: 416 NGSQLYGGNDHGWLRHSRSNRSRQRDKERRLARKQSLSSEVLRKPASKERKSSQASTQFT 475

Query: 478 GPKSLAEIREEKKKAEESGGHFGKVGHLSRTLT-DFQGPKPLSEILKEKRRPGTV 531
           GPK+LA+I+EEKKKAEE+G + GK  + SR  T DF+ PKPLSEILK+KRRP + 
Sbjct: 476 GPKTLAQIKEEKKKAEENGDYTGKTDNSSRMATADFESPKPLSEILKDKRRPSSA 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738926|emb|CBI28171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821409|emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513935|ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like [Glycine max] Back     alignment and taxonomy information
>gi|356565193|ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like [Glycine max] Back     alignment and taxonomy information
>gi|449445373|ref|XP_004140447.1| PREDICTED: zinc finger CCCH domain-containing protein 17-like [Cucumis sativus] gi|449487921|ref|XP_004157867.1| PREDICTED: zinc finger CCCH domain-containing protein 17-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101995|ref|XP_002312505.1| predicted protein [Populus trichocarpa] gi|222852325|gb|EEE89872.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357477999|ref|XP_003609285.1| Immunoglobulin G binding protein A [Medicago truncatula] gi|355510340|gb|AES91482.1| Immunoglobulin G binding protein A [Medicago truncatula] Back     alignment and taxonomy information
>gi|115462379|ref|NP_001054789.1| Os05g0176400 [Oryza sativa Japonica Group] gi|75254482|sp|Q6AT25.1|C3H34_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 34; Short=OsC3H34 gi|50511420|gb|AAT77343.1| unknown protein [Oryza sativa Japonica Group] gi|113578340|dbj|BAF16703.1| Os05g0176400 [Oryza sativa Japonica Group] gi|215734945|dbj|BAG95667.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630382|gb|EEE62514.1| hypothetical protein OsJ_17312 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125551025|gb|EAY96734.1| hypothetical protein OsI_18652 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2051683 669 AT2G02160 [Arabidopsis thalian 0.914 0.736 0.306 7.8e-42
UNIPROTKB|H9KVA5152 CPSF4L "Putative cleavage and 0.174 0.618 0.295 3.1e-06
UNIPROTKB|F1LX98 710 F1LX98 "Uncharacterized protei 0.248 0.188 0.28 6e-06
UNIPROTKB|B7Z7B0191 CPSF4 "Cleavage and polyadenyl 0.302 0.853 0.235 2.3e-05
RGD|1308290 793 Zc3h11a "zinc finger CCCH-type 0.230 0.156 0.291 5.2e-05
UNIPROTKB|F1NLA7 723 ZC3H11A "Zinc finger CCCH doma 0.141 0.105 0.362 5.3e-05
UNIPROTKB|Q5ZJJ1 723 ZC3H11A "Zinc finger CCCH doma 0.141 0.105 0.362 5.3e-05
UNIPROTKB|C9K0K2112 CPSF4 "Cleavage and polyadenyl 0.172 0.830 0.271 6.1e-05
UNIPROTKB|E1BV31243 CPSF4 "Uncharacterized protein 0.300 0.666 0.235 0.00012
UNIPROTKB|F6QB05 817 F6QB05 "Uncharacterized protei 0.137 0.090 0.358 0.00019
TAIR|locus:2051683 AT2G02160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 446 (162.1 bits), Expect = 7.8e-42, P = 7.8e-42
 Identities = 167/545 (30%), Positives = 236/545 (43%)

Query:     2 EEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHP 61
             EE+  K NTDCVYFLASPLTCKKG +CEYRH+E AR+NPRDC+YWL GNC+NP+CGFRHP
Sbjct:    25 EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84

Query:    62 PLDAHVTE---APSESVS-LPCQSSIP-VNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIA 116
             PL+  +     AP+ SV  +   +  P V K  +PC F+  G C +GD CSFLH P+  A
Sbjct:    85 PLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAA 144

Query:   117 PNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQ 176
                +    A   TD   S+            P ++  N S+  +K   D+   P+   + 
Sbjct:   145 YKKQHPVEAKPATDPQCSKKPIENNTEEKKLP-DV--NLSKV-VKGHTDISAAPR---VA 197

Query:   177 SAPKRIPERRASPQISLSEG-ETVAVVKSDSMVA-AEGFMKTKSHLYTDWSSDEHADDH- 233
             S   R   R     I    G E V   K     +  EG   T+  L   + SD++   H 
Sbjct:   198 STGLR-DSRSVEGYIPNHVGYEPVVQRKGPGFPSFTEGGHSTQ--LLQKYGSDDNNSFHN 254

Query:   234 -VEPEERL-ESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGY-DFEGP 290
               + ++ L ESSPGFDVLVDNE         +D     +  R + E +  F    D +  
Sbjct:   255 GKDADDVLRESSPGFDVLVDNEAGDSEYYHVEDRYGRRSQERGNSEYDPDFSAIADGDKE 314

Query:   291 IEYDPMYPESEPHEGETYNVHYYLDNEHI--LDKVREYPGRAR-ERILDS----MLSRKR 343
                +  +   +  E   +  H  + +E    LD+ R Y    R E IL+S     L+++R
Sbjct:   315 ALREQRFDSYDRREDRGWG-HRRVSSEREDRLDR-RVYAEDERSENILESDLRYRLAKQR 372

Query:   344 KLFPMKVSVDDCNADLRDYLRKRRVVD-GHSIVHSTRRHESSRLMXXXXXXXXXXXXXXX 402
             K   M++SV        DY      +D G+     +RR                      
Sbjct:   373 KGNGMRLSVGG-----HDYAAPDSSMDRGY---RESRRDTPRENSISSSRLQGRIKLRER 424

Query:   403 XASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKP 462
                E G ++ +    +G   +     G  R      L ++H G +  +R        R+ 
Sbjct:   425 SNGEEGHHF-DRRSERGRDRSELPSQGRLRDRIKGRLEENHSGNQ--ERGFGAPWARRRE 481

Query:   463 FSSERRSSQTETAFTGPKSLAEIRXXXXXXXXSGGHFGKVGHLSRTLTD-FQGPKPLSEI 521
                ER+S+        PKS  E              F +  H  +   D F  P P SEI
Sbjct:   482 MEDERKSA--------PKSSRE-ESKPEPSLGKRKSFEEDHHSHKRSRDSFAAPLPFSEI 532

Query:   522 LKEKR 526
             LK K+
Sbjct:   533 LKRKK 537
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|H9KVA5 CPSF4L "Putative cleavage and polyadenylation-specificity factor subunit 4-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LX98 F1LX98 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z7B0 CPSF4 "Cleavage and polyadenylation-specificity factor subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308290 Zc3h11a "zinc finger CCCH-type containing 11A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA7 ZC3H11A "Zinc finger CCCH domain-containing protein 11A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJJ1 ZC3H11A "Zinc finger CCCH domain-containing protein 11A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C9K0K2 CPSF4 "Cleavage and polyadenylation-specificity factor subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV31 CPSF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6QB05 F6QB05 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6AT25C3H34_ORYSJNo assigned EC number0.31130.82560.9026yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
smart0035627 smart00356, ZnF_C3H1, zinc finger 8e-05
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 6e-04
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information 
 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 91  PCYFYFNGFCSRGDRCSFLHGP 112
            C F+  G+C RGDRC F H  
Sbjct: 6   LCKFFKRGYCPRGDRCKFAHPL 27

Length = 27
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
KOG4791 667 consensus Uncharacterized conserved protein [Funct 99.92
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.25
KOG4791 667 consensus Uncharacterized conserved protein [Funct 99.23
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 99.11
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.81
KOG1040325 consensus Polyadenylation factor I complex, subuni 98.78
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.68
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.12
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.01
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 97.72
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 97.49
KOG1763343 consensus Uncharacterized conserved protein, conta 97.41
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 97.33
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.3
smart0035627 ZnF_C3H1 zinc finger. 97.16
smart0035627 ZnF_C3H1 zinc finger. 96.98
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 96.92
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 96.89
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 96.58
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.12
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 95.8
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 95.47
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 94.69
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 94.27
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 94.08
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 91.97
KOG2185486 consensus Predicted RNA-processing protein, contai 91.39
KOG1763343 consensus Uncharacterized conserved protein, conta 91.13
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 90.78
KOG2185486 consensus Predicted RNA-processing protein, contai 87.17
KOG2333614 consensus Uncharacterized conserved protein [Gener 84.86
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 83.39
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=99.92  E-value=1.3e-25  Score=236.42  Aligned_cols=463  Identities=16%  Similarity=0.117  Sum_probs=227.2

Q ss_pred             hhhhccCCccccccccCccCCCCCCCCCCCCcccccC-CCccCcccccCc-cCCCCCCCCC--CCCCccc---CCCCCCC
Q 009239            2 EEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARL-NPRDCWYWLAGN-CINPRCGFRH--PPLDAHV---TEAPSES   74 (539)
Q Consensus         2 e~~~~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~-~p~vCkyFL~G~-Ctn~~CpFsH--~~~d~~~---~ec~~~p   74 (539)
                      +|++++..++|+||+.+ ..|++  .|+|+|...+++ ++.+|+||++|+ |++++|-|+|  +++....   ++.+...
T Consensus        25 ~E~al~n~t~C~~w~~~-~~C~k--~C~YRHSe~~~kr~e~~CYwe~~p~gC~k~~CgfRH~~pPLkg~l~~~p~~pe~e  101 (667)
T KOG4791|consen   25 CEAALGNETVCTLWQEG-RCCRK--VCRYRHSEIDKKRSEIPCYWENQPTGCQKLNCGFRHNRPPLKGVLPTVPESPEEE  101 (667)
T ss_pred             hHHHhcCcchhhhhhhc-Ccccc--cccchhhHHhhhcCcccceeecCCCccCCCccccccCCCchhhhccCCCCCcccc
Confidence            57788888888888888 77776  888888887776 778888888888 8888888888  4443221   1122211


Q ss_pred             CCCCCCCCCC--CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCcCCCCC--------
Q 009239           75 VSLPCQSSIP--VNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGT--------  144 (539)
Q Consensus        75 ~g~~C~~s~p--~~k~~~pC~Ff~~G~C~KGd~CpF~H~~~~p~~~G~~~k~~s~~~~~~pl~n~~~~g~~~--------  144 (539)
                      +..+--.+-+  ......||-|+++|+|..++-|-|.|.+..-........ +.++++ .-+..+-+.|++-        
T Consensus       102 v~~~~~SAq~~sV~~~p~P~l~~~K~~e~~~D~~s~Lh~P~A~~~~~d~e~-~~~A~~-e~~d~K~~~~l~~~KK~~~~~  179 (667)
T KOG4791|consen  102 VKASQLSAQQNSVQSNPSPQLRSVKKVESSEDVPSPLHPPVAINAADDDED-DDDAFS-EEGDEKKTPTLQPTKKVHNGL  179 (667)
T ss_pred             cccccccCCCcccccCCchHHHHhhhhhhhccccccCCCCcccccccCccc-cccccc-ccccCCCCCCCCcccccCCcc
Confidence            1111000001  234567899999999999999999999943111001110 111111 1111121222110        


Q ss_pred             CCCCCCCCCCCCCCccccccccccCCCcccccCCCCcCCCCCCCCccccccccceeeecCCCcccc---cCccccccccc
Q 009239          145 GSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAA---EGFMKTKSHLY  221 (539)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~k~Q~~~~~q~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~s~~~  221 (539)
                      -.-...-+.|....+...            ++++-       +.-.+.++..++      ..|+..   .||..---+-+
T Consensus       180 ~~K~V~~H~~i~~~~~~~------------s~gi~-------D~~~v~~k~~k~------~~Pv~~~~G~Gv~s~~l~~e  234 (667)
T KOG4791|consen  180 RVKSVRKHAVNIKQGECL------------SFGIK-------DLEEIKSKKMKE------KSPVQGEGGSGVSSLLLHPE  234 (667)
T ss_pred             cceeeccccccccccccc------------ccccc-------cHHHhccccccc------cCCCcccCCCCCChhhcCCC
Confidence            000001111111111000            00000       111122333333      111111   11110000000


Q ss_pred             ccC-CCcc-ccc-----CCCC-ccccccCCCCcceeecchhhhcccCCCCChhhhhhcccccccccccccccccCCCccC
Q 009239          222 TDW-SSDE-HAD-----DHVE-PEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEY  293 (539)
Q Consensus       222 ~~q-~s~~-~~d-----~h~e-~ee~~esSpGfDVLVdd~~~~~n~~y~~~~e~~~~~~~d~~~l~~~~~~y~~~~~~~y  293 (539)
                      ..| .+.+ .-+     +.-. +.-+++|+|||||||+++  +-|++|++-....-  .+-+.-|+   -.||-    |+
T Consensus       235 ~~~L~~k~~~~~~~~f~ng~d~d~~l~~s~~~~~~~v~~~--~~~s~y~~~~~~~~--~~~~er~~---~~~dp----d~  303 (667)
T KOG4791|consen  235 PVPLPEKENVRLKRKFSNGGDSDPPLKRSLAQLGKKVEAP--ETNSDYTPKKAQVS--KSLKERLG---MSADP----DN  303 (667)
T ss_pred             CccchhhhhhhhhhccccCCCCCchhhhhhhcccceecCc--CCCccccchHhhhh--hHHHHhcC---CCCCC----Ch
Confidence            000 0000 001     1111 233789999999999999  88888887766552  12222255   33443    22


Q ss_pred             CCCCC-CCCCCCCCccccccccccccccccccCCCccchhhhhhhccccccccCCCCCccccCcchhHHHHhhhhcccCC
Q 009239          294 DPMYP-ESEPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRRVVDGH  372 (539)
Q Consensus       294 d~~~~-d~e~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~DlR~~l~krr~~n~~  372 (539)
                      .-+.+ +-|++..+-|++|+-.-.+ -|.+.+...+  |+-.    ++. |-+...+-.++.-.||||++|-+||..|+-
T Consensus       304 ~~~~d~~~e~~~~~~~~s~~~r~~~-~wg~r~~~~~--~ed~----~~~-~~~~~~~r~e~~~esd~r~~~a~~~k~~~~  375 (667)
T KOG4791|consen  304 EDATDKVGEIHVKTLEESLLERASQ-KWGERQTKLK--TEDS----TSG-ARSSSTIRIEVLAESDHRQQEAERQKSKKD  375 (667)
T ss_pred             hhhccchhHHHHHHHHHHHHHHhhh-ccchhccccc--cccc----ccc-cccchhhHHHHHHhHHHHHHHHHHhhccCC
Confidence            22334 6678777889999876555 4777777654  2222    222 223333334455689999999999998887


Q ss_pred             Ccccccccccc-----c----ccCCccc-cccCC---cccCCceecccCcc-----cccccCCCCCCCCCCCCCCccccC
Q 009239          373 SIVHSTRRHES-----S----RLMGRIQ-GRHRG---LLLHGRLASEFGKN-----YIESHGHKGTLPNGANQHGWARHS  434 (539)
Q Consensus       373 ~~~~~~~r~~s-----~----~~~~~~~-~~~~g---~r~~gRi~~~~~~~-----~i~~~~e~e~l~~~~~~~~~~~~~  434 (539)
                      +...-  =|++     +    +..+|++ ++.-|   +++.|||++.-.+.     .++-++      .+++.+.-  -+
T Consensus       376 ~~~i~--~hd~~~~~s~~~~~~~~sr~~s~~~~~~s~s~~~~~ik~re~~~~e~~~~~~~~s------e~~~~~~e--~~  445 (667)
T KOG4791|consen  376 TTCIK--LHDSEIKKTVVLPPIVASRGQSEEPAGKTKSMQEVHIKTREEIKLEKALRVQQSS------ESSPSQHE--AT  445 (667)
T ss_pred             ceeec--ccccccccccccchhhhcccCCcCccccchhhhhhhhhhHhhhcchhhceecccc------ccCccccc--CC
Confidence            54311  1111     0    1111111 11123   69999999944433     222223      33332222  25


Q ss_pred             cchhhhhhhhccchhccccccccccc----CCccccccCCCCccccCCcccHHHHHHHHhhhhhcCCCccccC-----CC
Q 009239          435 KSNILRQHHKGKRLLKRKSHLSAISR----KPFSSERRSSQTETAFTGPKSLAEIREEKKKAEESGGHFGKVG-----HL  505 (539)
Q Consensus       435 ~~~~~r~~~~~k~~~k~~~~~s~~~r----~~~~k~r~~~~~~~~F~GPKsLAeik~eK~~~~~s~~~~~k~~-----~~  505 (539)
                      .+.+|+-++++|+--+    -++|..    -|..+-|.-+++.  =+.|||-   ++|-+.+-    +++|..     |.
T Consensus       446 ~~~rl~~ri~~r~ee~----~~~n~~~g~~~~wa~rr~me~e~--~sa~~s~---r~es~~ep----s~~k~~~~e~~~~  512 (667)
T KOG4791|consen  446 PGARLLLRITKRTEEK----EEKNLQEGNEVDWASRRRMEAEE--ASAETTK---RCESMREP----SMQKQQEREKSVL  512 (667)
T ss_pred             ccchHHHHHhhhhhhc----cccchhcccCCchHHhhhhhhhh--ccccccc---hhhccCCc----hhhhhhhhhhhhc
Confidence            5666666655544222    222221    1112223333332  1234442   11111111    133331     11


Q ss_pred             --CCCCCCCCCCCcHHHHHhhhcCCCccCCCCC
Q 009239          506 --SRTLTDFQGPKPLSEILKEKRRPGTVSDADT  536 (539)
Q Consensus       506 --~~~~~~FegPKpLseILK~Kr~~~~~~~~~~  536 (539)
                        -..-+.|--|||.++|||+|--+.|+.+-.+
T Consensus       513 s~~rs~~s~~a~~p~~~~~~~k~~~~sg~s~~n  545 (667)
T KOG4791|consen  513 TPLRSCNTQVAEKPVLTAVPKKLPTKSGDSLLN  545 (667)
T ss_pred             ccccccccccccchHHHhhhhcccccccccccc
Confidence              1223489999999999999998877766543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-10
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 8e-05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 9e-04
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 2e-04
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 4e-07
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 8e-04
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 2e-04
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 7  KRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAH 66
          ++   C ++L     CKKG  CE+ H       P   +Y   G C N  C F H   ++ 
Sbjct: 8  EKTVVCKHWLRG--LCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK 65

Query: 67 VTEAPSESVS 76
          + + P    S
Sbjct: 66 IKDCPWSGPS 75
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.39
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.27
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 98.96
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.95
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 98.93
2rhk_C72 Cleavage and polyadenylation specificity factor su 98.9
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.86
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.79
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 98.79
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.77
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.73
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.69
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.56
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.53
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.52
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 97.2
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.63
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 95.28
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 95.64
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 95.14
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 92.83
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 92.51
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 91.94
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 90.77
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 84.97
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.39  E-value=1.2e-13  Score=114.09  Aligned_cols=57  Identities=30%  Similarity=0.690  Sum_probs=50.4

Q ss_pred             hccCCccccccccCccCCCCCCCCCCCCcccccCCCccCccccc-CccCCCCCCCCCCCCC
Q 009239            5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLD   64 (539)
Q Consensus         5 ~~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~p~vCkyFL~-G~Ctn~~CpFsH~~~d   64 (539)
                      ...+..+|+||++|  .|++|++|.|+|+......+ +|+||+. |.|.++.|+|+|....
T Consensus         6 ~~~k~~~C~~fl~G--~C~~G~~C~fsH~~~~~~~~-~C~~f~~~G~C~~~~C~f~H~~~~   63 (77)
T 2d9n_A            6 SGEKTVVCKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPE   63 (77)
T ss_dssp             SCCTTSBCHHHHTT--CCSCTTSSSSBCSCCTTTSC-BCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred             CCCcceeCHhHccC--cCCCCCCCCCccccccCcCC-CCcccCCCCccCCCCeeccCCCcc
Confidence            34678999999998  99999999999999876555 8999997 9999999999999753
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 539
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 1e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-04
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 7e-04
d2cqea229 g.66.1.1 (A:429-457) Zinc finger CCCH domain-conta 0.001
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 87  KTSIPCYFYFNGFCSRGDRCSFLHGPD 113
           KT +   F  +G C  G++C F HG  
Sbjct: 5   KTELCRPFEESGTCKYGEKCQFAHGFH 31
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 29 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.99
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.84
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 97.15
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.8
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 96.47
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.41
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.06
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 95.75
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.73
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 95.68
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 90.63
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.4e-06  Score=57.72  Aligned_cols=25  Identities=44%  Similarity=1.206  Sum_probs=22.9

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCC
Q 009239           87 KTSIPCYFYFNGFCSRGDRCSFLHG  111 (539)
Q Consensus        87 k~~~pC~Ff~~G~C~KGd~CpF~H~  111 (539)
                      +...+|+||.+|+|.+|++|+|+|.
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccC
Confidence            4567899999999999999999996
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure